BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15551
(640 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P35458|DCTN1_CHICK Dynactin subunit 1 OS=Gallus gallus GN=DCTN1 PE=2 SV=2
Length = 1224
Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 132/203 (65%), Gaps = 43/203 (21%)
Query: 1 MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTR 60
++++++DL+EKL+T+KIK R+ D+ K+ +
Sbjct: 213 LRSQVRDLEEKLETLKIK-----RNEDKAKL----------------------------K 239
Query: 61 DLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE----DTADLVETLEM 116
+L++ KIQL+Q E+K+K+ E QA L+R L++ K+E ++A+EAKE + AD + +EM
Sbjct: 240 ELEKYKIQLEQVQEWKSKMQEQQADLQRRLKEAKKEAKDALEAKERYMEEMADTADAIEM 299
Query: 117 MTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADI-EKSCDGAGDGTEVSHYQIK 175
TLDKEMAEERAE+LQ E+D KEK+E LT+D+E++K +I EK DGA S YQ+K
Sbjct: 300 ATLDKEMAEERAESLQQEVDSLKEKVEYLTMDLEILKHEIEEKGSDGA-----ASSYQVK 354
Query: 176 QLEQQNMRLRETLVRLRDLSAHE 198
QLE+QN RL+E LVR+RDLSA E
Sbjct: 355 QLEEQNARLKEALVRMRDLSASE 377
Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 105/149 (70%)
Query: 319 RLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALG 378
R+RDLSA EK E KLQK +E+K E L + +EKL++ V + E +L EQVDAALG
Sbjct: 369 RMRDLSASEKQEHVKLQKQMEKKNTELESLRQQREKLQEEVKQAEKTVDELKEQVDAALG 428
Query: 379 AEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSA 438
AEEMV+ L+ + L+LE+ V + E + DLEA+ ++D+LQE+A+E E+EL+E++++A +
Sbjct: 429 AEEMVETLTERNLDLEEKVRELRETVGDLEAMNEMNDELQENARETELELREQLDLAAAR 488
Query: 439 TREVIREKEAALESLADRELTIVKFRELV 467
RE + EAA E++AD + TI K+REL
Sbjct: 489 VREAEKRVEAAQETVADYQQTIKKYRELT 517
>sp|P13496|DCTN1_DROME Dynactin subunit 1 OS=Drosophila melanogaster GN=Gl PE=1 SV=2
Length = 1265
Score = 139 bits (350), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 96/204 (47%), Positives = 140/204 (68%), Gaps = 11/204 (5%)
Query: 319 RLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALG 378
RLRDLSAH+KH++ KL K++E K+ E EL +++EKL ++ ELEA ADL EQVDAALG
Sbjct: 399 RLRDLSAHDKHDIQKLSKELEMKRSEVTELERTKEKLSAKIDELEAIVADLQEQVDAALG 458
Query: 379 AEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSA 438
AEEMV+QL+ +K+ELED V EEI LEAL+ V +QL E E+E++L+EE+++A A
Sbjct: 459 AEEMVEQLAEKKMELEDKVKLLEEEIAQLEALEEVHEQLVESNHELELDLREELDLANGA 518
Query: 439 TREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELTIVKFRELNSLDEKV 498
+EV+RE++AA+E++ DR+ TIVKFRELV + L D+ + + R+ NS +EK
Sbjct: 519 KKEVLRERDAAIETIYDRDQTIVKFRELV--------QKLNDQ---LTELRDRNSSNEKE 567
Query: 499 STENIEKCVTYFNTFYPVLFPDTK 522
S ++ + Y +F ++K
Sbjct: 568 SLQDPSLKMVTETIDYKQMFAESK 591
Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 137/223 (61%), Gaps = 50/223 (22%)
Query: 1 MKAEIQDLKEKLDTMKIKY---REKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYRE 57
++A++ DL EKL+T+K + +E+ R+ D+MKIQ +Q EF+ KIM +QA+
Sbjct: 232 LQAQLADLTEKLETLKQRRNEDKERLREFDKMKIQFEQLQEFRTKIMGAQAS-------- 283
Query: 58 KTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE----DTADLVET 113
L++EL + KQE ++A+EAKE + ADL +
Sbjct: 284 ----------------------------LQKELLRAKQEAKDAIEAKEQHAQEMADLADN 315
Query: 114 LEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCD-------GAGDG 166
+EM+TLDKEMAEE+A+TLQ+EL+ +KE+IEEL +D+EL++++++ + G GD
Sbjct: 316 VEMITLDKEMAEEKADTLQLELESSKERIEELEVDLELLRSEMQNKAESAIGNISGGGDS 375
Query: 167 TEVSHYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRL 209
+S Y+ KQLEQQN+RL+ETLVRLRDLSAH+ + K L
Sbjct: 376 PGLSTYEFKQLEQQNIRLKETLVRLRDLSAHDKHDIQKLSKEL 418
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/183 (45%), Positives = 121/183 (66%), Gaps = 29/183 (15%)
Query: 56 REKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE----DTADLV 111
+E+ R+ D+MKIQ +Q EF+ KIM +QA L++EL + KQE ++A+EAKE + ADL
Sbjct: 254 KERLREFDKMKIQFEQLQEFRTKIMGAQASLQKELLRAKQEAKDAIEAKEQHAQEMADLA 313
Query: 112 ETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCD-------GAG 164
+ +EM+TLDKEMAEE+A+TLQ+EL+ +KE+IEEL +D+EL++++++ + G G
Sbjct: 314 DNVEMITLDKEMAEEKADTLQLELESSKERIEELEVDLELLRSEMQNKAESAIGNISGGG 373
Query: 165 DGTEVSHYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFD 224
D +S Y+ KQLEQQN+RL+ETLVRLRDLS AH+ + K
Sbjct: 374 DSPGLSTYEFKQLEQQNIRLKETLVRLRDLS------------------AHDKHDIQKLS 415
Query: 225 SRL 227
L
Sbjct: 416 KEL 418
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 485 IVKFRELNSLDEKVSTENIEKCVTYFNTFYPVLFPDTKFSHVGHLLMDYVKILSTASDCL 544
I++ + N LDE +T+NIEKCV +FN VL + + ++ D V L A + +
Sbjct: 730 IIELLKSNQLDENSTTDNIEKCVAFFNAMNSVLLAGEQLLNEIQMIRDCVASLGAACESI 789
Query: 545 QTDSKIIQALIQE 557
+D+ I + +IQE
Sbjct: 790 LSDTAIAKVIIQE 802
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 574 NEIGREGSTENIEKCVTYFNTFYPVLFPGHPSFSSCGSLLMDYVKILSTACDCLQTDSKI 633
N++ +T+NIEKCV +FN VL G + ++ D V L AC+ + +D+ I
Sbjct: 737 NQLDENSTTDNIEKCVAFFNAMNSVLLAGEQLLNEI-QMIRDCVASLGAACESILSDTAI 795
Query: 634 IQALIQ 639
+ +IQ
Sbjct: 796 AKVIIQ 801
>sp|Q14203|DCTN1_HUMAN Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=1 SV=3
Length = 1278
Score = 139 bits (349), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 88/203 (43%), Positives = 133/203 (65%), Gaps = 43/203 (21%)
Query: 1 MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTR 60
++A+++DL+EKL+T+++K AE KAK+ +
Sbjct: 220 LRAQVRDLEEKLETLRLKR-----------------AEDKAKL----------------K 246
Query: 61 DLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE----DTADLVETLEM 116
+L++ KIQL+Q E+K+K+ E QA L+R L++ ++E +EA+EAKE + AD + +EM
Sbjct: 247 ELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMADTADAIEM 306
Query: 117 MTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADI-EKSCDGAGDGTEVSHYQIK 175
TLDKEMAEERAE+LQ E++ KE+++ELT D+E++KA+I EK DGA S YQ+K
Sbjct: 307 ATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGA-----ASSYQLK 361
Query: 176 QLEQQNMRLRETLVRLRDLSAHE 198
QLE+QN RL++ LVR+RDLS+ E
Sbjct: 362 QLEEQNARLKDALVRMRDLSSSE 384
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 109/150 (72%), Gaps = 2/150 (1%)
Query: 319 RLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQ-EKLKQRVTELEADCADLHEQVDAAL 377
R+RDLS+ EK E KLQK +E+K QE E+++ Q E+L++ +++ E+ +L EQVDAAL
Sbjct: 376 RMRDLSSSEKQEHVKLQKLMEKKNQE-LEVVRQQRERLQEELSQAESTIDELKEQVDAAL 434
Query: 378 GAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARS 437
GAEEMV+ L+ + L LE+ V + E + DLEA+ ++D+LQE+A+E E+EL+E+++MA +
Sbjct: 435 GAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENARETELELREQLDMAGA 494
Query: 438 ATREVIREKEAALESLADRELTIVKFRELV 467
RE + EAA E++AD + TI K+R+L
Sbjct: 495 RVREAQKRVEAAQETVADYQQTIKKYRQLT 524
>sp|O08788|DCTN1_MOUSE Dynactin subunit 1 OS=Mus musculus GN=Dctn1 PE=1 SV=3
Length = 1281
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 129/206 (62%), Gaps = 49/206 (23%)
Query: 1 MKAEIQDLKEKLDTMKIKYRE---KTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYRE 57
++A+++DL+EKL+T+++K E K ++L++ KIQL+Q E+K+K
Sbjct: 220 LRAQVRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSK--------------- 264
Query: 58 KTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAK----EDTADLVET 113
+ E QA L+R L++ ++E +EA+EAK E+ AD +
Sbjct: 265 ---------------------MQEQQADLQRRLKEARKEAKEALEAKERYMEEMADTADA 303
Query: 114 LEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADI-EKSCDGAGDGTEVSHY 172
+EM TLDKEMAEERAE+LQ E++ KE+++ELT D+E++KA+I EK DGA S Y
Sbjct: 304 IEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGA-----ASSY 358
Query: 173 QIKQLEQQNMRLRETLVRLRDLSAHE 198
Q+KQLE+QN RL++ LVR+RDLS+ E
Sbjct: 359 QLKQLEEQNARLKDALVRMRDLSSSE 384
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 109/150 (72%), Gaps = 2/150 (1%)
Query: 319 RLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQ-EKLKQRVTELEADCADLHEQVDAAL 377
R+RDLS+ EK E KLQK +E+K QE E+++ Q E+L++ +++ E+ +L EQVDAAL
Sbjct: 376 RMRDLSSSEKQEHVKLQKLMEKKNQE-LEVVRQQRERLQEELSQAESTIDELKEQVDAAL 434
Query: 378 GAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARS 437
GAEEMV+ L+ + L LE+ V + E + DLEA+ ++D+LQE+A+E E+EL+E+++MA +
Sbjct: 435 GAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENARETELELREQLDMAGA 494
Query: 438 ATREVIREKEAALESLADRELTIVKFRELV 467
RE + EAA E++AD + TI K+R+L
Sbjct: 495 RVREAQKRVEAAQETVADYQQTIKKYRQLT 524
>sp|P28023|DCTN1_RAT Dynactin subunit 1 OS=Rattus norvegicus GN=Dctn1 PE=2 SV=2
Length = 1280
Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 127/206 (61%), Gaps = 50/206 (24%)
Query: 1 MKAEIQDLKEKLDTMKIKYRE---KTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYRE 57
++ +++DL+EKL+T+++K E K ++L++ KIQL+Q E+K+
Sbjct: 220 LRDQVRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKS---------------- 263
Query: 58 KTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAK----EDTADLVET 113
K+ E QA L+R L++ K+ K EA+EAK E+ AD +
Sbjct: 264 --------------------KMQEQQADLQRRLKEAKEAK-EALEAKERYMEEMADTADA 302
Query: 114 LEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADI-EKSCDGAGDGTEVSHY 172
+EM TLDKEMAEERAE+LQ E++ KE+++ELT D+E++KA+I EK DGA S Y
Sbjct: 303 IEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGA-----ASSY 357
Query: 173 QIKQLEQQNMRLRETLVRLRDLSAHE 198
Q+KQLE+QN RL++ LVR+RDLS+ E
Sbjct: 358 QLKQLEEQNARLKDALVRMRDLSSSE 383
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 109/150 (72%), Gaps = 2/150 (1%)
Query: 319 RLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQ-EKLKQRVTELEADCADLHEQVDAAL 377
R+RDLS+ EK E KLQK +E+K QE E+++ Q E+L++ +++ E+ +L EQVDAAL
Sbjct: 375 RMRDLSSSEKQEHVKLQKLMEKKNQE-LEVVRQQRERLQEELSQAESTIDELKEQVDAAL 433
Query: 378 GAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARS 437
GAEEMV+ L+ + L LE+ V + E + DLEA+ ++D+LQE+A+E E+EL+E+++MA +
Sbjct: 434 GAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENARETELELREQLDMAGA 493
Query: 438 ATREVIREKEAALESLADRELTIVKFRELV 467
RE + EAA E++AD + TI K+R+L
Sbjct: 494 RVREAQKRVEAAQETVADYQQTIKKYRQLT 523
>sp|Q6PCJ1|DCTN1_XENLA Dynactin subunit 1 OS=Xenopus laevis GN=dctn1 PE=2 SV=1
Length = 1232
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/203 (43%), Positives = 132/203 (65%), Gaps = 43/203 (21%)
Query: 1 MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTR 60
++A+++DL+EKL+T+K+K AE KAK+ +
Sbjct: 178 LRAQVKDLEEKLETLKMK-----------------RAEDKAKL----------------K 204
Query: 61 DLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAK----EDTADLVETLEM 116
++++ K+QL+Q E+K+K+ E QA ++R+L++ K+E +EA+EAK E+ AD + +EM
Sbjct: 205 EMEKSKLQLEQVQEWKSKMQEQQADIQRQLKEAKKEAKEALEAKERYMEEMADTADAIEM 264
Query: 117 MTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADI-EKSCDGAGDGTEVSHYQIK 175
TLDKEMAEERAE+LQ E+D K+K+EE +D+E++K +I EK DGA S YQ+K
Sbjct: 265 ATLDKEMAEERAESLQQEVDTLKDKVEEHKIDLEILKHEIEEKGSDGA-----ASSYQVK 319
Query: 176 QLEQQNMRLRETLVRLRDLSAHE 198
QLE+QN RL+E LVR+RDLSA E
Sbjct: 320 QLEEQNARLKEALVRMRDLSASE 342
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 131/226 (57%), Gaps = 17/226 (7%)
Query: 319 RLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALG 378
R+RDLSA EK E K+QK +E+K E L + +EKL++ + +E +L EQVDAALG
Sbjct: 334 RMRDLSASEKQEHIKVQKQMEKKNTELDTLRQQKEKLQEEASHMEKTIDELKEQVDAALG 393
Query: 379 AEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSA 438
AEEMV+ L+ + L+LE+ V + E + DLEA+ ++D+LQE+A+E E+EL+E+++MA +
Sbjct: 394 AEEMVETLAERNLDLEEKVRELRETVSDLEAINEMNDELQENARETELELREQLDMAGAR 453
Query: 439 TREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELTI------------- 485
RE + EAA E++AD + TI K+R+L +E E +E ++
Sbjct: 454 VREAEKRVEAAQETVADYQQTIKKYRDLTAHLQEVNSELRNQQEASVEKEQQPSPEMFDF 513
Query: 486 -VKFRELNSLDEKVSTENIEKCVTYFNTFYPVL---FPDTKFSHVG 527
+KF E + + + E + VT N +L PD+ H G
Sbjct: 514 KIKFAETKAHAKAIEMELRKMEVTQANRHVSLLTSFMPDSFLRHGG 559
>sp|Q01397|DYNA_NEUCR Dynactin, 150 kDa isoform OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ro-3
PE=3 SV=3
Length = 1367
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 90/150 (60%), Gaps = 2/150 (1%)
Query: 319 RLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKL-KQRVTELEADCADLHEQVDAAL 377
RLRD++ ++ E+ K +EE +E E IK Q K+++ + EA DL EQ++ AL
Sbjct: 486 RLRDITQQQEEELKDQIKSMEEDLRE-FETIKEQHTTAKEKLAQTEAIVEDLREQLNNAL 544
Query: 378 GAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARS 437
GAEE+++ L+ Q + + + + I DLE+L+ ++D+L+ + + E E++EE+++ S
Sbjct: 545 GAEEIIESLTEQTMNQSEEIKELRAVIDDLESLKEINDELEINHVQNEKEMQEEIDLKDS 604
Query: 438 ATREVIREKEAALESLADRELTIVKFRELV 467
E R+ ESL D E T+ +FRELV
Sbjct: 605 IIAEQFRQANLQRESLEDMEYTLSRFRELV 634
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 106/198 (53%), Gaps = 36/198 (18%)
Query: 1 MKAEIQDLKEKLDTMKIKY---REKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYRE 57
M EI+DLK KL ++ K REK L+++K + D+ F+ I Q +Y+
Sbjct: 327 MNKEIEDLKAKLKVLEKKRMEDREKLNSLEKVKAERDK---FERIIQTLQ-----IKYQP 378
Query: 58 KTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMM 117
+ +++ ++K QL ++ + E ++A+ DTA +E+
Sbjct: 379 QQQEIQDLKRQLKEAENRLYNV-------------------EELQAEHDTA-----MELA 414
Query: 118 TLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQL 177
TLD+EMAEE AE L+VELD K+K EEL L++E+++ + + +G S + Q+
Sbjct: 415 TLDREMAEETAEVLKVELDALKQKNEELELEVEVLREENSEFTNGMSPEERASTGWL-QM 473
Query: 178 EQQNMRLRETLVRLRDLS 195
E+ N RLRE L+RLRD++
Sbjct: 474 ERNNERLREALIRLRDIT 491
>sp|Q9JMH9|MY18A_MOUSE Unconventional myosin-XVIIIa OS=Mus musculus GN=Myo18a PE=1 SV=2
Length = 2050
Score = 40.4 bits (93), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 104/193 (53%), Gaps = 10/193 (5%)
Query: 270 HEIFNNKNKFDSRLRDLSAHEIFNNNKFD----SRLRDLSAHEIFNNKNKFDSRLRDLSA 325
HE+ + +FDS L AHE K R +D+ E F+ K + + + D++
Sbjct: 1450 HELEKKQRRFDSELS--QAHEETQREKLQREKLQREKDMLLAEAFSLKQQMEEKDLDIAG 1507
Query: 326 HEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQ 385
+ +S L+ ++++ + ++ S K+K+++ +LEA D E++D G+ +M++Q
Sbjct: 1508 FTQKVVS-LEAELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGSIQMLEQ 1566
Query: 386 LSVQ-KLELEDLVSKQAEEIVDL-EALQVVSDQLQEDAKEIEIELKEEVEMARSATREVI 443
++ ++E+E + ++E+ E ++ Q+ K++E++L+EE E + A RE
Sbjct: 1567 AKLRLEMEMERMRQTHSKEMESRDEEVEEARQSCQKKLKQMEVQLEEEYEDKQKALREK- 1625
Query: 444 REKEAALESLADR 456
RE E+ L +L+D+
Sbjct: 1626 RELESKLSTLSDQ 1638
>sp|Q9HHY2|SPH2_HALSA Smc-like protein Sph2 OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=sph2 PE=3 SV=1
Length = 667
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 35/151 (23%)
Query: 313 KNKFDSRL---RDLSAHEKHEMSKLQKDIEE---KKQENAELIKSQEKLKQRVTELEADC 366
+N+ RL RDL ++ E S++Q +IEE +QE E+I ++++ QR++E+ ++
Sbjct: 350 RNRIAGRLDDLRDLVDEKRTERSEVQTEIEELRESQQELQEVIHRRDEIGQRLSEISSEI 409
Query: 367 A--------------DLHEQVDA---------ALGAEEMVQQ------LSVQKLELEDLV 397
A D+H+++ AL E+ +Q L Q+ +LE+ +
Sbjct: 410 AQRDQTLESLSEEREDVHQRLSELEEFVSEREALQESELTEQYQQLSELEYQRGQLEEEL 469
Query: 398 SKQAEEIVDLEALQVVSDQLQEDAKEIEIEL 428
S EE+ +L+ L+ DQLQ EI+ EL
Sbjct: 470 SAVREELAELDRLENERDQLQAQQDEIQAEL 500
>sp|B0R9L6|SPH2_HALS3 Smc-like protein Sph2 OS=Halobacterium salinarum (strain ATCC 29341
/ DSM 671 / R1) GN=sph2 PE=3 SV=1
Length = 667
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 35/151 (23%)
Query: 313 KNKFDSRL---RDLSAHEKHEMSKLQKDIEE---KKQENAELIKSQEKLKQRVTELEADC 366
+N+ RL RDL ++ E S++Q +IEE +QE E+I ++++ QR++E+ ++
Sbjct: 350 RNRIAGRLDDLRDLVDEKRTERSEVQTEIEELRESQQELQEVIHRRDEIGQRLSEISSEI 409
Query: 367 A--------------DLHEQVDA---------ALGAEEMVQQ------LSVQKLELEDLV 397
A D+H+++ AL E+ +Q L Q+ +LE+ +
Sbjct: 410 AQRDQTLESLSEEREDVHQRLSELEEFVSEREALQESELTEQYQQLSELEYQRGQLEEEL 469
Query: 398 SKQAEEIVDLEALQVVSDQLQEDAKEIEIEL 428
S EE+ +L+ L+ DQLQ EI+ EL
Sbjct: 470 SAVREELAELDRLENERDQLQAQQDEIQAEL 500
>sp|Q92614|MY18A_HUMAN Unconventional myosin-XVIIIa OS=Homo sapiens GN=MYO18A PE=1 SV=3
Length = 2054
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 101/193 (52%), Gaps = 10/193 (5%)
Query: 270 HEIFNNKNKFDSRLRDLSAHEIFNNNKFD----SRLRDLSAHEIFNNKNKFDSRLRDLSA 325
HE+ + +FDS L AHE K R +D+ E F+ K + + + D++
Sbjct: 1454 HELEKKQRRFDSELS--QAHEEAQREKLQREKLQREKDMLLAEAFSLKQQLEEKDMDIAG 1511
Query: 326 HEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQ 385
+ +S L+ ++++ + ++ S K+K+++ +LEA D E++D G +M++Q
Sbjct: 1512 FTQKVVS-LEAELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQ 1570
Query: 386 LSVQ-KLELEDLVSKQAEEIVDL-EALQVVSDQLQEDAKEIEIELKEEVEMARSATREVI 443
++ ++E+E + ++E+ E ++ Q+ K++E++L+EE E + RE
Sbjct: 1571 AKLRLEMEMERMRQTHSKEMESRDEEVEEARQSCQKKLKQMEVQLEEEYEDKQKVLREK- 1629
Query: 444 REKEAALESLADR 456
RE E L +L+D+
Sbjct: 1630 RELEGKLATLSDQ 1642
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 214,036,687
Number of Sequences: 539616
Number of extensions: 9392436
Number of successful extensions: 81017
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 3348
Number of HSP's that attempted gapping in prelim test: 59315
Number of HSP's gapped (non-prelim): 15285
length of query: 640
length of database: 191,569,459
effective HSP length: 124
effective length of query: 516
effective length of database: 124,657,075
effective search space: 64323050700
effective search space used: 64323050700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)