Query psy15551
Match_columns 640
No_of_seqs 252 out of 280
Neff 3.7
Searched_HMMs 46136
Date Sat Aug 17 00:12:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15551.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15551hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0971|consensus 100.0 1E-100 3E-105 846.8 54.0 465 1-639 229-785 (1243)
2 PF12455 Dynactin: Dynein asso 99.9 2.3E-25 5E-30 227.0 14.5 169 461-640 3-241 (274)
3 KOG0971|consensus 99.5 3.7E-09 7.9E-14 121.2 51.6 118 10-145 241-358 (1243)
4 COG1196 Smc Chromosome segrega 99.4 3.3E-09 7.2E-14 126.6 40.4 49 578-630 1008-1056(1163)
5 TIGR02169 SMC_prok_A chromosom 99.2 4.7E-06 1E-10 97.3 54.3 46 580-630 1019-1064(1164)
6 TIGR02168 SMC_prok_B chromosom 99.2 1.5E-06 3.2E-11 100.8 45.4 46 582-631 1031-1080(1179)
7 PRK02224 chromosome segregatio 99.0 0.00022 4.8E-09 82.7 53.9 34 122-155 408-441 (880)
8 TIGR02168 SMC_prok_B chromosom 98.9 0.00035 7.7E-09 81.4 51.7 22 574-595 1118-1139(1179)
9 TIGR02169 SMC_prok_A chromosom 98.9 0.00024 5.2E-09 83.3 47.2 18 499-516 556-580 (1164)
10 PRK02224 chromosome segregatio 98.7 0.00059 1.3E-08 79.3 44.4 79 336-414 363-446 (880)
11 PRK03918 chromosome segregatio 98.7 0.0015 3.3E-08 75.7 52.1 53 355-407 530-582 (880)
12 TIGR00606 rad50 rad50. This fa 98.7 0.0015 3.3E-08 79.9 47.1 25 360-384 937-961 (1311)
13 PF07888 CALCOCO1: Calcium bin 98.6 0.00096 2.1E-08 75.3 39.0 147 331-477 299-450 (546)
14 TIGR00606 rad50 rad50. This fa 98.5 0.0031 6.8E-08 77.3 45.2 40 6-45 698-737 (1311)
15 KOG4643|consensus 98.5 0.0024 5.1E-08 75.7 40.0 193 1-196 175-386 (1195)
16 KOG0161|consensus 98.5 0.0034 7.4E-08 79.2 43.5 94 327-420 1095-1201(1930)
17 KOG0161|consensus 98.5 0.0051 1.1E-07 77.7 44.3 150 3-158 1020-1185(1930)
18 PRK03918 chromosome segregatio 98.4 0.008 1.7E-07 69.8 47.2 20 86-105 264-283 (880)
19 COG1196 Smc Chromosome segrega 98.4 0.0084 1.8E-07 72.9 42.2 82 77-158 189-285 (1163)
20 KOG4643|consensus 98.1 0.052 1.1E-06 65.0 39.0 155 42-197 239-397 (1195)
21 KOG0996|consensus 98.0 0.022 4.9E-07 68.8 34.7 257 330-629 915-1184(1293)
22 PF00038 Filament: Intermediat 98.0 0.03 6.5E-07 57.7 35.0 90 106-199 55-144 (312)
23 PF12128 DUF3584: Protein of u 97.9 0.13 2.7E-06 63.3 48.6 24 582-605 915-938 (1201)
24 KOG0250|consensus 97.8 0.14 3E-06 62.0 37.1 134 332-475 347-485 (1074)
25 PRK04863 mukB cell division pr 97.8 0.21 4.6E-06 62.8 40.5 60 363-422 553-617 (1486)
26 PF10174 Cast: RIM-binding pro 97.8 0.14 3E-06 60.6 45.4 28 450-477 464-491 (775)
27 PF09730 BicD: Microtubule-ass 97.8 0.13 2.9E-06 60.3 44.5 114 37-159 30-147 (717)
28 PRK04863 mukB cell division pr 97.6 0.45 9.8E-06 60.0 46.3 98 500-604 605-710 (1486)
29 PF05701 WEMBL: Weak chloropla 97.6 0.24 5.2E-06 55.9 43.4 49 110-158 142-190 (522)
30 KOG0933|consensus 97.5 0.44 9.6E-06 57.5 37.9 66 85-150 688-758 (1174)
31 PRK01156 chromosome segregatio 97.5 0.38 8.3E-06 56.8 44.7 37 121-157 464-500 (895)
32 PF00038 Filament: Intermediat 97.4 0.2 4.4E-06 51.7 36.5 143 2-156 3-151 (312)
33 PF05701 WEMBL: Weak chloropla 97.4 0.36 7.9E-06 54.5 44.8 128 325-455 284-425 (522)
34 PF00261 Tropomyosin: Tropomyo 97.3 0.23 4.9E-06 50.5 29.2 136 331-476 94-229 (237)
35 KOG4674|consensus 97.3 0.99 2.2E-05 57.6 45.9 120 331-450 860-985 (1822)
36 PHA02562 46 endonuclease subun 97.3 0.36 7.8E-06 53.5 29.6 98 380-477 298-398 (562)
37 PF05622 HOOK: HOOK protein; 97.3 5.3E-05 1.1E-09 87.1 0.0 37 54-90 319-355 (713)
38 KOG4674|consensus 97.3 1.2 2.5E-05 57.1 40.4 130 344-473 1054-1203(1822)
39 KOG0996|consensus 97.3 0.91 2E-05 55.7 45.3 16 499-514 650-665 (1293)
40 PRK04778 septation ring format 97.1 0.74 1.6E-05 52.4 38.4 97 62-158 200-300 (569)
41 PF07888 CALCOCO1: Calcium bin 97.0 1 2.2E-05 51.7 37.2 43 58-100 197-239 (546)
42 KOG0976|consensus 97.0 1.3 2.9E-05 52.7 38.6 204 346-558 280-509 (1265)
43 KOG0977|consensus 97.0 0.75 1.6E-05 52.7 28.2 26 174-199 171-196 (546)
44 KOG0933|consensus 97.0 1.6 3.4E-05 53.1 41.6 95 14-115 681-775 (1174)
45 PF09730 BicD: Microtubule-ass 96.9 1.5 3.2E-05 51.9 35.3 127 70-199 23-158 (717)
46 PF01576 Myosin_tail_1: Myosin 96.9 0.00024 5.1E-09 83.7 0.0 147 2-156 45-210 (859)
47 PRK09039 hypothetical protein; 96.8 0.16 3.5E-06 54.6 20.7 139 328-477 45-184 (343)
48 PF10174 Cast: RIM-binding pro 96.8 1.8 3.8E-05 51.7 44.5 75 3-78 301-375 (775)
49 PF01576 Myosin_tail_1: Myosin 96.7 0.00037 7.9E-09 82.2 0.0 159 35-193 300-482 (859)
50 PF06160 EzrA: Septation ring 96.6 2 4.3E-05 49.1 45.3 149 29-195 23-184 (560)
51 PF12128 DUF3584: Protein of u 96.6 3.2 6.9E-05 51.5 44.3 59 126-195 476-534 (1201)
52 PHA02562 46 endonuclease subun 96.5 1.9 4.1E-05 47.9 32.0 63 352-424 332-395 (562)
53 PF12718 Tropomyosin_1: Tropom 96.5 0.34 7.3E-06 46.4 18.0 73 347-419 32-105 (143)
54 PF13851 GAS: Growth-arrest sp 96.5 0.95 2.1E-05 45.5 22.0 133 325-457 30-163 (201)
55 KOG0995|consensus 96.4 2.6 5.6E-05 48.6 42.6 105 325-429 435-545 (581)
56 PF12718 Tropomyosin_1: Tropom 96.3 0.82 1.8E-05 43.8 19.7 121 352-476 9-133 (143)
57 PF09726 Macoilin: Transmembra 96.3 3.4 7.4E-05 48.8 28.7 47 325-371 456-502 (697)
58 PF05557 MAD: Mitotic checkpoi 96.3 0.0032 7E-08 72.7 4.0 145 331-476 380-535 (722)
59 PRK01156 chromosome segregatio 96.3 3.6 7.9E-05 48.8 55.1 26 128-153 418-443 (895)
60 PF15070 GOLGA2L5: Putative go 96.1 4.2 9E-05 47.5 36.4 79 75-153 23-107 (617)
61 PF08317 Spc7: Spc7 kinetochor 96.0 1.3 2.8E-05 47.2 21.4 52 354-408 153-204 (325)
62 PF00261 Tropomyosin: Tropomyo 96.0 2.1 4.5E-05 43.6 28.1 61 122-196 11-71 (237)
63 COG1579 Zn-ribbon protein, pos 96.0 1.2 2.6E-05 46.4 20.3 78 328-406 37-114 (239)
64 KOG0963|consensus 96.0 4.5 9.9E-05 47.1 30.5 56 422-477 382-437 (629)
65 PF14662 CCDC155: Coiled-coil 96.0 2.2 4.7E-05 43.3 23.1 43 433-475 147-189 (193)
66 PF09789 DUF2353: Uncharacteri 95.9 3.2 6.9E-05 45.0 23.9 150 329-478 9-181 (319)
67 PF08317 Spc7: Spc7 kinetochor 95.9 0.53 1.1E-05 50.0 17.7 141 38-181 141-285 (325)
68 PF05622 HOOK: HOOK protein; 95.8 0.0076 1.6E-07 69.7 4.0 54 358-411 309-362 (713)
69 PRK04778 septation ring format 95.7 5.4 0.00012 45.6 40.8 47 428-474 381-427 (569)
70 KOG0977|consensus 95.5 2.6 5.6E-05 48.5 22.4 118 325-445 102-230 (546)
71 PF09789 DUF2353: Uncharacteri 95.5 1.1 2.3E-05 48.5 18.4 132 320-469 70-228 (319)
72 PRK09039 hypothetical protein; 95.5 2.1 4.6E-05 46.2 20.6 123 331-464 62-185 (343)
73 PF05667 DUF812: Protein of un 95.5 6.9 0.00015 45.6 26.4 81 397-477 396-480 (594)
74 PF04012 PspA_IM30: PspA/IM30 95.2 3.8 8.2E-05 40.8 22.4 99 324-422 25-126 (221)
75 smart00787 Spc7 Spc7 kinetocho 95.2 3.4 7.3E-05 44.4 20.7 118 353-476 147-264 (312)
76 TIGR01843 type_I_hlyD type I s 95.1 2.9 6.2E-05 44.2 19.9 24 170-193 79-102 (423)
77 PRK10698 phage shock protein P 95.1 3.8 8.3E-05 41.8 20.0 84 325-408 27-112 (222)
78 COG1579 Zn-ribbon protein, pos 94.9 5.3 0.00011 41.8 20.6 26 383-408 54-79 (239)
79 PF05911 DUF869: Plant protein 94.8 2.1 4.6E-05 51.0 19.5 142 329-470 589-759 (769)
80 PF06785 UPF0242: Uncharacteri 94.7 7.2 0.00016 42.8 21.5 188 332-537 88-292 (401)
81 TIGR01005 eps_transp_fam exopo 94.7 2.2 4.9E-05 49.7 19.4 102 325-426 204-334 (754)
82 PF13851 GAS: Growth-arrest sp 94.6 5.6 0.00012 40.1 21.0 121 325-445 44-172 (201)
83 KOG0964|consensus 94.5 16 0.00035 44.9 37.8 95 380-475 396-491 (1200)
84 TIGR03185 DNA_S_dndD DNA sulfu 94.1 15 0.00032 42.7 32.3 143 36-193 135-283 (650)
85 PF13870 DUF4201: Domain of un 94.1 6.2 0.00013 38.3 21.6 143 335-487 5-148 (177)
86 PF14662 CCDC155: Coiled-coil 94.0 8 0.00017 39.4 21.6 75 327-408 20-94 (193)
87 KOG0980|consensus 94.0 10 0.00023 45.9 22.5 151 319-470 390-549 (980)
88 COG0419 SbcC ATPase involved i 93.9 19 0.00042 43.4 44.8 19 583-601 820-838 (908)
89 TIGR01843 type_I_hlyD type I s 93.8 7.4 0.00016 41.2 19.4 25 452-476 247-271 (423)
90 COG2433 Uncharacterized conser 93.7 1.2 2.7E-05 51.5 14.1 86 375-465 423-509 (652)
91 PF13514 AAA_27: AAA domain 93.6 25 0.00053 43.5 44.7 86 111-196 665-750 (1111)
92 PF05557 MAD: Mitotic checkpoi 93.5 0.02 4.4E-07 66.3 0.0 125 328-453 290-415 (722)
93 PF08614 ATG16: Autophagy prot 93.5 1.3 2.8E-05 43.8 12.4 88 334-424 72-160 (194)
94 KOG0612|consensus 93.5 27 0.0006 43.8 38.5 107 325-443 670-780 (1317)
95 KOG0250|consensus 93.4 26 0.00057 43.4 45.2 82 107-194 381-465 (1074)
96 KOG0994|consensus 93.3 29 0.00063 43.6 25.7 72 124-195 1413-1484(1758)
97 PF04849 HAP1_N: HAP1 N-termin 93.1 15 0.00032 39.8 21.6 86 377-465 216-304 (306)
98 TIGR02977 phageshock_pspA phag 93.1 11 0.00024 38.1 23.5 94 325-418 27-123 (219)
99 COG5185 HEC1 Protein involved 93.1 6.6 0.00014 44.8 18.1 122 348-472 300-428 (622)
100 KOG0999|consensus 93.0 22 0.00048 41.5 26.0 83 354-436 167-256 (772)
101 PF09726 Macoilin: Transmembra 93.0 25 0.00054 41.9 29.5 40 369-408 616-656 (697)
102 TIGR03017 EpsF chain length de 93.0 15 0.00033 39.8 20.6 102 325-426 181-300 (444)
103 TIGR03007 pepcterm_ChnLen poly 92.8 5.4 0.00012 44.1 17.3 41 385-425 251-292 (498)
104 KOG0980|consensus 92.8 30 0.00064 42.3 31.8 106 369-477 401-513 (980)
105 PF12325 TMF_TATA_bd: TATA ele 92.6 4.1 9E-05 38.4 13.6 63 331-393 25-87 (120)
106 smart00787 Spc7 Spc7 kinetocho 92.5 16 0.00034 39.4 19.7 175 228-408 47-231 (312)
107 PF10168 Nup88: Nuclear pore c 92.4 2.4 5.1E-05 50.2 14.4 42 336-377 579-620 (717)
108 PF09755 DUF2046: Uncharacteri 92.3 19 0.00042 39.0 27.8 97 381-477 135-248 (310)
109 TIGR00634 recN DNA repair prot 92.2 25 0.00055 40.1 23.8 56 128-188 170-225 (563)
110 PF06818 Fez1: Fez1; InterPro 92.0 2.9 6.3E-05 42.7 12.8 122 75-196 15-155 (202)
111 KOG4593|consensus 91.9 33 0.00072 40.9 41.4 124 351-474 392-526 (716)
112 PF04849 HAP1_N: HAP1 N-termin 91.9 22 0.00047 38.6 21.5 22 174-195 169-190 (306)
113 PF04156 IncA: IncA protein; 91.7 14 0.00029 36.0 17.9 69 337-408 82-150 (191)
114 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.3 13 0.00028 34.9 19.3 29 426-454 101-129 (132)
115 COG2433 Uncharacterized conser 91.2 5.4 0.00012 46.5 15.1 82 327-408 420-501 (652)
116 PF10186 Atg14: UV radiation r 90.8 20 0.00044 36.3 20.1 63 355-417 25-93 (302)
117 PRK10929 putative mechanosensi 90.7 55 0.0012 41.1 37.2 146 331-477 267-430 (1109)
118 PRK10884 SH3 domain-containing 90.5 4.7 0.0001 41.0 12.5 78 325-415 89-167 (206)
119 KOG0612|consensus 90.5 59 0.0013 41.1 36.8 25 451-475 742-766 (1317)
120 TIGR03007 pepcterm_ChnLen poly 90.4 33 0.00071 38.1 24.2 35 122-156 157-191 (498)
121 KOG0978|consensus 90.4 47 0.001 39.8 37.5 104 356-477 516-620 (698)
122 TIGR03185 DNA_S_dndD DNA sulfu 90.2 42 0.00092 39.0 38.2 74 350-424 391-465 (650)
123 COG1340 Uncharacterized archae 90.1 31 0.00067 37.3 19.9 147 331-477 57-212 (294)
124 KOG0963|consensus 89.6 50 0.0011 39.0 33.8 43 119-161 226-270 (629)
125 TIGR02680 conserved hypothetic 89.6 71 0.0015 40.7 35.3 67 124-192 798-864 (1353)
126 PF10146 zf-C4H2: Zinc finger- 89.2 8.9 0.00019 39.8 13.5 94 55-148 6-103 (230)
127 PF13514 AAA_27: AAA domain 89.1 68 0.0015 39.8 35.8 81 112-195 787-867 (1111)
128 COG3883 Uncharacterized protei 88.8 36 0.00078 36.3 20.6 145 325-475 41-207 (265)
129 PF06818 Fez1: Fez1; InterPro 88.5 32 0.0007 35.4 19.7 152 325-476 13-184 (202)
130 PF15070 GOLGA2L5: Putative go 88.5 59 0.0013 38.3 37.5 63 128-192 38-100 (617)
131 KOG0018|consensus 88.0 82 0.0018 39.4 40.6 48 487-538 520-575 (1141)
132 PRK11281 hypothetical protein; 87.7 88 0.0019 39.4 36.8 81 103-189 58-138 (1113)
133 COG3883 Uncharacterized protei 87.6 43 0.00094 35.8 23.7 58 359-419 47-105 (265)
134 PF10473 CENP-F_leu_zip: Leuci 87.5 29 0.00063 33.7 17.5 26 383-408 75-100 (140)
135 KOG0243|consensus 87.3 65 0.0014 40.2 20.8 17 331-347 406-422 (1041)
136 KOG2129|consensus 87.3 59 0.0013 37.0 22.8 40 2-41 63-102 (552)
137 PLN03229 acetyl-coenzyme A car 87.2 23 0.0005 42.5 16.7 57 126-188 649-712 (762)
138 COG5185 HEC1 Protein involved 87.0 65 0.0014 37.2 32.1 87 333-419 484-576 (622)
139 TIGR01000 bacteriocin_acc bact 87.0 45 0.00098 37.0 18.2 25 169-193 94-118 (457)
140 PF11932 DUF3450: Protein of u 86.8 40 0.00086 34.6 16.8 35 441-475 128-163 (251)
141 PF12777 MT: Microtubule-bindi 86.6 51 0.0011 35.6 25.6 72 333-407 239-310 (344)
142 PF09304 Cortex-I_coil: Cortex 86.6 29 0.00062 32.6 14.2 24 328-351 15-38 (107)
143 COG0419 SbcC ATPase involved i 86.4 86 0.0019 38.0 51.9 17 582-598 856-872 (908)
144 PLN02939 transferase, transfer 86.4 97 0.0021 38.6 28.5 51 355-412 298-348 (977)
145 PF10211 Ax_dynein_light: Axon 86.3 39 0.00084 33.9 15.7 69 379-447 118-187 (189)
146 PF10168 Nup88: Nuclear pore c 86.1 40 0.00087 40.3 18.1 102 350-454 558-663 (717)
147 PF08614 ATG16: Autophagy prot 86.0 8.2 0.00018 38.2 10.8 12 325-336 34-45 (194)
148 KOG0964|consensus 85.9 1E+02 0.0022 38.5 47.4 117 3-126 335-458 (1200)
149 PF10498 IFT57: Intra-flagella 85.7 50 0.0011 36.4 17.4 56 126-193 287-342 (359)
150 PF04100 Vps53_N: Vps53-like, 85.7 62 0.0014 35.7 23.1 109 308-424 12-128 (383)
151 PF13870 DUF4201: Domain of un 85.6 37 0.0008 33.0 21.4 160 3-193 6-166 (177)
152 PF15619 Lebercilin: Ciliary p 85.3 45 0.00097 33.8 19.3 81 326-408 65-145 (194)
153 PF09728 Taxilin: Myosin-like 85.3 58 0.0013 35.0 38.2 78 7-99 19-96 (309)
154 KOG0979|consensus 85.0 1.1E+02 0.0025 38.1 21.6 103 374-477 255-358 (1072)
155 PF04111 APG6: Autophagy prote 84.6 26 0.00057 37.6 14.4 28 610-638 281-308 (314)
156 PRK09343 prefoldin subunit bet 84.6 27 0.00059 32.6 12.8 92 369-460 9-108 (121)
157 PRK10884 SH3 domain-containing 84.6 20 0.00043 36.6 12.9 50 353-408 89-138 (206)
158 TIGR00634 recN DNA repair prot 84.4 83 0.0018 36.1 19.5 65 325-389 164-234 (563)
159 KOG4657|consensus 84.3 27 0.00059 36.6 13.8 83 310-406 43-125 (246)
160 KOG4302|consensus 84.3 29 0.00062 41.2 15.6 136 340-475 51-198 (660)
161 COG4942 Membrane-bound metallo 84.2 81 0.0018 35.8 23.9 45 329-373 38-82 (420)
162 KOG1029|consensus 84.0 1.1E+02 0.0025 37.3 32.3 115 337-455 466-588 (1118)
163 PF10186 Atg14: UV radiation r 83.9 52 0.0011 33.4 20.9 42 380-421 62-104 (302)
164 COG1842 PspA Phage shock prote 83.8 58 0.0013 33.8 21.3 82 327-408 29-112 (225)
165 COG1382 GimC Prefoldin, chaper 83.8 34 0.00075 32.6 13.1 78 384-461 23-108 (119)
166 PF05911 DUF869: Plant protein 83.5 1.2E+02 0.0025 37.0 20.3 113 363-475 560-690 (769)
167 KOG4809|consensus 82.7 1E+02 0.0022 36.3 18.5 42 332-373 327-368 (654)
168 KOG0946|consensus 82.7 1.3E+02 0.0028 37.0 29.3 25 132-156 736-760 (970)
169 KOG1029|consensus 82.4 1.3E+02 0.0028 36.9 33.6 27 125-151 436-462 (1118)
170 PF15254 CCDC14: Coiled-coil d 82.3 98 0.0021 37.7 18.8 107 366-475 436-553 (861)
171 PF13166 AAA_13: AAA domain 82.3 1E+02 0.0023 35.7 21.7 34 383-416 365-399 (712)
172 COG4372 Uncharacterized protei 81.9 99 0.0021 35.1 23.3 141 330-471 124-272 (499)
173 PF03962 Mnd1: Mnd1 family; I 81.6 25 0.00053 35.3 12.1 75 106-195 84-158 (188)
174 KOG0804|consensus 81.4 78 0.0017 36.3 16.8 43 412-454 403-445 (493)
175 KOG0995|consensus 81.3 1.2E+02 0.0026 35.7 38.3 112 73-192 220-352 (581)
176 KOG0804|consensus 81.3 99 0.0021 35.5 17.5 46 392-445 379-425 (493)
177 PF01920 Prefoldin_2: Prefoldi 81.1 27 0.00059 30.3 10.9 84 335-418 4-100 (106)
178 PRK03947 prefoldin subunit alp 80.5 50 0.0011 30.8 14.3 92 329-421 6-135 (140)
179 COG4026 Uncharacterized protei 80.5 15 0.00033 38.6 10.3 66 333-408 132-197 (290)
180 KOG0946|consensus 80.4 1.5E+02 0.0033 36.4 29.3 72 345-416 801-877 (970)
181 TIGR01005 eps_transp_fam exopo 80.0 1.3E+02 0.0029 35.4 25.9 37 121-157 189-225 (754)
182 PRK10698 phage shock protein P 79.9 76 0.0017 32.5 15.5 130 55-184 24-178 (222)
183 PF12325 TMF_TATA_bd: TATA ele 79.6 57 0.0012 30.9 15.2 85 315-402 20-110 (120)
184 PF11932 DUF3450: Protein of u 79.3 80 0.0017 32.4 16.5 123 333-465 39-173 (251)
185 COG4942 Membrane-bound metallo 78.5 1.3E+02 0.0027 34.3 22.3 47 328-374 58-104 (420)
186 PF15397 DUF4618: Domain of un 78.3 99 0.0022 33.0 22.3 33 442-474 191-223 (258)
187 KOG1937|consensus 77.7 1.4E+02 0.0031 34.4 22.6 15 527-541 447-461 (521)
188 KOG4807|consensus 77.5 1.4E+02 0.003 34.1 18.6 84 76-161 351-442 (593)
189 KOG0994|consensus 77.0 2.3E+02 0.0049 36.4 37.7 32 127-158 1543-1574(1758)
190 KOG0249|consensus 77.0 1.8E+02 0.0038 35.5 18.4 105 360-464 135-257 (916)
191 COG0216 PrfA Protein chain rel 76.3 43 0.00092 37.1 12.6 50 99-153 54-103 (363)
192 cd00632 Prefoldin_beta Prefold 76.2 54 0.0012 29.5 11.5 89 382-470 14-103 (105)
193 PF07926 TPR_MLP1_2: TPR/MLP1/ 73.8 80 0.0017 29.6 18.0 41 368-408 32-72 (132)
194 PF14915 CCDC144C: CCDC144C pr 73.8 1.4E+02 0.0031 32.6 27.6 114 325-445 80-201 (305)
195 PF05010 TACC: Transforming ac 73.7 1.1E+02 0.0025 31.4 20.8 110 342-451 68-189 (207)
196 PF10146 zf-C4H2: Zinc finger- 73.5 1.2E+02 0.0026 31.6 16.0 48 426-473 56-103 (230)
197 PF04111 APG6: Autophagy prote 73.5 43 0.00093 36.0 11.8 12 507-518 216-227 (314)
198 PRK13729 conjugal transfer pil 73.3 12 0.00025 42.8 7.9 8 512-519 212-220 (475)
199 KOG0978|consensus 73.3 2.2E+02 0.0047 34.4 45.8 212 328-565 467-684 (698)
200 TIGR02338 gimC_beta prefoldin, 72.8 75 0.0016 28.9 13.2 84 334-417 8-104 (110)
201 PF11559 ADIP: Afadin- and alp 72.4 89 0.0019 29.6 16.6 61 386-446 85-149 (151)
202 PF04582 Reo_sigmaC: Reovirus 72.1 8 0.00017 42.2 6.0 13 360-372 38-50 (326)
203 PF07106 TBPIP: Tat binding pr 71.9 25 0.00053 34.0 8.8 22 381-402 116-137 (169)
204 PF09787 Golgin_A5: Golgin sub 71.9 1.9E+02 0.0041 33.1 34.5 90 454-553 388-492 (511)
205 PF10046 BLOC1_2: Biogenesis o 71.7 77 0.0017 28.6 12.5 74 328-408 13-86 (99)
206 COG3206 GumC Uncharacterized p 71.6 1.7E+02 0.0037 32.5 16.6 129 345-473 241-385 (458)
207 cd00632 Prefoldin_beta Prefold 71.3 78 0.0017 28.4 14.1 42 379-420 61-103 (105)
208 PRK11281 hypothetical protein; 70.9 3E+02 0.0065 35.0 40.7 147 331-477 287-454 (1113)
209 PF01920 Prefoldin_2: Prefoldi 70.9 48 0.001 28.8 9.7 34 426-459 65-98 (106)
210 PRK00409 recombination and DNA 70.9 1.2E+02 0.0025 36.8 15.7 49 377-425 516-565 (782)
211 PF06005 DUF904: Protein of un 70.7 27 0.0006 30.3 7.9 50 329-378 18-67 (72)
212 TIGR01000 bacteriocin_acc bact 70.7 1.8E+02 0.0039 32.4 17.8 24 452-475 292-315 (457)
213 PF02994 Transposase_22: L1 tr 69.8 15 0.00033 40.2 7.6 48 427-474 141-188 (370)
214 PF04012 PspA_IM30: PspA/IM30 69.3 1.3E+02 0.0027 30.1 18.1 101 355-465 28-133 (221)
215 PF15397 DUF4618: Domain of un 69.2 1.7E+02 0.0036 31.4 20.9 24 454-477 189-212 (258)
216 PF07106 TBPIP: Tat binding pr 69.1 50 0.0011 31.9 10.2 50 358-408 87-136 (169)
217 PF15619 Lebercilin: Ciliary p 69.0 1.4E+02 0.003 30.4 23.1 82 328-419 18-100 (194)
218 KOG4673|consensus 69.0 2.8E+02 0.006 33.9 38.1 48 427-474 715-762 (961)
219 KOG0249|consensus 68.5 2.6E+02 0.0056 34.2 17.2 37 121-157 211-247 (916)
220 KOG4360|consensus 68.4 86 0.0019 36.6 13.1 36 330-365 213-248 (596)
221 PRK00846 hypothetical protein; 68.2 44 0.00095 29.6 8.7 35 385-419 3-38 (77)
222 TIGR02338 gimC_beta prefoldin, 68.2 95 0.0021 28.2 12.7 86 373-458 9-102 (110)
223 KOG4657|consensus 67.5 1.7E+02 0.0038 31.0 17.2 106 362-467 20-130 (246)
224 PF10473 CENP-F_leu_zip: Leuci 67.2 1.3E+02 0.0028 29.4 19.1 49 428-476 85-137 (140)
225 TIGR00293 prefoldin, archaeal 66.7 48 0.001 30.3 9.1 36 380-415 85-121 (126)
226 PF06810 Phage_GP20: Phage min 66.7 35 0.00076 33.3 8.6 21 354-374 17-37 (155)
227 PLN02939 transferase, transfer 66.6 3.4E+02 0.0075 34.1 18.6 74 111-189 285-368 (977)
228 PF06810 Phage_GP20: Phage min 66.5 33 0.00072 33.5 8.5 41 332-372 9-49 (155)
229 PLN03229 acetyl-coenzyme A car 66.4 3.1E+02 0.0067 33.5 24.2 22 84-105 432-453 (762)
230 KOG1760|consensus 66.0 96 0.0021 30.1 11.0 91 52-156 15-118 (131)
231 TIGR03017 EpsF chain length de 66.0 2.1E+02 0.0045 31.3 25.0 35 122-156 167-201 (444)
232 PRK10361 DNA recombination pro 65.9 2.6E+02 0.0056 32.4 20.9 44 398-441 109-158 (475)
233 PF10498 IFT57: Intra-flagella 65.8 2.2E+02 0.0048 31.6 17.6 37 389-425 281-318 (359)
234 COG1730 GIM5 Predicted prefold 65.8 1.4E+02 0.003 29.3 14.2 94 381-474 20-138 (145)
235 PF07111 HCR: Alpha helical co 65.7 3.1E+02 0.0068 33.3 41.4 135 341-485 512-659 (739)
236 TIGR03752 conj_TIGR03752 integ 65.5 69 0.0015 36.8 11.8 79 316-407 57-135 (472)
237 KOG0239|consensus 65.3 3E+02 0.0065 33.1 17.3 26 394-419 240-266 (670)
238 KOG0962|consensus 65.0 4.1E+02 0.0089 34.4 32.6 62 126-195 237-298 (1294)
239 PF05667 DUF812: Protein of un 64.9 2.9E+02 0.0063 32.7 33.3 92 384-475 487-588 (594)
240 PRK04406 hypothetical protein; 64.6 43 0.00093 29.3 7.9 28 393-420 9-37 (75)
241 PRK03947 prefoldin subunit alp 64.5 1.2E+02 0.0027 28.2 14.0 46 427-472 91-136 (140)
242 PF15066 CAGE1: Cancer-associa 64.5 2.8E+02 0.006 32.3 19.1 129 347-476 335-471 (527)
243 PF12329 TMF_DNA_bd: TATA elem 64.5 78 0.0017 27.4 9.4 36 336-371 5-40 (74)
244 PRK09841 cryptic autophosphory 64.5 3.1E+02 0.0066 32.7 18.0 29 345-373 269-297 (726)
245 KOG0999|consensus 64.2 3.1E+02 0.0067 32.7 42.8 49 327-375 316-364 (772)
246 PRK00736 hypothetical protein; 63.6 37 0.00079 29.0 7.2 30 392-421 2-32 (68)
247 COG4026 Uncharacterized protei 63.4 52 0.0011 34.8 9.5 71 325-398 138-208 (290)
248 PF15294 Leu_zip: Leucine zipp 63.4 2.2E+02 0.0048 30.8 14.9 45 327-371 130-174 (278)
249 PRK00295 hypothetical protein; 63.3 42 0.00091 28.7 7.5 28 393-420 3-31 (68)
250 PF09787 Golgin_A5: Golgin sub 63.1 2.8E+02 0.006 31.8 29.4 83 106-195 215-297 (511)
251 PF10481 CENP-F_N: Cenp-F N-te 63.0 2.2E+02 0.0049 31.0 14.2 72 88-162 60-131 (307)
252 KOG0243|consensus 62.7 4.1E+02 0.0089 33.6 20.7 12 177-188 189-200 (1041)
253 PF10212 TTKRSYEDQ: Predicted 61.7 2.7E+02 0.006 32.5 15.6 95 340-454 417-511 (518)
254 cd00890 Prefoldin Prefoldin is 61.6 1.2E+02 0.0027 27.2 12.2 92 379-470 11-127 (129)
255 PF05483 SCP-1: Synaptonemal c 61.0 3.8E+02 0.0082 32.6 44.0 38 58-95 336-374 (786)
256 PF09486 HrpB7: Bacterial type 61.0 1.8E+02 0.0039 28.9 19.3 121 345-475 17-145 (158)
257 COG1842 PspA Phage shock prote 60.7 2.2E+02 0.0047 29.7 17.6 107 355-471 29-140 (225)
258 KOG0018|consensus 60.1 4.6E+02 0.01 33.4 35.6 37 122-158 209-245 (1141)
259 PF05483 SCP-1: Synaptonemal c 60.0 3.9E+02 0.0085 32.5 45.4 131 354-487 584-731 (786)
260 PF13166 AAA_13: AAA domain 59.9 3.3E+02 0.0072 31.6 21.4 18 391-408 366-383 (712)
261 PF04102 SlyX: SlyX; InterPro 59.6 50 0.0011 28.1 7.3 15 394-408 3-17 (69)
262 TIGR02680 conserved hypothetic 59.5 5E+02 0.011 33.6 41.2 147 4-158 221-393 (1353)
263 PF00769 ERM: Ezrin/radixin/mo 59.4 2.3E+02 0.005 29.6 16.1 66 76-141 49-118 (246)
264 PF07200 Mod_r: Modifier of ru 59.3 1.6E+02 0.0034 27.7 16.2 56 366-424 29-85 (150)
265 PRK10869 recombination and rep 59.1 3.4E+02 0.0074 31.5 26.0 52 132-188 170-221 (553)
266 KOG4603|consensus 58.9 2.2E+02 0.0048 29.2 14.3 91 381-477 79-182 (201)
267 KOG1003|consensus 58.9 2.3E+02 0.005 29.5 18.6 35 377-411 42-76 (205)
268 PRK04325 hypothetical protein; 58.8 68 0.0015 27.8 8.1 23 386-408 7-29 (74)
269 TIGR02231 conserved hypothetic 58.4 97 0.0021 35.1 11.5 27 330-356 72-98 (525)
270 PF08172 CASP_C: CASP C termin 58.4 1.1E+02 0.0023 32.3 10.9 39 380-418 78-117 (248)
271 PF07989 Microtub_assoc: Micro 58.1 1.2E+02 0.0026 26.5 9.5 64 380-444 6-71 (75)
272 TIGR01069 mutS2 MutS2 family p 57.9 2E+02 0.0042 34.9 14.3 31 378-408 512-542 (771)
273 KOG0979|consensus 57.0 5.1E+02 0.011 32.8 25.9 97 325-421 251-359 (1072)
274 PF12761 End3: Actin cytoskele 56.9 77 0.0017 32.6 9.3 47 1-47 101-151 (195)
275 PRK02793 phi X174 lysis protei 56.7 82 0.0018 27.2 8.2 28 393-420 6-34 (72)
276 PRK10361 DNA recombination pro 56.5 3.7E+02 0.0081 31.1 22.9 13 456-468 145-157 (475)
277 PF05529 Bap31: B-cell recepto 56.2 75 0.0016 31.3 9.0 35 124-158 152-186 (192)
278 KOG4001|consensus 56.2 1.2E+02 0.0027 31.7 10.6 73 375-447 179-252 (259)
279 PF04100 Vps53_N: Vps53-like, 56.1 3.2E+02 0.007 30.3 20.6 43 429-471 56-98 (383)
280 PF05384 DegS: Sensor protein 55.8 2.2E+02 0.0048 28.3 18.2 93 383-476 50-144 (159)
281 PF02994 Transposase_22: L1 tr 55.7 32 0.00069 37.8 6.9 38 377-414 126-164 (370)
282 KOG0972|consensus 55.2 3.3E+02 0.0072 30.2 14.7 63 123-197 291-353 (384)
283 PF05266 DUF724: Protein of un 55.2 2.4E+02 0.0051 28.7 12.4 39 327-372 108-146 (190)
284 COG1382 GimC Prefoldin, chaper 54.6 2E+02 0.0044 27.5 12.4 87 331-417 8-107 (119)
285 KOG0288|consensus 54.5 2.9E+02 0.0062 31.8 13.8 62 309-374 4-65 (459)
286 PF09738 DUF2051: Double stran 54.0 3.1E+02 0.0067 29.9 13.8 7 532-538 219-225 (302)
287 KOG1899|consensus 54.0 4.8E+02 0.01 31.7 15.9 75 331-408 113-194 (861)
288 PF06785 UPF0242: Uncharacteri 53.9 3.7E+02 0.0079 30.3 22.6 61 561-626 277-342 (401)
289 PRK02119 hypothetical protein; 53.9 91 0.002 27.0 8.0 22 386-407 7-28 (73)
290 PF06705 SF-assemblin: SF-asse 53.8 2.7E+02 0.0058 28.7 22.8 73 327-407 39-111 (247)
291 KOG1853|consensus 53.6 3.3E+02 0.0071 29.6 19.1 29 560-588 284-312 (333)
292 PF06160 EzrA: Septation ring 53.5 4.2E+02 0.009 30.8 45.7 28 120-147 188-215 (560)
293 cd00584 Prefoldin_alpha Prefol 53.2 1.8E+02 0.004 26.6 12.1 40 379-418 85-125 (129)
294 TIGR02894 DNA_bind_RsfA transc 53.1 77 0.0017 31.8 8.4 52 325-376 100-151 (161)
295 KOG4677|consensus 53.0 4.3E+02 0.0093 30.8 20.0 154 6-182 248-409 (554)
296 cd00890 Prefoldin Prefoldin is 52.9 1.7E+02 0.0038 26.3 12.0 41 379-419 85-126 (129)
297 TIGR02231 conserved hypothetic 52.9 1.6E+02 0.0034 33.5 12.0 25 362-386 83-107 (525)
298 PF04899 MbeD_MobD: MbeD/MobD 52.8 1.6E+02 0.0034 25.7 9.8 48 322-372 3-50 (70)
299 PF15035 Rootletin: Ciliary ro 52.5 2.6E+02 0.0057 28.2 13.9 24 351-374 17-40 (182)
300 PF06632 XRCC4: DNA double-str 51.9 3.7E+02 0.0081 29.7 14.4 69 378-452 141-209 (342)
301 PF10481 CENP-F_N: Cenp-F N-te 51.1 3.7E+02 0.0079 29.5 16.7 119 327-476 16-134 (307)
302 PF06008 Laminin_I: Laminin Do 51.0 3E+02 0.0066 28.4 20.3 31 446-476 173-203 (264)
303 PF09738 DUF2051: Double stran 50.4 2.9E+02 0.0063 30.1 12.9 10 188-197 17-26 (302)
304 PF09744 Jnk-SapK_ap_N: JNK_SA 50.4 2.7E+02 0.0058 27.6 12.5 28 381-408 36-63 (158)
305 COG4372 Uncharacterized protei 50.1 4.5E+02 0.0097 30.2 23.4 78 331-408 83-164 (499)
306 COG1340 Uncharacterized archae 50.1 3.8E+02 0.0082 29.3 37.0 54 126-187 69-122 (294)
307 PF15456 Uds1: Up-regulated Du 50.0 2.4E+02 0.0051 26.9 12.0 80 380-460 21-111 (124)
308 PRK10246 exonuclease subunit S 49.3 6.3E+02 0.014 31.7 39.9 45 426-470 825-869 (1047)
309 KOG0982|consensus 49.1 4.8E+02 0.01 30.2 20.2 187 277-477 181-379 (502)
310 PF09325 Vps5: Vps5 C terminal 49.1 2.8E+02 0.006 27.5 22.0 90 427-516 139-236 (236)
311 PF09304 Cortex-I_coil: Cortex 49.0 2.4E+02 0.0052 26.7 13.2 77 326-412 27-104 (107)
312 PF12329 TMF_DNA_bd: TATA elem 48.3 1.8E+02 0.004 25.2 9.3 51 325-375 8-58 (74)
313 PF10205 KLRAQ: Predicted coil 48.1 2.4E+02 0.0052 26.4 11.0 55 353-407 15-73 (102)
314 PF10046 BLOC1_2: Biogenesis o 48.0 2.1E+02 0.0046 25.8 12.5 44 369-415 12-56 (99)
315 TIGR01010 BexC_CtrB_KpsE polys 47.8 3.8E+02 0.0083 28.7 15.9 27 346-372 173-199 (362)
316 COG2900 SlyX Uncharacterized p 47.8 1.2E+02 0.0025 26.9 7.7 33 391-423 4-37 (72)
317 PF09728 Taxilin: Myosin-like 47.5 4E+02 0.0087 28.8 32.3 19 175-193 81-99 (309)
318 KOG1962|consensus 47.2 93 0.002 32.5 8.3 41 354-397 169-209 (216)
319 TIGR02977 phageshock_pspA phag 46.9 3.3E+02 0.0071 27.7 18.2 82 383-464 47-133 (219)
320 TIGR03752 conj_TIGR03752 integ 46.8 1.9E+02 0.0042 33.4 11.3 72 325-405 69-140 (472)
321 PF06156 DUF972: Protein of un 46.4 48 0.001 30.8 5.6 53 308-364 5-57 (107)
322 PF14712 Snapin_Pallidin: Snap 46.3 2E+02 0.0043 25.0 11.1 34 381-414 14-48 (92)
323 PF05278 PEARLI-4: Arabidopsis 46.2 3.7E+02 0.0079 29.1 12.6 98 59-192 158-255 (269)
324 PRK11519 tyrosine kinase; Prov 46.0 5.9E+02 0.013 30.4 19.2 28 345-372 269-296 (719)
325 COG3352 FlaC Putative archaeal 45.8 2.2E+02 0.0047 28.6 10.1 79 366-444 49-129 (157)
326 COG0497 RecN ATPase involved i 45.8 5.8E+02 0.013 30.2 24.0 60 130-195 168-227 (557)
327 smart00502 BBC B-Box C-termina 45.6 2.1E+02 0.0045 25.0 15.8 28 448-475 76-103 (127)
328 PF04582 Reo_sigmaC: Reovirus 45.6 48 0.001 36.4 6.2 111 345-459 37-148 (326)
329 PF02403 Seryl_tRNA_N: Seryl-t 45.5 1.4E+02 0.0031 26.6 8.3 18 386-403 79-96 (108)
330 PF02403 Seryl_tRNA_N: Seryl-t 45.3 1.8E+02 0.004 25.9 9.0 26 383-408 69-94 (108)
331 PF02996 Prefoldin: Prefoldin 45.1 49 0.0011 29.6 5.4 47 426-472 73-119 (120)
332 PF05529 Bap31: B-cell recepto 45.0 1.5E+02 0.0033 29.1 9.2 12 184-195 30-41 (192)
333 TIGR03545 conserved hypothetic 44.5 2.6E+02 0.0057 32.7 12.2 58 60-120 219-277 (555)
334 PF09744 Jnk-SapK_ap_N: JNK_SA 44.4 3.3E+02 0.0072 27.0 14.0 31 337-367 51-81 (158)
335 PF15456 Uds1: Up-regulated Du 44.3 2.9E+02 0.0063 26.4 11.7 40 336-376 22-61 (124)
336 PRK10929 putative mechanosensi 44.2 8E+02 0.017 31.4 38.5 51 358-408 235-285 (1109)
337 TIGR00020 prfB peptide chain r 44.2 5E+02 0.011 29.1 13.8 57 88-148 56-114 (364)
338 PRK13729 conjugal transfer pil 44.1 82 0.0018 36.2 8.0 27 382-408 91-117 (475)
339 PF08826 DMPK_coil: DMPK coile 43.6 2.1E+02 0.0044 24.5 8.4 27 380-406 31-57 (61)
340 PF03194 LUC7: LUC7 N_terminus 43.5 1.1E+02 0.0023 32.3 8.2 13 245-257 37-49 (254)
341 PF05531 NPV_P10: Nucleopolyhe 43.2 1.1E+02 0.0024 27.2 6.9 51 358-408 12-62 (75)
342 COG3074 Uncharacterized protei 43.2 78 0.0017 28.1 5.9 31 127-157 5-35 (79)
343 PF05103 DivIVA: DivIVA protei 43.1 4.6 0.0001 36.6 -1.5 43 332-374 28-70 (131)
344 PRK04406 hypothetical protein; 42.0 1.3E+02 0.0028 26.3 7.2 21 388-408 11-31 (75)
345 PF10212 TTKRSYEDQ: Predicted 40.9 6.4E+02 0.014 29.7 14.3 37 342-378 433-469 (518)
346 cd00584 Prefoldin_alpha Prefol 40.7 2.9E+02 0.0063 25.3 12.4 37 386-422 85-122 (129)
347 PF05377 FlaC_arch: Flagella a 40.5 1.3E+02 0.0029 25.3 6.7 39 427-465 4-42 (55)
348 PRK10636 putative ABC transpor 40.4 1.7E+02 0.0037 34.2 10.1 56 353-408 566-625 (638)
349 PF05103 DivIVA: DivIVA protei 40.1 17 0.00036 33.0 1.6 14 388-401 39-52 (131)
350 PRK04325 hypothetical protein; 40.0 1.2E+02 0.0026 26.3 6.7 31 392-422 6-37 (74)
351 PRK13169 DNA replication intia 40.0 66 0.0014 30.2 5.4 51 308-362 5-55 (110)
352 PF01442 Apolipoprotein: Apoli 39.5 3.1E+02 0.0068 25.4 17.8 27 410-436 91-117 (202)
353 PF06120 Phage_HK97_TLTM: Tail 39.3 5.5E+02 0.012 28.1 17.5 20 453-472 143-162 (301)
354 TIGR01010 BexC_CtrB_KpsE polys 39.0 5.2E+02 0.011 27.8 13.8 30 35-64 178-207 (362)
355 KOG3809|consensus 38.9 5E+02 0.011 30.2 12.8 123 353-475 443-577 (583)
356 PF04912 Dynamitin: Dynamitin 38.8 5.7E+02 0.012 28.1 18.8 56 128-191 89-144 (388)
357 TIGR00293 prefoldin, archaeal 38.8 3.1E+02 0.0067 25.1 10.3 38 384-421 82-120 (126)
358 PF09602 PhaP_Bmeg: Polyhydrox 38.8 4.3E+02 0.0094 26.7 19.3 55 368-422 70-128 (165)
359 KOG4593|consensus 37.9 8.4E+02 0.018 29.8 41.0 74 111-199 151-224 (716)
360 PF05377 FlaC_arch: Flagella a 37.5 1.7E+02 0.0037 24.7 6.9 14 370-383 34-47 (55)
361 PF13747 DUF4164: Domain of un 36.8 3.2E+02 0.0068 24.6 10.4 58 351-408 9-66 (89)
362 KOG0962|consensus 36.7 1.1E+03 0.024 30.8 38.5 46 59-104 863-908 (1294)
363 PF09731 Mitofilin: Mitochondr 36.4 7.1E+02 0.015 28.6 23.2 30 312-345 245-274 (582)
364 KOG1003|consensus 36.4 5.2E+02 0.011 27.0 25.6 103 350-476 95-197 (205)
365 PF03915 AIP3: Actin interacti 36.1 2.6E+02 0.0057 31.8 10.3 119 3-156 151-269 (424)
366 PF05010 TACC: Transforming ac 35.7 5.2E+02 0.011 26.8 23.4 80 329-408 9-96 (207)
367 KOG1510|consensus 35.5 1.6E+02 0.0034 29.0 7.3 42 329-370 91-132 (139)
368 PF10211 Ax_dynein_light: Axon 35.3 4.8E+02 0.01 26.2 16.0 70 377-447 110-180 (189)
369 KOG0992|consensus 35.3 8.3E+02 0.018 29.0 41.0 43 530-572 479-521 (613)
370 PF05266 DUF724: Protein of un 35.1 5E+02 0.011 26.4 16.2 22 436-457 158-179 (190)
371 KOG2264|consensus 35.0 2.9E+02 0.0063 33.1 10.5 20 386-405 98-117 (907)
372 PRK15178 Vi polysaccharide exp 35.0 7.5E+02 0.016 28.4 17.2 103 360-467 226-337 (434)
373 KOG0796|consensus 35.0 3.6E+02 0.0079 29.8 10.7 28 75-102 84-111 (319)
374 PRK13428 F0F1 ATP synthase sub 34.8 7.2E+02 0.016 28.2 13.9 37 66-102 38-74 (445)
375 PRK13182 racA polar chromosome 34.6 4.9E+02 0.011 26.1 11.8 58 388-448 85-143 (175)
376 PF05384 DegS: Sensor protein 34.5 4.8E+02 0.01 26.0 20.4 90 325-414 23-118 (159)
377 PRK12704 phosphodiesterase; Pr 34.3 8E+02 0.017 28.5 17.2 12 527-538 340-351 (520)
378 PF10241 KxDL: Uncharacterized 33.9 3.4E+02 0.0074 24.1 11.2 61 381-448 22-82 (88)
379 PRK02119 hypothetical protein; 33.4 2.2E+02 0.0049 24.7 7.3 14 440-453 12-25 (73)
380 PF05700 BCAS2: Breast carcino 33.2 3.8E+02 0.0083 27.4 10.2 74 345-418 138-220 (221)
381 TIGR02449 conserved hypothetic 33.0 3.3E+02 0.0071 23.6 8.2 54 333-386 4-58 (65)
382 COG4717 Uncharacterized conser 32.8 1.1E+03 0.024 29.7 32.3 117 78-197 624-751 (984)
383 PF14073 Cep57_CLD: Centrosome 32.7 5.6E+02 0.012 26.2 14.9 43 366-408 112-154 (178)
384 PF09177 Syntaxin-6_N: Syntaxi 32.7 3.6E+02 0.0077 24.0 11.5 63 382-449 33-96 (97)
385 PF00015 MCPsignal: Methyl-acc 32.5 4.5E+02 0.0097 25.1 15.5 20 177-196 35-54 (213)
386 PF07889 DUF1664: Protein of u 32.1 4.7E+02 0.01 25.2 12.3 15 362-376 41-55 (126)
387 TIGR01069 mutS2 MutS2 family p 32.1 1E+03 0.022 29.1 16.5 17 25-41 39-55 (771)
388 PF06008 Laminin_I: Laminin Do 31.8 6E+02 0.013 26.3 32.1 43 351-393 179-221 (264)
389 PF02183 HALZ: Homeobox associ 31.7 1.8E+02 0.0038 23.3 5.9 36 335-370 4-39 (45)
390 PHA03332 membrane glycoprotein 31.6 1.3E+03 0.027 30.0 15.7 15 175-189 814-828 (1328)
391 PF08826 DMPK_coil: DMPK coile 31.4 3.3E+02 0.0072 23.2 9.0 36 383-418 20-56 (61)
392 PF10267 Tmemb_cc2: Predicted 31.1 8.3E+02 0.018 27.7 18.5 70 385-464 248-318 (395)
393 TIGR00019 prfA peptide chain r 30.9 8E+02 0.017 27.5 13.4 61 88-152 40-101 (360)
394 PF03938 OmpH: Outer membrane 30.9 4.5E+02 0.0097 24.6 11.4 79 63-149 25-103 (158)
395 COG3074 Uncharacterized protei 30.8 3.9E+02 0.0085 23.9 10.4 39 370-408 14-52 (79)
396 PF05769 DUF837: Protein of un 30.7 5.7E+02 0.012 25.8 19.1 99 84-189 73-177 (181)
397 PRK15422 septal ring assembly 30.7 4.1E+02 0.0088 24.0 9.8 37 372-408 16-52 (79)
398 PF01540 Lipoprotein_7: Adhesi 30.6 7.6E+02 0.017 27.2 20.0 99 309-417 109-211 (353)
399 PRK00578 prfB peptide chain re 30.6 7E+02 0.015 28.0 12.3 57 88-148 56-114 (367)
400 PF00769 ERM: Ezrin/radixin/mo 30.5 6.5E+02 0.014 26.3 17.0 45 431-475 76-120 (246)
401 COG4467 Regulator of replicati 30.3 74 0.0016 30.2 4.1 56 307-366 4-61 (114)
402 PRK00591 prfA peptide chain re 30.3 7.2E+02 0.016 27.8 12.3 59 88-150 39-99 (359)
403 KOG3433|consensus 30.2 3.7E+02 0.008 27.9 9.2 46 106-151 96-141 (203)
404 PF08172 CASP_C: CASP C termin 29.8 2.3E+02 0.0051 29.8 8.1 46 432-477 81-126 (248)
405 PF05615 THOC7: Tho complex su 29.8 4.7E+02 0.01 24.5 11.4 41 65-105 72-112 (139)
406 PRK03830 small acid-soluble sp 29.5 3.7E+02 0.0081 23.9 7.9 55 353-408 12-66 (73)
407 PF01519 DUF16: Protein of unk 29.0 4E+02 0.0086 25.1 8.5 44 354-405 34-77 (102)
408 PRK06746 peptide chain release 29.0 3.8E+02 0.0083 29.6 9.8 55 89-147 19-75 (326)
409 PRK05589 peptide chain release 28.9 3.5E+02 0.0075 29.9 9.5 19 129-147 56-74 (325)
410 PF06705 SF-assemblin: SF-asse 28.8 6.6E+02 0.014 25.8 21.6 117 350-475 92-214 (247)
411 PF04871 Uso1_p115_C: Uso1 / p 28.3 5.4E+02 0.012 24.7 14.9 33 441-473 81-113 (136)
412 PF14197 Cep57_CLD_2: Centroso 28.2 3.9E+02 0.0085 23.1 8.5 42 111-152 25-66 (69)
413 PF14817 HAUS5: HAUS augmin-li 28.1 1.1E+03 0.024 28.3 14.6 82 389-470 80-164 (632)
414 PF08657 DASH_Spc34: DASH comp 28.0 1.7E+02 0.0037 31.1 6.8 38 378-415 177-215 (259)
415 PF13863 DUF4200: Domain of un 28.0 4.6E+02 0.0099 23.8 15.3 97 326-422 4-109 (126)
416 PF05565 Sipho_Gp157: Siphovir 27.0 6E+02 0.013 24.8 10.5 49 427-475 37-85 (162)
417 PF12795 MscS_porin: Mechanose 26.9 7E+02 0.015 25.5 20.5 48 428-475 162-209 (240)
418 PF04899 MbeD_MobD: MbeD/MobD 26.5 4.4E+02 0.0095 23.1 9.3 58 344-407 11-68 (70)
419 KOG4787|consensus 26.4 1.2E+03 0.027 28.2 17.9 149 329-477 332-527 (852)
420 KOG2077|consensus 26.3 2E+02 0.0043 34.3 7.4 83 1-104 355-441 (832)
421 KOG2150|consensus 26.2 1.2E+03 0.026 27.9 13.4 50 426-477 118-167 (575)
422 PF07798 DUF1640: Protein of u 26.2 6.4E+02 0.014 24.8 21.5 20 355-374 49-68 (177)
423 PF07889 DUF1664: Protein of u 26.1 6E+02 0.013 24.5 12.3 61 345-408 56-116 (126)
424 KOG0796|consensus 25.6 9.6E+02 0.021 26.7 12.8 11 352-362 99-109 (319)
425 PF14257 DUF4349: Domain of un 25.6 3.2E+02 0.0068 28.2 8.2 25 384-408 128-152 (262)
426 PF14712 Snapin_Pallidin: Snap 25.4 4.5E+02 0.0097 22.8 11.7 74 332-406 10-89 (92)
427 PF14817 HAUS5: HAUS augmin-li 25.0 1.3E+03 0.027 27.9 25.7 52 426-477 361-415 (632)
428 PRK15178 Vi polysaccharide exp 24.9 1.1E+03 0.024 27.1 15.7 50 355-404 284-337 (434)
429 KOG1853|consensus 24.5 9.5E+02 0.021 26.3 19.3 47 316-362 39-85 (333)
430 PF02388 FemAB: FemAB family; 24.2 3.5E+02 0.0077 29.9 8.7 9 308-316 225-233 (406)
431 smart00338 BRLZ basic region l 24.2 3.7E+02 0.008 22.1 6.8 22 386-407 38-59 (65)
432 PF14723 SSFA2_C: Sperm-specif 24.2 2.3E+02 0.0049 29.0 6.5 61 314-374 115-176 (179)
433 PF13935 Ead_Ea22: Ead/Ea22-li 24.2 5.7E+02 0.012 24.4 9.0 22 386-407 117-138 (139)
434 TIGR03495 phage_LysB phage lys 24.1 6.8E+02 0.015 24.4 9.7 67 327-393 24-94 (135)
435 PF02050 FliJ: Flagellar FliJ 24.1 4.5E+02 0.0099 22.4 15.5 81 344-424 6-89 (123)
436 smart00338 BRLZ basic region l 24.0 3.1E+02 0.0068 22.5 6.4 14 358-371 48-61 (65)
437 PF10805 DUF2730: Protein of u 23.9 5.7E+02 0.012 23.4 9.1 16 354-369 46-61 (106)
438 PLN02678 seryl-tRNA synthetase 23.8 4.5E+02 0.0098 30.1 9.6 18 581-598 301-318 (448)
439 COG0216 PrfA Protein chain rel 23.8 6.5E+02 0.014 28.3 10.4 47 360-407 56-102 (363)
440 PRK13922 rod shape-determining 23.8 5.6E+02 0.012 26.5 9.6 43 375-417 63-105 (276)
441 PF03961 DUF342: Protein of un 23.6 5.8E+02 0.013 28.6 10.3 28 381-408 375-402 (451)
442 KOG0976|consensus 23.6 1.6E+03 0.034 28.5 39.3 31 380-410 378-408 (1265)
443 PRK11578 macrolide transporter 23.4 9.4E+02 0.02 25.8 12.8 18 438-455 166-183 (370)
444 cd07664 BAR_SNX2 The Bin/Amphi 23.4 8.6E+02 0.019 25.4 22.5 90 426-517 136-233 (234)
445 PRK05431 seryl-tRNA synthetase 23.4 4.7E+02 0.01 29.4 9.5 18 580-597 293-310 (425)
446 PF14282 FlxA: FlxA-like prote 23.3 3.3E+02 0.0072 24.9 7.0 11 329-339 26-36 (106)
447 PF04102 SlyX: SlyX; InterPro 23.2 4.7E+02 0.01 22.2 7.6 36 433-468 14-49 (69)
448 PF04949 Transcrip_act: Transc 23.1 7.9E+02 0.017 24.8 12.4 83 386-472 43-126 (159)
449 KOG4438|consensus 23.1 1.2E+03 0.026 27.0 19.3 139 339-477 127-288 (446)
450 PF05615 THOC7: Tho complex su 23.0 4.1E+02 0.0089 24.9 7.7 34 342-375 73-106 (139)
451 PHA01750 hypothetical protein 23.0 3.9E+02 0.0085 23.6 6.8 33 342-374 41-73 (75)
452 PF09731 Mitofilin: Mitochondr 23.0 1.2E+03 0.026 26.8 21.2 36 118-153 356-391 (582)
453 TIGR02971 heterocyst_DevB ABC 22.1 9.1E+02 0.02 25.2 16.5 33 357-389 97-129 (327)
454 PF14282 FlxA: FlxA-like prote 22.0 4.9E+02 0.011 23.8 7.8 21 426-446 54-74 (106)
455 PRK00888 ftsB cell division pr 22.0 3.5E+02 0.0075 24.9 6.8 13 335-347 33-45 (105)
456 KOG3850|consensus 21.9 1.3E+03 0.027 26.7 13.3 86 62-147 262-367 (455)
457 PRK09343 prefoldin subunit bet 21.6 6.7E+02 0.015 23.5 14.8 39 333-371 11-49 (121)
458 KOG4603|consensus 21.6 7.8E+02 0.017 25.5 9.6 41 383-423 88-131 (201)
459 PRK00409 recombination and DNA 21.6 1.5E+03 0.033 27.6 17.5 18 23-40 37-54 (782)
460 smart00502 BBC B-Box C-termina 21.5 5.4E+02 0.012 22.3 18.4 62 336-399 7-68 (127)
461 PF07989 Microtub_assoc: Micro 21.3 5.6E+02 0.012 22.4 8.9 37 381-417 36-73 (75)
462 PF06295 DUF1043: Protein of u 21.2 4.5E+02 0.0098 24.8 7.6 20 328-347 31-50 (128)
463 PRK14127 cell division protein 21.1 4.5E+02 0.0097 24.8 7.4 35 334-368 35-69 (109)
464 PF08657 DASH_Spc34: DASH comp 21.0 5.4E+02 0.012 27.4 8.9 37 341-377 178-214 (259)
465 PRK13455 F0F1 ATP synthase sub 20.9 8E+02 0.017 24.1 12.4 39 65-103 63-101 (184)
466 PRK10803 tol-pal system protei 20.7 4.4E+02 0.0095 27.7 8.2 43 333-375 58-100 (263)
467 PF04859 DUF641: Plant protein 20.6 3.1E+02 0.0067 26.6 6.4 43 336-378 80-122 (131)
468 PF08647 BRE1: BRE1 E3 ubiquit 20.4 6.3E+02 0.014 22.7 12.0 48 426-473 48-95 (96)
469 PF14257 DUF4349: Domain of un 20.1 6.5E+02 0.014 25.9 9.2 52 355-414 137-189 (262)
470 PF09755 DUF2046: Uncharacteri 20.0 1.2E+03 0.026 25.8 22.3 134 339-475 30-173 (310)
No 1
>KOG0971|consensus
Probab=100.00 E-value=1.3e-100 Score=846.85 Aligned_cols=465 Identities=41% Similarity=0.608 Sum_probs=447.8
Q ss_pred ChhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHHHHHHHHHHHhhhhhhhhHHHHhhHHHHHHHHHhHHHHHHHHH
Q psy15551 1 MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIM 80 (640)
Q Consensus 1 ~~~e~~~l~~kl~~~~~k~~ek~~~~~~~~~ql~q~~~~k~k~~e~~~~~~~~~d~~k~~~l~~~~~~~~~~~~~k~~~~ 80 (640)
|++++.||.+||++++.||.| |+.|+++||+|+||++|+.|||.+||
T Consensus 229 Lr~QvrdLtEkLetlR~kR~E---------------------------------Dk~Kl~ElekmkiqleqlqEfkSkim 275 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAE---------------------------------DKAKLKELEKMKIQLEQLQEFKSKIM 275 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhh---------------------------------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q psy15551 81 ESQAGLKRELEKLKQEKQEAVEAKE----DTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADI 156 (640)
Q Consensus 81 ~~~~~~~~el~~~k~~~~e~~~~~e----~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~ 156 (640)
+.|+.||++|...|+++++|+++++ +++|+.+++||+||||||||||||+||.|++.+|+|++||++|+||||+|+
T Consensus 276 ~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEm 355 (1243)
T KOG0971|consen 276 EQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEM 355 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 789999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhhchhhhhhcccccchhhhhhhhhhhhcccccchhhhhhhhhhhh
Q psy15551 157 EKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIF 236 (640)
Q Consensus 157 e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvrlRd~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (640)
++ +||+++..|+|++||||+||.|||+|||||||++
T Consensus 356 ee---kG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDls----------------------------------------- 391 (1243)
T KOG0971|consen 356 EE---KGSDGQAASSYQFKQLEQQNARLKDALVRLRDLS----------------------------------------- 391 (1243)
T ss_pred Hh---cCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcc-----------------------------------------
Confidence 99 5688888999999999999999999999999998
Q ss_pred ccccccchhhchhhhhhhccccccchhhhhhhhhhhhccccccchhhhhhhhhhhhcccccchhhhhhhhhhhhcccccc
Q psy15551 237 NNNKFDSRLYDLSAHEIFNNKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNKNKF 316 (640)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (640)
T Consensus 392 -------------------------------------------------------------------------------- 391 (1243)
T KOG0971|consen 392 -------------------------------------------------------------------------------- 391 (1243)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Q psy15551 317 DSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDL 396 (640)
Q Consensus 317 ~~~l~d~~~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEK 396 (640)
|++|+.+++++|++|.+++|+.+|+...|+|+.++.++|+.|+||+||||||||||+||++||++|++|+++
T Consensus 392 --------A~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEek 463 (1243)
T KOG0971|consen 392 --------ASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEK 463 (1243)
T ss_pred --------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHH
Confidence 567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15551 397 VSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALE 476 (640)
Q Consensus 397 IeELEetIeDLEaLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeE 476 (640)
|..|+++|.|||++++++++|.|++.+++.+||+|||.....+.++.+++.+..+.+.|+.+||.|||++|++|+.+|++
T Consensus 464 VklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe 543 (1243)
T KOG0971|consen 464 VKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQE 543 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred h---------------ccChhhHHhh--HHhhhhhhhhc-------chHHHHHHHhHhHhhcCCCCCCCCCCchHHHHHH
Q psy15551 477 S---------------LADRELTIVK--FRELNSLDEKV-------STENIEKCVTYFNTFYPVLFPDTKFSHVGHLLMD 532 (640)
Q Consensus 477 L---------------~~~~~~~~~~--~sasKA~~k~I-------EaeqA~~hl~~l~~FLPdsF~~~GGD~DsVl~lL 532 (640)
+ +-+++.|++| |+++||++++| |+.+|++|++||++||||+|+.+|||||||+++|
T Consensus 544 ~~dq~~Sseees~q~~s~~~et~dyk~~fa~skayaraie~QlrqiEv~~a~rh~~~l~AFmPdsFlrrGGdhDsvLv~l 623 (1243)
T KOG0971|consen 544 LTDQQESSEEESQQPPSVDPETFDYKIKFAESKAYARAIEMQLRQIEVAQANRHMSLLTAFMPDSFLRRGGDHDSVLVLL 623 (1243)
T ss_pred HHhhhhhhHHHhcCCCCCchhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhhccCCCCcceeehhH
Confidence 5 1358889887 99999999876 8999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhchHHHHHHHHHhhcCCCccc-------------------------hh--hhhhh-------------
Q psy15551 533 YVKILSTASDCLQTDSKIIQALIQETMMPCECY-------------------------SL--FLHSY------------- 572 (640)
Q Consensus 533 lf~RLa~Acd~~~~Ka~Ll~~~I~e~~~~~~~~-------------------------~l--~~~~~------------- 572 (640)
+++||+ +|++|+.++++++||+++++ || .||+|
T Consensus 624 llpRl~-------~K~~lv~s~a~ekFp~v~~~~reavt~ghageqyaf~arllyll~slqaaL~q~e~al~~c~vdvl~ 696 (1243)
T KOG0971|consen 624 LLPRLI-------CKAELVRSQAQEKFPLVENCSREAVTRGHAGEQYAFAARLLYLLSSLQAALHQYEHALSQCSVDVLK 696 (1243)
T ss_pred hHHHHH-------HHHHHHHHHHHhhCCCccccchhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence 999999 99999999999999998776 11 56666
Q ss_pred ------------------------ccccccccchhhHHHHHHHHHHHhhhhcCCCCCCCcCCccccchhhHHhhhhHHHh
Q psy15551 573 ------------------------GNEIGREGSTENIEKCVTYFNTFYPVLFPGHPSFSSCGSLLMDYVKILSTACDCLQ 628 (640)
Q Consensus 573 ------------------------~~~l~~~~~~E~FEKI~~YFn~IFsvLFgGG~A~~~~~L~LtD~~dvL~SGIEIiA 628 (640)
+++||+|+++++|.+|+.||++||++|+||.. .+|..++.|.+.+|.+||++|.
T Consensus 697 ka~~~y~emsahEk~lD~~ieLLkk~qlDEntn~e~i~k~l~yfq~m~s~hl~~ql--lde~q~~~d~iasl~A~ld~~~ 774 (1243)
T KOG0971|consen 697 KAGSLYPEMSAHEKSLDFLIELLKKDQLDENTNVEPITKALKYFQHLYSIHLAEQL--LDETQQLADHIASLQAALDCMS 774 (1243)
T ss_pred HHhhccchhhHHHHHHHHHHHHHhhcccccccCcchHHHHHHHHHHHHHHhccccc--hhHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999766 7999999999999999999999
Q ss_pred cchHHHHHHHh
Q psy15551 629 TDSKIIQALIQ 639 (640)
Q Consensus 629 ~~~~~~~~~~~ 639 (640)
+|++++++|||
T Consensus 775 vnt~r~~~flQ 785 (1243)
T KOG0971|consen 775 VNTGRLRAFLQ 785 (1243)
T ss_pred hhHHHHHHHHH
Confidence 99999999998
No 2
>PF12455 Dynactin: Dynein associated protein ; InterPro: IPR022157 This domain family is found in eukaryotes, and is approximately 280 amino acids in length. The family is found in association with PF01302 from PFAM. There is a single completely conserved residue E that may be functionally important. Dynactin has been associated with Dynein, a kinesin protein which is involved in organelle transport, mitotic spindle assembly and chromosome segregation. Dynactin anchors Dynein to specific subcellular structures.
Probab=99.93 E-value=2.3e-25 Score=226.98 Aligned_cols=169 Identities=18% Similarity=0.309 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHHHhh-ccChhhHHhh----HHhhhhhhhhc-------chHHHHHHHhHhHhhcCCCCCCCCCCchHH
Q psy15551 461 VKFRELVIREKEAALES-LADRELTIVK----FRELNSLDEKV-------STENIEKCVTYFNTFYPVLFPDTKFSHVGH 528 (640)
Q Consensus 461 sKFRELV~~LQedLeEL-~~~~~~~~~~----~sasKA~~k~I-------EaeqA~~hl~~l~~FLPdsF~~~GGD~DsV 528 (640)
...|......+++..+. ..+++||+++ ++++|||+|+| |++||++|++||++|||++|++ ||+|||
T Consensus 3 ed~r~~~~~~e~e~~~~~s~~~~~~~ln~klq~s~sKa~~k~IDlELrklEa~qa~~hl~il~~fLPd~f~~--gD~D~i 80 (274)
T PF12455_consen 3 EDMRASQQSQEEESEDLSSQSRAMMDLNMKLQFSASKAQAKAIDLELRKLEAEQANQHLSILKAFLPDSFFR--GDHDSI 80 (274)
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhc--ccchhH
Confidence 34455555566666655 4788888664 89999999998 8999999999999999999998 999999
Q ss_pred HHHHHHHHhhhhhhhhhchHHHHHHHHHhhcCCCccc---------------------hh--------------------
Q psy15551 529 LLMDYVKILSTASDCLQTDSKIIQALIQETMMPCECY---------------------SL-------------------- 567 (640)
Q Consensus 529 l~lLlf~RLa~Acd~~~~Ka~Ll~~~I~e~~~~~~~~---------------------~l-------------------- 567 (640)
+++|+|+||+ +||+|++++|+++++..+.. +.
T Consensus 81 l~lLl~~Rl~-------~Ka~Ll~~~i~e~~~~~~~~~~~~~e~~~~~~~~~~~L~~l~~~~~rf~~~l~~Cs~E~f~k~ 153 (274)
T PF12455_consen 81 LALLLFKRLA-------FKAELLASQIREKGDREESLKGHVAEQLSFACRLIYKLSWLQALCHRFESALSRCSVEQFLKM 153 (274)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHhhcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 9999999999 99999999999994221111 00
Q ss_pred ------------hhhhh-----ccccccccchhhHHHHHHHHHHHhhhhcCCCCCCCcCCccccchhhHHhhhhHHHhcc
Q psy15551 568 ------------FLHSY-----GNEIGREGSTENIEKCVTYFNTFYPVLFPGHPSFSSCGSLLMDYVKILSTACDCLQTD 630 (640)
Q Consensus 568 ------------~~~~~-----~~~l~~~~~~E~FEKI~~YFn~IFsvLFgGG~A~~~~~L~LtD~~dvL~SGIEIiA~~ 630 (640)
.|++| +|+||++++++++++++.||+++|.+||+|.. .+|...+.+...++.+|+++++++
T Consensus 154 g~~~~Em~~~Er~lD~~IdlLk~d~LdE~~~~~~L~r~i~~~~~l~~~~~~~~~--~d~~~~~~~~~~~~~~~ld~~~~~ 231 (274)
T PF12455_consen 154 GGLYPEMEPVERALDSWIDLLKKDQLDENTCADELERSIAYFSHLAEVHLPEEL--EDCADELLDRASLLQSALDSMAAN 231 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHcCCcc--cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333 99999999999999999999999999999666 689999999999999999999999
Q ss_pred hHHHHHHHhC
Q psy15551 631 SKIIQALIQR 640 (640)
Q Consensus 631 ~~~~~~~~~~ 640 (640)
..++++++|.
T Consensus 232 ~~~l~~~lq~ 241 (274)
T PF12455_consen 232 LARLKTLLQS 241 (274)
T ss_pred HHHHHHHHhc
Confidence 9999999873
No 3
>KOG0971|consensus
Probab=99.53 E-value=3.7e-09 Score=121.17 Aligned_cols=118 Identities=32% Similarity=0.457 Sum_probs=99.4
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHhhhhHHHHHHHHHHHhhhhhhhhHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy15551 10 EKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRE 89 (640)
Q Consensus 10 ~kl~~~~~k~~ek~~~~~~~~~ql~q~~~~k~k~~e~~~~~~~~~d~~k~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~e 89 (640)
+-|+.-+...+.|++|+|+|+|||+|++|||+|||++|+. --|+|-+-+++..+..+++.+.+...++.+.-
T Consensus 241 etlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~--------Lqrel~raR~e~keaqe~ke~~k~emad~ad~ 312 (1243)
T KOG0971|consen 241 ETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQAD--------LQRELKRARKEAKEAQEAKERYKEEMADTADA 312 (1243)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466668888999999999999999999999999999999 78999999999999999999988888888766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 90 LEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEEL 145 (640)
Q Consensus 90 l~~~k~~~~e~~~~~e~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel 145 (640)
++-+--++ ++| +|..|-...|-||+.||.+.|.++|+.+|..+++-
T Consensus 313 iEmaTldK--------EmA--EERaesLQ~eve~lkEr~deletdlEILKaEmeek 358 (1243)
T KOG0971|consen 313 IEMATLDK--------EMA--EERAESLQQEVEALKERVDELETDLEILKAEMEEK 358 (1243)
T ss_pred HHHHHhhH--------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 64444333 222 45666667788999999999999999999999874
No 4
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.39 E-value=3.3e-09 Score=126.58 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=43.9
Q ss_pred cccchhhHHHHHHHHHHHhhhhcCCCCCCCcCCccccchhhHHhhhhHHHhcc
Q psy15551 578 REGSTENIEKCVTYFNTFYPVLFPGHPSFSSCGSLLMDYVKILSTACDCLQTD 630 (640)
Q Consensus 578 ~~~~~E~FEKI~~YFn~IFsvLFgGG~A~~~~~L~LtD~~dvL~SGIEIiA~~ 630 (640)
.+.-.++|..|+..|+.||+.+||||.| .|.|++|+++|++||+|.+.-
T Consensus 1008 ~~~f~~~f~~In~~F~~if~~L~~GG~a----~L~l~~~dd~l~~Giei~a~p 1056 (1163)
T COG1196 1008 RERFKETFDKINENFSEIFKELFGGGTA----ELELTEPDDPLTAGIEISARP 1056 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCee----EEEeCCCCchhhcCcEEEEEC
Confidence 3444678999999999999999999998 999999999999999998753
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.24 E-value=4.7e-06 Score=97.26 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=39.9
Q ss_pred cchhhHHHHHHHHHHHhhhhcCCCCCCCcCCccccchhhHHhhhhHHHhcc
Q psy15551 580 GSTENIEKCVTYFNTFYPVLFPGHPSFSSCGSLLMDYVKILSTACDCLQTD 630 (640)
Q Consensus 580 ~~~E~FEKI~~YFn~IFsvLFgGG~A~~~~~L~LtD~~dvL~SGIEIiA~~ 630 (640)
.-..+|..++.+|+.+|+.+| ||.| .+.+.+|++.+.+|+++.+..
T Consensus 1019 ~f~~~f~~~~~~f~~~~~~l~-~~~~----~l~~~~~~~~~~~~~~~~~~~ 1064 (1164)
T TIGR02169 1019 VFMEAFEAINENFNEIFAELS-GGTG----ELILENPDDPFAGGLELSAKP 1064 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCeE----EEEecCCCCcccCCeEEEEEc
Confidence 345679999999999999999 7877 899999888899999988764
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.17 E-value=1.5e-06 Score=100.75 Aligned_cols=46 Identities=17% Similarity=0.282 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHHHHhhhhcC----CCCCCCcCCccccchhhHHhhhhHHHhcch
Q psy15551 582 TENIEKCVTYFNTFYPVLFP----GHPSFSSCGSLLMDYVKILSTACDCLQTDS 631 (640)
Q Consensus 582 ~E~FEKI~~YFn~IFsvLFg----GG~A~~~~~L~LtD~~dvL~SGIEIiA~~~ 631 (640)
.++|..|+.+|+.+|+.+|+ ||.| .+.+.||++++..|+.+.+...
T Consensus 1031 ~~~F~~v~~~f~~~F~~lf~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 1080 (1179)
T TIGR02168 1031 RERFKDTFDQVNENFQRVFPKLFGGGEA----ELRLTDPEDLLEAGIEIFAQPP 1080 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeE----EEEeCCCCcccccCceEEEeCC
Confidence 46788898888888877775 7777 7778788888899988776653
No 7
>PRK02224 chromosome segregation protein; Provisional
Probab=98.99 E-value=0.00022 Score=82.73 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q psy15551 122 EMAEERAETLQVELDLAKEKIEELTLDIELMKAD 155 (640)
Q Consensus 122 emaee~~e~l~~el~~~k~k~eel~le~e~lk~e 155 (640)
+=++.+.+.++.+++.+++++.+++..+..++..
T Consensus 408 ~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~ 441 (880)
T PRK02224 408 GNAEDFLEELREERDELREREAELEATLRTARER 441 (880)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777777766655555443
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.93 E-value=0.00035 Score=81.42 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=9.7
Q ss_pred cccccccchhhHHHHHHHHHHH
Q psy15551 574 NEIGREGSTENIEKCVTYFNTF 595 (640)
Q Consensus 574 ~~l~~~~~~E~FEKI~~YFn~I 595 (640)
|+.+...+..+...+..++..+
T Consensus 1118 DE~~~~ld~~~~~~~~~~~~~~ 1139 (1179)
T TIGR02168 1118 DEVDAPLDDANVERFANLLKEF 1139 (1179)
T ss_pred cCccccccHHHHHHHHHHHHHh
Confidence 3333344444445554444443
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.86 E-value=0.00024 Score=83.31 Aligned_cols=18 Identities=17% Similarity=0.466 Sum_probs=13.0
Q ss_pred chHHHHHHHhHhH-------hhcCC
Q psy15551 499 STENIEKCVTYFN-------TFYPV 516 (640)
Q Consensus 499 EaeqA~~hl~~l~-------~FLPd 516 (640)
..+-|..++.|++ .|+|-
T Consensus 556 ~~~~a~~~i~~l~~~~~gr~tflpl 580 (1164)
T TIGR02169 556 DDAVAKEAIELLKRRKAGRATFLPL 580 (1164)
T ss_pred CHHHHHHHHHHHHhcCCCCeeeccH
Confidence 4566888888886 57774
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=98.73 E-value=0.00059 Score=79.29 Aligned_cols=79 Identities=19% Similarity=0.293 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q psy15551 336 KDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAAL----GAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-AL 410 (640)
Q Consensus 336 ~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~----gAEEMVEELTEKNleLEEKIeELEetIeDLE-aL 410 (640)
.++..+..+...+....+.+...+..++..+.++..+|..+. .++..++++..+...+.+++.+++..+..++ .+
T Consensus 363 ~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l 442 (880)
T PRK02224 363 EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERV 442 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444444444322 2234445555555555555555555555544 44
Q ss_pred HHHH
Q psy15551 411 QVVS 414 (640)
Q Consensus 411 kELn 414 (640)
..+.
T Consensus 443 ~~~~ 446 (880)
T PRK02224 443 EEAE 446 (880)
T ss_pred HHHH
Confidence 4443
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=98.73 E-value=0.0015 Score=75.65 Aligned_cols=53 Identities=19% Similarity=0.341 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 355 LKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDL 407 (640)
Q Consensus 355 l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDL 407 (640)
++.++..++..+.+|...+.....+...+..+..+..++..++.+++..+.+|
T Consensus 530 l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 582 (880)
T PRK03918 530 LKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEEL 582 (880)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333444444444444444333344444444444444444444444444433
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.66 E-value=0.0015 Score=79.91 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHH
Q psy15551 360 TELEADCADLHEQVDAALGAEEMVQ 384 (640)
Q Consensus 360 ~~~e~~~~~l~~q~d~a~gAEEMVE 384 (640)
..+...+..++..++..-++...|.
T Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~i~ 961 (1311)
T TIGR00606 937 KKAQDKVNDIKEKVKNIHGYMKDIE 961 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555554444444443
No 13
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.58 E-value=0.00096 Score=75.25 Aligned_cols=147 Identities=22% Similarity=0.225 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy15551 331 MSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQV-DAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE- 408 (640)
Q Consensus 331 ~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~-d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE- 408 (640)
++..+....-+..+++++....++....|..+--++++|+-|+ |+.+.+.+.-.+.......|...++..+..|.+|.
T Consensus 299 lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~ 378 (546)
T PF07888_consen 299 LQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSR 378 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4444566667777788888888888888888888899999888 55566666666777777777777777777788887
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 409 ALQVVSDQLQEDAKEIE---IELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALES 477 (640)
Q Consensus 409 aLkELnDELEEnhvE~E---KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL 477 (640)
.+..+.+-|.+-..+-. ++|..+-|....++.+..+.+..++..+.-.+..-.++++.-+.|-..+..+
T Consensus 379 el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~L 450 (546)
T PF07888_consen 379 ELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERL 450 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766555544 7888888888889999999999988877766666666666666666655544
No 14
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.54 E-value=0.0031 Score=77.28 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHHHHHHHHH
Q psy15551 6 QDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIME 45 (640)
Q Consensus 6 ~~l~~kl~~~~~k~~ek~~~~~~~~~ql~q~~~~k~k~~e 45 (640)
.+|..+++++-.+-.+.-+.+.+.+..++++...+..+..
T Consensus 698 ~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~ 737 (1311)
T TIGR00606 698 SDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQS 737 (1311)
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3445555554333444456667777777777766654443
No 15
>KOG4643|consensus
Probab=98.49 E-value=0.0024 Score=75.71 Aligned_cols=193 Identities=24% Similarity=0.330 Sum_probs=132.4
Q ss_pred ChhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhH-HHHHHHHHHHhh----hhhhhhHHHHhhHHHHHHHHHhHHHH
Q psy15551 1 MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSA-EFKAKIMESQAA----SSLFRYREKTRDLDEMKIQLDQSAEF 75 (640)
Q Consensus 1 ~~~e~~~l~~kl~~~~~k~~ek~~~~~~~~~ql~q~~-~~k~k~~e~~~~----~~~~~d~~k~~~l~~~~~~~~~~~~~ 75 (640)
|.-++-|+++|+++|++.-.||.--+..|+-.|+++. +|+..=+|++-- -+.-+||.++..+-.-..-.+ ..|
T Consensus 175 L~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d--~~y 252 (1195)
T KOG4643|consen 175 LEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPD--TTY 252 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCC--Ccc
Confidence 3567899999999999999999999999999999884 677766665532 223345555554444333333 568
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHhhhH
Q psy15551 76 KAKIMESQAGLKRELEKLKQEKQEAVEAKE----DTADLVETLEMMTLDKEMAE--ERAETLQVELDLAKEKIEELTLDI 149 (640)
Q Consensus 76 k~~~~~~~~~~~~el~~~k~~~~e~~~~~e----~~~d~~~~lem~tldkemae--e~~e~l~~el~~~k~k~eel~le~ 149 (640)
|.++|++- -++..+++||+..+-+.+.++ .+.-+...-|-+|+.+|+.. -+...++.+.+..+-++++|-.|.
T Consensus 253 kerlmDs~-fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEn 331 (1195)
T KOG4643|consen 253 KERLMDSD-FYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEEN 331 (1195)
T ss_pred chhhhhhH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 88888872 245556666776666665555 55556666666888888865 456788899999999999999888
Q ss_pred HHHHHhhhhhcCC--------CCCCCCcchHHHHHHHHHHHHHHHHHHHhhhchh
Q psy15551 150 ELMKADIEKSCDG--------AGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSA 196 (640)
Q Consensus 150 e~lk~e~e~~~~~--------~~~~~~~~~~~~~qle~qN~rLreaLvrlRd~s~ 196 (640)
-.|.-..+....+ .....+..+.+..+.+-.+.|+-..|+.=|.++.
T Consensus 332 stLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~ 386 (1195)
T KOG4643|consen 332 STLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTG 386 (1195)
T ss_pred HHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHH
Confidence 8876655443322 1123456677777666666777777776666653
No 16
>KOG0161|consensus
Probab=98.47 E-value=0.0034 Score=79.21 Aligned_cols=94 Identities=19% Similarity=0.311 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH--------HHHHHHHHH
Q psy15551 327 EKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQ--------KLELEDLVS 398 (640)
Q Consensus 327 ~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEK--------NleLEEKIe 398 (640)
....++.|+..+.++..+...-..+..|++.....+...+++|+++++...|.-.+..+++.+ +..|++...
T Consensus 1095 l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~ 1174 (1930)
T KOG0161|consen 1095 LQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETL 1174 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666777777777788888888999999999999999998887777665544 334555555
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHH
Q psy15551 399 KQAEEIVDLE-----ALQVVSDQLQED 420 (640)
Q Consensus 399 ELEetIeDLE-----aLkELnDELEEn 420 (640)
..+.++.++. .+.++.++++..
T Consensus 1175 ~~e~~~~~lr~~~~~~~~el~~qle~l 1201 (1930)
T KOG0161|consen 1175 DHEAQIEELRKKHADSLAELQEQLEQL 1201 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566665554 345555555443
No 17
>KOG0161|consensus
Probab=98.45 E-value=0.0051 Score=77.73 Aligned_cols=150 Identities=20% Similarity=0.263 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhh----hhHHHHHHHHHHHhhhhhhhhHHHHhhHHHHHHHHHhHHHHHHH
Q psy15551 3 AEIQDLKEKLDTMKIKYREKTRDLDEMKIQLD----QSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAK 78 (640)
Q Consensus 3 ~e~~~l~~kl~~~~~k~~ek~~~~~~~~~ql~----q~~~~k~k~~e~~~~~~~~~d~~k~~~l~~~~~~~~~~~~~k~~ 78 (640)
..+.|+...|+--+..|.+--|..+|+..+|. +..+++.++-+-+.+ .+-|--++-.+..+++......+.
T Consensus 1020 ~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~-----l~kke~El~~l~~k~e~e~~~~~~ 1094 (1930)
T KOG0161|consen 1020 QQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQ-----LKKKESELSQLQSKLEDEQAEVAQ 1094 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45677777777777778777777778777773 334455555565555 566667777788888777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q psy15551 79 IMESQAGLKRELEKLKQEKQEAVEAKE-----------DTADLVETLEMMTLDKEMA-EERAETLQVELDLAKEKIEELT 146 (640)
Q Consensus 79 ~~~~~~~~~~el~~~k~~~~e~~~~~e-----------~~~d~~~~lem~tldkema-ee~~e~l~~el~~~k~k~eel~ 146 (640)
++....+|++.+.++..++..-..... ++.++.+.|+-. ++.--| .+-.-....|+..++..+++-+
T Consensus 1095 l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~-~~~t~~q~e~~~k~e~e~~~l~~~leee~ 1173 (1930)
T KOG0161|consen 1095 LQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ-GGTTAAQLELNKKREAEVQKLRRDLEEET 1173 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777666666554332222 233333334333 111111 1222223345666666666666
Q ss_pred hhHHHHHHhhhh
Q psy15551 147 LDIELMKADIEK 158 (640)
Q Consensus 147 le~e~lk~e~e~ 158 (640)
++.+-..+++..
T Consensus 1174 ~~~e~~~~~lr~ 1185 (1930)
T KOG0161|consen 1174 LDHEAQIEELRK 1185 (1930)
T ss_pred HhHHHHHHHHHH
Confidence 666665555554
No 18
>PRK03918 chromosome segregation protein; Provisional
Probab=98.45 E-value=0.008 Score=69.79 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15551 86 LKRELEKLKQEKQEAVEAKE 105 (640)
Q Consensus 86 ~~~el~~~k~~~~e~~~~~e 105 (640)
++.++.+++.++.++.....
T Consensus 264 l~~el~~l~~~l~~l~~~~~ 283 (880)
T PRK03918 264 LEERIEELKKEIEELEEKVK 283 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.36 E-value=0.0084 Score=72.86 Aligned_cols=82 Identities=29% Similarity=0.441 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy15551 77 AKIMESQAGLKRELEKLKQEKQEAVEAKE---------------DTADLVETLEMMTLDKEMAEERAETLQVELDLAKEK 141 (640)
Q Consensus 77 ~~~~~~~~~~~~el~~~k~~~~e~~~~~e---------------~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k 141 (640)
.++.....++.+++..|+++...+....+ ++..+...++-.+=+-..+++..+.++..+.....+
T Consensus 189 ~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 268 (1163)
T COG1196 189 ERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKE 268 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555666666677777766666654433 222333334444444445555555556666666666
Q ss_pred HHHHhhhHHHHHHhhhh
Q psy15551 142 IEELTLDIELMKADIEK 158 (640)
Q Consensus 142 ~eel~le~e~lk~e~e~ 158 (640)
|+.+..+++-+++++..
T Consensus 269 i~~~~~~~~e~~~~~~~ 285 (1163)
T COG1196 269 IEELKSELEELREELEE 285 (1163)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666655555544
No 20
>KOG4643|consensus
Probab=98.08 E-value=0.052 Score=64.95 Aligned_cols=155 Identities=21% Similarity=0.269 Sum_probs=98.6
Q ss_pred HHHHHHhhhhhhhhHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q psy15551 42 KIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDK 121 (640)
Q Consensus 42 k~~e~~~~~~~~~d~~k~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e~~~d~~~~lem~tldk 121 (640)
+++-.++...--+|++++-|++.+|.+++.+.+--+-+.+.-..|+.+|+.++..-.- +.-.-++--+...+--|...+
T Consensus 239 dalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-~tleseiiqlkqkl~dm~~er 317 (1195)
T KOG4643|consen 239 DALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-ATLESEIIQLKQKLDDMRSER 317 (1195)
T ss_pred HHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHHHhh
Confidence 3444444444467999999999999999998887777888878888888888776533 111112222333333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH--hhhhhcCCC--CCCCCcchHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy15551 122 EMAEERAETLQVELDLAKEKIEELTLDIELMKA--DIEKSCDGA--GDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSAH 197 (640)
Q Consensus 122 emaee~~e~l~~el~~~k~k~eel~le~e~lk~--e~e~~~~~~--~~~~~~~~~~~~qle~qN~rLreaLvrlRd~s~~ 197 (640)
-|-.-+.+.|.+|.-.+.-.-+-|....++++. ++++.|..+ .-...-++....-++-+|.|+-.||--++--+-+
T Consensus 318 dtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~E 397 (1195)
T KOG4643|consen 318 DTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYE 397 (1195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHH
Confidence 455566667777777776666777777777765 333333331 1112234445566788999999999988876643
No 21
>KOG0996|consensus
Probab=98.01 E-value=0.022 Score=68.75 Aligned_cols=257 Identities=16% Similarity=0.156 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy15551 330 EMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE- 408 (640)
Q Consensus 330 ~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE- 408 (640)
++.++..++......+..-.....+....+.+++..|.++..- ++.|++....+.++..+++.++.+-+
T Consensus 915 ~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e----------~~~L~e~~~~~~~k~~E~~~~~~e~~~ 984 (1293)
T KOG0996|consen 915 QLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKE----------LDDLTEELKGLEEKAAELEKEYKEAEE 984 (1293)
T ss_pred HHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3444444444433333333334445556667777777666554 44577777777888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhH--Hh
Q psy15551 409 ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELT--IV 486 (640)
Q Consensus 409 aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL~~~~~~~--~~ 486 (640)
.+.++++++.....+++.--+.+.+.+...|. +..++++....+...+..|..+......+.--- +...+++. ++
T Consensus 985 ~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId-~~~K~e~~~~~l~e~~~~~~~~~k~~~~l~~~~--~tE~~~~~~~~~ 1061 (1293)
T KOG0996|consen 985 SLKEIKKELRDLKSELENIKKSENELKAERID-IENKLEAINGELNEIESKIKQPEKELKKLSLCN--MTETRPQIELDV 1061 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHhhhhhHHHhhCcccccc--chhhcccccccc
Confidence 88888888888777777555555555555666 777777888888888888887773332221100 00001110 00
Q ss_pred h---HHhhhhhhhhcc--hHHHHHHHhHhHhhcCCCCCCCCCCchHHH-----HHHHHHHhhhhhhhhhchHHHHHHHHH
Q psy15551 487 K---FRELNSLDEKVS--TENIEKCVTYFNTFYPVLFPDTKFSHVGHL-----LMDYVKILSTASDCLQTDSKIIQALIQ 556 (640)
Q Consensus 487 ~---~sasKA~~k~IE--aeqA~~hl~~l~~FLPdsF~~~GGD~DsVl-----~lLlf~RLa~Acd~~~~Ka~Ll~~~I~ 556 (640)
. -..+.-....|. ..-++..+.=++ . .|.++|- +-++..|+. -++..+.|-+ -.+
T Consensus 1062 ~~~Eeleae~~~~~i~e~i~~lE~~~~~l~--------~--vd~~~i~eY~~k~~~y~~rv~-~l~~~t~kr~----~~r 1126 (1293)
T KOG0996|consen 1062 ESPEELEAEMLEDNINEKIALLEKRVEELR--------E--VDLGVIAEYAKKVELYLKRVA-ELEKFTQKRD----EHR 1126 (1293)
T ss_pred CChHHHHhhhcHhhHHHHHHHHHHHHHHhc--------C--CChHHHHHHHHHHHHHHHHHH-HHHHHHHHHH----HHH
Confidence 0 000000000010 011111111111 2 2444443 334555655 1111111111 111
Q ss_pred hhcCCCccchhhhhhhccccccccchhhHHHHHHHHHHHhhhhcCCCCCCCcCCccccchhhHHhhhhHHHhc
Q psy15551 557 ETMMPCECYSLFLHSYGNEIGREGSTENIEKCVTYFNTFYPVLFPGHPSFSSCGSLLMDYVKILSTACDCLQT 629 (640)
Q Consensus 557 e~~~~~~~~~l~~~~~~~~l~~~~~~E~FEKI~~YFn~IFsvLFgGG~A~~~~~L~LtD~~dvL~SGIEIiA~ 629 (640)
+.+..- . .-+|||- ..+|.-|......||.++.-||.| .|.|.|..|+.+.||-..+-
T Consensus 1127 e~l~~L-------r--k~RldEF--m~gf~~Is~kLkemYQmIT~GGdA----eLElVDslDPFseGV~FSVr 1184 (1293)
T KOG0996|consen 1127 EKLEEL-------R--KRRLDEF--MAGFNIISMKLKEMYQMITLGGDA----ELELVDSLDPFSEGVMFSVR 1184 (1293)
T ss_pred HHHHHH-------H--HHHHHHH--HHHHHHHHHHHHHHHHHHhcCCcc----eeEeeccCCCcccCceEEee
Confidence 111110 0 2234443 468999999999999999999999 99999999999999866543
No 22
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.98 E-value=0.03 Score=57.74 Aligned_cols=90 Identities=21% Similarity=0.242 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHH
Q psy15551 106 DTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLR 185 (640)
Q Consensus 106 ~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLr 185 (640)
++.++...|.-++.++--++-....++.+++.++.++++..-....+..++...... -+..+..-..|+.+...|+
T Consensus 55 el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~----ld~~~~~r~~le~~i~~L~ 130 (312)
T PF00038_consen 55 ELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKD----LDEETLARVDLENQIQSLK 130 (312)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----hhhhhhhHhHHHHHHHHHH
Confidence 444555555555555555555666666666666666665555544444444443311 0124555677999999999
Q ss_pred HHHHHhhhchhhhh
Q psy15551 186 ETLVRLRDLSAHEI 199 (640)
Q Consensus 186 eaLvrlRd~s~~~~ 199 (640)
+-|-.++.+-.+++
T Consensus 131 eEl~fl~~~heeEi 144 (312)
T PF00038_consen 131 EELEFLKQNHEEEI 144 (312)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhh
Confidence 99999998876543
No 23
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.93 E-value=0.13 Score=63.27 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHhhhhcCCCCC
Q psy15551 582 TENIEKCVTYFNTFYPVLFPGHPS 605 (640)
Q Consensus 582 ~E~FEKI~~YFn~IFsvLFgGG~A 605 (640)
...+.+.+..|..+|+.+.|++.+
T Consensus 915 ~~~l~~~~~~f~~~l~~~~~~~~~ 938 (1201)
T PF12128_consen 915 REELKKAVERFKGVLTKHSGSELA 938 (1201)
T ss_pred HHHHHHHHHHHHHHHHhccccchH
Confidence 345777777888887777766553
No 24
>KOG0250|consensus
Probab=97.83 E-value=0.14 Score=61.99 Aligned_cols=134 Identities=25% Similarity=0.311 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q psy15551 332 SKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-AL 410 (640)
Q Consensus 332 ~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aL 410 (640)
..+..+..+.+.+..+...+..+++..+..++.+|+++++|++ ..++.+..+.+.+++.|+.+|+.++ .+
T Consensus 347 ~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~---------~~~~~~~~e~e~k~~~L~~evek~e~~~ 417 (1074)
T KOG0250|consen 347 DDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTN---------NELGSELEERENKLEQLKKEVEKLEEQI 417 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555666667777888889999999999999984 4556666677777777777777777 66
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q psy15551 411 QVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELT----IVKFRELVIREKEAAL 475 (640)
Q Consensus 411 kELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~T----IsKFRELV~~LQedLe 475 (640)
..+.+++++.+... ...+++.......|..+.+.|......|.++..+ ++.|-..+..+=..|.
T Consensus 418 ~~L~~e~~~~~~~~-~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG~~m~~lL~~I~ 485 (1074)
T KOG0250|consen 418 NSLREELNEVKEKA-KEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFGPNMPQLLRAIE 485 (1074)
T ss_pred HHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcchhhHHHHHHHH
Confidence 67777777665544 5567788888888899999999988888887654 5566666666555554
No 25
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.83 E-value=0.21 Score=62.79 Aligned_cols=60 Identities=22% Similarity=0.305 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhh-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q psy15551 363 EADCADLHEQVDAAL-GAEEMVQQLSVQKLELEDLVSKQAEEIVDLE----ALQVVSDQLQEDAK 422 (640)
Q Consensus 363 e~~~~~l~~q~d~a~-gAEEMVEELTEKNleLEEKIeELEetIeDLE----aLkELnDELEEnhv 422 (640)
+..+..|.++.++.+ ++++.++++.++...+..+.++|...|..++ +-...++.|....-
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~L~e 617 (1486)
T PRK04863 553 EDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLRE 617 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHHHHHHHH
Confidence 445555566666555 6666777777777888888888888888777 33444455544433
No 26
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.83 E-value=0.14 Score=60.59 Aligned_cols=28 Identities=11% Similarity=0.098 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 450 LESLADRELTIVKFRELVIREKEAALES 477 (640)
Q Consensus 450 eEqLEDlE~TIsKFRELV~~LQedLeEL 477 (640)
.+.++.+...+..++..+..++.+|.+.
T Consensus 464 ~Eele~~~~e~~~lk~~~~~LQ~eLsEk 491 (775)
T PF10174_consen 464 QEELETYQKELKELKAKLESLQKELSEK 491 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 4566667777777777777777776643
No 27
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.83 E-value=0.13 Score=60.28 Aligned_cols=114 Identities=22% Similarity=0.376 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q psy15551 37 AEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE----DTADLVE 112 (640)
Q Consensus 37 ~~~k~k~~e~~~~~~~~~d~~k~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e----~~~d~~~ 112 (640)
+.+..+|.+-+.. -+..-.++...+.+.+.+...-..+.+....+..+...+|.+++|+..+.- ++++|++
T Consensus 30 ~~~~~~i~~l~~e-----lk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEe 104 (717)
T PF09730_consen 30 AYLQQRILELENE-----LKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEE 104 (717)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3466677777777 555667888999999998888888888888899999999999999876655 6666654
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhh
Q psy15551 113 TLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKS 159 (640)
Q Consensus 113 ~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~ 159 (640)
|-.+|-|-+.- .-.-|+|.+.+|-.|.-|+-|+++|+..+++.
T Consensus 105 --ENislQKqvs~--Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 105 --ENISLQKQVSV--LKQSQVEFEGLKHEIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred --HHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666653 34568999999999999999999999887773
No 28
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.60 E-value=0.45 Score=60.00 Aligned_cols=98 Identities=11% Similarity=0.115 Sum_probs=52.1
Q ss_pred hHHHHHHHhHhHhhcCCCCCCCCCCchHHHH----HHHHHHhhhhhhhhhchHHHHHHHHHhhcCCCccchhhhhh----
Q psy15551 500 TENIEKCVTYFNTFYPVLFPDTKFSHVGHLL----MDYVKILSTASDCLQTDSKIIQALIQETMMPCECYSLFLHS---- 571 (640)
Q Consensus 500 aeqA~~hl~~l~~FLPdsF~~~GGD~DsVl~----lLlf~RLa~Acd~~~~Ka~Ll~~~I~e~~~~~~~~~l~~~~---- 571 (640)
--+|...+..|..+-|+.|.++ ..|..+ +...+-+...-+..+.+-..+...+.....+..|....|..
T Consensus 605 W~~a~~al~~L~eq~g~~~~~~---~~v~~~mq~~~~~~~~~~~~~~~~~~~~~~L~~~i~~l~~~~~g~~~~l~~~~~~ 681 (1486)
T PRK04863 605 WLAAQDALARLREQSGEEFEDS---QDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQPGGSEDPRLNALAER 681 (1486)
T ss_pred HHhhHHHHHHHHHhcchhhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccHHHHHHHHh
Confidence 5667777888999999888753 222222 11111122233444466667778887777666665443333
Q ss_pred hccccccccchhhHHHHHHHHHHHhhhhcCCCC
Q psy15551 572 YGNEIGREGSTENIEKCVTYFNTFYPVLFPGHP 604 (640)
Q Consensus 572 ~~~~l~~~~~~E~FEKI~~YFn~IFsvLFgGG~ 604 (640)
+++-+ -.+-|.-|-.-+...++..+||..
T Consensus 682 ~~Gvl----vsel~~~v~~~~~~~~~A~lg~~~ 710 (1486)
T PRK04863 682 FGGVL----LSEIYDDVSLEDAPYFSALYGPAR 710 (1486)
T ss_pred cCCee----hhHhhhccCcchHHHHHHHHHhhh
Confidence 34433 344455333333344555555443
No 29
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.56 E-value=0.24 Score=55.90 Aligned_cols=49 Identities=29% Similarity=0.299 Sum_probs=30.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhh
Q psy15551 110 LVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEK 158 (640)
Q Consensus 110 ~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~ 158 (640)
+...+.++.=-|--|.-+++....-......++++|+.+|.-+|+.++.
T Consensus 142 lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~ 190 (522)
T PF05701_consen 142 LRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLES 190 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334434456666666666666777777777777777777666654
No 30
>KOG0933|consensus
Probab=97.51 E-value=0.44 Score=57.54 Aligned_cols=66 Identities=27% Similarity=0.360 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhHH
Q psy15551 85 GLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAET-----LQVELDLAKEKIEELTLDIE 150 (640)
Q Consensus 85 ~~~~el~~~k~~~~e~~~~~e~~~d~~~~lem~tldkemaee~~e~-----l~~el~~~k~k~eel~le~e 150 (640)
..|++|..+.++++..........++...|++.+=+--|++.|+++ +..+++.+++.+++++.+|.
T Consensus 688 ~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ik 758 (1174)
T KOG0933|consen 688 AIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIK 758 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888999998888889999999999999888888888874 44555555555555554443
No 31
>PRK01156 chromosome segregation protein; Provisional
Probab=97.50 E-value=0.38 Score=56.79 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhh
Q psy15551 121 KEMAEERAETLQVELDLAKEKIEELTLDIELMKADIE 157 (640)
Q Consensus 121 kemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e 157 (640)
.|.-.+-......++..+..++++|.-+++.++.++.
T Consensus 464 ~e~~~e~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~ 500 (895)
T PRK01156 464 EEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIV 500 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333445555555555555555555555554443
No 32
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.42 E-value=0.2 Score=51.72 Aligned_cols=143 Identities=30% Similarity=0.460 Sum_probs=89.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhh-hhHHHHHHHHHHHhhhhhhhhHH-HHhhHHHHHHHHHhHHHHHHHH
Q psy15551 2 KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLD-QSAEFKAKIMESQAASSLFRYRE-KTRDLDEMKIQLDQSAEFKAKI 79 (640)
Q Consensus 2 ~~e~~~l~~kl~~~~~k~~ek~~~~~~~~~ql~-q~~~~k~k~~e~~~~~~~~~d~~-k~~~l~~~~~~~~~~~~~k~~~ 79 (640)
|.+++.|..+|-. |-+|.+.|+.-.-.|. ++..|+.+--..-+ +++. =-.++..++.+++....=++++
T Consensus 3 K~eL~~LNdRla~----YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~-----~~~~~ye~el~~lr~~id~~~~eka~l 73 (312)
T PF00038_consen 3 KEELQSLNDRLAS----YIEKVRFLEQENKRLESEIEELREKKGEEVS-----RIKEMYEEELRELRRQIDDLSKEKARL 73 (312)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH---------H-----HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHHHHhcccccCc-----ccccchhhHHHHhHHhhhhHHHHhhHH
Confidence 3466677766643 4455555544333332 23333333111100 0111 2346677778888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q psy15551 80 MESQAGLKRELEKLKQEKQEAVEAKE----DTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKAD 155 (640)
Q Consensus 80 ~~~~~~~~~el~~~k~~~~e~~~~~e----~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e 155 (640)
.-....++.++..++....+...... ++..+...++-.|+-+--.+.++++|+.|++-++.-.++ ++..|+..
T Consensus 74 ~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~hee---Ei~~L~~~ 150 (312)
T PF00038_consen 74 ELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEE---EIEELREQ 150 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTTSTT
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhh---hhhhhhhc
Confidence 99999999999999988887765444 667778888888888888888888888888887765543 44444443
Q ss_pred h
Q psy15551 156 I 156 (640)
Q Consensus 156 ~ 156 (640)
+
T Consensus 151 ~ 151 (312)
T PF00038_consen 151 I 151 (312)
T ss_dssp -
T ss_pred c
Confidence 3
No 33
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.42 E-value=0.36 Score=54.53 Aligned_cols=128 Identities=27% Similarity=0.341 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHH---
Q psy15551 325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQA--- 401 (640)
Q Consensus 325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELE--- 401 (640)
...+.++......|+..+.+...|....+.|+.+|......+..+++....+-.. |..|..+......++....
T Consensus 284 ~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~---v~~L~~eL~~~r~eLea~~~~e 360 (522)
T PF05701_consen 284 ASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSE---VSSLEAELNKTRSELEAAKAEE 360 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HhhHHHHHHHHHHHHHHHHhhh
Confidence 4455667777777777778888888888888888888888888888877654332 4555555555555544333
Q ss_pred ----HHHHHHH-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 402 ----EEIVDLE-ALQVVSDQLQEDAKEIE------IELKEEVEMARSATREVIREKEAALESLAD 455 (640)
Q Consensus 402 ----etIeDLE-aLkELnDELEEnhvE~E------KeLREELD~kdsqIrEL~rRIeq~eEqLED 455 (640)
..+.++. .|++++.+.++...+.+ ..++.+++.....+.+...++......++.
T Consensus 361 ~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~ea 425 (522)
T PF05701_consen 361 EKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEA 425 (522)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 45555555544433322 334444444444444444444444444433
No 34
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.34 E-value=0.23 Score=50.49 Aligned_cols=136 Identities=17% Similarity=0.219 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 331 MSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEAL 410 (640)
Q Consensus 331 ~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLEaL 410 (640)
|..+...+.+.+....+....++....+|..++..++...+.++ .+..+...|++.+..+...+..++.-
T Consensus 94 i~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e----------~~E~ki~eLE~el~~~~~~lk~lE~~ 163 (237)
T PF00261_consen 94 IEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAE----------AAESKIKELEEELKSVGNNLKSLEAS 163 (237)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhchhHHHHHHHHHHHHHHHHHhhhh
Confidence 34444445555555555555555555566666555554444433 33444444444444444444444422
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15551 411 QVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALE 476 (640)
Q Consensus 411 kELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeE 476 (640)
.+-..+-+...-.....|...+...........+++..+...+.+++..|..++.....++..|..
T Consensus 164 ~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 164 EEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222333667777777777778888888888888888888888888888888888764
No 35
>KOG4674|consensus
Probab=97.33 E-value=0.99 Score=57.64 Aligned_cols=120 Identities=20% Similarity=0.227 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 331 MSKLQKDIEEKKQENAELIKSQEKLKQRVTELEAD--CADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 331 ~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~--~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
+..+++.+..+...+.+|.+.....+.+...+... +.|..--+|..--..+.++.|..+.-.-...|.++++.+.-.+
T Consensus 860 l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~e 939 (1822)
T KOG4674|consen 860 LDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLE 939 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444422 4444444444223335555556666666677778888888888
Q ss_pred -HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 409 -ALQVVSDQLQEDAKEIE---IELKEEVEMARSATREVIREKEAAL 450 (640)
Q Consensus 409 -aLkELnDELEEnhvE~E---KeLREELD~kdsqIrEL~rRIeq~e 450 (640)
+|..++..+.+.+.+++ +.+..++-.++..+.++..++....
T Consensus 940 qsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~ 985 (1822)
T KOG4674|consen 940 QSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLR 985 (1822)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887777 3344444444555555555555444
No 36
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.31 E-value=0.36 Score=53.48 Aligned_cols=98 Identities=13% Similarity=0.131 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 380 EEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIE---IELKEEVEMARSATREVIREKEAALESLADR 456 (640)
Q Consensus 380 EEMVEELTEKNleLEEKIeELEetIeDLEaLkELnDELEEnhvE~E---KeLREELD~kdsqIrEL~rRIeq~eEqLEDl 456 (640)
...+..|+++...++.++..+...+.+++....--.++...-.+.. ...+..+.........++.+|..+.....+.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~ 377 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDN 377 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Confidence 6667777777777777777777777766632221222211111111 2333334334444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy15551 457 ELTIVKFRELVIREKEAALES 477 (640)
Q Consensus 457 E~TIsKFRELV~~LQedLeEL 477 (640)
+..+.+..+.+..+..++.++
T Consensus 378 ~~~l~~l~~~l~~~~~~~~~~ 398 (562)
T PHA02562 378 AEELAKLQDELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 37
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.31 E-value=5.3e-05 Score=87.05 Aligned_cols=37 Identities=35% Similarity=0.576 Sum_probs=0.0
Q ss_pred hhHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15551 54 RYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKREL 90 (640)
Q Consensus 54 ~d~~k~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~el 90 (640)
+||.|+.++.-++.++..+.+--.-+++....|..++
T Consensus 319 ~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel 355 (713)
T PF05622_consen 319 KYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEEL 355 (713)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444444444444444443333
No 38
>KOG4674|consensus
Probab=97.27 E-value=1.2 Score=57.09 Aligned_cols=130 Identities=21% Similarity=0.261 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy15551 344 ENAELIKSQEKLKQRVTELEADCADLHEQVDAALGA-EEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDA 421 (640)
Q Consensus 344 ~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gA-EEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnh 421 (640)
..++++..+-+|+..+..+-..+..|+.-.+.+-++ .+......++...|+.++..++..|.+|+ +-+-+.+++++.+
T Consensus 1054 ~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s 1133 (1822)
T KOG4674|consen 1054 QHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELS 1133 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666667777777777776666655443 35556677777777777777777777777 6666666666655
Q ss_pred HH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 422 KE------------------IEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEA 473 (640)
Q Consensus 422 vE------------------~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQed 473 (640)
.. .-.-||.|.+-.+..+..+.+....+..++.-++.+|...+..+...+..
T Consensus 1134 ~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~ 1203 (1822)
T KOG4674|consen 1134 QQSAVSNLSAMLLGLSDLQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERAS 1203 (1822)
T ss_pred hhhhhccccccccchHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44 11567777777777777766666666666666666666555555544443
No 39
>KOG0996|consensus
Probab=97.26 E-value=0.91 Score=55.71 Aligned_cols=16 Identities=13% Similarity=0.536 Sum_probs=13.4
Q ss_pred chHHHHHHHhHhHhhc
Q psy15551 499 STENIEKCVTYFNTFY 514 (640)
Q Consensus 499 EaeqA~~hl~~l~~FL 514 (640)
..+-|+.|+.+++.+=
T Consensus 650 t~e~aq~cI~fl~~~n 665 (1293)
T KOG0996|consen 650 TIETAQECINFLKKNN 665 (1293)
T ss_pred cHHHHHHHHHHHHHcC
Confidence 6788999999998763
No 40
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.14 E-value=0.74 Score=52.44 Aligned_cols=97 Identities=27% Similarity=0.304 Sum_probs=44.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy15551 62 LDEMKIQLDQSAEFKAKIMESQAGLK----RELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDL 137 (640)
Q Consensus 62 l~~~~~~~~~~~~~k~~~~~~~~~~~----~el~~~k~~~~e~~~~~e~~~d~~~~lem~tldkemaee~~e~l~~el~~ 137 (640)
|.+++.+++++...=..|=.....++ .+|.+++.=.++..+..-....+.=.-++.+|.+.+.+-....-..+|+.
T Consensus 200 l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~ 279 (569)
T PRK04778 200 LDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDE 279 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 45555555554444444444444443 44455555554444332222222122223333333433333344445666
Q ss_pred HHHHHHHHhhhHHHHHHhhhh
Q psy15551 138 AKEKIEELTLDIELMKADIEK 158 (640)
Q Consensus 138 ~k~k~eel~le~e~lk~e~e~ 158 (640)
+.+++..+...|+.|-.-++.
T Consensus 280 ~~~~~~~i~~~Id~Lyd~lek 300 (569)
T PRK04778 280 AEEKNEEIQERIDQLYDILER 300 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665554444
No 41
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.01 E-value=1 Score=51.73 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=18.9
Q ss_pred HHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 58 KTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEA 100 (640)
Q Consensus 58 k~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~ 100 (640)
.....+.++.+.+.+..=.+.....+..|..++..+.+...+.
T Consensus 197 l~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~ 239 (546)
T PF07888_consen 197 LTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQ 239 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555443333333344444444444444444333
No 42
>KOG0976|consensus
Probab=96.99 E-value=1.3 Score=52.69 Aligned_cols=204 Identities=13% Similarity=0.120 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH-HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q psy15551 346 AELIKSQEKLKQRVTELEADCADLHEQVDAALGA-EEMVQQLSVQKLELEDLVSKQAEEIV----DLEALQVVSDQLQED 420 (640)
Q Consensus 346 ~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gA-EEMVEELTEKNleLEEKIeELEetIe----DLEaLkELnDELEEn 420 (640)
+-|.+....-...+..+.....+|++-+-.|+|- ++--.-|-..|+.+..++..+.-.+- ..|.+.+.-.+|+..
T Consensus 280 s~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKk 359 (1265)
T KOG0976|consen 280 SVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKK 359 (1265)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 3333333333344445555556666666666663 23333344445555555544433332 334566666777777
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhccChhhHHhh
Q psy15551 421 AKEIE---IELKEEVEMARSATREVIREKEAALESLADRELTIVKFREL----------VIREKEAALESLADRELTIVK 487 (640)
Q Consensus 421 hvE~E---KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFREL----------V~~LQedLeEL~~~~~~~~~~ 487 (640)
|...+ ..+++-+..-+..++.+....+..+++|..+...|-.|... ++...+.+.-+-..+.|.+.+
T Consensus 360 rd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q 439 (1265)
T KOG0976|consen 360 RDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQ 439 (1265)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 76666 44555555555555555555566666666666666555554 223333333333444555555
Q ss_pred ---HHhhhhhhhhc---chHHHHHHHhHhHhhc--CCCCCCCCCCchHHHHHHHHHHhhhhhhhhhchHHHHHHHHHhh
Q psy15551 488 ---FRELNSLDEKV---STENIEKCVTYFNTFY--PVLFPDTKFSHVGHLLMDYVKILSTASDCLQTDSKIIQALIQET 558 (640)
Q Consensus 488 ---~sasKA~~k~I---EaeqA~~hl~~l~~FL--PdsF~~~GGD~DsVl~lLlf~RLa~Acd~~~~Ka~Ll~~~I~e~ 558 (640)
|-..|.+++-- -.+|-...+.++++.+ |+.=.++ +..--.+-+-..|=+ .|+..+..-|.++
T Consensus 440 ~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrKV--eqe~emlKaen~rqa-------kkiefmkEeiQet 509 (1265)
T KOG0976|consen 440 LSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRKV--EQEYEMLKAENERQA-------KKIEFMKEEIQET 509 (1265)
T ss_pred HhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcch--HHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 33333333311 3567777778888776 3443332 222233334455666 4555554444444
No 43
>KOG0977|consensus
Probab=96.98 E-value=0.75 Score=52.74 Aligned_cols=26 Identities=42% Similarity=0.587 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhh
Q psy15551 174 IKQLEQQNMRLRETLVRLRDLSAHEI 199 (640)
Q Consensus 174 ~~qle~qN~rLreaLvrlRd~s~~~~ 199 (640)
.+-|-.+|.||+..|-++|..-..++
T Consensus 171 ~~~Lk~en~rl~~~l~~~r~~ld~Et 196 (546)
T KOG0977|consen 171 LKRLKAENSRLREELARARKQLDDET 196 (546)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 46677888999999999998665543
No 44
>KOG0933|consensus
Probab=96.96 E-value=1.6 Score=53.11 Aligned_cols=95 Identities=20% Similarity=0.280 Sum_probs=58.5
Q ss_pred HHHHHhhhhhhhhhHHHHHhhhhHHHHHHHHHHHhhhhhhhhHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 14 TMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKL 93 (640)
Q Consensus 14 ~~~~k~~ek~~~~~~~~~ql~q~~~~k~k~~e~~~~~~~~~d~~k~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~el~~~ 93 (640)
..+.+.+...++|+.+..+|.-+..-..|--.-+++ .--++++|.-.+..+++...+ ++.+-...+..++.+.
T Consensus 681 ~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~q-----l~l~~~~l~l~~~r~~~~e~~--~~~~~~~~~~e~v~e~ 753 (1174)
T KOG0933|consen 681 QAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQ-----LELKLHELALLEKRLEQNEFH--KLLDDLKELLEEVEES 753 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcChHh--hHHHHHHHHHHHHHHH
Confidence 344445555566888888887766655555555555 556778887777777775443 2344445566677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15551 94 KQEKQEAVEAKEDTADLVETLE 115 (640)
Q Consensus 94 k~~~~e~~~~~e~~~d~~~~le 115 (640)
++++++.+...-+..+-..++|
T Consensus 754 ~~~Ike~~~~~k~~~~~i~~lE 775 (1174)
T KOG0933|consen 754 EQQIKEKERALKKCEDKISTLE 775 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666655555555555554
No 45
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.91 E-value=1.5 Score=51.94 Aligned_cols=127 Identities=21% Similarity=0.212 Sum_probs=74.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy15551 70 DQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDI 149 (640)
Q Consensus 70 ~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~ 149 (640)
..++.-.+.++....+|+.+|..+|.++.-.....+.+.-.... +-=+.|+.|-..-.|..|+..+|.+=.-|=-|+
T Consensus 23 ~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~---~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dy 99 (717)
T PF09730_consen 23 QESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQE---LRKECEDLELERKRLREEIKEYKFREARLLQDY 99 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34455566777777778888888888887777766644322211 122355566666667777777777666555555
Q ss_pred HHHHHhhhhhcC------CCCCCCCcchHHHHHHHHHHHHHH---HHHHHhhhchhhhh
Q psy15551 150 ELMKADIEKSCD------GAGDGTEVSHYQIKQLEQQNMRLR---ETLVRLRDLSAHEI 199 (640)
Q Consensus 150 e~lk~e~e~~~~------~~~~~~~~~~~~~~qle~qN~rLr---eaLvrlRd~s~~~~ 199 (640)
--|.+|+=.... ++-..-+.--..++.|+..+.-|+ |-++|||+++.+..
T Consensus 100 selEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~ql 158 (717)
T PF09730_consen 100 SELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQL 158 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555322111 001112234455666666665554 34578999987653
No 46
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.89 E-value=0.00024 Score=83.75 Aligned_cols=147 Identities=23% Similarity=0.389 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHH-------HHhhhhhhhhhHHHHHhhhhHHHHHHHHHHHhhhhhhhhHHHHhhHHHHHHHHH----
Q psy15551 2 KAEIQDLKEKLDTMK-------IKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLD---- 70 (640)
Q Consensus 2 ~~e~~~l~~kl~~~~-------~k~~ek~~~~~~~~~ql~q~~~~k~k~~e~~~~~~~~~d~~k~~~l~~~~~~~~---- 70 (640)
.+.|.+|.+.|+.=+ ..|++=.++|+.|+-+|+....-.+.-+|.... +=.+|.+++.+++
T Consensus 45 q~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kk--------rE~El~~Lrr~LEe~~~ 116 (859)
T PF01576_consen 45 QARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKK--------REAELAKLRRDLEEANL 116 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 345666666665433 344555678999999999888887766655444 2245555555543
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 71 ----QSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE----DTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKI 142 (640)
Q Consensus 71 ----~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e----~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~ 142 (640)
.+.+.|.|-....+.|..++..+++.+..+...+. ++.++...|+..+--|=-+|.....+...|..++.++
T Consensus 117 ~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~kl 196 (859)
T PF01576_consen 117 QHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKL 196 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence 35677888888889999999999888877765554 7789999999999989889999999999999999999
Q ss_pred HHHhhhHHHHHHhh
Q psy15551 143 EELTLDIELMKADI 156 (640)
Q Consensus 143 eel~le~e~lk~e~ 156 (640)
++.+-.+.-+....
T Consensus 197 ee~er~~~el~~~k 210 (859)
T PF01576_consen 197 EESERQRNELTEQK 210 (859)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 88877666655433
No 47
>PRK09039 hypothetical protein; Validated
Probab=96.84 E-value=0.16 Score=54.59 Aligned_cols=139 Identities=16% Similarity=0.115 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 328 KHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDL 407 (640)
Q Consensus 328 k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDL 407 (640)
.++++.+.+++..+..++++|-....-=..+...++..+..++.+++++......++..-. ...+...+++.....+
T Consensus 45 s~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~---~~~~~~~~~~~~~~~l 121 (343)
T PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA---ELAGAGAAAEGRAGEL 121 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhcchHHHHHHHH
Confidence 4567777788888887887777666666677788888888888888866655544443222 2222233455555555
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 408 E-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALES 477 (640)
Q Consensus 408 E-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL 477 (640)
. +|.+....+.+.|.++ ..+..+|..+..++...+..|...+......+..+..++..|+..
T Consensus 122 ~~~L~~~k~~~se~~~~V--------~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 122 AQELDSEKQVSARALAQV--------ELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 5555555555444443 334444444444444555555555555555555555555555544
No 48
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.83 E-value=1.8 Score=51.71 Aligned_cols=75 Identities=20% Similarity=0.364 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHHHHHHHHHHHhhhhhhhhHHHHhhHHHHHHHHHhHHHHHHH
Q psy15551 3 AEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAK 78 (640)
Q Consensus 3 ~e~~~l~~kl~~~~~k~~ek~~~~~~~~~ql~q~~~~k~k~~e~~~~~~~~~d~~k~~~l~~~~~~~~~~~~~k~~ 78 (640)
.|+..+.++|+|+...-.+=-.|++.++++|--...=++.. -+-...--||.-+|-..+++-..++..+.+-++.
T Consensus 301 ~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~L-qsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~ 375 (775)
T PF10174_consen 301 SELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEML-QSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSR 375 (775)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888999888888777778888888887666555432 2222222344445555555555555555444444
No 49
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.74 E-value=0.00037 Score=82.20 Aligned_cols=159 Identities=24% Similarity=0.331 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhh-h-hhhhhHHH-HhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q psy15551 35 QSAEFKAKIMESQAA-S-SLFRYREK-TRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE------ 105 (640)
Q Consensus 35 q~~~~k~k~~e~~~~-~-~~~~d~~k-~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e------ 105 (640)
++..||+|.-....+ . .+-..|-| .+.|..+..+++....-...+...-..|+.++..+.-++..+.....
T Consensus 300 El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKq 379 (859)
T PF01576_consen 300 ELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQ 379 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665443333 1 12222222 34455555555555555555555555566666666655555433211
Q ss_pred -----HHHHHHHHHHHhhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCC-Ccc--
Q psy15551 106 -----DTADLVETLEMMTLDKEM-------AEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGT-EVS-- 170 (640)
Q Consensus 106 -----~~~d~~~~lem~tldkem-------aee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~-~~~-- 170 (640)
.++++...++-.....+- .+-.+-.|+.+++.+.+.++.++-+...|..++....+..++++ .+.
T Consensus 380 r~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eL 459 (859)
T PF01576_consen 380 RKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHEL 459 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHH
Confidence 334443333333333333 33344445555555566666666666666666666544322221 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Q psy15551 171 HYQIKQLEQQNMRLRETLVRLRD 193 (640)
Q Consensus 171 ~~~~~qle~qN~rLreaLvrlRd 193 (640)
--..++||.+...|+.+|--+=+
T Consensus 460 ek~kr~LE~e~~El~~~leE~E~ 482 (859)
T PF01576_consen 460 EKAKRRLEQEKEELQEQLEEAED 482 (859)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22456788887777777654433
No 50
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.60 E-value=2 Score=49.14 Aligned_cols=149 Identities=22% Similarity=0.232 Sum_probs=77.9
Q ss_pred HHHHhhhhHHHHHHHHHHHhhhhhhhhHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H
Q psy15551 29 MKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAV------E 102 (640)
Q Consensus 29 ~~~ql~q~~~~k~k~~e~~~~~~~~~d~~k~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~------~ 102 (640)
...+++.+..||..|+..- +...=.|++.|.-.-.-...+..++.+|.+.....--++...=-+..++. .
T Consensus 23 ~~k~i~~Le~~k~~l~~~p----v~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~k 98 (560)
T PF06160_consen 23 YYKEIDELEERKNELMNLP----VADELSKVKKLNLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKK 98 (560)
T ss_pred HHHHHHHHHHHHHHHHcCC----HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHH
Confidence 4457888888998877543 33344566666323233446677888888877654444433322222221 1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHhhhhhcCCCCCCCCcchHHHH
Q psy15551 103 AKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIE-------LMKADIEKSCDGAGDGTEVSHYQIK 175 (640)
Q Consensus 103 ~~e~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e-------~lk~e~e~~~~~~~~~~~~~~~~~~ 175 (640)
++..+.++.+.|. -+++....+..+|+.+.+.-++-..+++ -+|..+-.....-| ..+.
T Consensus 99 a~~~i~~~~~~l~-------~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G-------~a~~ 164 (560)
T PF06160_consen 99 AKQAIKEIEEQLD-------EIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYG-------PAIE 164 (560)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-------hhHH
Confidence 2223333333332 2456666666666666554444444444 44444333222212 2345
Q ss_pred HHHHHHHHHHHHHHHhhhch
Q psy15551 176 QLEQQNMRLRETLVRLRDLS 195 (640)
Q Consensus 176 qle~qN~rLreaLvrlRd~s 195 (640)
.||++-..+-.-....-.++
T Consensus 165 ~Le~~L~~ie~~F~~f~~lt 184 (560)
T PF06160_consen 165 ELEKQLENIEEEFSEFEELT 184 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66777666666666666666
No 51
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.59 E-value=3.2 Score=51.46 Aligned_cols=59 Identities=19% Similarity=0.315 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhhch
Q psy15551 126 ERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLS 195 (640)
Q Consensus 126 e~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvrlRd~s 195 (640)
.+.+.++.+...+...+..+..+..-++...+. ...+...+.++...++..+..|-.+=
T Consensus 476 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 476 KRLEQAQEQQNQAQQAVEELQAEEQELRKERDQ-----------AEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444444433222 23345566666666666666665543
No 52
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.51 E-value=1.9 Score=47.92 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy15551 352 QEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEI 424 (640)
Q Consensus 352 ~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~ 424 (640)
...+..++.+++..+...+..+ ..+..++..++.+|+.|+..+.+++ .|.++.++|.+...+.
T Consensus 332 ~~~~~~~i~el~~~i~~~~~~i----------~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~ 395 (562)
T PHA02562 332 FNEQSKKLLELKNKISTNKQSL----------ITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTK 395 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Confidence 3334444455555554444443 3355555555556666655555555 5555555555555443
No 53
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.48 E-value=0.34 Score=46.36 Aligned_cols=73 Identities=21% Similarity=0.263 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy15551 347 ELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQE 419 (640)
Q Consensus 347 ~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEE 419 (640)
.+......|..++..+|.+|+.+.++|..+-..-+..+.....+..|..+|.-|++.++..+ .|++....|.+
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e 105 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLRE 105 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444444444455555555555555555 44444444443
No 54
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.48 E-value=0.95 Score=45.48 Aligned_cols=133 Identities=19% Similarity=0.226 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEI 404 (640)
Q Consensus 325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetI 404 (640)
...|.+|..+.+..+.......++......|..-|..++..++.|+.++...----..+..+..+...++.++..|+-..
T Consensus 30 ksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~ 109 (201)
T PF13851_consen 30 KSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEH 109 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788888888888888888888888888999999999999999999998776666778888888888899999999888
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 405 VDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRE 457 (640)
Q Consensus 405 eDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE 457 (640)
+.|+ .+..+..+-.+....++..+.+=.....-..-=+.+++....+.++..+
T Consensus 110 evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~ke 163 (201)
T PF13851_consen 110 EVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKE 163 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888 8888888888877777755544444444444444555555555555433
No 55
>KOG0995|consensus
Probab=96.44 E-value=2.6 Score=48.64 Aligned_cols=105 Identities=18% Similarity=0.203 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhcHHHHHHHHHHHHHHHHHHHHH
Q psy15551 325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHE-----QVDAALGAEEMVQQLSVQKLELEDLVSK 399 (640)
Q Consensus 325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~-----q~d~a~gAEEMVEELTEKNleLEEKIeE 399 (640)
.....+...||..+..+..-.++++.....++-++..+++.|.-.++ +.+....++.+.++|...++.+...+.+
T Consensus 435 ~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~ 514 (581)
T KOG0995|consen 435 HEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKE 514 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667788888899999999999999999999999999988764 5677888889999999999999888888
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy15551 400 QAEEIVDLE-ALQVVSDQLQEDAKEIEIELK 429 (640)
Q Consensus 400 LEetIeDLE-aLkELnDELEEnhvE~EKeLR 429 (640)
...-+...+ .+..+....++-.....++|.
T Consensus 515 a~~~v~s~e~el~~~~~~~~eer~ki~~ql~ 545 (581)
T KOG0995|consen 515 AEELVKSIELELDRMVATGEEERQKIAKQLF 545 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777777 666655555554444433333
No 56
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.34 E-value=0.82 Score=43.78 Aligned_cols=121 Identities=20% Similarity=0.227 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HH
Q psy15551 352 QEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIE---IE 427 (640)
Q Consensus 352 ~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~E---Ke 427 (640)
.+....+...+++.+..|.+. ....+..|..|+.+|..++..|..++..+.+.. .+.+...... +.-.+. ..
T Consensus 9 ~d~a~~r~e~~e~~~K~le~~---~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~-~~E~l~rriq~ 84 (143)
T PF12718_consen 9 ADNAQDRAEELEAKVKQLEQE---NEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKS-NAEQLNRRIQL 84 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hHHHHHhhHHH
Confidence 344455556666666666554 456777888888888888888888888888877 4443322221 111111 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15551 428 LKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALE 476 (640)
Q Consensus 428 LREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeE 476 (640)
|.++++..+..+.+...++.......+.++..+..+..........+.+
T Consensus 85 LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ee 133 (143)
T PF12718_consen 85 LEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEE 133 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5555665555555555555555555555555555554444444444443
No 57
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.32 E-value=3.4 Score=48.78 Aligned_cols=47 Identities=23% Similarity=0.349 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHE 371 (640)
Q Consensus 325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~ 371 (640)
...|.+++.++++.|.+...+..|.....+=++-+..+|..+.+.+.
T Consensus 456 r~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~ 502 (697)
T PF09726_consen 456 RSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERR 502 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888888888888888877655543
No 58
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.29 E-value=0.0032 Score=72.71 Aligned_cols=145 Identities=19% Similarity=0.188 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 331 MSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQ---QLSVQKLELEDLVSKQAEEIVDL 407 (640)
Q Consensus 331 ~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVE---ELTEKNleLEEKIeELEetIeDL 407 (640)
+..+...++.++.....+.+....|..++.-+-..|.-|+.||+..-.-+.+.. ..+.+...+++-+..+.....++
T Consensus 380 ~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~el 459 (722)
T PF05557_consen 380 KEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDEYKAEL 459 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHHHHHHH
Confidence 344445555555555555555556667777777889999999986433222221 11222223333333333333333
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15551 408 E-ALQVVSDQLQEDAKEIEIELKEEVEMARSA-------TREVIREKEAALESLADRELTIVKFRELVIREKEAALE 476 (640)
Q Consensus 408 E-aLkELnDELEEnhvE~EKeLREELD~kdsq-------IrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeE 476 (640)
+ .+..+..++...... ...+..++...... +.....++..++..+..++..+.+.+..+..|...|..
T Consensus 460 e~~l~~l~~~l~~~k~~-~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 460 EAQLEELEEELSEQKQR-NETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp -----------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcc-ccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 344444444433221 12223333322222 23345667778888888888888888888888888875
No 59
>PRK01156 chromosome segregation protein; Provisional
Probab=96.29 E-value=3.6 Score=48.83 Aligned_cols=26 Identities=8% Similarity=0.272 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy15551 128 AETLQVELDLAKEKIEELTLDIELMK 153 (640)
Q Consensus 128 ~e~l~~el~~~k~k~eel~le~e~lk 153 (640)
.+.++.++..++.++.++...++-++
T Consensus 418 ~~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 418 LQDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555554
No 60
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.08 E-value=4.2 Score=47.49 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHhhh
Q psy15551 75 FKAKIMESQAGLKRELEKLKQEKQEAVEAKE----DTADLVETLEMMTLDKEMAE--ERAETLQVELDLAKEKIEELTLD 148 (640)
Q Consensus 75 ~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e----~~~d~~~~lem~tldkemae--e~~e~l~~el~~~k~k~eel~le 148 (640)
-.+.|+.....+-.++..++.+++....... .+++|...+....-...-|. +.-..|+.++..++.+++.|.-.
T Consensus 23 e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~q 102 (617)
T PF15070_consen 23 ESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQ 102 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666777777777777766654433 33333333222221111111 11135666666666666666655
Q ss_pred HHHHH
Q psy15551 149 IELMK 153 (640)
Q Consensus 149 ~e~lk 153 (640)
+...-
T Consensus 103 lqaqv 107 (617)
T PF15070_consen 103 LQAQV 107 (617)
T ss_pred HHHHH
Confidence 55443
No 61
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.03 E-value=1.3 Score=47.17 Aligned_cols=52 Identities=25% Similarity=0.394 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 354 KLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 354 ~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
.|...+..+..+.+.|...+...- +.+..+..+...|..++..|++...+++
T Consensus 153 ~L~~~~~~L~~D~~~L~~~~~~l~---~~~~~l~~~~~~L~~e~~~Lk~~~~e~~ 204 (325)
T PF08317_consen 153 GLEENLELLQEDYAKLDKQLEQLD---ELLPKLRERKAELEEELENLKQLVEEIE 204 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344444445555544444443332 3355566666666666666666655544
No 62
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.03 E-value=2.1 Score=43.62 Aligned_cols=61 Identities=25% Similarity=0.338 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhhchh
Q psy15551 122 EMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSA 196 (640)
Q Consensus 122 emaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvrlRd~s~ 196 (640)
+-|+++++.++.+|.....+.+..+.++.-|..-+...-+. |++...||..+.-+|-.++.
T Consensus 11 d~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~--------------le~~eerL~~~~~kL~~~e~ 71 (237)
T PF00261_consen 11 DEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEE--------------LERAEERLEEATEKLEEAEK 71 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555444332222 45556666666666666653
No 63
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.99 E-value=1.2 Score=46.37 Aligned_cols=78 Identities=18% Similarity=0.311 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 328 KHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVD 406 (640)
Q Consensus 328 k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeD 406 (640)
+.++..+.+.++.+..+...+..+...+...+..+.+.+++...++ .+.--+.+...|+-....+.+++..|+..+.+
T Consensus 37 ~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~ 114 (239)
T COG1579 37 KAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAKERINSLEDELAE 114 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444 22223344444444444444444444444433
No 64
>KOG0963|consensus
Probab=95.98 E-value=4.5 Score=47.09 Aligned_cols=56 Identities=16% Similarity=0.119 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 422 KEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALES 477 (640)
Q Consensus 422 vE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL 477 (640)
.+-.+.|+.|.-.+++....+..++.......+....++.--++.+..+..++...
T Consensus 382 l~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~~~ 437 (629)
T KOG0963|consen 382 LEKNRKLQNENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLLKV 437 (629)
T ss_pred HHHHhhhhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHhhc
Confidence 34446667777777777777777888888888888888888888888888888754
No 65
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.96 E-value=2.2 Score=43.31 Aligned_cols=43 Identities=12% Similarity=0.002 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 433 EMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAAL 475 (640)
Q Consensus 433 D~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLe 475 (640)
-.+++.+.+-.++|..+...++.|..++...|-.+++|.+++-
T Consensus 147 ~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~ 189 (193)
T PF14662_consen 147 CQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLS 189 (193)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666677777777777777777777777777777664
No 66
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.94 E-value=3.2 Score=44.98 Aligned_cols=150 Identities=14% Similarity=0.203 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhhcHHHHHHHHHHHHHHHHHHH
Q psy15551 329 HEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVD-----------AALGAEEMVQQLSVQKLELEDLV 397 (640)
Q Consensus 329 ~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d-----------~a~gAEEMVEELTEKNleLEEKI 397 (640)
..+.-|-++++.-..|..++.-..+.|+.+-..+...+.++..+.+ .--.+-.++.+..++|..|...+
T Consensus 9 eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev 88 (319)
T PF09789_consen 9 EALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEV 88 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888888888888888888888888888875533 12345578899999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 398 SKQAEEIVDLE-ALQVVSDQLQEDAKEIE-----------IELKEEVEMARSATREVIREKEAALESLADRELTIVKFRE 465 (640)
Q Consensus 398 eELEetIeDLE-aLkELnDELEEnhvE~E-----------KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRE 465 (640)
..|...+.++. .++-+...+....+... ..|=.+++....++..+++.+.......+++...=.-|+.
T Consensus 89 ~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~ 168 (319)
T PF09789_consen 89 EELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKC 168 (319)
T ss_pred HHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 77777777766655443 7788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q psy15551 466 LVIREKEAALESL 478 (640)
Q Consensus 466 LV~~LQedLeEL~ 478 (640)
.+..|+.+|.-++
T Consensus 169 K~~RLN~ELn~~L 181 (319)
T PF09789_consen 169 KAHRLNHELNYIL 181 (319)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998774
No 67
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.87 E-value=0.53 Score=50.05 Aligned_cols=141 Identities=27% Similarity=0.324 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhhhhhhhhHH-HHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy15551 38 EFKAKIMESQAASSLFRYRE-KTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAV-EAKEDTADLVETLE 115 (640)
Q Consensus 38 ~~k~k~~e~~~~~~~~~d~~-k~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~-~~~e~~~d~~~~le 115 (640)
+|+.++++.-.. .|-+..+ =-.|+..+.....++.+..+++.+..+.|..++..++.-..+.. ...+++..+...|.
T Consensus 141 eWR~~ll~gl~~-~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~ 219 (325)
T PF08317_consen 141 EWRMQLLEGLKE-GLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELA 219 (325)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHH
Confidence 456666555444 1222222 22455666666667777788888888888888887777666532 22234444444333
Q ss_pred HhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHH
Q psy15551 116 MMTLDKEMA--EERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQN 181 (640)
Q Consensus 116 m~tldkema--ee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN 181 (640)
.++.+++ ......++.++..++.++++++....-+.++|..........-..+..++..|...-
T Consensus 220 --~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~ 285 (325)
T PF08317_consen 220 --EQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKV 285 (325)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3333344 345567778888888888888888888888776643211111224666665544433
No 68
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.80 E-value=0.0076 Score=69.72 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 358 RVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQ 411 (640)
Q Consensus 358 kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLEaLk 411 (640)
++..+|+.++-+|+.+...-.+...|+.|.++|..+-+.+..|++.+....+++
T Consensus 309 r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~ 362 (713)
T PF05622_consen 309 RADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALK 362 (713)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 457789999999999999888889999999999988888888888887765543
No 69
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.67 E-value=5.4 Score=45.63 Aligned_cols=47 Identities=26% Similarity=0.238 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 428 LKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAA 474 (640)
Q Consensus 428 LREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedL 474 (640)
++++++.....+.++........+.+..+.......++.+..++..+
T Consensus 381 l~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L 427 (569)
T PRK04778 381 LQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKL 427 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444444433333
No 70
>KOG0977|consensus
Probab=95.54 E-value=2.6 Score=48.52 Aligned_cols=118 Identities=22% Similarity=0.263 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEI 404 (640)
Q Consensus 325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetI 404 (640)
.+...+..+++.++..+..++.+|.+..++....+.... .+++......-.++-.+..++-++..+++++..|+.++
T Consensus 102 ~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~r---e~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en 178 (546)
T KOG0977|consen 102 DETARERAKLEIEITKLREELKELRKKLEKAEKERRGAR---EKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAEN 178 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhH---HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333445666777777777777777776665544433333 33444555555667778888888888999999888888
Q ss_pred HHHH-HHHHHHHHHHHH---HHHHH---HHHHHHHHHHH----HHHHHHHHH
Q psy15551 405 VDLE-ALQVVSDQLQED---AKEIE---IELKEEVEMAR----SATREVIRE 445 (640)
Q Consensus 405 eDLE-aLkELnDELEEn---hvE~E---KeLREELD~kd----sqIrEL~rR 445 (640)
..|. .|..+..++..- .++.+ ..|.++|+++. ..|.+..+.
T Consensus 179 ~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~ 230 (546)
T KOG0977|consen 179 SRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRK 230 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 8887 777766666542 23333 77888888887 455544443
No 71
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.52 E-value=1.1 Score=48.46 Aligned_cols=132 Identities=26% Similarity=0.353 Sum_probs=80.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhcHHHHHHHHHHHHHHH
Q psy15551 320 LRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQV------DAALGAEEMVQQLSVQKLEL 393 (640)
Q Consensus 320 l~d~~~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~------d~a~gAEEMVEELTEKNleL 393 (640)
|..+-.+.|.+...|..+++. |++++.++..+|.-|++++ +...|+..-. .....|
T Consensus 70 La~lL~~sre~Nk~L~~Ev~~--------------Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~----~ere~l 131 (319)
T PF09789_consen 70 LAQLLSESREQNKKLKEEVEE--------------LRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP----HEREDL 131 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhchHHHHHHHHHhhhhhhccccccccc----hHHHHH
Confidence 333344555555555555555 4455555555555555543 2333333211 555556
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH------HHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Q psy15551 394 EDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIE------IELKEE--------------VEMARSATREVIREKEAALES 452 (640)
Q Consensus 394 EEKIeELEetIeDLE-aLkELnDELEEnhvE~E------KeLREE--------------LD~kdsqIrEL~rRIeq~eEq 452 (640)
=.+++.++..+..|+ .++.+-||.++...|-- ..|..| ||.+-...+=+..|+.+++++
T Consensus 132 V~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE 211 (319)
T PF09789_consen 132 VEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEE 211 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666677776 66666666666655543 344444 555556667788899999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15551 453 LADRELTIVKFRELVIR 469 (640)
Q Consensus 453 LEDlE~TIsKFRELV~~ 469 (640)
..-...+|++|+..+..
T Consensus 212 ~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 212 KELLKQTINKYKSALER 228 (319)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988774
No 72
>PRK09039 hypothetical protein; Validated
Probab=95.48 E-value=2.1 Score=46.22 Aligned_cols=123 Identities=12% Similarity=0.128 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy15551 331 MSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-A 409 (640)
Q Consensus 331 ~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-a 409 (640)
|..|-.-+.--.+.++.+......+...+..+++.-+.|..+.... .+....+..+-..++.++.+.+..+.+.- .
T Consensus 62 Ia~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~---~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~ 138 (343)
T PRK09039 62 IAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAEL---AGAGAAAEGRAGELAQELDSEKQVSARALAQ 138 (343)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhcchHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3333333333345556666666667777777777777777766522 22233455555566677777777777666 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 410 LQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFR 464 (640)
Q Consensus 410 LkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFR 464 (640)
+.-++.+++....+ +..++..|...+.+....+.+++++...|....
T Consensus 139 V~~L~~qI~aLr~Q--------la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 139 VELLNQQIAALRRQ--------LAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655444 445555555555555555555555555554443
No 73
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.48 E-value=6.9 Score=45.56 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 397 VSKQAEEIVDLE-ALQVVSDQLQEDAKEIE---IELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKE 472 (640)
Q Consensus 397 IeELEetIeDLE-aLkELnDELEEnhvE~E---KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQe 472 (640)
|..|+.-|+.-+ .+.++..+.+..+..+. ..|+.....+.........++......+......|..--+....|..
T Consensus 396 i~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~ 475 (594)
T PF05667_consen 396 IAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVK 475 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 45555555555555444 44444444455555566677777888888888888888888888888
Q ss_pred HHHhh
Q psy15551 473 AALES 477 (640)
Q Consensus 473 dLeEL 477 (640)
+++.+
T Consensus 476 e~e~~ 480 (594)
T PF05667_consen 476 ELEKL 480 (594)
T ss_pred HHHhC
Confidence 88876
No 74
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=95.18 E-value=3.8 Score=40.79 Aligned_cols=99 Identities=18% Similarity=0.375 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 324 SAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAAL--GAEEMVQQLSVQKLELEDLVSKQA 401 (640)
Q Consensus 324 ~~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~--gAEEMVEELTEKNleLEEKIeELE 401 (640)
+.-..+.|..++..+.+.+..++........++.++..++..+.++..+...|+ |-+++-...-.+...++..+..++
T Consensus 25 ~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~ 104 (221)
T PF04012_consen 25 EKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLE 104 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788889999999999999999999999999999999999999998886 456777777777777777777777
Q ss_pred HHHHHHH-HHHHHHHHHHHHHH
Q psy15551 402 EEIVDLE-ALQVVSDQLQEDAK 422 (640)
Q Consensus 402 etIeDLE-aLkELnDELEEnhv 422 (640)
..+..+. ....+...|.....
T Consensus 105 ~~~~~~~~~~~~l~~~l~~l~~ 126 (221)
T PF04012_consen 105 QQLDQAEAQVEKLKEQLEELEA 126 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766 55555555544433
No 75
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.17 E-value=3.4 Score=44.38 Aligned_cols=118 Identities=15% Similarity=0.147 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 353 EKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEV 432 (640)
Q Consensus 353 ~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLEaLkELnDELEEnhvE~EKeLREEL 432 (640)
+.|...+..+.++-.-|..++..+- +.+..|.++...|..++..|+....+++... .++|...+ +.-.....++
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~---~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d--~~eL~~lk-~~l~~~~~ei 220 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLN---SIKPKLRDRKDALEEELRQLKQLEDELEDCD--PTELDRAK-EKLKKLLQEI 220 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHhCC--HHHHHHHH-HHHHHHHHHH
Confidence 3344444445555444544444332 3466667777777777777777666665322 23333333 2223334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15551 433 EMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALE 476 (640)
Q Consensus 433 D~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeE 476 (640)
..+...+.+++.++......|++....+..++..++.++..+.+
T Consensus 221 ~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~ 264 (312)
T smart00787 221 MIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555555555555555555555554443
No 76
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.09 E-value=2.9 Score=44.24 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=15.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhh
Q psy15551 170 SHYQIKQLEQQNMRLRETLVRLRD 193 (640)
Q Consensus 170 ~~~~~~qle~qN~rLreaLvrlRd 193 (640)
...+..+++.+..+++..+.+|+.
T Consensus 79 ~~~~l~~l~~~~~~l~a~~~~l~~ 102 (423)
T TIGR01843 79 VEADAAELESQVLRLEAEVARLRA 102 (423)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344666677777777766665544
No 77
>PRK10698 phage shock protein PspA; Provisional
Probab=95.09 E-value=3.8 Score=41.78 Aligned_cols=84 Identities=18% Similarity=0.357 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAAL--GAEEMVQQLSVQKLELEDLVSKQAE 402 (640)
Q Consensus 325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~--gAEEMVEELTEKNleLEEKIeELEe 402 (640)
.-.+.=++.+..++.+.++..+........+.+++..++..++++..+--.|+ |=++.-..--.+.....+++..|+.
T Consensus 27 k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~ 106 (222)
T PRK10698 27 KLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEH 106 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678888899999999999999999999999999999999999998887 4556666634444444445444444
Q ss_pred HHHHHH
Q psy15551 403 EIVDLE 408 (640)
Q Consensus 403 tIeDLE 408 (640)
.+....
T Consensus 107 ~~~~~~ 112 (222)
T PRK10698 107 EVTLVD 112 (222)
T ss_pred HHHHHH
Confidence 444444
No 78
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.90 E-value=5.3 Score=41.76 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 383 VQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 383 VEELTEKNleLEEKIeELEetIeDLE 408 (640)
++.+..+...++..|.++++.+++.+
T Consensus 54 ~e~le~qv~~~e~ei~~~r~r~~~~e 79 (239)
T COG1579 54 LEDLENQVSQLESEIQEIRERIKRAE 79 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 79
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.79 E-value=2.1 Score=51.04 Aligned_cols=142 Identities=23% Similarity=0.324 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHH----HHHHHHHHHHHHHHHHH
Q psy15551 329 HEMSKLQKDIEEKKQENAE-------LIKSQEKLKQRVTELEADCADLHEQVDAALGAE----EMVQQLSVQKLELEDLV 397 (640)
Q Consensus 329 ~~~~~~~~~~e~~~~~~~~-------l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAE----EMVEELTEKNleLEEKI 397 (640)
.....+..+++..+.+... .....+.++.+|.++|..+..|+-++..+-... ..++-.++.+..++-++
T Consensus 589 ~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~ 668 (769)
T PF05911_consen 589 SEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRL 668 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344455555555555544 444788888899999999999999998765544 44444666677777766
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Q psy15551 398 SKQAEEIVDLE-ALQVVSDQLQEDAK---EIE---IELKEEVEMARSATR-----------EVIREKEAALESLADRELT 459 (640)
Q Consensus 398 eELEetIeDLE-aLkELnDELEEnhv---E~E---KeLREELD~kdsqIr-----------EL~rRIeq~eEqLEDlE~T 459 (640)
..+++.+..+- .+.-+..+|+.-+. +.. ..|..++......-. .....|..+...+.+++.|
T Consensus 669 ~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeT 748 (769)
T PF05911_consen 669 KDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQET 748 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHH
Confidence 66666666666 56666666655332 222 556666655543221 2234777888888889988
Q ss_pred HHHHHHHHHHH
Q psy15551 460 IVKFRELVIRE 470 (640)
Q Consensus 460 IsKFRELV~~L 470 (640)
|..+...+..|
T Consensus 749 I~sLGkQLksL 759 (769)
T PF05911_consen 749 IASLGKQLKSL 759 (769)
T ss_pred HHHHHHHHHhc
Confidence 87655444433
No 80
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=94.72 E-value=7.2 Score=42.83 Aligned_cols=188 Identities=17% Similarity=0.129 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q psy15551 332 SKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-AL 410 (640)
Q Consensus 332 ~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aL 410 (640)
.+.-.-+++-..+..+|+.+.++|+.+|..+..-+..-+-..+ -+|..|-.+.++|.-++-++.++...+.+.| .-
T Consensus 88 r~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q---~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeees 164 (401)
T PF06785_consen 88 RKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQ---HLEGLIRHLREENQCLQLQLDALQQECGEKEEES 164 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHH
Confidence 3344556666777777888888888888777665555544333 3566688888888888888887777776655 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------cC
Q psy15551 411 QVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESL----------AD 480 (640)
Q Consensus 411 kELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL~----------~~ 480 (640)
..++.| |.+.+.+...-..+.+.-+..+...+...+.-|++++..|++|--++..++ +.
T Consensus 165 q~LnrE-----------LaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~~~~e~~p~ 233 (401)
T PF06785_consen 165 QTLNRE-----------LAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQLESDMKESMPS 233 (401)
T ss_pred HHHHHH-----------HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Confidence 343333 345555555666666666677777777777788888888877766665441 11
Q ss_pred hhh---HHh-h--HHhhhhhhhhcchHHHHHHHhHhHhhcCCCCCCCCCCchHHHHHHHHHHh
Q psy15551 481 REL---TIV-K--FRELNSLDEKVSTENIEKCVTYFNTFYPVLFPDTKFSHVGHLLMDYVKIL 537 (640)
Q Consensus 481 ~~~---~~~-~--~sasKA~~k~IEaeqA~~hl~~l~~FLPdsF~~~GGD~DsVl~lLlf~RL 537 (640)
.+. -++ + ++.-|.-+-.++--.+.++++-.+.|-.++= .-|-|+-+.=+|+-|
T Consensus 234 ~~~~~s~~v~~ql~selkkivf~~enie~A~slTasry~~~e~s----vhnysLdcRrLfDsL 292 (401)
T PF06785_consen 234 TPSPSSQDVPKQLVSELKKIVFKVENIEAASSLTASRYINSESS----VHNYSLDCRRLFDSL 292 (401)
T ss_pred CCcchhhhhHHHHHHHHHHHHHHHhhHHHHHHhhHHhhhccCCc----cccchHHHHHHHhhh
Confidence 111 111 1 3444544444455556666665555554431 125555544444444
No 81
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.69 E-value=2.2 Score=49.68 Aligned_cols=102 Identities=13% Similarity=0.216 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------
Q psy15551 325 AHEKHEMSKLQKDIEEKKQE---------------NAELIKSQEKLKQRVTELEADCADLHEQVDAA------------- 376 (640)
Q Consensus 325 ~~~k~~~~~~~~~~e~~~~~---------------~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a------------- 376 (640)
...+.++...+..++.+++. ++++.......+.+...+++....++.++...
T Consensus 204 ~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~ 283 (754)
T TIGR01005 204 ADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQ 283 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCc
Confidence 55556666666666666543 33333334444444444555555555555321
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy15551 377 LGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEI 426 (640)
Q Consensus 377 ~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EK 426 (640)
++..+.+..|..+...++.++.++...+.+-- .+..+..++.+.+.+...
T Consensus 284 ~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~ 334 (754)
T TIGR01005 284 LKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRS 334 (754)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12236777777777777777777777654443 455555555555554443
No 82
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.63 E-value=5.6 Score=40.08 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEI 404 (640)
Q Consensus 325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetI 404 (640)
.+.+..|..+..+...+..-+..+....+.|+.++...+.+...|..---..--.+..+..|.-.+..|+.++..++.+-
T Consensus 44 ~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Er 123 (201)
T PF13851_consen 44 ERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQER 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555566666666666665555544433344456666666666666666666666666
Q ss_pred HHHH-H----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy15551 405 VDLE-A----LQVVSDQLQEDAKEIE---IELKEEVEMARSATREVIRE 445 (640)
Q Consensus 405 eDLE-a----LkELnDELEEnhvE~E---KeLREELD~kdsqIrEL~rR 445 (640)
++|. . +.++......-+.=++ ..|.+.++.+++++.+....
T Consensus 124 deL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~ 172 (201)
T PF13851_consen 124 DELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAA 172 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665 2 2233322222222222 55666666666666655543
No 83
>KOG0964|consensus
Probab=94.51 E-value=16 Score=44.88 Aligned_cols=95 Identities=20% Similarity=0.190 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 380 EEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADREL 458 (640)
Q Consensus 380 EEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~ 458 (640)
...++.|..-..+..+....+...+.+++ .+.+..+++.+...... +.+-.++..++.+.++.++.......-..+=.
T Consensus 396 r~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~-e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWR 474 (1200)
T KOG0964|consen 396 RSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSIN-ETKGRMEEFDAENTELKRELDELQDKRKELWR 474 (1200)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666777777777777777 66666666665555443 44445555555555555555554444444444
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15551 459 TIVKFRELVIREKEAAL 475 (640)
Q Consensus 459 TIsKFRELV~~LQedLe 475 (640)
.-.+.+..+..+.+++.
T Consensus 475 EE~~l~~~i~~~~~dl~ 491 (1200)
T KOG0964|consen 475 EEKKLRSLIANLEEDLS 491 (1200)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444555555555444
No 84
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.10 E-value=15 Score=42.71 Aligned_cols=143 Identities=22% Similarity=0.331 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHhhHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q psy15551 36 SAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAE-FKAKIMESQAGLKRELEKLKQEKQEAVEAKE---DTADLV 111 (640)
Q Consensus 36 ~~~~k~k~~e~~~~~~~~~d~~k~~~l~~~~~~~~~~~~-~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e---~~~d~~ 111 (640)
..+|-..|+-.--..-.|=|=|++.+|..- +...+ ++.-+ ...-||.. +..|+..+..+..... ...++.
T Consensus 135 ~~~~i~~ilp~~~~~~FfFDGE~I~~la~~----~~~~~~l~~Ai-~~LlGl~~-~~~L~~dl~~~~~~~~~~~~~~~~~ 208 (650)
T TIGR03185 135 WDEFINELLPLELADLFFFDGEKIEALANP----DRLASLLKEAI-EVLLGLDL-IDRLAGDLTNVLRRRKKSELPSSIL 208 (650)
T ss_pred HHHHHHHhCCHhHHHHhcccHHHHHHHhcc----ccchHHHHHHH-HHHhCcHH-HHHHHHHHHHHHHHHHhcccchHHH
Confidence 344555555444445567788888766431 12222 22222 22333333 5555555555443222 111222
Q ss_pred HHHHHhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q psy15551 112 ETLEMMTLDKEM--AEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLV 189 (640)
Q Consensus 112 ~~lem~tldkem--aee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLv 189 (640)
..+ ..|++++ ++.+.+.+..++..++..++.+...++-+++++.. .| |+ .--...+|+.+-..++..+.
T Consensus 209 ~~~--~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~--~G-G~----~~~~r~~Le~ei~~le~e~~ 279 (650)
T TIGR03185 209 SEI--EALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS--EG-GD----LFEEREQLERQLKEIEAARK 279 (650)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hc-ch----HHHHHHHHHHHHHHHHHHHH
Confidence 211 1222222 22333344444444444444444444444444433 12 21 22225566766666666655
Q ss_pred Hhhh
Q psy15551 190 RLRD 193 (640)
Q Consensus 190 rlRd 193 (640)
+.++
T Consensus 280 e~~~ 283 (650)
T TIGR03185 280 ANRA 283 (650)
T ss_pred HHHH
Confidence 4443
No 85
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=94.07 E-value=6.2 Score=38.33 Aligned_cols=143 Identities=19% Similarity=0.181 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 335 QKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVS 414 (640)
Q Consensus 335 ~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLEaLkELn 414 (640)
..+++...-.+..+.....++..++...+.--+.||. || -++|.-.|..|.++|++=...+..|-...--.
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~-iD--------FeqLkien~~l~~kIeERn~eL~~Lk~~~~~~ 75 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHL-ID--------FEQLKIENQQLNEKIEERNKELLKLKKKIGKT 75 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH-HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666666666666555554444442 22 46788888999998888887777766221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhH-Hhh
Q psy15551 415 DQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELT-IVK 487 (640)
Q Consensus 415 DELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL~~~~~~~-~~~ 487 (640)
-..-....+....+..++......|......+......+........+.+.....+..+...+ ..|++| |+-
T Consensus 76 v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~-~~P~ll~Dy~ 148 (177)
T PF13870_consen 76 VQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLL-GVPALLRDYD 148 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCcHHHHHHH
Confidence 111111122223444444444444444444444444444444444444444444443333332 567777 664
No 86
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.01 E-value=8 Score=39.39 Aligned_cols=75 Identities=24% Similarity=0.285 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 327 EKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVD 406 (640)
Q Consensus 327 ~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeD 406 (640)
...++++|+..++.....++.|......| ......++.-|.-|=..++.++.|..---.+++.-..|-+.-..
T Consensus 20 L~~en~kL~~~ve~~ee~na~L~~e~~~L-------~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rq 92 (193)
T PF14662_consen 20 LADENAKLQRSVETAEEGNAQLAEEITDL-------RKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQ 92 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666665554444433 33333445555555555666666665555555555555555554
Q ss_pred HH
Q psy15551 407 LE 408 (640)
Q Consensus 407 LE 408 (640)
+|
T Consensus 93 lE 94 (193)
T PF14662_consen 93 LE 94 (193)
T ss_pred HH
Confidence 44
No 87
>KOG0980|consensus
Probab=93.95 E-value=10 Score=45.88 Aligned_cols=151 Identities=24% Similarity=0.249 Sum_probs=77.2
Q ss_pred hhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcHHHHHHHHHHHHH
Q psy15551 319 RLRDLSAHEKHEMSKLQKDI---EEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAA----LGAEEMVQQLSVQKL 391 (640)
Q Consensus 319 ~l~d~~~~~k~~~~~~~~~~---e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a----~gAEEMVEELTEKNl 391 (640)
+||+..+.....-..+++-. ++.....-.....+++++.+.+++...-.+|..+.|.. -.++.-+.+..++|.
T Consensus 390 qLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~ 469 (980)
T KOG0980|consen 390 QLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENT 469 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45554454444444444443 55555566667777888888888887777777766543 223334446666666
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy15551 392 ELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLAD-RELTIVKFRELVIR 469 (640)
Q Consensus 392 eLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLED-lE~TIsKFRELV~~ 469 (640)
+|.+.|+++...-..++ ...+..+.++....|.. -+..++......+..+...-.....++++ ..+....+-+++..
T Consensus 470 ~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~-~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~ 548 (980)
T KOG0980|consen 470 NLNDQLEELQRAAGRAETKTESQAKALESLRQELA-LLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAR 548 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 66666666666665555 44444444444333332 12223333333333333333333334443 33333444444443
Q ss_pred H
Q psy15551 470 E 470 (640)
Q Consensus 470 L 470 (640)
.
T Consensus 549 ~ 549 (980)
T KOG0980|consen 549 E 549 (980)
T ss_pred H
Confidence 3
No 88
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.88 E-value=19 Score=43.35 Aligned_cols=19 Identities=11% Similarity=-0.005 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHHhhhhcC
Q psy15551 583 ENIEKCVTYFNTFYPVLFP 601 (640)
Q Consensus 583 E~FEKI~~YFn~IFsvLFg 601 (640)
+.|--+..+==.+...+-+
T Consensus 820 E~~~~sLalrLALs~~~~~ 838 (908)
T COG0419 820 ERFLASLALRLALSDLLQG 838 (908)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4444444444444433333
No 89
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.76 E-value=7.4 Score=41.19 Aligned_cols=25 Identities=12% Similarity=0.315 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15551 452 SLADRELTIVKFRELVIREKEAALE 476 (640)
Q Consensus 452 qLEDlE~TIsKFRELV~~LQedLeE 476 (640)
.+.+....+...+..+..++..+..
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555555555555555554
No 90
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=93.67 E-value=1.2 Score=51.55 Aligned_cols=86 Identities=19% Similarity=0.255 Sum_probs=65.4
Q ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 375 AALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESL 453 (640)
Q Consensus 375 ~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqL 453 (640)
.-...+.+|+.|+.+|.+|+..+.+|+..|+.|+ .|..+..+.. .+.....|+..++..|..|.+++......+
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-----~~~~~~rei~~~~~~I~~L~~~L~e~~~~v 497 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-----DKVRKDREIRARDRRIERLEKELEEKKKRV 497 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888888888888888888888888888 7777766655 334556777778888888888888888888
Q ss_pred HHHHHHHHHHHH
Q psy15551 454 ADRELTIVKFRE 465 (640)
Q Consensus 454 EDlE~TIsKFRE 465 (640)
+.++.++.+.+.
T Consensus 498 e~L~~~l~~l~k 509 (652)
T COG2433 498 EELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHH
Confidence 777777777663
No 91
>PF13514 AAA_27: AAA domain
Probab=93.56 E-value=25 Score=43.48 Aligned_cols=86 Identities=22% Similarity=0.269 Sum_probs=60.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q psy15551 111 VETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVR 190 (640)
Q Consensus 111 ~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvr 190 (640)
.+.++-..-..+.++++...++.+++.+..+...+...++..+......+...|-++..++..+...-..-..+++.+..
T Consensus 665 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~~~~~~ 744 (1111)
T PF13514_consen 665 LEEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEELREALAE 744 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566777777888888888888888888888888887777665555666666777776666666677777777
Q ss_pred hhhchh
Q psy15551 191 LRDLSA 196 (640)
Q Consensus 191 lRd~s~ 196 (640)
++++..
T Consensus 745 ~~~~~~ 750 (1111)
T PF13514_consen 745 IRELRR 750 (1111)
T ss_pred HHHHHH
Confidence 666653
No 92
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=93.54 E-value=0.02 Score=66.26 Aligned_cols=125 Identities=25% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 328 KHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDL 407 (640)
Q Consensus 328 k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDL 407 (640)
++.++.....++....+.++++-....|..++..-.+-..+.-..++.--.+-.-|..|-..+..|-+++..+...+..+
T Consensus 290 ~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l 369 (722)
T PF05557_consen 290 KRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELREL 369 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 33344444444555566666666666666666665554444322334433444556777788888888888888888888
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 408 E-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESL 453 (640)
Q Consensus 408 E-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqL 453 (640)
+ .+.++..+......+.. .++..+......+..+.++..-....+
T Consensus 370 ~~~~~~Le~e~~~l~~~~~-~l~~~~~~~~~~~~RLerq~~L~~kE~ 415 (722)
T PF05557_consen 370 EEEIQELEQEKEQLLKEIE-ELEASLEALKKLIRRLERQKALATKER 415 (722)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 66666666655443332 233333333344444444433333333
No 93
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.50 E-value=1.3 Score=43.85 Aligned_cols=88 Identities=24% Similarity=0.410 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy15551 334 LQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQV 412 (640)
Q Consensus 334 ~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkE 412 (640)
+..-+-....+++++.+++..+.++|..+...+..+...+-. -...|..|+..+-.|+.++..+...|.+.. .+..
T Consensus 72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~---~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~ 148 (194)
T PF08614_consen 72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSE---KERRLAELEAELAQLEEKIKDLEEELKEKNKANEI 148 (194)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccchhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445556666666666667777776666666554432 335588888888899999999999999988 8888
Q ss_pred HHHHHHHHHHHH
Q psy15551 413 VSDQLQEDAKEI 424 (640)
Q Consensus 413 LnDELEEnhvE~ 424 (640)
++||+...++++
T Consensus 149 l~DE~~~L~l~~ 160 (194)
T PF08614_consen 149 LQDELQALQLQL 160 (194)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888766
No 94
>KOG0612|consensus
Probab=93.48 E-value=27 Score=43.83 Aligned_cols=107 Identities=20% Similarity=0.307 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHH----HHHHHHHHHHHHHHHH
Q psy15551 325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQ----QLSVQKLELEDLVSKQ 400 (640)
Q Consensus 325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVE----ELTEKNleLEEKIeEL 400 (640)
++...+++-++.+++....|+..+ +|+..++.|...-.-|..--.+..-++ +++.+..-|.-.....
T Consensus 670 ~~~e~~lk~~q~~~eq~~~E~~~~---------~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~ 740 (1317)
T KOG0612|consen 670 IKLERKLKMLQNELEQENAEHHRL---------RLQDKEAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQS 740 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHhhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 444455566666666555555443 334445555555555544444433333 3444444443333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 401 AEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVI 443 (640)
Q Consensus 401 EetIeDLEaLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~ 443 (640)
+.... .++-..+.+...-..++..|.+|++.+..--+++.
T Consensus 741 ~~~~~---~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLs 780 (1317)
T KOG0612|consen 741 QEKLN---ELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELK 780 (1317)
T ss_pred ccchh---hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhh
Confidence 32333 33444555555556666777888888777777776
No 95
>KOG0250|consensus
Probab=93.42 E-value=26 Score=43.43 Aligned_cols=82 Identities=23% Similarity=0.299 Sum_probs=46.0
Q ss_pred HHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcc--hHHHHHHHHHHHH
Q psy15551 107 TADLVETL-EMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVS--HYQIKQLEQQNMR 183 (640)
Q Consensus 107 ~~d~~~~l-em~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~--~~~~~qle~qN~r 183 (640)
++++.+.+ .-++-+.+=.+.+.+.|+.+++.+.+-+..|..+.+-++.++.. .+++.. -..+.+|.++..-
T Consensus 381 I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~------~~ee~~~i~~~i~~l~k~i~~ 454 (1074)
T KOG0250|consen 381 IADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKE------EEEEKEHIEGEILQLRKKIEN 454 (1074)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHH
Confidence 34444333 44444445555566666666666666666666666655555443 122222 2467777777777
Q ss_pred HHHHHHHhhhc
Q psy15551 184 LRETLVRLRDL 194 (640)
Q Consensus 184 LreaLvrlRd~ 194 (640)
..+.|-.|++.
T Consensus 455 ~~~~l~~lk~~ 465 (1074)
T KOG0250|consen 455 ISEELKDLKKT 465 (1074)
T ss_pred HHHHHHHHHhc
Confidence 77776666654
No 96
>KOG0994|consensus
Probab=93.32 E-value=29 Score=43.63 Aligned_cols=72 Identities=19% Similarity=0.161 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhhch
Q psy15551 124 AEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLS 195 (640)
Q Consensus 124 aee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvrlRd~s 195 (640)
|--+|-.++.+|...+...+++-.-|-..|....+....+..+-+++..-.-|+++-|.+|+.-..-+||.-
T Consensus 1413 A~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Fl 1484 (1758)
T KOG0994|consen 1413 ALLMAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFL 1484 (1758)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555544433333222222221112233445566667899999999999999999865
No 97
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.14 E-value=15 Score=39.81 Aligned_cols=86 Identities=12% Similarity=0.201 Sum_probs=62.5
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 377 LGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIE--IELKEEVEMARSATREVIREKEAALESL 453 (640)
Q Consensus 377 ~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~E--KeLREELD~kdsqIrEL~rRIeq~eEqL 453 (640)
.++.+.+..-++.+...+++|..|-.+|-++. .++.+..|-++.+..+. ++-+.. +...+.+++.+-......+
T Consensus 216 a~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~---L~aEL~elqdkY~E~~~mL 292 (306)
T PF04849_consen 216 ASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQ---LQAELQELQDKYAECMAML 292 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 46677788888889999999999999999999 88888877777665554 333333 3455677777777777777
Q ss_pred HHHHHHHHHHHH
Q psy15551 454 ADRELTIVKFRE 465 (640)
Q Consensus 454 EDlE~TIsKFRE 465 (640)
.+.+..+.++|.
T Consensus 293 ~EaQEElk~lR~ 304 (306)
T PF04849_consen 293 HEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHhhC
Confidence 777666666653
No 98
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=93.10 E-value=11 Score=38.10 Aligned_cols=94 Identities=22% Similarity=0.412 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAAL--GAEEMVQQLSVQKLELEDLVSKQAE 402 (640)
Q Consensus 325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~--gAEEMVEELTEKNleLEEKIeELEe 402 (640)
.-...-+..+..++.+.+..++........++.++..++..+.++..+.-.|+ |-|++-...-.+....++.+..|+.
T Consensus 27 ~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~ 106 (219)
T TIGR02977 27 KMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALER 106 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888899999999999999999999999999999999999998887 5556666565566666666665555
Q ss_pred HHHHHH-HHHHHHHHHH
Q psy15551 403 EIVDLE-ALQVVSDQLQ 418 (640)
Q Consensus 403 tIeDLE-aLkELnDELE 418 (640)
.+..+. .+..+...+.
T Consensus 107 ~~~~~~~~v~~l~~~l~ 123 (219)
T TIGR02977 107 ELAAVEETLAKLQEDIA 123 (219)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 555544 3433333333
No 99
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.06 E-value=6.6 Score=44.78 Aligned_cols=122 Identities=14% Similarity=0.156 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHH
Q psy15551 348 LIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQ--VVSDQLQEDAKEI 424 (640)
Q Consensus 348 l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLk--ELnDELEEnhvE~ 424 (640)
|...+-.|+......++-+..++..-..-.|+ ++.|......-+++|+.|++.+..|- +++ .++-+=-+.....
T Consensus 300 l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~---l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~E 376 (622)
T COG5185 300 LREKWRALKSDSNKYENYVNAMKQKSQEWPGK---LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQE 376 (622)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhcchH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 33333334444444444444455554445554 66666666666666666666666665 332 2333323333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 425 EIELKEEVEMARSATREVIREKEAA----LESLADRELTIVKFRELVIREKE 472 (640)
Q Consensus 425 EKeLREELD~kdsqIrEL~rRIeq~----eEqLEDlE~TIsKFRELV~~LQe 472 (640)
...|-.+++....++.++..-+... +..+..++.+..+|..+..++.-
T Consensus 377 re~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~ 428 (622)
T COG5185 377 REKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITR 428 (622)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3677888888888887777655543 44555577777777766665543
No 100
>KOG0999|consensus
Probab=93.02 E-value=22 Score=41.47 Aligned_cols=83 Identities=22% Similarity=0.248 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH--H
Q psy15551 354 KLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQ-----LQEDAKEIE--I 426 (640)
Q Consensus 354 ~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLEaLkELnDE-----LEEnhvE~E--K 426 (640)
.|-+.-+++|..-..|+-||-.--|..-..|-|.-.+-.|+|.++-|+..+++...|+++.+- |+..+.+-+ .
T Consensus 167 RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~ 246 (772)
T KOG0999|consen 167 RLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKN 246 (772)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344455566777777777777777777788899999999999999999999999988877653 333333333 6
Q ss_pred HHHHHHHHHH
Q psy15551 427 ELKEEVEMAR 436 (640)
Q Consensus 427 eLREELD~kd 436 (640)
.|+.|++.-.
T Consensus 247 alkkEL~q~~ 256 (772)
T KOG0999|consen 247 ALKKELSQYR 256 (772)
T ss_pred HHHHHHHHhc
Confidence 7777776543
No 101
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.97 E-value=25 Score=41.87 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=29.8
Q ss_pred HHHHHHHhhcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 369 LHEQVDAALGA-EEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 369 l~~q~d~a~gA-EEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
+|.-|=.|||- .-.+|.+......-+.+|.+|+..|.++-
T Consensus 616 iKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 616 IKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566664 47788888888888888888888888765
No 102
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=92.95 E-value=15 Score=39.83 Aligned_cols=102 Identities=12% Similarity=0.202 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------HHHHHHHHH
Q psy15551 325 AHEKHEMSKLQKDIEEKKQENAEL---------IKSQEKLKQRVTELEADCADLHEQVDAALG--------AEEMVQQLS 387 (640)
Q Consensus 325 ~~~k~~~~~~~~~~e~~~~~~~~l---------~~~~~~l~~kL~~~e~~~~~l~~q~d~a~g--------AEEMVEELT 387 (640)
+..+.++...+..+..+++++.-+ ......+..++..+.+...+........-+ ..+.+..|.
T Consensus 181 ~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 260 (444)
T TIGR03017 181 AALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDALPEVIANPIIQNLK 260 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhhcChHHHHHH
Confidence 555566666666666655544211 122233334444444444444333322111 224455566
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy15551 388 VQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEI 426 (640)
Q Consensus 388 EKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EK 426 (640)
.+..+++.++.++...+.+-. .+..+..++.........
T Consensus 261 ~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~ 300 (444)
T TIGR03017 261 TDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNA 300 (444)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 666666666666665554433 555555555555554443
No 103
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.85 E-value=5.4 Score=44.10 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy15551 385 QLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIE 425 (640)
Q Consensus 385 ELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~E 425 (640)
.+..+..+++.++.++...+.+-. .+..+..++...+....
T Consensus 251 ~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~ 292 (498)
T TIGR03007 251 ELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKE 292 (498)
T ss_pred chHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Confidence 445555566666666665555544 66666777666665543
No 104
>KOG0980|consensus
Probab=92.77 E-value=30 Score=42.27 Aligned_cols=106 Identities=16% Similarity=0.111 Sum_probs=61.8
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q psy15551 369 LHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIE------IELKEEVEMARSATRE 441 (640)
Q Consensus 369 l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~E------KeLREELD~kdsqIrE 441 (640)
-+.|.+.|.+. +++...++...+.+++.+++.+..|. .-.++-..+-....+.+ -.+.+++..++-++.+
T Consensus 401 ~r~q~eka~~~---~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~ 477 (980)
T KOG0980|consen 401 SRTQLEKAQVL---VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEE 477 (980)
T ss_pred HHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34556666665 78888888888888888888888777 33333333333333333 3444555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 442 VIREKEAALESLADRELTIVKFRELVIREKEAALES 477 (640)
Q Consensus 442 L~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL 477 (640)
+.+.........++.......+|.....++.+++.+
T Consensus 478 ~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~l 513 (980)
T KOG0980|consen 478 LQRAAGRAETKTESQAKALESLRQELALLLIELEEL 513 (980)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544455555555556666666555555543
No 105
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.58 E-value=4.1 Score=38.36 Aligned_cols=63 Identities=16% Similarity=0.294 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy15551 331 MSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLEL 393 (640)
Q Consensus 331 ~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleL 393 (640)
+..+.-++-.++.+++.+....+.+.+++..+-..++.++......-.++..+.+|..+...+
T Consensus 25 lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 25 LRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555555555555555544445555555555554444
No 106
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.54 E-value=16 Score=39.42 Aligned_cols=175 Identities=16% Similarity=0.160 Sum_probs=93.0
Q ss_pred hhhhhhhhhcccccc---chhhchhhhhhhccccccchhhhhhhhhhhhccccccchh------hhhhhhhhhhcccccc
Q psy15551 228 RDLSAHEIFNNNKFD---SRLYDLSAHEIFNNKNKFDSRLRDLSAHEIFNNKNKFDSR------LRDLSAHEIFNNNKFD 298 (640)
Q Consensus 228 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 298 (640)
.+.|-|+++....-+ --||..|.+|+..+-..-...++++.++-.-+|+.-|-.- +|.+--+.+-| -|
T Consensus 47 ~~~sl~~~v~A~~~~iP~LElY~~sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~l-vK-- 123 (312)
T smart00787 47 EDCSLDQYVVAGYCTVPLLELYQFSCKELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQL-VK-- 123 (312)
T ss_pred CCCCHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHH-HH--
Confidence 456677766443333 3578888888877766666667777766655666555322 22222222211 11
Q ss_pred hhhhhhhhhhhhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15551 299 SRLRDLSAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALG 378 (640)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~l~d~~~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~g 378 (640)
+--|-.|-...|+=..+... .+.......+..++.|-+.+....+.+...+..+..+...+...+..|++.++..-.
T Consensus 124 ~~aRl~ak~~WYeWR~klle---gLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~ 200 (312)
T smart00787 124 TFARLEAKKMWYEWRMKLLE---GLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELED 200 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 11233455555555555533 334444455566666666666666666666666777777777777777666654221
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 379 A-EEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 379 A-EEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
. -+.+..+.++...+..++......+.+++
T Consensus 201 ~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~ 231 (312)
T smart00787 201 CDPTELDRAKEKLKKLLQEIMIKVKKLEELE 231 (312)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12333344444444444444444433333
No 107
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.36 E-value=2.4 Score=50.20 Aligned_cols=42 Identities=33% Similarity=0.462 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 336 KDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAAL 377 (640)
Q Consensus 336 ~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~ 377 (640)
+++.+..++...+....++|..+...+...-+.|-..++..+
T Consensus 579 ~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl 620 (717)
T PF10168_consen 579 KELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVL 620 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444554455555444444444444443
No 108
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=92.31 E-value=19 Score=39.04 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H---
Q psy15551 381 EMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEA-------A--- 449 (640)
Q Consensus 381 EMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq-------~--- 449 (640)
-+|..|..+...|+-+...+..+++.|. .--++-..|+.-+--+-..|.+.++.+...-+-++.++.+ .
T Consensus 135 ~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~ 214 (310)
T PF09755_consen 135 YLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDT 214 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchH
Confidence 4567777777777666655555555544 3333344444333334467777777777777777777663 0
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 450 ------LESLADRELTIVKFRELVIREKEAALES 477 (640)
Q Consensus 450 ------eEqLEDlE~TIsKFRELV~~LQedLeEL 477 (640)
....+....-|...|+.|..|..+|...
T Consensus 215 ~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~s 248 (310)
T PF09755_consen 215 VNVSEENDTAERLSSHIRSLRQEVSRLRQQLAAS 248 (310)
T ss_pred HhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122446666778888888888888755
No 109
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=92.20 E-value=25 Score=40.14 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q psy15551 128 AETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETL 188 (640)
Q Consensus 128 ~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaL 188 (640)
...++.++..++.+..++..+++.++..+++..... ..+..+..|+.+..||..+-
T Consensus 170 ~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~-----l~~~E~e~L~~e~~~L~n~e 225 (563)
T TIGR00634 170 WLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEAD-----LQPGEDEALEAEQQRLSNLE 225 (563)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCC-----cCCCcHHHHHHHHHHHhCHH
Confidence 334444455555555555566666665555543331 23445678888888876553
No 110
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=92.05 E-value=2.9 Score=42.69 Aligned_cols=122 Identities=21% Similarity=0.320 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 75 FKAKIMESQAGLK---RELEKLKQEKQEAVEAKE----DTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTL 147 (640)
Q Consensus 75 ~k~~~~~~~~~~~---~el~~~k~~~~e~~~~~e----~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~l 147 (640)
.|..+-++|+++- .||-.||..++++..... .+.++.+++.--++.-|+.+........|.+.+++++..|+-
T Consensus 15 LKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~ 94 (202)
T PF06818_consen 15 LKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEA 94 (202)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHH
Confidence 4455556666653 456667777777654443 678888999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhhcCCC--------CCC----CCcchHHHHHHHHHHHHHHHHHHHhhhchh
Q psy15551 148 DIELMKADIEKSCDGA--------GDG----TEVSHYQIKQLEQQNMRLRETLVRLRDLSA 196 (640)
Q Consensus 148 e~e~lk~e~e~~~~~~--------~~~----~~~~~~~~~qle~qN~rLreaLvrlRd~s~ 196 (640)
++.-|+......+.+. +++ ....+.....|..+-+|||..|.+.|.-..
T Consensus 95 El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e 155 (202)
T PF06818_consen 95 ELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRRE 155 (202)
T ss_pred HHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHH
Confidence 9999998877742110 000 001233466788999999999999998764
No 111
>KOG4593|consensus
Probab=91.92 E-value=33 Score=40.86 Aligned_cols=124 Identities=16% Similarity=0.181 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy15551 351 SQEKLKQRVTELEADCADLHEQV----DAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIE 425 (640)
Q Consensus 351 ~~~~l~~kL~~~e~~~~~l~~q~----d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~E 425 (640)
....+.++-.-+-.++.||..-. |.-..+..++...|.+...+..-|..+...--+.+ ...++..++.......+
T Consensus 392 tl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e 471 (716)
T KOG4593|consen 392 TLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLE 471 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHH
Confidence 33344445555566666666655 34445556777777777777766666666666666 55555555555444443
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 426 ------IELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAA 474 (640)
Q Consensus 426 ------KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedL 474 (640)
+.|...+......+.-....++-..+-++++...+.-.+..-..+...+
T Consensus 472 ~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~ 526 (716)
T KOG4593|consen 472 KLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQL 526 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665555555556666666666666666665555443
No 112
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=91.85 E-value=22 Score=38.61 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhch
Q psy15551 174 IKQLEQQNMRLRETLVRLRDLS 195 (640)
Q Consensus 174 ~~qle~qN~rLreaLvrlRd~s 195 (640)
++.||..|.+||.---+|+.-+
T Consensus 169 lk~LEeEN~~LR~Ea~~L~~et 190 (306)
T PF04849_consen 169 LKSLEEENEQLRSEASQLKTET 190 (306)
T ss_pred HHHHHHHHHHHHHHHHHhhHHH
Confidence 5668889999998888888555
No 113
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.72 E-value=14 Score=35.95 Aligned_cols=69 Identities=22% Similarity=0.417 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 337 DIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 337 ~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
++.+.++..+.+.+....+..++.........++....... +..+...++...+.+.+..+..++.++.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR---ELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444333 3344555555555555555555555554
No 114
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.29 E-value=13 Score=34.87 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 426 IELKEEVEMARSATREVIREKEAALESLA 454 (640)
Q Consensus 426 KeLREELD~kdsqIrEL~rRIeq~eEqLE 454 (640)
..|..++......+.++..+..-+..+|+
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66677777777777777766666666655
No 115
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.21 E-value=5.4 Score=46.52 Aligned_cols=82 Identities=21% Similarity=0.376 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 327 EKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVD 406 (640)
Q Consensus 327 ~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeD 406 (640)
-..++.++.+-++.+..+|.+|....+.++..+..+++.|+.++..++.-.+-.-.++.+-.++..|+-++.+-...++.
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~ 499 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEE 499 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777888888888888888888888888888888888887766666666666666666666666666666666
Q ss_pred HH
Q psy15551 407 LE 408 (640)
Q Consensus 407 LE 408 (640)
|+
T Consensus 500 L~ 501 (652)
T COG2433 500 LE 501 (652)
T ss_pred HH
Confidence 55
No 116
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.80 E-value=20 Score=36.29 Aligned_cols=63 Identities=21% Similarity=0.339 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy15551 355 LKQRVTELEADCADLHEQVDAALG-----AEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQL 417 (640)
Q Consensus 355 l~~kL~~~e~~~~~l~~q~d~a~g-----AEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDEL 417 (640)
++..+..+-+..+.|+.+|+.++. ....+..+..+...+..++..++..++.+. .+......+
T Consensus 25 ~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l 93 (302)
T PF10186_consen 25 LRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERL 93 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555 334455555555555555555555555544 443333333
No 117
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=90.73 E-value=55 Score=41.14 Aligned_cols=146 Identities=12% Similarity=0.134 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH---------HHHHHHHH
Q psy15551 331 MSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLEL---------EDLVSKQA 401 (640)
Q Consensus 331 ~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleL---------EEKIeELE 401 (640)
-.+|-+.+....+....+...+...++.+.........++||+...-|.--.=+-|-.+...| ..+|.++.
T Consensus 267 N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L~~Q~~~LP~~~~~~~l~~~IAdlR 346 (1109)
T PRK10929 267 NRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGEALRAQVARLPEMPKPQQLDTEMAQLR 346 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhCCCCcccchhHHHHHHHH
Confidence 345556666666677777777888888888888888889999987666555445555544443 33344333
Q ss_pred HHHHHHHH-HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 402 EEIVDLEA-LQVVSDQLQEDA--------KEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKE 472 (640)
Q Consensus 402 etIeDLEa-LkELnDELEEnh--------vE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQe 472 (640)
-..=++++ ..++.. +.... -+..+.|..-++.+..-+..+.+....+-..+..++..-.+..+.+.++++
T Consensus 347 l~~f~~~q~~~~l~~-i~~~~~~~~~~~t~~~~~~l~~ll~~rr~LL~~L~~~~~~~l~~l~~L~~~q~QL~~~~~~l~~ 425 (1109)
T PRK10929 347 VQRLRYEDLLNKQPQ-LRQIRQADGQPLTAEQNRILDAQLRTQRELLNSLLSGGDTLILELTKLKVANSQLEDALKEVNE 425 (1109)
T ss_pred HHHHHHHHHHHHhhh-hHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333331 111110 11110 111244555556677777788888888888888888999999999999998
Q ss_pred HHHhh
Q psy15551 473 AALES 477 (640)
Q Consensus 473 dLeEL 477 (640)
-+.+.
T Consensus 426 ~L~~~ 430 (1109)
T PRK10929 426 ATHRY 430 (1109)
T ss_pred HHHHh
Confidence 88765
No 118
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.50 E-value=4.7 Score=41.04 Aligned_cols=78 Identities=10% Similarity=0.230 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEI 404 (640)
Q Consensus 325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetI 404 (640)
.+.+..+.++++++.+.+.+++++..+ ..++..+ +++.++. +...+.+|..+|..|.+++..++.++
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~---~~~~~~~-------l~~~~~~---~~~~~~~L~~~n~~L~~~l~~~~~~~ 155 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNT---WNQRTAE-------MQQKVAQ---SDSVINGLKEENQKLKNQLIVAQKKV 155 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHH-------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777665544 2223333 3333332 34446668888888888888888888
Q ss_pred HHHH-HHHHHHH
Q psy15551 405 VDLE-ALQVVSD 415 (640)
Q Consensus 405 eDLE-aLkELnD 415 (640)
+.++ .+..+.+
T Consensus 156 ~~l~~~~~~~~~ 167 (206)
T PRK10884 156 DAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHH
Confidence 8877 4444443
No 119
>KOG0612|consensus
Probab=90.45 E-value=59 Score=41.10 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 451 ESLADRELTIVKFRELVIREKEAAL 475 (640)
Q Consensus 451 EqLEDlE~TIsKFRELV~~LQedLe 475 (640)
+..-.+...-.+....|..|+..|+
T Consensus 742 ~~~~~l~r~~~~~~~~vl~Lq~~LE 766 (1317)
T KOG0612|consen 742 EKLNELRRSKDQLITEVLKLQSMLE 766 (1317)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHH
Confidence 3444445555556666666666666
No 120
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.43 E-value=33 Score=38.08 Aligned_cols=35 Identities=9% Similarity=0.174 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q psy15551 122 EMAEERAETLQVELDLAKEKIEELTLDIELMKADI 156 (640)
Q Consensus 122 emaee~~e~l~~el~~~k~k~eel~le~e~lk~e~ 156 (640)
..+....+-++.++..++.++++.+..+.-.+.+.
T Consensus 157 ~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~ 191 (498)
T TIGR03007 157 QDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQEN 191 (498)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44556677788888888888888888888887554
No 121
>KOG0978|consensus
Probab=90.38 E-value=47 Score=39.78 Aligned_cols=104 Identities=15% Similarity=0.122 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 356 KQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEM 434 (640)
Q Consensus 356 ~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~ 434 (640)
+.....++..+..|++|+..--+. +..+..+...+...++.++..+.++. .+..+ +.+++.
T Consensus 516 ~~~~~~~~~~i~~leeq~~~lt~~---~~~l~~el~~~~~~le~~kk~~~e~~~~~~~L---------------q~~~ek 577 (698)
T KOG0978|consen 516 KASVDKLELKIGKLEEQERGLTSN---ESKLIKELTTLTQSLEMLKKKAQEAKQSLEDL---------------QIELEK 577 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHH
Confidence 333344455555555555533322 22233333333444444444444444 33333 333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 435 ARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALES 477 (640)
Q Consensus 435 kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL 477 (640)
-.+.+..++.+..+....+++....-.+..+....+...+...
T Consensus 578 ~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 578 SEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455555555555555555555555555556665555543
No 122
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=90.21 E-value=42 Score=39.03 Aligned_cols=74 Identities=19% Similarity=0.309 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy15551 350 KSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEI 424 (640)
Q Consensus 350 ~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~ 424 (640)
+...++..++..++..++++..++..+-+- +.+..+.++...++.++.+++..+..+. .+..+..+++....+.
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~-e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSE-EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556667778888888888888877654 4677777777777777777777777776 6666666655544443
No 123
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=90.13 E-value=31 Score=37.32 Aligned_cols=147 Identities=17% Similarity=0.236 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q psy15551 331 MSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDL--- 407 (640)
Q Consensus 331 ~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDL--- 407 (640)
.+.+...-.++..++.+|......+-.++.++-..+..+.+..+-.-+.-.-+..+......|+-...+..-+.+.-
T Consensus 57 ~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~l 136 (294)
T COG1340 57 AQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEEREL 136 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 33344444555566666777777777777888888888888888442222224445555555554444322221111
Q ss_pred -HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 408 -EALQVVSDQLQEDAKEIE-----IELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALES 477 (640)
Q Consensus 408 -EaLkELnDELEEnhvE~E-----KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL 477 (640)
..+.++..+|+.-....+ .+|..+++......+++..+|..+...+..+-..+.+.-.....+.....++
T Consensus 137 vq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~ 212 (294)
T COG1340 137 VQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADEL 212 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123334444443333222 5555666666666666666666666666655555555555555555444443
No 124
>KOG0963|consensus
Probab=89.60 E-value=50 Score=38.97 Aligned_cols=43 Identities=28% Similarity=0.428 Sum_probs=27.2
Q ss_pred hhHHHHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcC
Q psy15551 119 LDKEMAEERAE--TLQVELDLAKEKIEELTLDIELMKADIEKSCD 161 (640)
Q Consensus 119 ldkemaee~~e--~l~~el~~~k~k~eel~le~e~lk~e~e~~~~ 161 (640)
.|.|.+-.-++ ..-.+|+-++.+|..|+.+++.|+........
T Consensus 226 ~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~ 270 (629)
T KOG0963|consen 226 YDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANS 270 (629)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 35555544443 34557777777788888888888777665433
No 125
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=89.60 E-value=71 Score=40.74 Aligned_cols=67 Identities=18% Similarity=0.182 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhh
Q psy15551 124 AEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLR 192 (640)
Q Consensus 124 aee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvrlR 192 (640)
|+..+.....+++.+.+++....-.+.-.+.+....|.+-+-+ .+...+-++..--..++.+|..++
T Consensus 798 A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l~~aaa~l~L~--a~~~~l~~~~~aL~~y~~~l~~l~ 864 (1353)
T TIGR02680 798 AERQAESAERELARAARKAAAAAAAWKQARRELERDAADLDLP--TDPDALEAVGLALKRFGDHLHTLE 864 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CChhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666666666666666666555555442222 233333344444444444444443
No 126
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=89.22 E-value=8.9 Score=39.76 Aligned_cols=94 Identities=24% Similarity=0.323 Sum_probs=68.8
Q ss_pred hHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHHHHHH
Q psy15551 55 YREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE----DTADLVETLEMMTLDKEMAEERAET 130 (640)
Q Consensus 55 d~~k~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e----~~~d~~~~lem~tldkemaee~~e~ 130 (640)
-|.|+.+|++++..+-+-.++-..-.....++..|...|.+|....++..- |+..++..+--+.=+++=..+.+..
T Consensus 6 ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r 85 (230)
T PF10146_consen 6 IRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQR 85 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466888899988888887777777778888888888888888877766553 6666666666666666666677767
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy15551 131 LQVELDLAKEKIEELTLD 148 (640)
Q Consensus 131 l~~el~~~k~k~eel~le 148 (640)
+..|+.-+|+.|.++..+
T Consensus 86 ~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 86 LYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777766666666666554
No 127
>PF13514 AAA_27: AAA domain
Probab=89.08 E-value=68 Score=39.79 Aligned_cols=81 Identities=25% Similarity=0.334 Sum_probs=50.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHh
Q psy15551 112 ETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRL 191 (640)
Q Consensus 112 ~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvrl 191 (640)
..|....-.-.-...+.+.++.+++.++.+++.+...+...+.++...+..+|.. +...+..+..+..+.++..-++
T Consensus 787 ~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~~~---~~e~l~~~~~~~~~~~~l~~~~ 863 (1111)
T PF13514_consen 787 EALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAELAELLEQAGVE---DEEELREAEERAEERRELREEL 863 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444566777888888888888888888888888888877654433 3344555555555555555555
Q ss_pred hhch
Q psy15551 192 RDLS 195 (640)
Q Consensus 192 Rd~s 195 (640)
.++.
T Consensus 864 ~~~~ 867 (1111)
T PF13514_consen 864 EDLE 867 (1111)
T ss_pred HHHH
Confidence 5544
No 128
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.84 E-value=36 Score=36.32 Aligned_cols=145 Identities=12% Similarity=0.147 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHH--
Q psy15551 325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAE-- 402 (640)
Q Consensus 325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEe-- 402 (640)
.+...+.+.++++|+.+...+.++......++.+.++..+.+..|+.+++.. =+.+.+++.-|.+++..+..
T Consensus 41 ~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~------~~~I~~r~~~l~~raRAmq~nG 114 (265)
T COG3883 41 SELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL------KENIVERQELLKKRARAMQVNG 114 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHcC
Confidence 3444556667777777777777777777777777777777777777776643 34566677777777665432
Q ss_pred -----------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 403 -----------------EIVDLE---ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVK 462 (640)
Q Consensus 403 -----------------tIeDLE---aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsK 462 (640)
-|..+. .+-+.+..+-+++.+-+..|..--......+.++..-...++..+.+++.....
T Consensus 115 ~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e 194 (265)
T COG3883 115 TATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAE 194 (265)
T ss_pred ChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 222233334444444444444444444444444444444455555555555555
Q ss_pred HHHHHHHHHHHHH
Q psy15551 463 FRELVIREKEAAL 475 (640)
Q Consensus 463 FRELV~~LQedLe 475 (640)
...++..+..+..
T Consensus 195 ~~~l~~~~aa~~a 207 (265)
T COG3883 195 KNALIAALAAKEA 207 (265)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554444
No 129
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=88.54 E-value=32 Score=35.38 Aligned_cols=152 Identities=19% Similarity=0.251 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcH---HHHHHHHHHHHHHHHHHHHHH
Q psy15551 325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAA-LGA---EEMVQQLSVQKLELEDLVSKQ 400 (640)
Q Consensus 325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a-~gA---EEMVEELTEKNleLEEKIeEL 400 (640)
+=.|.++...+.++..+-.++-.|......+...+...+..+.+|+..+..- +.. +..+........-|.+++..+
T Consensus 13 sLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~l 92 (202)
T PF06818_consen 13 SLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQL 92 (202)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhh
Confidence 4468888889999999999999999999999999999999999998766431 111 122222233333344444444
Q ss_pred HHHHHHHH-HHHHH------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 401 AEEIVDLE-ALQVV------------SDQLQE---DAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFR 464 (640)
Q Consensus 401 EetIeDLE-aLkEL------------nDELEE---nhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFR 464 (640)
+..+..|. .+... .++-.. ........|+.+++.+...|....++.+.+....+.=-.+=..=+
T Consensus 93 e~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEK 172 (202)
T PF06818_consen 93 EAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEK 172 (202)
T ss_pred HHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44444444 33332 000000 001123678888888888888888888877777776556667778
Q ss_pred HHHHHHHHHHHh
Q psy15551 465 ELVIREKEAALE 476 (640)
Q Consensus 465 ELV~~LQedLeE 476 (640)
+.|-..|.+|+.
T Consensus 173 ekVi~YQkQLQ~ 184 (202)
T PF06818_consen 173 EKVIRYQKQLQQ 184 (202)
T ss_pred HHHHHHHHHHHH
Confidence 889999998885
No 130
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=88.46 E-value=59 Score=38.34 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhh
Q psy15551 128 AETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLR 192 (640)
Q Consensus 128 ~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvrlR 192 (640)
+.+|..|.+....+|.+|+..|..|+..+..... ..++.+.+-.-.+|...-..|+.-+-.|.
T Consensus 38 v~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~--~~~pa~pse~E~~Lq~E~~~L~kElE~L~ 100 (617)
T PF15070_consen 38 VRTLKEEKEHDISRVQELERSLSELKNQMAEPPP--PEPPAGPSEVEQQLQAEAEHLRKELESLE 100 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC--ccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677777778899999999999888776432 23333344444677777777766554443
No 131
>KOG0018|consensus
Probab=87.99 E-value=82 Score=39.44 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=34.3
Q ss_pred hHHhhhhhhhh---c---chHHHHHHHhHhHhhc--CCCCCCCCCCchHHHHHHHHHHhh
Q psy15551 487 KFRELNSLDEK---V---STENIEKCVTYFNTFY--PVLFPDTKFSHVGHLLMDYVKILS 538 (640)
Q Consensus 487 ~~sasKA~~k~---I---EaeqA~~hl~~l~~FL--PdsF~~~GGD~DsVl~lLlf~RLa 538 (640)
+++.+++..+. | .-.-|..|+.|++..- |.+|. +.|+|.+-....++.
T Consensus 520 eiAvt~~Lgk~~daIiVdte~ta~~CI~ylKeqr~~~~TFl----Pld~i~v~~~~e~lr 575 (1141)
T KOG0018|consen 520 EIAVTVVLGKNMDAIIVDTEATARDCIQYLKEQRLEPMTFL----PLDSIRVKPVNEKLR 575 (1141)
T ss_pred HHHHHHHHhcccceEEeccHHHHHHHHHHHHHhccCCcccc----chhhhhcCccccccc
Confidence 36777777763 3 3457899999999887 77998 578876665555544
No 132
>PRK11281 hypothetical protein; Provisional
Probab=87.70 E-value=88 Score=39.44 Aligned_cols=81 Identities=23% Similarity=0.334 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHH
Q psy15551 103 AKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNM 182 (640)
Q Consensus 103 ~~e~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~ 182 (640)
.+.-++++..++.... +.+-..++++.++..+..+-.++.+..-+++-++.+.+.. ...........+||++-.
T Consensus 58 ~k~~~~~l~~tL~~L~-qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~-----~~~~~~~~Sl~qLEq~L~ 131 (1113)
T PRK11281 58 DKLVQQDLEQTLALLD-KIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEE-----TRETLSTLSLRQLESRLA 131 (1113)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcccccc-----ccccccccCHHHHHHHHH
Confidence 3334555666655432 1233456777888888888888888888888777532221 111123333366777766
Q ss_pred HHHHHHH
Q psy15551 183 RLRETLV 189 (640)
Q Consensus 183 rLreaLv 189 (640)
.+...|-
T Consensus 132 q~~~~Lq 138 (1113)
T PRK11281 132 QTLDQLQ 138 (1113)
T ss_pred HHHHHHH
Confidence 5555444
No 133
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.58 E-value=43 Score=35.75 Aligned_cols=58 Identities=14% Similarity=0.260 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy15551 359 VTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQE 419 (640)
Q Consensus 359 L~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEE 419 (640)
+..++.+|.+|..||+...+- +.++.+++..++.+|..|+..|.+++ .+.+-++-|..
T Consensus 47 ~~~~q~ei~~L~~qi~~~~~k---~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 47 KKNIQNEIESLDNQIEEIQSK---IDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443322 44445555555555555555555555 44444444443
No 134
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.48 E-value=29 Score=33.69 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 383 VQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 383 VEELTEKNleLEEKIeELEetIeDLE 408 (640)
+..++..+..|...+..++..|.+|+
T Consensus 75 L~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 75 LDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 135
>KOG0243|consensus
Probab=87.32 E-value=65 Score=40.19 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15551 331 MSKLQKDIEEKKQENAE 347 (640)
Q Consensus 331 ~~~~~~~~e~~~~~~~~ 347 (640)
++.+-.+|+.+++.+..
T Consensus 406 lKd~~~EIerLK~dl~A 422 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAA 422 (1041)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555554443
No 136
>KOG2129|consensus
Probab=87.30 E-value=59 Score=37.03 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHHHHH
Q psy15551 2 KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKA 41 (640)
Q Consensus 2 ~~e~~~l~~kl~~~~~k~~ek~~~~~~~~~ql~q~~~~k~ 41 (640)
+.++++++.|-.+|...-+-.+.--..+..+-+|-+||-.
T Consensus 63 k~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfis 102 (552)
T KOG2129|consen 63 KGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFIS 102 (552)
T ss_pred hhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHH
Confidence 4566666666666655555544444566667788888876
No 137
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=87.17 E-value=23 Score=42.49 Aligned_cols=57 Identities=35% Similarity=0.516 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHH------HHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHH-HHHHHH
Q psy15551 126 ERAETLQVELDLAKEKIE------ELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNM-RLRETL 188 (640)
Q Consensus 126 e~~e~l~~el~~~k~k~e------el~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~-rLreaL 188 (640)
++.|.|+.++. .+|+ +|.--+|.||.|+.+ ++.+++..+.--|..|+||.. +|-+|+
T Consensus 649 ~KIe~L~~eIk---kkIe~av~ss~LK~k~E~Lk~Evak---a~~~pd~~~k~kieal~~qik~~~~~a~ 712 (762)
T PLN03229 649 EKIESLNEEIN---KKIERVIRSSDLKSKIELLKLEVAK---ASKTPDVTEKEKIEALEQQIKQKIAEAL 712 (762)
T ss_pred HHHHHHHHHHH---HHHHHHhcchhHHHHHHHHHHHHHh---cCCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 46666666542 2222 233444555555544 445555566788888999864 344444
No 138
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=87.02 E-value=65 Score=37.24 Aligned_cols=87 Identities=21% Similarity=0.253 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 333 KLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAAL-----GAEEMVQQLSVQKLELEDLVSKQAEEIVDL 407 (640)
Q Consensus 333 ~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~-----gAEEMVEELTEKNleLEEKIeELEetIeDL 407 (640)
+|++++..++.-.+||....+++.-+|+.+-+.|..++|--..-+ ..+.|=.+|.+-|+.....+-.++..|.-.
T Consensus 484 ~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~ 563 (622)
T COG5185 484 TLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQST 563 (622)
T ss_pred eHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHHH
Confidence 478889999999999999999999999999999998887543222 222333444444444444454444444444
Q ss_pred H-HHHHHHHHHHH
Q psy15551 408 E-ALQVVSDQLQE 419 (640)
Q Consensus 408 E-aLkELnDELEE 419 (640)
+ .+.++.-.+++
T Consensus 564 ~i~ld~~~~~~n~ 576 (622)
T COG5185 564 EIKLDELKVDLNR 576 (622)
T ss_pred HhhHHHHHHHHHH
Confidence 4 44444433333
No 139
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=86.99 E-value=45 Score=37.01 Aligned_cols=25 Identities=28% Similarity=0.187 Sum_probs=15.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhh
Q psy15551 169 VSHYQIKQLEQQNMRLRETLVRLRD 193 (640)
Q Consensus 169 ~~~~~~~qle~qN~rLreaLvrlRd 193 (640)
....+..+++.+...++..+.||+=
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~rL~a 118 (457)
T TIGR01000 94 NEENQKQLLEQQLDNLKDQKKSLDT 118 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777766666643
No 140
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=86.85 E-value=40 Score=34.59 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy15551 441 EVIREKEAALESLADRELTI-VKFRELVIREKEAAL 475 (640)
Q Consensus 441 EL~rRIeq~eEqLEDlE~TI-sKFRELV~~LQedLe 475 (640)
+-..|++.+...+.+...+. .+||..+.-++.+..
T Consensus 128 eR~~Rl~~L~~~l~~~dv~~~ek~r~vlea~~~E~~ 163 (251)
T PF11932_consen 128 ERQERLARLRAMLDDADVSLAEKFRRVLEAYQIEME 163 (251)
T ss_pred HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHH
Confidence 55666777777777654433 478888887777765
No 141
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=86.58 E-value=51 Score=35.55 Aligned_cols=72 Identities=22% Similarity=0.350 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 333 KLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDL 407 (640)
Q Consensus 333 ~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDL 407 (640)
..+..+.+....++.|.+.++....+...++..+......++.| ..++.-|+..+..=.+.+..++....-+
T Consensus 239 ~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA---~~Li~~L~~E~~RW~~~~~~l~~~~~~l 310 (344)
T PF12777_consen 239 EKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERA---EKLISGLSGEKERWSEQIEELEEQLKNL 310 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCHHHHHCCHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH---HHHHhhhcchhhhHHHHHHHHHHHhccc
Confidence 33444444444444444444444444444444444444444443 3345555555555555555555544443
No 142
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=86.56 E-value=29 Score=32.63 Aligned_cols=24 Identities=25% Similarity=0.571 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 328 KHEMSKLQKDIEEKKQENAELIKS 351 (640)
Q Consensus 328 k~~~~~~~~~~e~~~~~~~~l~~~ 351 (640)
.+.+..|+..||..+....+|++.
T Consensus 15 ~n~La~Le~slE~~K~S~~eL~kq 38 (107)
T PF09304_consen 15 QNRLASLERSLEDEKTSQGELAKQ 38 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHh
Confidence 334455555555555444444433
No 143
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=86.42 E-value=86 Score=38.03 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=10.0
Q ss_pred hhhHHHHHHHHHHHhhh
Q psy15551 582 TENIEKCVTYFNTFYPV 598 (640)
Q Consensus 582 ~E~FEKI~~YFn~IFsv 598 (640)
.+.++++...+..+=+.
T Consensus 856 ~e~l~~l~~~l~~i~~~ 872 (908)
T COG0419 856 EERLEKLAEILEELLSD 872 (908)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34566666666665544
No 144
>PLN02939 transferase, transferring glycosyl groups
Probab=86.40 E-value=97 Score=38.59 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 355 LKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQV 412 (640)
Q Consensus 355 l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLEaLkE 412 (640)
+-.+++.++.-..-..-|+|.|.- .-++|.+|..+|..|++.+++-...+-
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (977)
T PLN02939 298 WWEKVENLQDLLDRATNQVEKAAL-------VLDQNQDLRDKVDKLEASLKEANVSKF 348 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HhccchHHHHHHHHHHHHHHHhhHhhh
Confidence 555666666666666677766643 367899999999999988887764433
No 145
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=86.26 E-value=39 Score=33.87 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 379 AEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKE 447 (640)
Q Consensus 379 AEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIe 447 (640)
++.....+..++..|+.++.+|+..+.++. ....+....++.....++...+|++++......+..+++
T Consensus 118 ~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 118 AEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666777777777777777777776 555555555555556667788888888877776665554
No 146
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.06 E-value=40 Score=40.29 Aligned_cols=102 Identities=19% Similarity=0.204 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---HHHHHH
Q psy15551 350 KSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQE---DAKEIE 425 (640)
Q Consensus 350 ~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEE---nhvE~E 425 (640)
...+.++.++..+....+ .|++..--+.+.++.|++.-..|.+++++..+.-+.|. .++.+-..+.. .-...|
T Consensus 558 ~ar~ei~~rv~~Lk~~~e---~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AE 634 (717)
T PF10168_consen 558 LAREEIQRRVKLLKQQKE---QQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAE 634 (717)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHH
Confidence 344455555555544433 45555556666777888888888888888888877777 56555554433 123556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 426 IELKEEVEMARSATREVIREKEAALESLA 454 (640)
Q Consensus 426 KeLREELD~kdsqIrEL~rRIeq~eEqLE 454 (640)
+++.+|++....+++.+..++++....+.
T Consensus 635 r~~~~EL~~~~~~l~~l~~si~~lk~k~~ 663 (717)
T PF10168_consen 635 REFKKELERMKDQLQDLKASIEQLKKKLD 663 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877777766666666554444
No 147
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.01 E-value=8.2 Score=38.22 Aligned_cols=12 Identities=33% Similarity=0.224 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHH
Q psy15551 325 AHEKHEMSKLQK 336 (640)
Q Consensus 325 ~~~k~~~~~~~~ 336 (640)
+..+++...++.
T Consensus 34 ~~l~~~~~~l~~ 45 (194)
T PF08614_consen 34 SLLKAENEQLQP 45 (194)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 444444444443
No 148
>KOG0964|consensus
Probab=85.95 E-value=1e+02 Score=38.47 Aligned_cols=117 Identities=21% Similarity=0.346 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHHHHHHHHHHHhhhhhhh---hHHHH--hhHHHHHHHHHhHHHHHH
Q psy15551 3 AEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFR---YREKT--RDLDEMKIQLDQSAEFKA 77 (640)
Q Consensus 3 ~e~~~l~~kl~~~~~k~~ek~~~~~~~~~ql~q~~~~k~k~~e~~~~~~~~~---d~~k~--~~l~~~~~~~~~~~~~k~ 77 (640)
.+|.+-+.+|.+.+-||..=..+-.-.+.+|-++..=+.-++--|+..|-|- +|+|. .++++++.-+....
T Consensus 335 ~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~k---- 410 (1200)
T KOG0964|consen 335 DKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTK---- 410 (1200)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhh----
Confidence 4566677777777788877666667777788777777777777777777773 33332 23333333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHhhhhHHHHHH
Q psy15551 78 KIMESQAGLKRELEKLKQEKQEAVEAKEDTAD-L-VETLEMMTLDKEMAEE 126 (640)
Q Consensus 78 ~~~~~~~~~~~el~~~k~~~~e~~~~~e~~~d-~-~~~lem~tldkemaee 126 (640)
+.-+.+|.++..++.++++.-+....+.. + .-.-.|-++|.+.++.
T Consensus 411 ---e~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~ 458 (1200)
T KOG0964|consen 411 ---EQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTEL 458 (1200)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHH
Confidence 33344566666666666554443332111 1 1122355566555543
No 149
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=85.72 E-value=50 Score=36.43 Aligned_cols=56 Identities=14% Similarity=0.322 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhh
Q psy15551 126 ERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRD 193 (640)
Q Consensus 126 e~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvrlRd 193 (640)
++...+..-+......+.+++-+++..|.+|++.+.. ++++ +|. .++|.||.+||.
T Consensus 287 ~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~-mtD~--sPl---------v~IKqAl~kLk~ 342 (359)
T PF10498_consen 287 EKYKQASEGVSERTRELAEISEELEQVKQEMEERGSS-MTDG--SPL---------VKIKQALTKLKQ 342 (359)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCC--CHH---------HHHHHHHHHHHH
Confidence 4455555666666667778888889999999886555 3332 332 356777777774
No 150
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=85.67 E-value=62 Score=35.72 Aligned_cols=109 Identities=22% Similarity=0.404 Sum_probs=63.3
Q ss_pred hhhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH----HHhhcH
Q psy15551 308 EIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQE----KLKQRVTELEADCADLHEQV----DAALGA 379 (640)
Q Consensus 308 ~~~~~~~~~~~~l~d~~~~~k~~~~~~~~~~e~~~~~~~~l~~~~~----~l~~kL~~~e~~~~~l~~q~----d~a~gA 379 (640)
++|.+.+-+. .|-++-+..+..+..+..+|. +....+. .-...+..+...+.+|-.++ .-|-..
T Consensus 12 ~lfp~e~SL~-~ld~~i~~l~~~i~~ld~eI~-------~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~s 83 (383)
T PF04100_consen 12 ELFPDEQSLS-NLDELIAKLRKEIRELDEEIK-------ELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEES 83 (383)
T ss_pred HhCCChHHHH-hHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554442 233333444444444444443 3333332 22233455555555555555 347778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 380 EEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEI 424 (640)
Q Consensus 380 EEMVEELTEKNleLEEKIeELEetIeDLEaLkELnDELEEnhvE~ 424 (640)
|.||.++|.-+..|---=.-|..+|.-|..|+-+-.-+.....-.
T Consensus 84 E~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~ 128 (383)
T PF04100_consen 84 EQMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELA 128 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888887766666665544433
No 151
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=85.62 E-value=37 Score=33.03 Aligned_cols=160 Identities=21% Similarity=0.232 Sum_probs=101.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHHHHHHHHHHHhhhhhhhhHHHHhhHHHHHHHHHhHHHHHHHHHHH
Q psy15551 3 AEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMES 82 (640)
Q Consensus 3 ~e~~~l~~kl~~~~~k~~ek~~~~~~~~~ql~q~~~~k~k~~e~~~~~~~~~d~~k~~~l~~~~~~~~~~~~~k~~~~~~ 82 (640)
.+|.+++-++-+++.+... +..||.+..+.- +--.+-|++.++++..+ +..+|.+.
T Consensus 6 ~~i~~~Rl~~~~lk~~l~k-------~~~ql~~ke~lg--------------e~L~~iDFeqLkien~~---l~~kIeER 61 (177)
T PF13870_consen 6 NEISKLRLKNITLKHQLAK-------LEEQLRQKEELG--------------EGLHLIDFEQLKIENQQ---LNEKIEER 61 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhc--------------CcccHHHHHHHHHHHHH---HHHHHHHH
Confidence 4667777777777766554 444444444332 34578899999999988 78888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCC
Q psy15551 83 QAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDG 162 (640)
Q Consensus 83 ~~~~~~el~~~k~~~~e~~~~~e~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~ 162 (640)
-.+|. ++|......+ .-++-..+.+-+++-+...........+..+..+++.+..+..+..-++..+......
T Consensus 62 n~eL~----~Lk~~~~~~v---~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~ 134 (177)
T PF13870_consen 62 NKELL----KLKKKIGKTV---QILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQ 134 (177)
T ss_pred HHHHH----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65544 3333322222 2344445566666666666777777777777888888888888888877777666433
Q ss_pred CCCCCCcchH-HHHHHHHHHHHHHHHHHHhhh
Q psy15551 163 AGDGTEVSHY-QIKQLEQQNMRLRETLVRLRD 193 (640)
Q Consensus 163 ~~~~~~~~~~-~~~qle~qN~rLreaLvrlRd 193 (640)
+|.-+-|+-. .|.........|+..+..|+.
T Consensus 135 ~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~r 166 (177)
T PF13870_consen 135 GGLLGVPALLRDYDKTKEEVEELRKEIKELER 166 (177)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443333332 466666666777777776664
No 152
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=85.34 E-value=45 Score=33.77 Aligned_cols=81 Identities=16% Similarity=0.270 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 326 HEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIV 405 (640)
Q Consensus 326 ~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIe 405 (640)
..-.++.-|...+...+...-.+....-+....+..+...+..|+.-+++--.++ -++|+.+...++.++.+-...|.
T Consensus 65 ~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~e--ReeL~~kL~~~~~~l~~~~~ki~ 142 (194)
T PF15619_consen 65 RHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAE--REELQRKLSQLEQKLQEKEKKIQ 142 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666555555555555555555566666666666666655433333 46666666666666666666666
Q ss_pred HHH
Q psy15551 406 DLE 408 (640)
Q Consensus 406 DLE 408 (640)
.|+
T Consensus 143 ~Le 145 (194)
T PF15619_consen 143 ELE 145 (194)
T ss_pred HHH
Confidence 666
No 153
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=85.28 E-value=58 Score=35.04 Aligned_cols=78 Identities=22% Similarity=0.336 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHHHHHHHHHHHhhhhhhhhHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy15551 7 DLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGL 86 (640)
Q Consensus 7 ~l~~kl~~~~~k~~ek~~~~~~~~~ql~q~~~~k~k~~e~~~~~~~~~d~~k~~~l~~~~~~~~~~~~~k~~~~~~~~~~ 86 (640)
+..+|++++-.+|.+=+.+...+..++..+. .. .-.-.++.+.+..++......|.|+..+=.+|
T Consensus 19 ~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~----------Kk-----~~~l~kek~~l~~E~~k~~~~k~KLE~LCREL 83 (309)
T PF09728_consen 19 SPEEKLEALCKKYAELLEEMKRLQKQLKKLQ----------KK-----QEQLQKEKDQLQSELSKAILAKSKLESLCREL 83 (309)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467999999999995555555444443332 11 22356778888899999999999998888888
Q ss_pred HHHHHHHHHHHHH
Q psy15551 87 KRELEKLKQEKQE 99 (640)
Q Consensus 87 ~~el~~~k~~~~e 99 (640)
|+.-..++-+...
T Consensus 84 Qk~Nk~lkeE~~~ 96 (309)
T PF09728_consen 84 QKQNKKLKEESKR 96 (309)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777655443
No 154
>KOG0979|consensus
Probab=84.96 E-value=1.1e+02 Score=38.09 Aligned_cols=103 Identities=16% Similarity=0.175 Sum_probs=70.7
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 374 DAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALES 452 (640)
Q Consensus 374 d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEq 452 (640)
++--++-..+..|.+.....+.++++|+..+.++. .+..+..++.+..... ...-+.+...+..+.+.....+.+...
T Consensus 255 ~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~-~~~~ek~~~~~~~v~~~~~~le~lk~~ 333 (1072)
T KOG0979|consen 255 QAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKV-QEKFEKLKEIEDEVEEKKNKLESLKKA 333 (1072)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556677777777777788888888777777 7777777777654432 334445555555666666666666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 453 LADRELTIVKFRELVIREKEAALES 477 (640)
Q Consensus 453 LEDlE~TIsKFRELV~~LQedLeEL 477 (640)
-.+.+.+|.+.++-+..+|..++..
T Consensus 334 ~~~rq~~i~~~~k~i~~~q~el~~~ 358 (1072)
T KOG0979|consen 334 AEKRQKRIEKAKKMILDAQAELQET 358 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 7777777888888888888887754
No 155
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=84.58 E-value=26 Score=37.63 Aligned_cols=28 Identities=18% Similarity=0.031 Sum_probs=20.6
Q ss_pred CccccchhhHHhhhhHHHhcchHHHHHHH
Q psy15551 610 GSLLMDYVKILSTACDCLQTDSKIIQALI 638 (640)
Q Consensus 610 ~L~LtD~~dvL~SGIEIiA~~~~~~~~~~ 638 (640)
.+....+. --+.|+-.+.||.+++-+..
T Consensus 281 ~~~~~~~~-~WT~AlK~lLtnlKw~l~~~ 308 (314)
T PF04111_consen 281 KLQFNSEE-EWTKALKYLLTNLKWLLAWV 308 (314)
T ss_dssp -STTS-HH-HHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCChh-HHHHHHHHHHHHHHHHHHHH
Confidence 44445666 48999999999999987764
No 156
>PRK09343 prefoldin subunit beta; Provisional
Probab=84.56 E-value=27 Score=32.59 Aligned_cols=92 Identities=20% Similarity=0.252 Sum_probs=52.9
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q psy15551 369 LHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQE--------DAKEIEIELKEEVEMARSATR 440 (640)
Q Consensus 369 l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLEaLkELnDELEE--------nhvE~EKeLREELD~kdsqIr 440 (640)
+..++...-.+...+..+..+...++..+.+.+.++++|+.|.+=..-+.- ...+....+.+.+++.+..|.
T Consensus 9 ~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik 88 (121)
T PRK09343 9 VQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSR 88 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555556667777777788888888888888766533332221 122333566666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15551 441 EVIREKEAALESLADRELTI 460 (640)
Q Consensus 441 EL~rRIeq~eEqLEDlE~TI 460 (640)
.+..+.......+.+.+..|
T Consensus 89 ~lekq~~~l~~~l~e~q~~l 108 (121)
T PRK09343 89 TLEKQEKKLREKLKELQAKI 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554443
No 157
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.55 E-value=20 Score=36.62 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 353 EKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 353 ~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
-.+..++..++.++++|+.+++.+- .+...+..++++++...+..+.+|+
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~------~~~~~~~~~l~~~~~~~~~~~~~L~ 138 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNID------NTWNQRTAEMQQKVAQSDSVINGLK 138 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477888888888888887777643 3344555555555555555554433
No 158
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=84.39 E-value=83 Score=36.08 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhcHHHHHHHHHHH
Q psy15551 325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEA------DCADLHEQVDAALGAEEMVQQLSVQ 389 (640)
Q Consensus 325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~------~~~~l~~q~d~a~gAEEMVEELTEK 389 (640)
....++.+.+.+++.++.....++....+.++.++.++++ ..++|.++++...-++...+.+..-
T Consensus 164 ~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e~i~~~~~~~ 234 (563)
T TIGR00634 164 RELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLRELSQNA 234 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 3334555555555555555555555555555555555543 2233555555444444444444433
No 159
>KOG4657|consensus
Probab=84.30 E-value=27 Score=36.64 Aligned_cols=83 Identities=17% Similarity=0.229 Sum_probs=36.7
Q ss_pred hccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy15551 310 FNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQ 389 (640)
Q Consensus 310 ~~~~~~~~~~l~d~~~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEK 389 (640)
.|+++.|..+| +..+.+...+.+++.+...++..-.+-.++=.......+..|-++++ .++-|+-.
T Consensus 43 ~nS~~efar~l----S~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~----------elEvl~~n 108 (246)
T KOG4657|consen 43 MNSLVEFARAL----SQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQS----------ELEVLRRN 108 (246)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH
Confidence 44555555544 44445555555555554444433322222222223333333333333 23334445
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15551 390 KLELEDLVSKQAEEIVD 406 (640)
Q Consensus 390 NleLEEKIeELEetIeD 406 (640)
++.++++...+++.|..
T Consensus 109 ~Q~lkeE~dd~keiIs~ 125 (246)
T KOG4657|consen 109 LQLLKEEKDDSKEIISQ 125 (246)
T ss_pred HHHHHHHhhhHHHHHHH
Confidence 55555555555555544
No 160
>KOG4302|consensus
Probab=84.26 E-value=29 Score=41.21 Aligned_cols=136 Identities=15% Similarity=0.146 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q psy15551 340 EKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEE----MVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVS 414 (640)
Q Consensus 340 ~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEE----MVEELTEKNleLEEKIeELEetIeDLE-aLkELn 414 (640)
-++.-.++....+.+|.+.+..+++.|++|-..+-...+.-. --..|.++...+...++.|....++-- ++.++.
T Consensus 51 ~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~ 130 (660)
T KOG4302|consen 51 IYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELY 130 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777788888999999999999998877644433322 222455555555556666655555444 555666
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 415 DQLQEDAKEIE-------IELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAAL 475 (640)
Q Consensus 415 DELEEnhvE~E-------KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLe 475 (640)
.+++..-.+.- .-+-.+.|--...+.++..++..++++..+.-..+..|+..|..+.+.|.
T Consensus 131 ~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg 198 (660)
T KOG4302|consen 131 HQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLG 198 (660)
T ss_pred HHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 65555544443 11222223333555666666666666666666777777777777776664
No 161
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=84.21 E-value=81 Score=35.78 Aligned_cols=45 Identities=24% Similarity=0.430 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 329 HEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQV 373 (640)
Q Consensus 329 ~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~ 373 (640)
.++...+++|+.+.+.+..-.+...+|...+..++.++..+..|+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql 82 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQL 82 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555554
No 162
>KOG1029|consensus
Probab=84.00 E-value=1.1e+02 Score=37.34 Aligned_cols=115 Identities=23% Similarity=0.279 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH-
Q psy15551 337 DIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLEL-------EDLVSKQAEEIVDLE- 408 (640)
Q Consensus 337 ~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleL-------EEKIeELEetIeDLE- 408 (640)
++..-+++++++.+..+-.-...+++.+.|.++++.+--. . ..-..|..+.... ..+..+|+.....-+
T Consensus 466 ~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l-~--~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~ 542 (1118)
T KOG1029|consen 466 DITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKL-A--PEKQELNHQLKQKQSAHKETTQRKSELEAARRKKEL 542 (1118)
T ss_pred ccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-h--hHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHH
Confidence 3455677777888877777777777776666665544211 1 1111222222222 123556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 409 ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLAD 455 (640)
Q Consensus 409 aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLED 455 (640)
..+.+.|++.+...|+++.+ ++|+..+.++.++..-...+.-..++
T Consensus 543 irq~ikdqldelskE~esk~-~eidi~n~qlkelk~~~~~q~lake~ 588 (1118)
T KOG1029|consen 543 IRQAIKDQLDELSKETESKL-NEIDIFNNQLKELKEDVNSQQLAKEE 588 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888877665 46788888888877766666655554
No 163
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=83.88 E-value=52 Score=33.35 Aligned_cols=42 Identities=12% Similarity=0.246 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy15551 380 EEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDA 421 (640)
Q Consensus 380 EEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnh 421 (640)
...++.+..++..+...+..++..|.... .+.++...+..-.
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~ 104 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRR 104 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555 4444444444433
No 164
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=83.81 E-value=58 Score=33.79 Aligned_cols=82 Identities=24% Similarity=0.420 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 327 EKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAAL--GAEEMVQQLSVQKLELEDLVSKQAEEI 404 (640)
Q Consensus 327 ~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~--gAEEMVEELTEKNleLEEKIeELEetI 404 (640)
..+.|...+.++-+.++..+.++..+-.+..++..+...++++..+.-.|+ |-|+.-.+.-.+...|++.+..++..+
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~ 108 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAEL 108 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888999999999999999999999999999999999999998886 556777777777777777777777776
Q ss_pred HHHH
Q psy15551 405 VDLE 408 (640)
Q Consensus 405 eDLE 408 (640)
..+.
T Consensus 109 ~~~~ 112 (225)
T COG1842 109 QQAE 112 (225)
T ss_pred HHHH
Confidence 6655
No 165
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=83.75 E-value=34 Score=32.56 Aligned_cols=78 Identities=22% Similarity=0.239 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 384 QQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQ--------EDAKEIEIELKEEVEMARSATREVIREKEAALESLAD 455 (640)
Q Consensus 384 EELTEKNleLEEKIeELEetIeDLEaLkELnDELE--------EnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLED 455 (640)
..+-.+...++-.+.+.+..+++++.+.+-..-+- ..+-+...+|.+.++.++..|..+.++.....++++.
T Consensus 23 ~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~e 102 (119)
T COG1382 23 QKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEE 102 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555554433111100 0111222555666666666666666655555555555
Q ss_pred HHHHHH
Q psy15551 456 RELTIV 461 (640)
Q Consensus 456 lE~TIs 461 (640)
+...|.
T Consensus 103 Lq~~i~ 108 (119)
T COG1382 103 LQSEIQ 108 (119)
T ss_pred HHHHHH
Confidence 444443
No 166
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=83.47 E-value=1.2e+02 Score=37.02 Aligned_cols=113 Identities=21% Similarity=0.223 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHhhcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH------HHHHHH
Q psy15551 363 EADCADLHEQVDAALGAE----EMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIE------IELKEE 431 (640)
Q Consensus 363 e~~~~~l~~q~d~a~gAE----EMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~E------KeLREE 431 (640)
.+...+++..++.--+.+ ...+.-+..+..+.++++.++..-.+++ .|....++++..+.++. ..|+.+
T Consensus 560 ~s~~sEIK~~f~~~ss~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~e 639 (769)
T PF05911_consen 560 SSMRSEIKKNFDGDSSSEAEINSEDEADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSE 639 (769)
T ss_pred HHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555554433332 1234566677788888888888888888 78888888888777765 556666
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 432 VEMARSATREVIREKEAA-------LESLADRELTIVKFRELVIREKEAAL 475 (640)
Q Consensus 432 LD~kdsqIrEL~rRIeq~-------eEqLEDlE~TIsKFRELV~~LQedLe 475 (640)
+......-.....++... ..++.+.+..+......|..|+.+|+
T Consensus 640 L~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele 690 (769)
T PF05911_consen 640 LESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELE 690 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 665554444444444444 33444445566666677777777765
No 167
>KOG4809|consensus
Probab=82.69 E-value=1e+02 Score=36.30 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 332 SKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQV 373 (640)
Q Consensus 332 ~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~ 373 (640)
...+.+|+..+.++..|......|...+++.++..-||++..
T Consensus 327 rE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkeha 368 (654)
T KOG4809|consen 327 RERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHA 368 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888887777778888888888888877753
No 168
>KOG0946|consensus
Probab=82.68 E-value=1.3e+02 Score=36.98 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhh
Q psy15551 132 QVELDLAKEKIEELTLDIELMKADI 156 (640)
Q Consensus 132 ~~el~~~k~k~eel~le~e~lk~e~ 156 (640)
-.|+..+..+...++-+.+.+.++.
T Consensus 736 ~eel~a~~~e~k~l~~~q~~l~~~L 760 (970)
T KOG0946|consen 736 NEELNAALSENKKLENDQELLTKEL 760 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 169
>KOG1029|consensus
Probab=82.40 E-value=1.3e+02 Score=36.87 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy15551 125 EERAETLQVELDLAKEKIEELTLDIEL 151 (640)
Q Consensus 125 ee~~e~l~~el~~~k~k~eel~le~e~ 151 (640)
.++.-+|+.||+.+..|+..|.-.|--
T Consensus 436 nak~~ql~~eletLn~k~qqls~kl~D 462 (1118)
T KOG1029|consen 436 NAKKKQLQQELETLNFKLQQLSGKLQD 462 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 345667777777777777776644433
No 170
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=82.33 E-value=98 Score=37.69 Aligned_cols=107 Identities=23% Similarity=0.268 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH-----
Q psy15551 366 CADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIE---IELKEEVEMAR----- 436 (640)
Q Consensus 366 ~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~E---KeLREELD~kd----- 436 (640)
---|+-||-..++. .+.|..+|.+|-.-|+.++.+-..+- .+.+.+.+|-++..++. ..++-|++..-
T Consensus 436 N~~Lq~ql~es~k~---~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~ 512 (861)
T PF15254_consen 436 NMSLQNQLQESLKS---QELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKS 512 (861)
T ss_pred HHHHHHHHHHHHHh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455565555554 33444555555555555555555555 56666666666666555 33444444433
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 437 --SATREVIREKEAALESLADRELTIVKFRELVIREKEAAL 475 (640)
Q Consensus 437 --sqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLe 475 (640)
-.+.+...+...+.-.+-..+..|.++|++.+.||.-..
T Consensus 513 ~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma 553 (861)
T PF15254_consen 513 LQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMA 553 (861)
T ss_pred HhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666777788889999999999988654
No 171
>PF13166 AAA_13: AAA domain
Probab=82.29 E-value=1e+02 Score=35.66 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy15551 383 VQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQ 416 (640)
Q Consensus 383 VEELTEKNleLEEKIeELEetIeDLE-aLkELnDE 416 (640)
+..++.....+...|.+....+..+. ....+.+.
T Consensus 365 ~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~ 399 (712)
T PF13166_consen 365 IDELNSIIDELNELIEEHNEKIDNLKKEQNELKDK 399 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544 33333333
No 172
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=81.89 E-value=99 Score=35.10 Aligned_cols=141 Identities=18% Similarity=0.271 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q psy15551 330 EMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMV----QQLSVQKLELEDLVSKQAEEIV 405 (640)
Q Consensus 330 ~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMV----EELTEKNleLEEKIeELEetIe 405 (640)
+...+.+.+-+-.++++.+.+....|..+|..+-++-..|.+|.+..+.....+ ++|+.+..+|.-+-+..+-.-.
T Consensus 124 ~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~ 203 (499)
T COG4372 124 ELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQ 203 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666777777777788888888777777777777654443333 3454444444433322221111
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 406 DLE----ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREK 471 (640)
Q Consensus 406 DLE----aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQ 471 (640)
.|- +......+|.- ...--.....+|..++.+|.....+|.+-.+.|...+..+........-++
T Consensus 204 ~la~r~~a~q~r~~ela~-r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~le 272 (499)
T COG4372 204 NLATRANAAQARTEELAR-RAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLE 272 (499)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 22222222221 111114556666666666666666666655555555544444433333333
No 173
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=81.62 E-value=25 Score=35.26 Aligned_cols=75 Identities=27% Similarity=0.344 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHH
Q psy15551 106 DTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLR 185 (640)
Q Consensus 106 ~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLr 185 (640)
.++++...++.+.-.++--++|...+ .+++.++.+ +..|+++++.+... .|..+.++.+....++
T Consensus 84 ~i~~l~~~i~~~~~~r~~~~eR~~~l-~~l~~l~~~-------~~~l~~el~~~~~~-------Dp~~i~~~~~~~~~~~ 148 (188)
T PF03962_consen 84 KIEELEEKIEEAKKGREESEEREELL-EELEELKKE-------LKELKKELEKYSEN-------DPEKIEKLKEEIKIAK 148 (188)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHH-HHHHHHHHH-------HHHHHHHHHHHHhc-------CHHHHHHHHHHHHHHH
Confidence 44555566665555555556666533 344444444 44444555433322 5678899999999999
Q ss_pred HHHHHhhhch
Q psy15551 186 ETLVRLRDLS 195 (640)
Q Consensus 186 eaLvrlRd~s 195 (640)
+++.|.-|=-
T Consensus 149 ~~anrwTDNI 158 (188)
T PF03962_consen 149 EAANRWTDNI 158 (188)
T ss_pred HHHHHHHhhH
Confidence 9999887743
No 174
>KOG0804|consensus
Probab=81.38 E-value=78 Score=36.31 Aligned_cols=43 Identities=19% Similarity=0.061 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 412 VVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLA 454 (640)
Q Consensus 412 ELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLE 454 (640)
|++.-|.+++.--...+.+..+.....+.....+|.++++++-
T Consensus 403 E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 403 EENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444433334444433333333434444444444433
No 175
>KOG0995|consensus
Probab=81.27 E-value=1.2e+02 Score=35.69 Aligned_cols=112 Identities=22% Similarity=0.362 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy15551 73 AEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE---------------------DTADLVETLEMMTLDKEMAEERAETL 131 (640)
Q Consensus 73 ~~~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e---------------------~~~d~~~~lem~tldkemaee~~e~l 131 (640)
.+|+.++.+....+-.+++.+++...++.+.-. |+.-....+.-|+=-+.--+-..+.+
T Consensus 220 ~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l 299 (581)
T KOG0995|consen 220 DELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEML 299 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 456666655555555555555554444432211 22222233333333333344455666
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhh
Q psy15551 132 QVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLR 192 (640)
Q Consensus 132 ~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvrlR 192 (640)
+.|++..-+.+|-|..+..-||..++.. .-|..++.+|-+.+..|...|-++-
T Consensus 300 ~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q--------~iS~~dve~mn~Er~~l~r~l~~i~ 352 (581)
T KOG0995|consen 300 KSEIEEKEEEIEKLQKENDELKKQIELQ--------GISGEDVERMNLERNKLKRELNKIQ 352 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666677666662 2577888888888888888877653
No 176
>KOG0804|consensus
Probab=81.26 E-value=99 Score=35.53 Aligned_cols=46 Identities=13% Similarity=0.148 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 392 ELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIRE 445 (640)
Q Consensus 392 eLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rR 445 (640)
.++.++.++...+++.. ++.+.. |..+.|++.++-....+.++.++
T Consensus 379 ~~e~k~~q~q~k~~k~~kel~~~~--------E~n~~l~knq~vw~~kl~~~~e~ 425 (493)
T KOG0804|consen 379 IVERKLQQLQTKLKKCQKELKEER--------EENKKLIKNQDVWRGKLKELEER 425 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444555555555544 332222 44455555555555555544443
No 177
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=81.14 E-value=27 Score=30.35 Aligned_cols=84 Identities=24% Similarity=0.326 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 335 QKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDA------------ALGAEEMVQQLSVQKLELEDLVSKQAE 402 (640)
Q Consensus 335 ~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~------------a~gAEEMVEELTEKNleLEEKIeELEe 402 (640)
+.....+..+...+......+...+.+++.....|..-=|. -...++.++.|+++...++..|..++.
T Consensus 4 ~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~ 83 (106)
T PF01920_consen 4 QNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEK 83 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555556565555555543222 124678888888888888888888888
Q ss_pred HHHHHH-HHHHHHHHHH
Q psy15551 403 EIVDLE-ALQVVSDQLQ 418 (640)
Q Consensus 403 tIeDLE-aLkELnDELE 418 (640)
.+..++ .+.++...|.
T Consensus 84 ~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 84 QLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 888888 7777776664
No 178
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=80.51 E-value=50 Score=30.84 Aligned_cols=92 Identities=21% Similarity=0.336 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------------------------
Q psy15551 329 HEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAA-------------------------------- 376 (640)
Q Consensus 329 ~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a-------------------------------- 376 (640)
.+++.++..+..++++...|..+...+...+.+....++.|. .+...
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~-~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~ 84 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLE-ELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGA 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCC
Confidence 345555555555555555555555555555555554444443 22210
Q ss_pred -----hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy15551 377 -----LGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDA 421 (640)
Q Consensus 377 -----~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnh 421 (640)
...++-++.|..+...++..+..++..+..+. .+..+...+++..
T Consensus 85 g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 85 GYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13455666666666666666666666666666 5555555555443
No 179
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=80.48 E-value=15 Score=38.59 Aligned_cols=66 Identities=35% Similarity=0.565 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 333 KLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 333 ~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
.+..+.++.+....++++.++.|..+++++++.++.+++.+ +.|...|-.|++....+...+.+|.
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erl----------k~le~E~s~LeE~~~~l~~ev~~L~ 197 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERL----------KRLEVENSRLEEMLKKLPGEVYDLK 197 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhchhHHHHHH
Confidence 33444555555566666666666666677776666665543 3344444444444444444444444
No 180
>KOG0946|consensus
Probab=80.45 E-value=1.5e+02 Score=36.38 Aligned_cols=72 Identities=19% Similarity=0.208 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy15551 345 NAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMV----QQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQ 416 (640)
Q Consensus 345 ~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMV----EELTEKNleLEEKIeELEetIeDLE-aLkELnDE 416 (640)
.++..++...+..+++..+.+++.+-+..-++...-+-+ ..+...+-..+.++..|.+.+.... -++++.+.
T Consensus 801 l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk 877 (970)
T KOG0946|consen 801 LSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEK 877 (970)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhh
Confidence 333334334444444555555555444443332221111 1233344444444455555554444 33333333
No 181
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=80.04 E-value=1.3e+02 Score=35.42 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhh
Q psy15551 121 KEMAEERAETLQVELDLAKEKIEELTLDIELMKADIE 157 (640)
Q Consensus 121 kemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e 157 (640)
.+.+....+-+...+..++.++++.+.+++..|.+..
T Consensus 189 ~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~ 225 (754)
T TIGR01005 189 SESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSD 225 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4455666777888888889999988888888887643
No 182
>PRK10698 phage shock protein PspA; Provisional
Probab=79.86 E-value=76 Score=32.54 Aligned_cols=130 Identities=15% Similarity=0.195 Sum_probs=64.7
Q ss_pred hHHHHhh--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH--------HHHHHHH
Q psy15551 55 YREKTRD--LDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE--------DTAD--------LVETLEM 116 (640)
Q Consensus 55 d~~k~~~--l~~~~~~~~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e--------~~~d--------~~~~lem 116 (640)
|++|+-+ +.+|...+.....--+..+..+..+++++..+.....++...-. ++|. ..+.+.-
T Consensus 24 DP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~ 103 (222)
T PRK10698 24 DPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIAT 103 (222)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6665533 24455555554445666667777777777777777766554332 2221 1222222
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcC-------CCCCCCCcchHHHHHHHHHHHHH
Q psy15551 117 MTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCD-------GAGDGTEVSHYQIKQLEQQNMRL 184 (640)
Q Consensus 117 ~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~-------~~~~~~~~~~~~~~qle~qN~rL 184 (640)
..-.-+.....++.|+..+..++.+|++....-..|.+-...... .+|.++..+...+-++|...+++
T Consensus 104 l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~ 178 (222)
T PRK10698 104 LEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQM 178 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHH
Confidence 222223333444455555555555555555554444332211100 12333344556677777777665
No 183
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=79.60 E-value=57 Score=30.91 Aligned_cols=85 Identities=27% Similarity=0.415 Sum_probs=50.1
Q ss_pred ccchhhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q psy15551 315 KFDSRLRDLSA---HEKHEMSKLQKDIEEKKQENAELIKSQEKL---KQRVTELEADCADLHEQVDAALGAEEMVQQLSV 388 (640)
Q Consensus 315 ~~~~~l~d~~~---~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l---~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTE 388 (640)
++.|+||.++. ..+.++..++..-+....|+..|....+.+ ..++..++..+.+|....+++|.. +.+-++
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lel---lGEK~E 96 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLEL---LGEKSE 96 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcchHH
Confidence 45556665554 356666666666666666766666666443 456667777777777777777654 444444
Q ss_pred HHHHHHHHHHHHHH
Q psy15551 389 QKLELEDLVSKQAE 402 (640)
Q Consensus 389 KNleLEEKIeELEe 402 (640)
++.+|...|.+++.
T Consensus 97 ~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 97 EVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444443333
No 184
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=79.26 E-value=80 Score=32.42 Aligned_cols=123 Identities=21% Similarity=0.238 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q psy15551 333 KLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQ 411 (640)
Q Consensus 333 ~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLk 411 (640)
..|+.+.....+..+|...+..+..++..++..+..+..+ |..+..+..+|+.++..++.+-.++. -+.
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~----------v~~q~~el~~L~~qi~~~~~~~~~l~p~m~ 108 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQ----------VASQEQELASLEQQIEQIEETRQELVPLME 108 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433333 33344455555555555555555555 444
Q ss_pred HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 412 VVSDQLQEDAK-----------EIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRE 465 (640)
Q Consensus 412 ELnDELEEnhv-----------E~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRE 465 (640)
.+-+.|+..-. +--..|+..++..+....+--+++-..-..-.+|-.+|.-++.
T Consensus 109 ~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~~dv~~~ek~r~vlea~~~E~~yg~~i~~~~~ 173 (251)
T PF11932_consen 109 QMIDELEQFVELDLPFLLEERQERLARLRAMLDDADVSLAEKFRRVLEAYQIEMEYGRTIEVYQG 173 (251)
T ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhCCceeEEEE
Confidence 55555543110 1114444444444444444444444444444445555444433
No 185
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=78.51 E-value=1.3e+02 Score=34.30 Aligned_cols=47 Identities=21% Similarity=0.316 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 328 KHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVD 374 (640)
Q Consensus 328 k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d 374 (640)
+.+.++|+++|...+.+++.+....-.....+..++..|+++...+.
T Consensus 58 ~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~ 104 (420)
T COG4942 58 QDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLN 104 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH
Confidence 34444555555555555544444444444444444444444443333
No 186
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=78.34 E-value=99 Score=32.98 Aligned_cols=33 Identities=21% Similarity=0.159 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 442 VIREKEAALESLADRELTIVKFRELVIREKEAA 474 (640)
Q Consensus 442 L~rRIeq~eEqLEDlE~TIsKFRELV~~LQedL 474 (640)
+...|....+.+.+++..|.+++..|..|+.+.
T Consensus 191 m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 191 MQKEIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444444444443
No 187
>KOG1937|consensus
Probab=77.74 E-value=1.4e+02 Score=34.42 Aligned_cols=15 Identities=7% Similarity=0.025 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhhhhh
Q psy15551 527 GHLLMDYVKILSTAS 541 (640)
Q Consensus 527 sVl~lLlf~RLa~Ac 541 (640)
+=+++=+|.||..-|
T Consensus 447 vR~aykllt~iH~nc 461 (521)
T KOG1937|consen 447 VRLAYKLLTRIHLNC 461 (521)
T ss_pred HHHHHHHHHHHHHHH
Confidence 346777788888333
No 188
>KOG4807|consensus
Probab=77.48 E-value=1.4e+02 Score=34.11 Aligned_cols=84 Identities=26% Similarity=0.499 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHH--HHHHHHHHHHHHHH----HHHHHHhh
Q psy15551 76 KAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTL--DKEMAE--ERAETLQVELDLAK----EKIEELTL 147 (640)
Q Consensus 76 k~~~~~~~~~~~~el~~~k~~~~e~~~~~e~~~d~~~~lem~tl--dkemae--e~~e~l~~el~~~k----~k~eel~l 147 (640)
..+|.++|..-||||++|+.++.-+.. +++|--...+|-|.= -.||-. ++-..++..++.++ +.++.+.-
T Consensus 351 QkkiEdLQRqHqRELekLreEKdrLLA--EETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqR 428 (593)
T KOG4807|consen 351 QKKIEDLQRQHQRELEKLREEKDRLLA--EETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQR 428 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHH
Confidence 357788888889999999988765533 244444444444321 112211 22334555566554 34555666
Q ss_pred hHHHHHHhhhhhcC
Q psy15551 148 DIELMKADIEKSCD 161 (640)
Q Consensus 148 e~e~lk~e~e~~~~ 161 (640)
++++|-+.-...|-
T Consensus 429 ELeVLSEQYSQKCL 442 (593)
T KOG4807|consen 429 ELEVLSEQYSQKCL 442 (593)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777666555553
No 189
>KOG0994|consensus
Probab=77.03 E-value=2.3e+02 Score=36.45 Aligned_cols=32 Identities=31% Similarity=0.394 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhh
Q psy15551 127 RAETLQVELDLAKEKIEELTLDIELMKADIEK 158 (640)
Q Consensus 127 ~~e~l~~el~~~k~k~eel~le~e~lk~e~e~ 158 (640)
||+.|+.+-..++.+-+.+....+..++-+++
T Consensus 1543 ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~ 1574 (1758)
T KOG0994|consen 1543 RAENLQSEAERARSRAEDVKGQAEDVVEALEE 1574 (1758)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555554444433
No 190
>KOG0249|consensus
Probab=77.02 E-value=1.8e+02 Score=35.52 Aligned_cols=105 Identities=16% Similarity=0.174 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH---
Q psy15551 360 TELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQL-----------QEDAKEIE--- 425 (640)
Q Consensus 360 ~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLEaLkELnDEL-----------EEnhvE~E--- 425 (640)
..+...-+.|.+.++++..+++-....-++.+.|.+.++++.+++.+....-+++.+= ...|...-
T Consensus 135 e~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaA 214 (916)
T KOG0249|consen 135 ETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAA 214 (916)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHH
Confidence 3445555678899999999998888888888889988888888888877655555432 22232222
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 426 ----IELKEEVEMARSATREVIREKEAALESLADRELTIVKFR 464 (640)
Q Consensus 426 ----KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFR 464 (640)
..|-++++....++.+....-+....-++++-..+.+++
T Consensus 215 le~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 215 LEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444
No 191
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=76.29 E-value=43 Score=37.14 Aligned_cols=50 Identities=34% Similarity=0.383 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy15551 99 EAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMK 153 (640)
Q Consensus 99 e~~~~~e~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk 153 (640)
+.....+++++..+.|.-- .|.||- +.++.|+..++.++++|+.++.+|=
T Consensus 54 ~~~~~~~~l~~a~~~l~~~-~D~em~----ema~~Ei~~~~~~~~~le~~L~~lL 103 (363)
T COG0216 54 EYKKAQEDLEDAKEMLAEE-KDPEMR----EMAEEEIKELEAKIEELEEELKILL 103 (363)
T ss_pred HHHHHHHHHHHHHHHHhcc-CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333344455444444433 577664 4567788888999999999988883
No 192
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=76.23 E-value=54 Score=29.46 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 382 MVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQL-QEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTI 460 (640)
Q Consensus 382 MVEELTEKNleLEEKIeELEetIeDLEaLkELnDEL-EEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TI 460 (640)
.+..+..+...++..+.+.+..+++++.+.+=..-+ .--.+=++....+-+...+..+..+..++......+.+.+..+
T Consensus 14 ~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~ 93 (105)
T cd00632 14 QLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKL 93 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555442100000 0000111133333333344444444444444444444444444
Q ss_pred HHHHHHHHHH
Q psy15551 461 VKFRELVIRE 470 (640)
Q Consensus 461 sKFRELV~~L 470 (640)
..++..+..+
T Consensus 94 ~elk~~l~~~ 103 (105)
T cd00632 94 KELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 193
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=73.84 E-value=80 Score=29.65 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=16.0
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 368 DLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 368 ~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
|++.|...+-.+....+.=-...-+.-..|..++..+..+.
T Consensus 32 dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~ 72 (132)
T PF07926_consen 32 DLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQ 72 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433322333333333333443333333
No 194
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=73.84 E-value=1.4e+02 Score=32.59 Aligned_cols=114 Identities=19% Similarity=0.331 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHH
Q psy15551 325 AHEKHEMSKLQKDIEEKKQENAELIKSQEK-------LKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLV 397 (640)
Q Consensus 325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~-------l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKI 397 (640)
.++|+--.+|..+++.+.+-++.-+...+. +.-.+.......-.|+..++.- |..|.+.|.-|..++
T Consensus 80 e~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d------~S~lkd~ne~LsQqL 153 (305)
T PF14915_consen 80 EKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSD------VSNLKDNNEILSQQL 153 (305)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcch------HHhHHHHhHHHHHHH
Confidence 677888888888888888777765544332 2222222223333344333322 557899999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 398 SKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIRE 445 (640)
Q Consensus 398 eELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rR 445 (640)
...+..++-|+ .|+...+.|-+...-++ .++.++.....++.++..-
T Consensus 154 skaesK~nsLe~elh~trdaLrEKtL~lE-~~QrdL~Qtq~q~KE~e~m 201 (305)
T PF14915_consen 154 SKAESKFNSLEIELHHTRDALREKTLALE-SVQRDLSQTQCQIKEIEHM 201 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 99999999999 89999999988766554 5566666666666555443
No 195
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=73.71 E-value=1.1e+02 Score=31.41 Aligned_cols=110 Identities=15% Similarity=0.248 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Q psy15551 342 KQENAELIKSQEKLKQRVTELEADCADLHEQVD----AALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-----ALQV 412 (640)
Q Consensus 342 ~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d----~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-----aLkE 412 (640)
..++..+....+.+...|..+|....||+.... ...|.-.-=+.|.....++..+|...+..+.-|- .|.-
T Consensus 68 ~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ 147 (207)
T PF05010_consen 68 EAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEK 147 (207)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555555555543 2223322333334444444444444444443332 4556
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 413 VSDQLQEDAKEIE---IELKEEVEMARSATREVIREKEAALE 451 (640)
Q Consensus 413 LnDELEEnhvE~E---KeLREELD~kdsqIrEL~rRIeq~eE 451 (640)
.|.++...+.... ..|+..|......+..+...+.+-..
T Consensus 148 ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~k 189 (207)
T PF05010_consen 148 ANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTK 189 (207)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666555543 33444444444444444433333333
No 196
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=73.55 E-value=1.2e+02 Score=31.62 Aligned_cols=48 Identities=4% Similarity=0.122 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 426 IELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEA 473 (640)
Q Consensus 426 KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQed 473 (640)
..+..+|..++..|.............+..+......+++.|..+..+
T Consensus 56 rqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 56 RQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666666666655555666667777666665
No 197
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=73.49 E-value=43 Score=36.04 Aligned_cols=12 Identities=17% Similarity=0.196 Sum_probs=4.2
Q ss_pred HhHhHhhcCCCC
Q psy15551 507 VTYFNTFYPVLF 518 (640)
Q Consensus 507 l~~l~~FLPdsF 518 (640)
...+..|-|+.|
T Consensus 216 ~~~~~ly~~~~~ 227 (314)
T PF04111_consen 216 KTTYPLYSSGSF 227 (314)
T ss_dssp CEEEESS--SS-
T ss_pred CeEEecccCCCc
Confidence 344455555543
No 198
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=73.28 E-value=12 Score=42.76 Aligned_cols=8 Identities=25% Similarity=0.679 Sum_probs=5.0
Q ss_pred hhcCC-CCC
Q psy15551 512 TFYPV-LFP 519 (640)
Q Consensus 512 ~FLPd-sF~ 519 (640)
.|+|. +|.
T Consensus 212 ~YiPsgSf~ 220 (475)
T PRK13729 212 PYIPSGSFA 220 (475)
T ss_pred ceeCCCCeE
Confidence 57766 564
No 199
>KOG0978|consensus
Probab=73.28 E-value=2.2e+02 Score=34.45 Aligned_cols=212 Identities=17% Similarity=0.143 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 328 KHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDL 407 (640)
Q Consensus 328 k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDL 407 (640)
..++++|-.++++.-+.|=.|.....+..+....+.....-|.+|+-..... +.-+..+...|+++..-+...+.-+
T Consensus 467 Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~---~~~~~~~i~~leeq~~~lt~~~~~l 543 (698)
T KOG0978|consen 467 QEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKAS---VDKLELKIGKLEEQERGLTSNESKL 543 (698)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHhhhhh
Confidence 3456667777777666666665555554444444443333333333221111 2234455666666777776666666
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHh
Q psy15551 408 E-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELTIV 486 (640)
Q Consensus 408 E-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL~~~~~~~~~ 486 (640)
. .+.-...-++ .+.-...++-...+++.........++++.+..+.+....+..|+....++++++.-+ . -
T Consensus 544 ~~el~~~~~~le-~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L--~-----~ 615 (698)
T KOG0978|consen 544 IKELTTLTQSLE-MLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERL--K-----R 615 (698)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-----H
Confidence 6 4544444443 3444456778888999999999999999999999999999999999999999988877 1 2
Q ss_pred hHHhhhhhhhhcchH-HHHHHHhHhHhhc--CCCCCCCCCCchHHH--HHHHHHHhhhhhhhhhchHHHHHHHHHhhcCC
Q psy15551 487 KFRELNSLDEKVSTE-NIEKCVTYFNTFY--PVLFPDTKFSHVGHL--LMDYVKILSTASDCLQTDSKIIQALIQETMMP 561 (640)
Q Consensus 487 ~~sasKA~~k~IEae-qA~~hl~~l~~FL--PdsF~~~GGD~DsVl--~lLlf~RLa~Acd~~~~Ka~Ll~~~I~e~~~~ 561 (640)
+....+.-...++++ -..+.+.-++..| |-=+.+ .-|+|+ |.=+|.==. +.+.+.-+..-
T Consensus 616 kle~~k~~~~~~s~d~~L~EElk~yK~~LkCs~Cn~R---~Kd~vI~kC~H~FC~~C------------vq~r~etRqRK 680 (698)
T KOG0978|consen 616 KLERLKKEESGASADEVLAEELKEYKELLKCSVCNTR---WKDAVITKCGHVFCEEC------------VQTRYETRQRK 680 (698)
T ss_pred HHHHhccccccccccHHHHHHHHHHHhceeCCCccCc---hhhHHHHhcchHHHHHH------------HHHHHHHhcCC
Confidence 233322222212211 1234455555555 665654 355543 333333222 66677777777
Q ss_pred Cccc
Q psy15551 562 CECY 565 (640)
Q Consensus 562 ~~~~ 565 (640)
||++
T Consensus 681 CP~C 684 (698)
T KOG0978|consen 681 CPKC 684 (698)
T ss_pred CCCC
Confidence 7765
No 200
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=72.83 E-value=75 Score=28.91 Aligned_cols=84 Identities=18% Similarity=0.265 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hh-------cHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 334 LQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDA-----AL-------GAEEMVQQLSVQKLELEDLVSKQA 401 (640)
Q Consensus 334 ~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~-----a~-------gAEEMVEELTEKNleLEEKIeELE 401 (640)
+...+..+.++...+......+...+.+.+..+..|..-=++ .. ..++.+..|.++...++..|..++
T Consensus 8 ~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~le 87 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQ 87 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555666666666655432111 11 233444555555555555555555
Q ss_pred HHHHHHH-HHHHHHHHH
Q psy15551 402 EEIVDLE-ALQVVSDQL 417 (640)
Q Consensus 402 etIeDLE-aLkELnDEL 417 (640)
..+..++ .+.++...|
T Consensus 88 k~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 88 RQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 5555554 444444443
No 201
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=72.38 E-value=89 Score=29.57 Aligned_cols=61 Identities=13% Similarity=0.201 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy15551 386 LSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIE---IELKEEVEMARSATREVIREK 446 (640)
Q Consensus 386 LTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~E---KeLREELD~kdsqIrEL~rRI 446 (640)
+..+....+.+...++..+..+. .++...+++........ .....|+-.++..+..++.++
T Consensus 85 ~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 85 LERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444444444 44444444444333222 445555555555555555443
No 202
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=72.12 E-value=8 Score=42.16 Aligned_cols=13 Identities=31% Similarity=0.521 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q psy15551 360 TELEADCADLHEQ 372 (640)
Q Consensus 360 ~~~e~~~~~l~~q 372 (640)
..+|..|+.|.++
T Consensus 38 saLEssv~sL~~S 50 (326)
T PF04582_consen 38 SALESSVASLSDS 50 (326)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 203
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=71.93 E-value=25 Score=33.98 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15551 381 EMVQQLSVQKLELEDLVSKQAE 402 (640)
Q Consensus 381 EMVEELTEKNleLEEKIeELEe 402 (640)
..|++|+.++..+++++..|+.
T Consensus 116 ~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 116 EEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555544
No 204
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=71.86 E-value=1.9e+02 Score=33.10 Aligned_cols=90 Identities=17% Similarity=0.180 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccChhhHHhhH----Hhhh---hhh-------hhc-chHHHHHHHhHhHhhcCCCC
Q psy15551 454 ADRELTIVKFRELVIREKEAALESLADRELTIVKF----RELN---SLD-------EKV-STENIEKCVTYFNTFYPVLF 518 (640)
Q Consensus 454 EDlE~TIsKFRELV~~LQedLeEL~~~~~~~~~~~----sasK---A~~-------k~I-EaeqA~~hl~~l~~FLPdsF 518 (640)
.|++..+...-+.+-..|..|+.+...+.-+.+++ ...+ +.. ..+ ..+.+... +|..|
T Consensus 388 ~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~~~~~~~~~~~~~~~~~~~~d~~~r-------~~~~~ 460 (511)
T PF09787_consen 388 NELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLKEEASNNRPSSILMKYSNSEDDAESR-------VPLLM 460 (511)
T ss_pred HhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHhhccCCCCchhhHhhccCCCchhhh-------hhhhc
Confidence 46777777777777777777776633222222221 1111 000 111 12233332 23333
Q ss_pred CCCCCCchHHHHHHHHHHhhhhhhhhhchHHHHHH
Q psy15551 519 PDTKFSHVGHLLMDYVKILSTASDCLQTDSKIIQA 553 (640)
Q Consensus 519 ~~~GGD~DsVl~lLlf~RLa~Acd~~~~Ka~Ll~~ 553 (640)
.. +++|. .+.-.|+|-+...|++..+..++-.
T Consensus 461 ~~--~~~d~-~~~~r~~~a~~~iD~~~ir~g~fLr 492 (511)
T PF09787_consen 461 KD--SPHDI-GVARRVKRAASVIDSFSIRLGIFLR 492 (511)
T ss_pred cC--CCccc-hHHHHHHHHHHHHhHhhHHHHHHHh
Confidence 32 23443 5778889988888998888776543
No 205
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=71.66 E-value=77 Score=28.56 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 328 KHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDL 407 (640)
Q Consensus 328 k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDL 407 (640)
..++..-..++.-+...|......+.++...+..+...+.+|.++... +...-.+...++++|..|+..+..|
T Consensus 13 ~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~-------l~~~l~~Id~Ie~~V~~LE~~v~~L 85 (99)
T PF10046_consen 13 ESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEE-------LQPYLQQIDQIEEQVTELEQTVYEL 85 (99)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666667777777778888888888888888888888888876643 3334445555666666666666665
Q ss_pred H
Q psy15551 408 E 408 (640)
Q Consensus 408 E 408 (640)
+
T Consensus 86 D 86 (99)
T PF10046_consen 86 D 86 (99)
T ss_pred H
Confidence 5
No 206
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=71.56 E-value=1.7e+02 Score=32.51 Aligned_cols=129 Identities=19% Similarity=0.192 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy15551 345 NAELIKSQEKLKQRVTELEADCADLHEQVDAAL--------GAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSD 415 (640)
Q Consensus 345 ~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~--------gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnD 415 (640)
..++.........+...+++...-+..+...-. ...+.+..|..+...+...+.++...+..-. .+..++.
T Consensus 241 ~~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 320 (458)
T COG3206 241 LSALNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEA 320 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHH
Confidence 333444444444555555555555555443222 2224677777777777777777777776665 6667777
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 416 QLQEDAKEIEIEL-------KEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEA 473 (640)
Q Consensus 416 ELEEnhvE~EKeL-------REELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQed 473 (640)
++.+.......++ ..+++-...+...+..++...+.++..+-....+++++-.+++..
T Consensus 321 q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~ 385 (458)
T COG3206 321 QLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAA 385 (458)
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHH
Confidence 7777666655444 444444555556666666666666666666666666665555443
No 207
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=71.27 E-value=78 Score=28.45 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy15551 379 AEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQED 420 (640)
Q Consensus 379 AEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEn 420 (640)
..+.+..|.++...++.+|..++..+.+++ .+.++..+|.+.
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777777777777766 666666666543
No 208
>PRK11281 hypothetical protein; Provisional
Probab=70.92 E-value=3e+02 Score=35.01 Aligned_cols=147 Identities=13% Similarity=0.159 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH---------HHHHHHHH
Q psy15551 331 MSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLEL---------EDLVSKQA 401 (640)
Q Consensus 331 ~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleL---------EEKIeELE 401 (640)
-.+|-..+....+....+...+...++.+..+......++||++..-|.--.=+-|-.+...| ..+|..+.
T Consensus 287 N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~s~~l~~~l~~q~~~LP~~~~~~~l~~~iAdlr 366 (1113)
T PRK11281 287 NLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGSLLLSRILYQQQQALPSADLIEGLADRIADLR 366 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCcccchHHHHHHHHH
Confidence 345556666666777777788888888888888888889999987766655555555555443 33444333
Q ss_pred HHHHHHHH-HHHHH------HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 402 EEIVDLEA-LQVVS------DQLQE-----DAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIR 469 (640)
Q Consensus 402 etIeDLEa-LkELn------DELEE-----nhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~ 469 (640)
-..=++++ ...+. +.+.. ...+....|.+-++.+..-+..+.+....+-..+-.++..-.+..+.+.+
T Consensus 367 l~~f~~~q~~~~l~~~~~y~~~l~~~~~~~~~~~~~~~l~~ll~~r~~LL~~l~~~~~~~l~~~~~l~~~q~Ql~~~~~~ 446 (1113)
T PRK11281 367 LEQFEINQQRDALFQPDAYIDKLEAGHKSEVTDEVRDALLQLLDERRELLDQLNKQLNNQLNLAINLQLNQQQLLSVSDS 446 (1113)
T ss_pred HHHHHHHHHHHHhcChhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333331 11111 11111 11122244555666666667777777777777777777777888888888
Q ss_pred HHHHHHhh
Q psy15551 470 EKEAALES 477 (640)
Q Consensus 470 LQedLeEL 477 (640)
++.-|.+.
T Consensus 447 l~~~L~~~ 454 (1113)
T PRK11281 447 LQSTLTQQ 454 (1113)
T ss_pred HHHHHHHh
Confidence 88888765
No 209
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=70.91 E-value=48 Score=28.81 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 426 IELKEEVEMARSATREVIREKEAALESLADRELT 459 (640)
Q Consensus 426 KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~T 459 (640)
..|.+.++..+..|..+...+......+.+++..
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444433
No 210
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=70.85 E-value=1.2e+02 Score=36.80 Aligned_cols=49 Identities=14% Similarity=0.164 Sum_probs=29.7
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy15551 377 LGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIE 425 (640)
Q Consensus 377 ~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~E 425 (640)
...+.+++.|..+...++++..+++....+++ ...++..++++...+..
T Consensus 516 ~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~ 565 (782)
T PRK00409 516 EKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEED 565 (782)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777766666 34444444444433333
No 211
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=70.75 E-value=27 Score=30.29 Aligned_cols=50 Identities=30% Similarity=0.436 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15551 329 HEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALG 378 (640)
Q Consensus 329 ~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~g 378 (640)
..|.-|+.++++++.++..|....+.|+.....+..+-....+.|++.+|
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666665556666665555
No 212
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=70.68 E-value=1.8e+02 Score=32.39 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 452 SLADRELTIVKFRELVIREKEAAL 475 (640)
Q Consensus 452 qLEDlE~TIsKFRELV~~LQedLe 475 (640)
++.+.+..+...+..+...+..+.
T Consensus 292 ~l~~~~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 292 EITDLNQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333344444444444444443
No 213
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=69.80 E-value=15 Score=40.20 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 427 ELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAA 474 (640)
Q Consensus 427 eLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedL 474 (640)
+|...++.....|.++..++......+.+.+..|....+.+..+....
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455556666666666666666666666666666666655555554443
No 214
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=69.33 E-value=1.3e+02 Score=30.10 Aligned_cols=101 Identities=19% Similarity=0.274 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q psy15551 355 LKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-----ALQVVSDQLQEDAKEIEIELK 429 (640)
Q Consensus 355 l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-----aLkELnDELEEnhvE~EKeLR 429 (640)
|.+-+.+++..+..++..|-.+. .....++.++.+++..+.+++ +|..=++.|-..-..-...+.
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~----------a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e 97 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVM----------ANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLE 97 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 33444444444444444444333 334444555555555555555 232223344333333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 430 EEVEMARSATREVIREKEAALESLADRELTIVKFRE 465 (640)
Q Consensus 430 EELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRE 465 (640)
..+......+..+...+..+...+..++..|..++.
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~ 133 (221)
T PF04012_consen 98 EQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKS 133 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443333333333333
No 215
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=69.21 E-value=1.7e+02 Score=31.38 Aligned_cols=24 Identities=25% Similarity=0.201 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 454 ADRELTIVKFRELVIREKEAALES 477 (640)
Q Consensus 454 EDlE~TIsKFRELV~~LQedLeEL 477 (640)
..+.+.|..||+.+..+.+++..+
T Consensus 189 ~~m~kei~~~re~i~el~e~I~~L 212 (258)
T PF15397_consen 189 QVMQKEIVQFREEIDELEEEIPQL 212 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666776666666666554
No 216
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=69.07 E-value=50 Score=31.92 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 358 RVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 358 kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
++..+...+..|...+. .+...+-.++|...+..|+.++..|+..+..|.
T Consensus 87 el~~l~~~~k~l~~eL~-~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 87 ELAELKKEVKSLEAELA-SLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443 334445567777888888888888888887776
No 217
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=69.03 E-value=1.4e+02 Score=30.37 Aligned_cols=82 Identities=23% Similarity=0.354 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 328 KHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDL 407 (640)
Q Consensus 328 k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDL 407 (640)
+.++..++..+++...||--|...+-.-...|...|..=++|-+- |....+..-.|.+++...+..+.++
T Consensus 18 ~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpql----------l~~h~eEvr~Lr~~LR~~q~~~r~~ 87 (194)
T PF15619_consen 18 QNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQL----------LQRHNEEVRVLRERLRKSQEQEREL 87 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555444444333333344444333333332 3333344444444444444444444
Q ss_pred H-HHHHHHHHHHH
Q psy15551 408 E-ALQVVSDQLQE 419 (640)
Q Consensus 408 E-aLkELnDELEE 419 (640)
+ .+++.+.+|..
T Consensus 88 ~~klk~~~~el~k 100 (194)
T PF15619_consen 88 ERKLKDKDEELLK 100 (194)
T ss_pred HHHHHHHHHHHHH
Confidence 4 44444444443
No 218
>KOG4673|consensus
Probab=68.98 E-value=2.8e+02 Score=33.86 Aligned_cols=48 Identities=21% Similarity=0.104 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 427 ELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAA 474 (640)
Q Consensus 427 eLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedL 474 (640)
.|+.-+..-.....+...+.-.+++.++.++..+++....++.+....
T Consensus 715 ~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~ 762 (961)
T KOG4673|consen 715 QLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKH 762 (961)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555666655555555555555544433
No 219
>KOG0249|consensus
Probab=68.46 E-value=2.6e+02 Score=34.20 Aligned_cols=37 Identities=32% Similarity=0.487 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhh
Q psy15551 121 KEMAEERAETLQVELDLAKEKIEELTLDIELMKADIE 157 (640)
Q Consensus 121 kemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e 157 (640)
.--|-|++++|..+++.+|..++++..+-+-+..+++
T Consensus 211 rmaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E 247 (916)
T KOG0249|consen 211 RMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIE 247 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3346788888888888888888877665555444443
No 220
>KOG4360|consensus
Probab=68.38 E-value=86 Score=36.55 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 330 EMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEAD 365 (640)
Q Consensus 330 ~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~ 365 (640)
++..++++|..+..+++.+.....||...+..+...
T Consensus 213 q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk 248 (596)
T KOG4360|consen 213 QARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKK 248 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 356667777777666666655555555444444433
No 221
>PRK00846 hypothetical protein; Provisional
Probab=68.24 E-value=44 Score=29.62 Aligned_cols=35 Identities=29% Similarity=0.322 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy15551 385 QLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQE 419 (640)
Q Consensus 385 ELTEKNleLEEKIeELEetIeDLE-aLkELnDELEE 419 (640)
+|+-+-..++++|.+|+..+.-.+ .+.++|+.+..
T Consensus 3 ~~~~~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~ 38 (77)
T PRK00846 3 QLSLRDQALEARLVELETRLSFQEQALTELSEALAD 38 (77)
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666777777777777766 56555555554
No 222
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=68.20 E-value=95 Score=28.24 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=42.6
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 373 VDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQ-------E-DAKEIEIELKEEVEMARSATREVIR 444 (640)
Q Consensus 373 ~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLEaLkELnDELE-------E-nhvE~EKeLREELD~kdsqIrEL~r 444 (640)
+...-.+...+..+..+...++..+.+.+.++++|+.+.+=..-+- + ...+....|...+++.+..|..+..
T Consensus 9 ~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek 88 (110)
T TIGR02338 9 LAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQR 88 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445666666677777777777777777775532111111 1 1112224455555555444444444
Q ss_pred HHHHHHHHHHHHHH
Q psy15551 445 EKEAALESLADREL 458 (640)
Q Consensus 445 RIeq~eEqLEDlE~ 458 (640)
++......+.+++.
T Consensus 89 ~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 89 QEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 223
>KOG4657|consensus
Probab=67.46 E-value=1.7e+02 Score=30.97 Aligned_cols=106 Identities=13% Similarity=0.144 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHhhcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q psy15551 362 LEADCADLHEQVDAALGAE--EMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQ--EDAKEIEIELKEEVEMAR 436 (640)
Q Consensus 362 ~e~~~~~l~~q~d~a~gAE--EMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELE--EnhvE~EKeLREELD~kd 436 (640)
.+++|..-+.-.|+.+|.. .|+..+.+--..+.....+++.-..++. ...++....+ +-.-.....+.+++-...
T Consensus 20 ~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q 99 (246)
T KOG4657|consen 20 CEKDIHNQRSKIDSFIQSPRRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQ 99 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555566666554 5555555555555555555555555544 3333332222 112222255666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 437 SATREVIREKEAALESLADRELTIVKFRELV 467 (640)
Q Consensus 437 sqIrEL~rRIeq~eEqLEDlE~TIsKFRELV 467 (640)
..+.-+.+.++.+.+...|+..+|+.-|+..
T Consensus 100 ~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~ 130 (246)
T KOG4657|consen 100 SELEVLRRNLQLLKEEKDDSKEIISQKRQAL 130 (246)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 7777777777777777777777777766544
No 224
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=67.16 E-value=1.3e+02 Score=29.37 Aligned_cols=49 Identities=14% Similarity=0.104 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q psy15551 428 LKEEVEMARSATREVIREKEAALESLADRELTI----VKFRELVIREKEAALE 476 (640)
Q Consensus 428 LREELD~kdsqIrEL~rRIeq~eEqLEDlE~TI----sKFRELV~~LQedLeE 476 (640)
|..++.....+|.++..........|...+..- ..+...|..|+.++.+
T Consensus 85 L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql~~ 137 (140)
T PF10473_consen 85 LDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQLKE 137 (140)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444444433332 2233344444444443
No 225
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=66.74 E-value=48 Score=30.31 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy15551 380 EEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSD 415 (640)
Q Consensus 380 EEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnD 415 (640)
++-++-|..+...+.+.+..++..+..+. .+..+..
T Consensus 85 ~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~ 121 (126)
T TIGR00293 85 EEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQ 121 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444 3433333
No 226
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=66.65 E-value=35 Score=33.31 Aligned_cols=21 Identities=19% Similarity=0.359 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy15551 354 KLKQRVTELEADCADLHEQVD 374 (640)
Q Consensus 354 ~l~~kL~~~e~~~~~l~~q~d 374 (640)
..+.++.........|+.||.
T Consensus 17 ~~K~~~~~~~~e~~~~k~ql~ 37 (155)
T PF06810_consen 17 APKAKVDKVKEERDNLKTQLK 37 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444
No 227
>PLN02939 transferase, transferring glycosyl groups
Probab=66.61 E-value=3.4e+02 Score=34.08 Aligned_cols=74 Identities=24% Similarity=0.345 Sum_probs=50.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH----------HHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHH
Q psy15551 111 VETLEMMTLDKEMAEERAETLQVELDLAKEKIE----------ELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQ 180 (640)
Q Consensus 111 ~~~lem~tldkemaee~~e~l~~el~~~k~k~e----------el~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~q 180 (640)
.+..+.-+|--|.--|++|.||.-|+.+..+.+ +|.-.|+-|++-+++ +....-+++.+..|.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 359 (977)
T PLN02939 285 EDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKE-----ANVSKFSSYKVELLQQK 359 (977)
T ss_pred hhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH-----hhHhhhhHHHHHHHHHH
Confidence 355666777777788899999988888876665 344555555555544 34444577888778888
Q ss_pred HHHHHHHHH
Q psy15551 181 NMRLRETLV 189 (640)
Q Consensus 181 N~rLreaLv 189 (640)
..++++-|.
T Consensus 360 ~~~~~~~~~ 368 (977)
T PLN02939 360 LKLLEERLQ 368 (977)
T ss_pred HHHHHHHHH
Confidence 888777654
No 228
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=66.55 E-value=33 Score=33.45 Aligned_cols=41 Identities=24% Similarity=0.388 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 332 SKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQ 372 (640)
Q Consensus 332 ~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q 372 (640)
..--++++..+............++.+|..+..+|.+|+..
T Consensus 9 ~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~ 49 (155)
T PF06810_consen 9 AENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKS 49 (155)
T ss_pred HHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445666566666666777778888888888888888874
No 229
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=66.42 E-value=3.1e+02 Score=33.50 Aligned_cols=22 Identities=36% Similarity=0.438 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15551 84 AGLKRELEKLKQEKQEAVEAKE 105 (640)
Q Consensus 84 ~~~~~el~~~k~~~~e~~~~~e 105 (640)
.+|+-++++||++.-.|.++..
T Consensus 432 ~~Le~elekLk~eilKAk~s~~ 453 (762)
T PLN03229 432 RELEGEVEKLKEQILKAKESSS 453 (762)
T ss_pred ccHHHHHHHHHHHHHhcccccC
Confidence 4688889999988887754443
No 230
>KOG1760|consensus
Probab=65.99 E-value=96 Score=30.10 Aligned_cols=91 Identities=21% Similarity=0.351 Sum_probs=55.4
Q ss_pred hhhhHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhh
Q psy15551 52 LFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMM-----------TLD 120 (640)
Q Consensus 52 ~~~d~~k~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e~~~d~~~~lem~-----------tld 120 (640)
.|+|+.++..+-+ ...-+..++.++..+|.+++.+..+..++-=+.+.=+|. .+|
T Consensus 15 t~EDQq~iN~Fsr--------------l~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~ 80 (131)
T KOG1760|consen 15 TFEDQQNINEFSR--------------LNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLD 80 (131)
T ss_pred cHHHHHHHHHHHH--------------HHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHH
Confidence 4667777665443 334455667777777777777776665331111110111 111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q psy15551 121 --KEMAEERAETLQVELDLAKEKIEELTLDIELMKADI 156 (640)
Q Consensus 121 --kemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~ 156 (640)
.+|.|+..++++.+++.+..+.+.....++-||.-+
T Consensus 81 ~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 81 KLQDQLEEKKETLEKEIEELESELESISARMDELKKVL 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778888888888888888877777777777643
No 231
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=65.95 E-value=2.1e+02 Score=31.29 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q psy15551 122 EMAEERAETLQVELDLAKEKIEELTLDIELMKADI 156 (640)
Q Consensus 122 emaee~~e~l~~el~~~k~k~eel~le~e~lk~e~ 156 (640)
..+....+-+..++..++.++++.+..+.-.+.+.
T Consensus 167 ~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 201 (444)
T TIGR03017 167 EPAQKAALWFVQQIAALREDLARAQSKLSAYQQEK 201 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555666777778888888888888888777664
No 232
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=65.92 E-value=2.6e+02 Score=32.38 Aligned_cols=44 Identities=14% Similarity=0.294 Sum_probs=17.7
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q psy15551 398 SKQAEEIVDLE--ALQVVSDQLQEDAKEIE----IELKEEVEMARSATRE 441 (640)
Q Consensus 398 eELEetIeDLE--aLkELnDELEEnhvE~E----KeLREELD~kdsqIrE 441 (640)
+.|+.+++-|. .|.+-+..+.+.+.+.- +=|++.|+..+.++.+
T Consensus 109 ~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~ 158 (475)
T PRK10361 109 QRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQD 158 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33344444443 34444444444333322 3344444444444443
No 233
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=65.76 E-value=2.2e+02 Score=31.56 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy15551 389 QKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIE 425 (640)
Q Consensus 389 KNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~E 425 (640)
+.-+.+++..+....|.++. .|.+++++|+....+.+
T Consensus 281 ~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 281 ELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555544 45555555554444433
No 234
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=65.76 E-value=1.4e+02 Score=29.28 Aligned_cols=94 Identities=18% Similarity=0.225 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-H-------------HH-----HHH----HHHHHHHHHHHHH
Q psy15551 381 EMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSD--Q-L-------------QE-----DAK----EIEIELKEEVEMA 435 (640)
Q Consensus 381 EMVEELTEKNleLEEKIeELEetIeDLEaLkELnD--E-L-------------EE-----nhv----E~EKeLREELD~k 435 (640)
..++.|..+...|...+.++..+++.++.++.... | | .- .++ -.++...+-+++.
T Consensus 20 ~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae~~~~eAie~l 99 (145)
T COG1730 20 SQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEKSADEAIEFL 99 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCceeeeecHHHHHHHH
Confidence 34566777777888888888888888887766652 0 0 00 000 1127888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 436 RSATREVIREKEAALESLADRELTIVKFRELVIREKEAA 474 (640)
Q Consensus 436 dsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedL 474 (640)
+..+.++...+......+.++..++.......+.++..-
T Consensus 100 ~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 100 KKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988888887776543
No 235
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=65.70 E-value=3.1e+02 Score=33.27 Aligned_cols=135 Identities=24% Similarity=0.283 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH--------HHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q psy15551 341 KKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGA--------EEMVQQLSVQK----LELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 341 ~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gA--------EEMVEELTEKN----leLEEKIeELEetIeDLE 408 (640)
...+...|......|.+.+......++.+.+|+.+|-.- ...-.+|+.+. ..|+++|.+++.... +
T Consensus 512 geaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~--E 589 (739)
T PF07111_consen 512 GEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVESRLR--E 589 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 344555555666666666666677777777776655321 11122222222 244444444433322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccChhhHH
Q psy15551 409 ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLAD-RELTIVKFRELVIREKEAALESLADRELTI 485 (640)
Q Consensus 409 aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLED-lE~TIsKFRELV~~LQedLeEL~~~~~~~~ 485 (640)
.|.++...|++...+..|. =..++..+++...-+++... ..-.-.-+++....|...++++-.|..||-
T Consensus 590 ~L~~~E~rLNeARREHtKa--------VVsLRQ~qrqa~reKer~~E~~~lq~e~~~~e~~rl~~rlqelerdkNl~l 659 (739)
T PF07111_consen 590 QLSEMEKRLNEARREHTKA--------VVSLRQIQRQAAREKERNQELRRLQEEARKEEGQRLTQRLQELERDKNLML 659 (739)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 5666666666655555433 23344444444433333333 222234456666777777777766766665
No 236
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=65.53 E-value=69 Score=36.79 Aligned_cols=79 Identities=25% Similarity=0.323 Sum_probs=41.1
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy15551 316 FDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELED 395 (640)
Q Consensus 316 ~~~~l~d~~~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEE 395 (640)
+..+||++-+. ++.+.+++..+..+|..|.+..+.|+++ -.+...||..|+..+. .++..+...|.+
T Consensus 57 P~DTlrTlva~----~k~~r~~~~~l~~~N~~l~~eN~~L~~r-------~~~id~~i~~av~~~~--~~~~~~~~ql~~ 123 (472)
T TIGR03752 57 PADTLRTLVAE----VKELRKRLAKLISENEALKAENERLQKR-------EQSIDQQIQQAVQSET--QELTKEIEQLKS 123 (472)
T ss_pred ccchHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHhhh--HHHHHHHHHHHH
Confidence 34456555554 4445555565666666655555554433 3446678888887643 333334444444
Q ss_pred HHHHHHHHHHHH
Q psy15551 396 LVSKQAEEIVDL 407 (640)
Q Consensus 396 KIeELEetIeDL 407 (640)
++..+...+.+|
T Consensus 124 ~~~~~~~~l~~l 135 (472)
T TIGR03752 124 ERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 237
>KOG0239|consensus
Probab=65.33 E-value=3e+02 Score=33.06 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy15551 394 EDLVSKQAEEIVDLE-ALQVVSDQLQE 419 (640)
Q Consensus 394 EEKIeELEetIeDLE-aLkELnDELEE 419 (640)
.+++..|+..+..+. .+..++++...
T Consensus 240 ~~~i~~l~~~l~~l~~~~~~l~~~~~~ 266 (670)
T KOG0239|consen 240 KKKIQALQQELEELKAELKELNDQVSL 266 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444 34444443333
No 238
>KOG0962|consensus
Probab=64.97 E-value=4.1e+02 Score=34.39 Aligned_cols=62 Identities=26% Similarity=0.373 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhhch
Q psy15551 126 ERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLS 195 (640)
Q Consensus 126 e~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvrlRd~s 195 (640)
++++.+..++.....+++++...++-+...+.. ...-...-+.+..|+.+++.++-.+=|-|
T Consensus 237 e~v~e~e~e~~~~~~~i~ei~~~~~el~k~~~~--------~~~l~~e~~~l~~~~~~l~~~i~~~~~~t 298 (1294)
T KOG0962|consen 237 EEVSELENELGPIEAKIEEIEKSLKELEKLLKQ--------VKLLDSEHKNLKKQISRLREKILKIFDGT 298 (1294)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 344455555555555555555554444332222 11222344677788888887776665655
No 239
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=64.94 E-value=2.9e+02 Score=32.67 Aligned_cols=92 Identities=15% Similarity=0.161 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q psy15551 384 QQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIE--IELKEEVEMARSATREVIREKEAALESLAD----- 455 (640)
Q Consensus 384 EELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~E--KeLREELD~kdsqIrEL~rRIeq~eEqLED----- 455 (640)
..-|.++++.-.-|...++.|...- .-+.++.+++.....+. =.+-.|+-|+++.-.+..++.=.+-..+-+
T Consensus 487 s~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rkaYK~La~lh~~c~~L 566 (594)
T PF05667_consen 487 SAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARKAYKLLASLHENCSQL 566 (594)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777666 67777888877777666 456678888887766666555444444333
Q ss_pred --HHHHHHHHHHHHHHHHHHHH
Q psy15551 456 --RELTIVKFRELVIREKEAAL 475 (640)
Q Consensus 456 --lE~TIsKFRELV~~LQedLe 475 (640)
.-...+.+.-.+.+|+.+|.
T Consensus 567 i~~v~~tG~~~rEirdLe~qI~ 588 (594)
T PF05667_consen 567 IETVEETGTISREIRDLEEQID 588 (594)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 22233444555555555554
No 240
>PRK04406 hypothetical protein; Provisional
Probab=64.62 E-value=43 Score=29.26 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy15551 393 LEDLVSKQAEEIVDLE-ALQVVSDQLQED 420 (640)
Q Consensus 393 LEEKIeELEetIeDLE-aLkELnDELEEn 420 (640)
++++|.+|+..+.-.+ .+.++|+.+-..
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Q 37 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQ 37 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444 344444444433
No 241
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=64.53 E-value=1.2e+02 Score=28.24 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 427 ELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKE 472 (640)
Q Consensus 427 eLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQe 472 (640)
.+.+-+++.+..+..+...+......+......+.+....+..+..
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666655555555555555555555555555554443
No 242
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=64.51 E-value=2.8e+02 Score=32.28 Aligned_cols=129 Identities=22% Similarity=0.207 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy15551 347 ELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIE 425 (640)
Q Consensus 347 ~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~E 425 (640)
.|+-+.--|..++.++.-.+..-+-=||..--+.+-|++|-+-+=..-=+-.+++.++..|- +|......|+|...+.+
T Consensus 335 dLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKe 414 (527)
T PF15066_consen 335 DLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKE 414 (527)
T ss_pred HhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33333333333444443333222222354444444444444443333333334455555554 55555555655555443
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15551 426 IELKEEVEMARSATREVI-------REKEAALESLADRELTIVKFRELVIREKEAALE 476 (640)
Q Consensus 426 KeLREELD~kdsqIrEL~-------rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeE 476 (640)
.|+-++....+...-++ ++....-.+...++.++.+=.+.|..||.---+
T Consensus 415 -tLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkge 471 (527)
T PF15066_consen 415 -TLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGE 471 (527)
T ss_pred -HHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 23333333332222221 111222234445777777777777777765433
No 243
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=64.50 E-value=78 Score=27.42 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 336 KDIEEKKQENAELIKSQEKLKQRVTELEADCADLHE 371 (640)
Q Consensus 336 ~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~ 371 (640)
+-|.++...++.|...-++|...-......|.-|+.
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~ 40 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRA 40 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 334444444555555545544444444444444433
No 244
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=64.50 E-value=3.1e+02 Score=32.73 Aligned_cols=29 Identities=10% Similarity=0.083 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 345 NAELIKSQEKLKQRVTELEADCADLHEQV 373 (640)
Q Consensus 345 ~~~l~~~~~~l~~kL~~~e~~~~~l~~q~ 373 (640)
..-|......++++|..+|..+.+.+.+=
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44466677778888888888888888873
No 245
>KOG0999|consensus
Probab=64.18 E-value=3.1e+02 Score=32.70 Aligned_cols=49 Identities=24% Similarity=0.409 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 327 EKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDA 375 (640)
Q Consensus 327 ~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~ 375 (640)
.-.++++|++++.....+.+.|..........+...+.+...-+++||-
T Consensus 316 ~iseiqkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~ 364 (772)
T KOG0999|consen 316 NISEIQKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDR 364 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHH
Confidence 3457889999998888888877665555444444444444445555543
No 246
>PRK00736 hypothetical protein; Provisional
Probab=63.57 E-value=37 Score=29.02 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy15551 392 ELEDLVSKQAEEIVDLE-ALQVVSDQLQEDA 421 (640)
Q Consensus 392 eLEEKIeELEetIeDLE-aLkELnDELEEnh 421 (640)
+++++|.+|+..+...| .+.++|+.+-..+
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq 32 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQW 32 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555 5555555555443
No 247
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=63.44 E-value=52 Score=34.80 Aligned_cols=71 Identities=31% Similarity=0.340 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHH
Q psy15551 325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVS 398 (640)
Q Consensus 325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIe 398 (640)
.+.|..+..++++-+++..++.++...++.+..++..++....-|.+.++--.|- +..|..+-.+|+..++
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~e---v~~L~~r~~ELe~~~E 208 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGE---VYDLKKRWDELEPGVE 208 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH---HHHHHHHHHHhccccc
Confidence 4556667788888888888888888888888888888888877777666654442 4555555555544443
No 248
>PF15294 Leu_zip: Leucine zipper
Probab=63.40 E-value=2.2e+02 Score=30.77 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 327 EKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHE 371 (640)
Q Consensus 327 ~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~ 371 (640)
...+|.+|+.+.+.++..+..+.+..-..-..-+.+++.+.+|+-
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777776666666665555555666666666655
No 249
>PRK00295 hypothetical protein; Provisional
Probab=63.26 E-value=42 Score=28.68 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy15551 393 LEDLVSKQAEEIVDLE-ALQVVSDQLQED 420 (640)
Q Consensus 393 LEEKIeELEetIeDLE-aLkELnDELEEn 420 (640)
++++|.+|+..+...| .+.++|+.+-..
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Q 31 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQ 31 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555 444445544443
No 250
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=63.09 E-value=2.8e+02 Score=31.78 Aligned_cols=83 Identities=20% Similarity=0.350 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHH
Q psy15551 106 DTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLR 185 (640)
Q Consensus 106 ~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLr 185 (640)
.+.++...++++. --.+..+.++...|.|..-.--.-|.+.+.+...|.++|.++.+.+.+..+|.++.+-++
T Consensus 215 ~~~e~~~~l~l~~-------~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ 287 (511)
T PF09787_consen 215 ESGELQEQLELLK-------AEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQ 287 (511)
T ss_pred HHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHH
Confidence 4455555555544 344556677777777766555666666666666444433443444466777777777777
Q ss_pred HHHHHhhhch
Q psy15551 186 ETLVRLRDLS 195 (640)
Q Consensus 186 eaLvrlRd~s 195 (640)
+-+-.|+..-
T Consensus 288 ee~~~l~~Qi 297 (511)
T PF09787_consen 288 EEIQLLERQI 297 (511)
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 251
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=63.01 E-value=2.2e+02 Score=30.98 Aligned_cols=72 Identities=28% Similarity=0.419 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCC
Q psy15551 88 RELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDG 162 (640)
Q Consensus 88 ~el~~~k~~~~e~~~~~e~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~ 162 (640)
.+...++++.+-+.+.-+. ++-+-.-.+=|--.-|-.+--|...|..+|..|+-|+-++-.+|.|+|.+..+
T Consensus 60 ~e~s~LkREnq~l~e~c~~---lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~ 131 (307)
T PF10481_consen 60 NEYSALKRENQSLMESCEN---LEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQA 131 (307)
T ss_pred hhhhhhhhhhhhHHHHHHH---HHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444333332 23333333444445566778889999999999999999999999999998654
No 252
>KOG0243|consensus
Probab=62.74 E-value=4.1e+02 Score=33.63 Aligned_cols=12 Identities=42% Similarity=0.437 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q psy15551 177 LEQQNMRLRETL 188 (640)
Q Consensus 177 le~qN~rLreaL 188 (640)
||-.|+-|++-|
T Consensus 189 LELYNEEl~DLL 200 (1041)
T KOG0243|consen 189 LELYNEELTDLL 200 (1041)
T ss_pred hhhhhHHHHHhc
Confidence 444555555544
No 253
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=61.72 E-value=2.7e+02 Score=32.54 Aligned_cols=95 Identities=16% Similarity=0.272 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 340 EKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQE 419 (640)
Q Consensus 340 ~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLEaLkELnDELEE 419 (640)
-+...+.+|.........+.....+.|..|+.+++.+- . .+..+.+++.+... .++-+.|||+-
T Consensus 417 ~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE---~-------ek~~l~eeL~~a~~------~i~~LqDEL~T 480 (518)
T PF10212_consen 417 YYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAE---K-------EKESLEEELKEANQ------NISRLQDELET 480 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-------HHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 34556666777667777777888888888888877652 2 22223333333333 34445566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 420 DAKEIEIELKEEVEMARSATREVIREKEAALESLA 454 (640)
Q Consensus 420 nhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLE 454 (640)
+..-++ ..|....-.+-.+..++..+.++|+
T Consensus 481 Tr~NYE----~QLs~MSEHLasmNeqL~~Q~eeI~ 511 (518)
T PF10212_consen 481 TRRNYE----EQLSMMSEHLASMNEQLAKQREEIQ 511 (518)
T ss_pred HHhhHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655554 3333444444444444444444444
No 254
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=61.58 E-value=1.2e+02 Score=27.21 Aligned_cols=92 Identities=16% Similarity=0.192 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHH----HHHHHHHHHH
Q psy15551 379 AEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQE---------------------DAKE----IEIELKEEVE 433 (640)
Q Consensus 379 AEEMVEELTEKNleLEEKIeELEetIeDLEaLkELnDELEE---------------------nhvE----~EKeLREELD 433 (640)
+...+..+..++..+...+.+++..++.++.+....++... .++. .+..+.+-++
T Consensus 11 l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve~~~~eA~~ 90 (129)
T cd00890 11 LQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVEKSLEEAIE 90 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEEecHHHHHH
Confidence 45566677777777777777777777777766543332211 0111 1155666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 434 MARSATREVIREKEAALESLADRELTIVKFRELVIRE 470 (640)
Q Consensus 434 ~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~L 470 (640)
+.+..+..+..++......+......+..++..++.+
T Consensus 91 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 91 FLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666667666666666666666666666666655543
No 255
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=61.04 E-value=3.8e+02 Score=32.65 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=27.7
Q ss_pred HHhhHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 58 KTRDLDEMKIQLD-QSAEFKAKIMESQAGLKRELEKLKQ 95 (640)
Q Consensus 58 k~~~l~~~~~~~~-~~~~~k~~~~~~~~~~~~el~~~k~ 95 (640)
++-++-+++++.. ...+|+..|..++.-|..|.+.+++
T Consensus 336 ~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~ 374 (786)
T PF05483_consen 336 QMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKK 374 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777664 5578888888888888777766655
No 256
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=61.01 E-value=1.8e+02 Score=28.93 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q psy15551 345 NAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAE-----EIVDLEALQVVSDQLQE 419 (640)
Q Consensus 345 ~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEe-----tIeDLEaLkELnDELEE 419 (640)
...|+.....+...+...++.|+.-..+|+.. .+....-.+.|..|.. .|.++-++...-+.+.+
T Consensus 17 ~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~----------~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~ 86 (158)
T PF09486_consen 17 ERRLRARLAAQRRALAAAEAELAEQQAEVEAA----------RQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVLEE 86 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHH
Confidence 33344444444445555555555544444432 3333334444444444 45666666666666766
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 420 DAKEIE---IELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAAL 475 (640)
Q Consensus 420 nhvE~E---KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLe 475 (640)
-+...+ ..++..+..+...|....+.|..+..+++-|...|...+-......++..
T Consensus 87 ~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~ea~~eda~ 145 (158)
T PF09486_consen 87 RVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAEAAAEDAQ 145 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhHHHhc
Confidence 666555 66778888888888888888888888888888888888877776666554
No 257
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=60.72 E-value=2.2e+02 Score=29.71 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q psy15551 355 LKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-----ALQVVSDQLQEDAKEIEIELK 429 (640)
Q Consensus 355 l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-----aLkELnDELEEnhvE~EKeLR 429 (640)
|.+.+.+++.+...++.. +..+....-.++.++.++...+.+++ +|.-=++.|-..-.+-...|.
T Consensus 29 l~Q~ird~~~~l~~ar~~----------~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le 98 (225)
T COG1842 29 LEQAIRDMESELAKARQA----------LAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLE 98 (225)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 334444455555544444 44444555566677777777777776 344444555555555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 430 EEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREK 471 (640)
Q Consensus 430 EELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQ 471 (640)
..+...+..+..+..........+..++..|.+++.....+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ 140 (225)
T COG1842 99 DLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALK 140 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666665555443
No 258
>KOG0018|consensus
Probab=60.07 E-value=4.6e+02 Score=33.36 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhh
Q psy15551 122 EMAEERAETLQVELDLAKEKIEELTLDIELMKADIEK 158 (640)
Q Consensus 122 emaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~ 158 (640)
+..+...+..=-+|=-++..+++++.+|..+++++..
T Consensus 209 e~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~ 245 (1141)
T KOG0018|consen 209 EKGKAQKEQFLWELFHVEACIEKANDELSRLNAEIPK 245 (1141)
T ss_pred HHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHH
Confidence 3334444444445555666777777777777776654
No 259
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=60.03 E-value=3.9e+02 Score=32.52 Aligned_cols=131 Identities=19% Similarity=0.276 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---HHHHHH
Q psy15551 354 KLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKE---IEIELK 429 (640)
Q Consensus 354 ~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE---~EKeLR 429 (640)
+.......++..|..|+-||..- ..-++.|-..|..|.-++..-...+.-++ .+..+..+++-.+.. ....++
T Consensus 584 ~k~kq~k~lenk~~~LrKqvEnk---~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~ 660 (786)
T PF05483_consen 584 KKEKQMKILENKCNNLRKQVENK---NKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQ 660 (786)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34445667788888888888855 44577888888888888887777777777 666666666665543 347788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhh--ccChhhHHhh
Q psy15551 430 EEVEMARSATREVIREKEAALESLAD-----------RELTIVKFRELVIREKEAALES--LADRELTIVK 487 (640)
Q Consensus 430 EELD~kdsqIrEL~rRIeq~eEqLED-----------lE~TIsKFRELV~~LQedLeEL--~~~~~~~~~~ 487 (640)
.+|+.+...-.++...++.......+ ++..|...-.+......+..-+ -.|.++--.+
T Consensus 661 keie~K~~~e~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALMEKHK~qYDkiVEEkDaEL~~~k 731 (786)
T PF05483_consen 661 KEIESKSISEEELLGEVEKAKLTADEAVKLQEETDLRCQHKIAEMVALMEKHKHQYDKIVEEKDAELGLYK 731 (786)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 88888888777777777665544332 3444444444444444444332 1355554443
No 260
>PF13166 AAA_13: AAA domain
Probab=59.87 E-value=3.3e+02 Score=31.64 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15551 391 LELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 391 leLEEKIeELEetIeDLE 408 (640)
..+...+.+++..|....
T Consensus 366 ~~l~~~i~~~n~~i~~~n 383 (712)
T PF13166_consen 366 DELNSIIDELNELIEEHN 383 (712)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 261
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=59.61 E-value=50 Score=28.07 Aligned_cols=15 Identities=13% Similarity=0.133 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy15551 394 EDLVSKQAEEIVDLE 408 (640)
Q Consensus 394 EEKIeELEetIeDLE 408 (640)
+++|.+|+..+.-++
T Consensus 3 e~Ri~~LE~~la~qe 17 (69)
T PF04102_consen 3 EERIEELEIKLAFQE 17 (69)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 262
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=59.52 E-value=5e+02 Score=33.55 Aligned_cols=147 Identities=17% Similarity=0.256 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHHHHHH-------HHHHHhhhhhhhhHHHHhhHHHHHHHHHhHHHHH
Q psy15551 4 EIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAK-------IMESQAASSLFRYREKTRDLDEMKIQLDQSAEFK 76 (640)
Q Consensus 4 e~~~l~~kl~~~~~k~~ek~~~~~~~~~ql~q~~~~k~k-------~~e~~~~~~~~~d~~k~~~l~~~~~~~~~~~~~k 76 (640)
.|.+|.+-++.|+.-+.. ++.++.....+..|... +....+. ++.....+++.++.++.....-.
T Consensus 221 ~i~~l~e~~~~~~~~~~~----le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 292 (1353)
T TIGR02680 221 ELTDVADALEQLDEYRDE----LERLEALERALRNFLQRYRRYARTMLRRRAT----RLRSAQTQYDQLSRDLGRARDEL 292 (1353)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666655544 44444455555554442 2222222 35555555666666555554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy15551 77 AKIMESQAGLKRELEKLKQEKQEAVEAKE-------------------DTADLVETLEMMTLDKEMAEERAETLQVELDL 137 (640)
Q Consensus 77 ~~~~~~~~~~~~el~~~k~~~~e~~~~~e-------------------~~~d~~~~lem~tldkemaee~~e~l~~el~~ 137 (640)
...++....++.++..+++++.++....+ ++.++...++-..-.-+=++.+.+.++.+++.
T Consensus 293 ~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~ 372 (1353)
T TIGR02680 293 ETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQAIREAESRLEEERRRLDE 372 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555544443333 11222222222222233344555556666666
Q ss_pred HHHHHHHHhhhHHHHHHhhhh
Q psy15551 138 AKEKIEELTLDIELMKADIEK 158 (640)
Q Consensus 138 ~k~k~eel~le~e~lk~e~e~ 158 (640)
+..+..+....++-..+++..
T Consensus 373 ~~~r~~~~~~~l~~~~~el~~ 393 (1353)
T TIGR02680 373 EAGRLDDAERELRAAREQLAR 393 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655555555443
No 263
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=59.39 E-value=2.3e+02 Score=29.59 Aligned_cols=66 Identities=26% Similarity=0.349 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy15551 76 KAKIMESQAGLKRELEKLKQEKQEAVEAKE----DTADLVETLEMMTLDKEMAEERAETLQVELDLAKEK 141 (640)
Q Consensus 76 k~~~~~~~~~~~~el~~~k~~~~e~~~~~e----~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k 141 (640)
+..+...+..+..+.+.|+.+.....+.++ ++.+....+.-+.-.++-.+..++.++.++..++..
T Consensus 49 a~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 49 AEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARED 118 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443333333 233333333333333444444444444444444443
No 264
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=59.30 E-value=1.6e+02 Score=27.74 Aligned_cols=56 Identities=20% Similarity=0.319 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy15551 366 CADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEI 424 (640)
Q Consensus 366 ~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~ 424 (640)
|.++...++..+. ..+.|.+.|++++.++.+++..+...- .++.+..++.+...+.
T Consensus 29 ~~~~~~~~~~l~~---~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~ 85 (150)
T PF07200_consen 29 VQELQQEREELLA---ENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQ 85 (150)
T ss_dssp -HHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444333 366677777777777777777776555 5666555555544433
No 265
>PRK10869 recombination and repair protein; Provisional
Probab=59.08 E-value=3.4e+02 Score=31.49 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q psy15551 132 QVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETL 188 (640)
Q Consensus 132 ~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaL 188 (640)
..+++.+..+..+..-+++.++-++++..... ..+..+..|+++-.+|..+-
T Consensus 170 ~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~-----l~~gE~eeL~~e~~~L~n~e 221 (553)
T PRK10869 170 CRDLAQHQQQSQERAARKQLLQYQLKELNEFA-----PQPGEFEQIDEEYKRLANSG 221 (553)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCC-----CCCCcHHHHHHHHHHHHHHH
Confidence 33444444444444555555555554433231 23445677888877776653
No 266
>KOG4603|consensus
Probab=58.91 E-value=2.2e+02 Score=29.24 Aligned_cols=91 Identities=14% Similarity=0.108 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q psy15551 381 EMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALE-------- 451 (640)
Q Consensus 381 EMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eE-------- 451 (640)
+.+..|..++..|++++..|..++.+.+ .+++++.-|.. .+++++|..++....+...|+....+
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~------eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpe 152 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTT------EEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPE 152 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 4466788899999999999999999999 88888877753 44555565555555655555554432
Q ss_pred ---HHH-HHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 452 ---SLA-DRELTIVKFRELVIREKEAALES 477 (640)
Q Consensus 452 ---qLE-DlE~TIsKFRELV~~LQedLeEL 477 (640)
++. .++..++.||..-+-..+-+..+
T Consensus 153 dk~~v~~~y~~~~~~wrk~krmf~ei~d~~ 182 (201)
T KOG4603|consen 153 DKEQVYREYQKYCKEWRKRKRMFREIIDKL 182 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 37778888888777666555544
No 267
>KOG1003|consensus
Probab=58.87 E-value=2.3e+02 Score=29.47 Aligned_cols=35 Identities=11% Similarity=0.188 Sum_probs=25.5
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 377 LGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQ 411 (640)
Q Consensus 377 ~gAEEMVEELTEKNleLEEKIeELEetIeDLEaLk 411 (640)
-..+-++.-|+.+++.+++++..++....+--.+-
T Consensus 42 dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~ia 76 (205)
T KOG1003|consen 42 DESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIA 76 (205)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34456677788888888888888888877765333
No 268
>PRK04325 hypothetical protein; Provisional
Probab=58.78 E-value=68 Score=27.85 Aligned_cols=23 Identities=26% Similarity=0.180 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 386 LSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 386 LTEKNleLEEKIeELEetIeDLE 408 (640)
++++..+|+.++.-.+.+|++|.
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN 29 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLN 29 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 269
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=58.42 E-value=97 Score=35.11 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 330 EMSKLQKDIEEKKQENAELIKSQEKLK 356 (640)
Q Consensus 330 ~~~~~~~~~e~~~~~~~~l~~~~~~l~ 356 (640)
++..++++|.++..+.+.+.....-+.
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~ 98 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALK 98 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444444333
No 270
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=58.37 E-value=1.1e+02 Score=32.34 Aligned_cols=39 Identities=8% Similarity=0.207 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy15551 380 EEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQ 418 (640)
Q Consensus 380 EEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELE 418 (640)
-.|+--+|.|......++.+|++++..+. .+..+..|+.
T Consensus 78 ~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~ 117 (248)
T PF08172_consen 78 SSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVE 117 (248)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888887776655 4444333333
No 271
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=58.06 E-value=1.2e+02 Score=26.51 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 380 EEMVQQLSVQKLELEDLVSKQAEEIVDLE--ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIR 444 (640)
Q Consensus 380 EEMVEELTEKNleLEEKIeELEetIeDLE--aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~r 444 (640)
+..|..|...|.+|.=+|.-|++.+.... ...++-.+.-+..++. ..|+.|+..+...+.++.+
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~-~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEV-ESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 55677788888888888887777777433 3333333333222222 3444455444444444443
No 272
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=57.92 E-value=2e+02 Score=34.90 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=18.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 378 GAEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 378 gAEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
..+.+++.|.++..+++++..+++....+++
T Consensus 512 ~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~ 542 (771)
T TIGR01069 512 EINVLIEKLSALEKELEQKNEHLEKLLKEQE 542 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666665555555
No 273
>KOG0979|consensus
Probab=57.00 E-value=5.1e+02 Score=32.84 Aligned_cols=97 Identities=15% Similarity=0.203 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhcHHHHHHHHHHHHHHH
Q psy15551 325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLH-----------EQVDAALGAEEMVQQLSVQKLEL 393 (640)
Q Consensus 325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~-----------~q~d~a~gAEEMVEELTEKNleL 393 (640)
+..|..+.++.+++..+..+...+....+.|+.+..+..++|.... +-+|-....+++|+.+...+..+
T Consensus 251 ~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~l 330 (1072)
T KOG0979|consen 251 NAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESL 330 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555554433 33344455677777777777777
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy15551 394 EDLVSKQAEEIVDLE-ALQVVSDQLQEDA 421 (640)
Q Consensus 394 EEKIeELEetIeDLE-aLkELnDELEEnh 421 (640)
..+-.....+|...- .+-++.++|...+
T Consensus 331 k~~~~~rq~~i~~~~k~i~~~q~el~~~~ 359 (1072)
T KOG0979|consen 331 KKAAEKRQKRIEKAKKMILDAQAELQETE 359 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 666666666666555 5666666665544
No 274
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=56.94 E-value=77 Score=32.56 Aligned_cols=47 Identities=21% Similarity=0.368 Sum_probs=33.5
Q ss_pred ChhhHHHHHHHHHHHHHHhhhh---h-hhhhHHHHHhhhhHHHHHHHHHHH
Q psy15551 1 MKAEIQDLKEKLDTMKIKYREK---T-RDLDEMKIQLDQSAEFKAKIMESQ 47 (640)
Q Consensus 1 ~~~e~~~l~~kl~~~~~k~~ek---~-~~~~~~~~ql~q~~~~k~k~~e~~ 47 (640)
|+.|+.+|.+||.-.+.+-... . -...=+|-||+|+.++|...+-..
T Consensus 101 LkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~ 151 (195)
T PF12761_consen 101 LKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLREL 151 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678888888888777665441 1 123446889999999999776554
No 275
>PRK02793 phi X174 lysis protein; Provisional
Probab=56.65 E-value=82 Score=27.21 Aligned_cols=28 Identities=11% Similarity=0.166 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy15551 393 LEDLVSKQAEEIVDLE-ALQVVSDQLQED 420 (640)
Q Consensus 393 LEEKIeELEetIeDLE-aLkELnDELEEn 420 (640)
++++|.+|+..+.-.+ .+.++|+.+...
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Q 34 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAH 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555 444445544443
No 276
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=56.46 E-value=3.7e+02 Score=31.13 Aligned_cols=13 Identities=23% Similarity=0.161 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q psy15551 456 RELTIVKFRELVI 468 (640)
Q Consensus 456 lE~TIsKFRELV~ 468 (640)
+..+|..|+..|.
T Consensus 145 l~e~l~~f~~~v~ 157 (475)
T PRK10361 145 LREQLDGFRRQVQ 157 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444333
No 277
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=56.17 E-value=75 Score=31.26 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhh
Q psy15551 124 AEERAETLQVELDLAKEKIEELTLDIELMKADIEK 158 (640)
Q Consensus 124 aee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~ 158 (640)
-.+....+..|++.++.+++..+.|++.||...+.
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777778888888888888888876654
No 278
>KOG4001|consensus
Probab=56.17 E-value=1.2e+02 Score=31.74 Aligned_cols=73 Identities=26% Similarity=0.306 Sum_probs=42.0
Q ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 375 AALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEI-EIELKEEVEMARSATREVIREKE 447 (640)
Q Consensus 375 ~a~gAEEMVEELTEKNleLEEKIeELEetIeDLEaLkELnDELEEnhvE~-EKeLREELD~kdsqIrEL~rRIe 447 (640)
-||-++..-..++.+...|+.+-.+|+..|.++..-.+..+--++-..+. |+.+.++|.++....+.+..+++
T Consensus 179 KALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~eei~fLk~tN~qLKaQLe 252 (259)
T KOG4001|consen 179 KALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEEIEFLKETNRQLKAQLE 252 (259)
T ss_pred HHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555555555555555566666666666666552222233223333333 48889999998887776666554
No 279
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=56.07 E-value=3.2e+02 Score=30.30 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 429 KEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREK 471 (640)
Q Consensus 429 REELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQ 471 (640)
++.+......|.++-.+|...+...+..|.+|...-.-+..|.
T Consensus 56 ~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD 98 (383)
T PF04100_consen 56 EEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLD 98 (383)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555544444444433333333
No 280
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=55.85 E-value=2.2e+02 Score=28.31 Aligned_cols=93 Identities=11% Similarity=0.112 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 383 VQQLSVQKLELEDLVSKQAEEIVDLE--ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTI 460 (640)
Q Consensus 383 VEELTEKNleLEEKIeELEetIeDLE--aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TI 460 (640)
|+.|..+-....-++.+....+.... .+++.-++-...++.+- -++++-..+...-.++.+++..+...++..+..+
T Consensus 50 vD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~-~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~ 128 (159)
T PF05384_consen 50 VDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLA-MLREREKQLRERRDELERRLRNLEETIERAENLV 128 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555554333 34444444433333332 1222222333333344444444444444444444
Q ss_pred HHHHHHHHHHHHHHHh
Q psy15551 461 VKFRELVIREKEAALE 476 (640)
Q Consensus 461 sKFRELV~~LQedLeE 476 (640)
++..=.+.=|..++..
T Consensus 129 sqi~vvl~yL~~dl~~ 144 (159)
T PF05384_consen 129 SQIGVVLNYLSGDLQQ 144 (159)
T ss_pred HHHHHHHHHHHhhHHH
Confidence 4444444444444443
No 281
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=55.70 E-value=32 Score=37.77 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=9.7
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q psy15551 377 LGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVS 414 (640)
Q Consensus 377 ~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELn 414 (640)
+..+.+...++.....|..+|.++++.|.++| .+.++.
T Consensus 126 ~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~ 164 (370)
T PF02994_consen 126 LEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIE 164 (370)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 33333333333333344555555555555555 443333
No 282
>KOG0972|consensus
Probab=55.24 E-value=3.3e+02 Score=30.15 Aligned_cols=63 Identities=14% Similarity=0.289 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy15551 123 MAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSAH 197 (640)
Q Consensus 123 maee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvrlRd~s~~ 197 (640)
-+.|+-..+++-+..-.+-+.|.-.|+|.+|.|+|+.+.. ++.+ +|. -+.|.|+.+|.+=+++
T Consensus 291 e~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~-msDG--apl---------vkIkqavsKLk~et~~ 353 (384)
T KOG0972|consen 291 ELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAK-MSDG--APL---------VKIKQAVSKLKEETQT 353 (384)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccCC--chH---------HHHHHHHHHHHHHHHh
Confidence 3456666666666666777788889999999999996544 2222 232 1345566666666543
No 283
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=55.20 E-value=2.4e+02 Score=28.66 Aligned_cols=39 Identities=41% Similarity=0.497 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 327 EKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQ 372 (640)
Q Consensus 327 ~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q 372 (640)
...++.++.+.+++...++.+ +.....+++..+-.|+++
T Consensus 108 ~~e~~k~le~~~~~~~~~~~~-------~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 108 LLEERKKLEKKIEEKEAELKE-------LESEIKELEMKILELQRQ 146 (190)
T ss_pred HHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHHHH
Confidence 334444555555544333333 333344444444444444
No 284
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=54.61 E-value=2e+02 Score=27.52 Aligned_cols=87 Identities=18% Similarity=0.294 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----h-------cHHHHHHHHHHHHHHHHHHHH
Q psy15551 331 MSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAA-----L-------GAEEMVQQLSVQKLELEDLVS 398 (640)
Q Consensus 331 ~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a-----~-------gAEEMVEELTEKNleLEEKIe 398 (640)
++..-...-.+.++...+.-.+.++...|.+.+....+|..-=|++ . .-++.+.+|.++...|+-+|.
T Consensus 8 ~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~ 87 (119)
T COG1382 8 VQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIK 87 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555666666666666666666666666554322222 1 123444444444444444444
Q ss_pred HHHHHHHHHH-HHHHHHHHH
Q psy15551 399 KQAEEIVDLE-ALQVVSDQL 417 (640)
Q Consensus 399 ELEetIeDLE-aLkELnDEL 417 (640)
.|+..-+.+. .|.++..+|
T Consensus 88 tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 88 TLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 4444444444 444443333
No 285
>KOG0288|consensus
Probab=54.46 E-value=2.9e+02 Score=31.75 Aligned_cols=62 Identities=19% Similarity=0.281 Sum_probs=46.3
Q ss_pred hhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 309 IFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVD 374 (640)
Q Consensus 309 ~~~~~~~~~~~l~d~~~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d 374 (640)
.+..|+..+.++ ....++++.-.+.......++.-+....+.++.+++..|..+.+|++..+
T Consensus 4 ~~s~~s~~dqr~----~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~ 65 (459)
T KOG0288|consen 4 LYSQKSENDQRL----IDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENT 65 (459)
T ss_pred hhhhhhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777 44455666666777777888888888888888888999998888887654
No 286
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=54.04 E-value=3.1e+02 Score=29.89 Aligned_cols=7 Identities=29% Similarity=0.159 Sum_probs=4.4
Q ss_pred HHHHHhh
Q psy15551 532 DYVKILS 538 (640)
Q Consensus 532 Llf~RLa 538 (640)
+++++++
T Consensus 219 vRLkKl~ 225 (302)
T PF09738_consen 219 VRLKKLA 225 (302)
T ss_pred HHHHHHH
Confidence 4566666
No 287
>KOG1899|consensus
Probab=54.01 E-value=4.8e+02 Score=31.66 Aligned_cols=75 Identities=29% Similarity=0.400 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q psy15551 331 MSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQ-------LSVQKLELEDLVSKQAEE 403 (640)
Q Consensus 331 ~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEE-------LTEKNleLEEKIeELEet 403 (640)
+.+|+-|-|.+.=+..-|....+.-..++..+|.-|+.-++++.+ .|+|+.+ |..++++|=.+|.+|+-.
T Consensus 113 LaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLna---tEEmLQqellsrtsLETqKlDLmaevSeLKLk 189 (861)
T KOG1899|consen 113 LARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNA---TEEMLQQELLSRTSLETQKLDLMAEVSELKLK 189 (861)
T ss_pred HHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhch---HHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHH
Confidence 344444444444445555555555556666677666666666654 3555543 555555555555555544
Q ss_pred HHHHH
Q psy15551 404 IVDLE 408 (640)
Q Consensus 404 IeDLE 408 (640)
+.-+|
T Consensus 190 ltalE 194 (861)
T KOG1899|consen 190 LTALE 194 (861)
T ss_pred HHHHH
Confidence 44333
No 288
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=53.87 E-value=3.7e+02 Score=30.25 Aligned_cols=61 Identities=13% Similarity=0.124 Sum_probs=33.3
Q ss_pred CCccchhhhhhhccccccccch-----hhHHHHHHHHHHHhhhhcCCCCCCCcCCccccchhhHHhhhhHH
Q psy15551 561 PCECYSLFLHSYGNEIGREGST-----ENIEKCVTYFNTFYPVLFPGHPSFSSCGSLLMDYVKILSTACDC 626 (640)
Q Consensus 561 ~~~~~~l~~~~~~~~l~~~~~~-----E~FEKI~~YFn~IFsvLFgGG~A~~~~~L~LtD~~dvL~SGIEI 626 (640)
+...|+|-..+-.|-|.++..- .+.+.=..|=|..|+.++|=|. +-.+.+..++.-+|+.=
T Consensus 277 svhnysLdcRrLfDsLreEnlgmlfVYs~k~qRllFAN~~fk~wtGy~~-----edFl~~~~dIV~eGl~q 342 (401)
T PF06785_consen 277 SVHNYSLDCRRLFDSLREENLGMLFVYSPKSQRLLFANSQFKTWTGYSS-----EDFLKDFSDIVQEGLAQ 342 (401)
T ss_pred ccccchHHHHHHHhhhcccccceEEEecchhhHHHHhHHHHHHHhccCH-----HHHHhcchHHHHhhHHH
Confidence 3445566555556666665432 2455555666777888887444 23344444444555443
No 289
>PRK02119 hypothetical protein; Provisional
Probab=53.86 E-value=91 Score=27.04 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15551 386 LSVQKLELEDLVSKQAEEIVDL 407 (640)
Q Consensus 386 LTEKNleLEEKIeELEetIeDL 407 (640)
+.++..+|+.++.-.+.+|++|
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~L 28 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEEL 28 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 290
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=53.78 E-value=2.7e+02 Score=28.65 Aligned_cols=73 Identities=25% Similarity=0.338 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 327 EKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVD 406 (640)
Q Consensus 327 ~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeD 406 (640)
-+..+.+|.+.|+.....-.+..+... ...+..+..+.+.|..- ...+++.+......|.+++..|...|.+
T Consensus 39 i~e~i~~Le~~l~~E~k~R~E~~~~lq------~~~e~~i~~~~~~v~~~--~~~~~~~~~~~l~~L~~ri~~L~~~i~e 110 (247)
T PF06705_consen 39 IKEQIQKLEKALEAEVKRRVESNKKLQ------SKFEEQINNMQERVENQ--ISEKQEQLQSRLDSLNDRIEALEEEIQE 110 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555443333333222221 22445555555544322 2234555555555555555555544444
Q ss_pred H
Q psy15551 407 L 407 (640)
Q Consensus 407 L 407 (640)
.
T Consensus 111 e 111 (247)
T PF06705_consen 111 E 111 (247)
T ss_pred H
Confidence 3
No 291
>KOG1853|consensus
Probab=53.56 E-value=3.3e+02 Score=29.61 Aligned_cols=29 Identities=17% Similarity=0.332 Sum_probs=17.6
Q ss_pred CCCccchhhhhhhccccccccchhhHHHH
Q psy15551 560 MPCECYSLFLHSYGNEIGREGSTENIEKC 588 (640)
Q Consensus 560 ~~~~~~~l~~~~~~~~l~~~~~~E~FEKI 588 (640)
.+..|.+-++...|-...+.+|+-.+.++
T Consensus 284 g~g~~~~~i~~d~gtk~~rs~si~~~dkv 312 (333)
T KOG1853|consen 284 GAGACINRIVKDLGTKVERSDSILSTDKV 312 (333)
T ss_pred ccchhhhhhhccccccccccCcccccccc
Confidence 33344444666666777777777766663
No 292
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=53.54 E-value=4.2e+02 Score=30.81 Aligned_cols=28 Identities=32% Similarity=0.278 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 120 DKEMAEERAETLQVELDLAKEKIEELTL 147 (640)
Q Consensus 120 dkemaee~~e~l~~el~~~k~k~eel~l 147 (640)
|=.=|.+-...++.++..++..++.+=-
T Consensus 188 D~~~A~eil~~l~~~~~~l~~~~e~IP~ 215 (560)
T PF06160_consen 188 DYLEAREILEKLKEETDELEEIMEDIPK 215 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4455666667777777666666655443
No 293
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=53.24 E-value=1.8e+02 Score=26.62 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy15551 379 AEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQ 418 (640)
Q Consensus 379 AEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELE 418 (640)
..+-++-+..+...|++.+.+++..+..+. .+..+...+.
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~ 125 (129)
T cd00584 85 LEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666655555 4544444443
No 294
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=53.06 E-value=77 Score=31.75 Aligned_cols=52 Identities=33% Similarity=0.436 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15551 325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAA 376 (640)
Q Consensus 325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a 376 (640)
.+.+++.++++.++.++.+.+..|.+..++|.+++...+.+...|-..+|-|
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777778888888888888888888888877777777777666654
No 295
>KOG4677|consensus
Probab=53.02 E-value=4.3e+02 Score=30.80 Aligned_cols=154 Identities=17% Similarity=0.099 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHhhh--hHHHHHHHHHHHh-hhhhhhhHHH----HhhHHHHHHHHHhHHHHHHH
Q psy15551 6 QDLKEKLDTMKIKYREKTRDLDEMKIQLDQ--SAEFKAKIMESQA-ASSLFRYREK----TRDLDEMKIQLDQSAEFKAK 78 (640)
Q Consensus 6 ~~l~~kl~~~~~k~~ek~~~~~~~~~ql~q--~~~~k~k~~e~~~-~~~~~~d~~k----~~~l~~~~~~~~~~~~~k~~ 78 (640)
+.+-|-+..-+.++-+-.|++|+.|.+++- +..=|.+..++.. .--..-+.+| -.++++.+-+++-.++=-++
T Consensus 248 rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~ 327 (554)
T KOG4677|consen 248 RNELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHLIIQSPDKSTASRKEFEETRVELPFSAEDSAH 327 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHhcccccHHHHHH
Confidence 333444444445555555555555555444 3333333333321 1111123334 45666666666665555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhh
Q psy15551 79 IMESQAGLKRELEKLKQEKQEAVEAKE-DTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIE 157 (640)
Q Consensus 79 ~~~~~~~~~~el~~~k~~~~e~~~~~e-~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e 157 (640)
||-..--|.++++++..+.+..+++-. ++.++. .+....+.-+.+|++.+|-++-|.+
T Consensus 328 ~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h---------------------~~ka~~~~~~~~l~~~~ec~~~e~e 386 (554)
T KOG4677|consen 328 IQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKH---------------------PRKASILNMPLVLTLFYECFYHETE 386 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhh---------------------hHhhhhhhchHHHHHHHHHHHHHHH
Confidence 555555555555555444443332221 222221 1222334446778888888887766
Q ss_pred hhcCCCCCCCCcchHHHHHHHHHHH
Q psy15551 158 KSCDGAGDGTEVSHYQIKQLEQQNM 182 (640)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~qle~qN~ 182 (640)
-.... ........|.+-++++|+
T Consensus 387 ~~~~~--~~r~~~~~qski~dk~~e 409 (554)
T KOG4677|consen 387 AEGTF--SSRVNLKKQSKIPDKQYE 409 (554)
T ss_pred Hhhhh--hhhccchhhccCcchHHH
Confidence 53221 223345667777788775
No 296
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=52.91 E-value=1.7e+02 Score=26.25 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy15551 379 AEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQE 419 (640)
Q Consensus 379 AEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEE 419 (640)
.++-++.+..+...++..+..++..+..+. .+..+...++.
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666 56555555543
No 297
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=52.85 E-value=1.6e+02 Score=33.46 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHH
Q psy15551 362 LEADCADLHEQVDAALGAEEMVQQL 386 (640)
Q Consensus 362 ~e~~~~~l~~q~d~a~gAEEMVEEL 386 (640)
++..++.+..+++++-....+++.+
T Consensus 83 l~~~~~~~~~~~~~~~~~~~~l~~~ 107 (525)
T TIGR02231 83 LEAELRDLEDRGDALKALAKFLEDI 107 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 298
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=52.79 E-value=1.6e+02 Score=25.73 Aligned_cols=48 Identities=23% Similarity=0.296 Sum_probs=21.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 322 DLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQ 372 (640)
Q Consensus 322 d~~~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q 372 (640)
++|.+.-.-+..|+++-+. ...+...++..|...++.....-+.|.+|
T Consensus 3 eLE~qLl~ale~Lq~~y~~---q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~q 50 (70)
T PF04899_consen 3 ELEKQLLSALEELQQSYEK---QQQEWQSSYADLQHMFEQTSQENAALSEQ 50 (70)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3444544455555555432 23334444444444444444444433333
No 299
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=52.51 E-value=2.6e+02 Score=28.17 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 351 SQEKLKQRVTELEADCADLHEQVD 374 (640)
Q Consensus 351 ~~~~l~~kL~~~e~~~~~l~~q~d 374 (640)
-..+|..++.+....|++|..|+-
T Consensus 17 Lv~~LQ~KV~qYr~rc~ele~~l~ 40 (182)
T PF15035_consen 17 LVQRLQAKVLQYRKRCAELEQQLS 40 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344677888888889999988883
No 300
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=51.86 E-value=3.7e+02 Score=29.75 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 378 GAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALES 452 (640)
Q Consensus 378 gAEEMVEELTEKNleLEEKIeELEetIeDLEaLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEq 452 (640)
.+...+..|+..|..|+..+..+...+++ +-...++++ .++-..+.-=|..+...|+++++.+...+..
T Consensus 141 ~l~~~~~~L~~enerL~~e~~~~~~qlE~---~v~~K~~~E---~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~ 209 (342)
T PF06632_consen 141 RLQAENEHLQKENERLESEANKLLKQLEK---FVNAKEEHE---EDLYAKFVLVLNEKKAKIRELQRLLASAKEE 209 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHhhcc
Confidence 33344445555555555555444433333 222222222 2333555666777888888888877776653
No 301
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=51.15 E-value=3.7e+02 Score=29.46 Aligned_cols=119 Identities=13% Similarity=0.195 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 327 EKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVD 406 (640)
Q Consensus 327 ~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeD 406 (640)
.=+.|+.++..++.++.+...-+- .+..+|+...--+..|+.. ...+..|.-.|..|-+....|+.+-.
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQf-------QleSlEAaLqKQKqK~e~e---k~e~s~LkREnq~l~e~c~~lek~rq- 84 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQF-------QLESLEAALQKQKQKVEEE---KNEYSALKRENQSLMESCENLEKTRQ- 84 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH---hhhhhhhhhhhhhHHHHHHHHHHHHH-
Confidence 334555566666655555443222 2333444444444444322 12233445555555555544444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15551 407 LEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALE 476 (640)
Q Consensus 407 LEaLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeE 476 (640)
.|..++..++.++.-+..++......++.++..|.+++..+...|.....
T Consensus 85 --------------------Klshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~ 134 (307)
T PF10481_consen 85 --------------------KLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASS 134 (307)
T ss_pred --------------------HhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34567788888889999999999999999999999999999988887763
No 302
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=50.95 E-value=3e+02 Score=28.44 Aligned_cols=31 Identities=3% Similarity=-0.046 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15551 446 KEAALESLADRELTIVKFRELVIREKEAALE 476 (640)
Q Consensus 446 Ieq~eEqLEDlE~TIsKFRELV~~LQedLeE 476 (640)
......-.......+++|...+..++.-+.+
T Consensus 173 ~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~e 203 (264)
T PF06008_consen 173 QQENESLAEAIRDDLNDYNAKLQDLRDLLNE 203 (264)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555555666666655555554
No 303
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=50.40 E-value=2.9e+02 Score=30.06 Aligned_cols=10 Identities=30% Similarity=0.667 Sum_probs=5.3
Q ss_pred HHHhhhchhh
Q psy15551 188 LVRLRDLSAH 197 (640)
Q Consensus 188 LvrlRd~s~~ 197 (640)
-||||.|-.+
T Consensus 17 ~iRmreLErq 26 (302)
T PF09738_consen 17 EIRMRELERQ 26 (302)
T ss_pred HHHHHHHHHH
Confidence 3566666544
No 304
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=50.37 E-value=2.7e+02 Score=27.65 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 381 EMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 381 EMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
+.++.+..+|...+.++..|++....|.
T Consensus 36 E~Le~~~~~n~~~~~e~~~L~~d~e~L~ 63 (158)
T PF09744_consen 36 ELLESLASRNQEHEVELELLREDNEQLE 63 (158)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 3456677777777777777877777776
No 305
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=50.10 E-value=4.5e+02 Score=30.18 Aligned_cols=78 Identities=17% Similarity=0.264 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 331 MSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAA----LGAEEMVQQLSVQKLELEDLVSKQAEEIVD 406 (640)
Q Consensus 331 ~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a----~gAEEMVEELTEKNleLEEKIeELEetIeD 406 (640)
+..+..+++.-..+..+....-++..++++..-.+-.-.++++++| +.+...+-.++++-.+|..++..|-+....
T Consensus 83 lr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~q 162 (499)
T COG4372 83 LRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQ 162 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555566666666666667766666666666666655 456677888888888898888888888888
Q ss_pred HH
Q psy15551 407 LE 408 (640)
Q Consensus 407 LE 408 (640)
++
T Consensus 163 l~ 164 (499)
T COG4372 163 LE 164 (499)
T ss_pred HH
Confidence 77
No 306
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=50.08 E-value=3.8e+02 Score=29.33 Aligned_cols=54 Identities=26% Similarity=0.313 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHH
Q psy15551 126 ERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRET 187 (640)
Q Consensus 126 e~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLrea 187 (640)
+++-.+..+.+..-.++.+|-.++.-++.....+..|++ .+..|+....||.-.
T Consensus 69 eev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~--------~~~~ler~i~~Le~~ 122 (294)
T COG1340 69 EEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGR--------SIKSLEREIERLEKK 122 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC--------CHHHHHHHHHHHHHH
Confidence 445566677777777777777777777776665432212 236677766666544
No 307
>PF15456 Uds1: Up-regulated During Septation
Probab=49.97 E-value=2.4e+02 Score=26.94 Aligned_cols=80 Identities=18% Similarity=0.176 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 380 EEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAK----------EIEIELKEEVEMARSATREVIREKEA 448 (640)
Q Consensus 380 EEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhv----------E~EKeLREELD~kdsqIrEL~rRIeq 448 (640)
.+.|++|+.+...|..+|+-++.++. ++ .+++.-.-+..... +.-..-.+++...+..+.++..++..
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~ 99 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWK 99 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 37799999999999999999999999 66 88887777766522 22233345555555555555555555
Q ss_pred HHHHHHHHHHHH
Q psy15551 449 ALESLADRELTI 460 (640)
Q Consensus 449 ~eEqLEDlE~TI 460 (640)
.+.+.......+
T Consensus 100 le~R~~~~~~rL 111 (124)
T PF15456_consen 100 LENRLAEVRQRL 111 (124)
T ss_pred HHHHHHHHHHHH
Confidence 555555444433
No 308
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=49.31 E-value=6.3e+02 Score=31.65 Aligned_cols=45 Identities=11% Similarity=0.086 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 426 IELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIRE 470 (640)
Q Consensus 426 KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~L 470 (640)
..+...+......+.++..++......+...+....++..+...+
T Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 869 (1047)
T PRK10246 825 EQIQQELAQLAQQLRENTTRQGEIRQQLKQDADNRQQQQALMQQI 869 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666666666666666666665555555444444444333
No 309
>KOG0982|consensus
Probab=49.11 E-value=4.8e+02 Score=30.23 Aligned_cols=187 Identities=18% Similarity=0.118 Sum_probs=0.0
Q ss_pred cccchhhhhhhhhhhhcccccch---hhhhhhhhhhhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 277 NKFDSRLRDLSAHEIFNNNKFDS---RLRDLSAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQE 353 (640)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~d~~~~~k~~~~~~~~~~e~~~~~~~~l~~~~~ 353 (640)
|.-.+|++.-|. ||++.|.+ -..|+...-+-.+..-++.++ ..|++...++..-.+--.....
T Consensus 181 nsptkriss~~~---~nssg~ssn~~~tedl~~e~mee~r~di~~kv-----------~flerkv~eledd~~~~gd~~S 246 (502)
T KOG0982|consen 181 NSPTKRISSSSS---FNSSGKSSNKLETEDLLVEGMEEERIDIERKV-----------RFLERKVQELEDDQNIAGDRSS 246 (502)
T ss_pred Cchhhhhhhhhh---cccccccccccchhhhhhhhhhchhhhHHHHH-----------HHHHHHHHHhhcchhccccchh
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-----
Q psy15551 354 KLKQRVTELEADCADLHEQV-DAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE--ALQVVSDQLQEDAKEIE----- 425 (640)
Q Consensus 354 ~l~~kL~~~e~~~~~l~~q~-d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE--aLkELnDELEEnhvE~E----- 425 (640)
+++++...+...+-.|.||+ +.-+-++++|.+=+.+..++.-+++--.+.-.+.. .++.+..+-.+.+..+.
T Consensus 247 rlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl 326 (502)
T KOG0982|consen 247 RLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSL 326 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 426 -IELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALES 477 (640)
Q Consensus 426 -KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL 477 (640)
..|-++.....-.|..+.-++...+.--..+-..+.+|.+.-...++-++++
T Consensus 327 ~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieel 379 (502)
T KOG0982|consen 327 ADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEEL 379 (502)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
No 310
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=49.08 E-value=2.8e+02 Score=27.45 Aligned_cols=90 Identities=14% Similarity=0.194 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cChhhHHhhHHhhhhhhhhc------
Q psy15551 427 ELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESL--ADRELTIVKFRELNSLDEKV------ 498 (640)
Q Consensus 427 eLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL~--~~~~~~~~~~sasKA~~k~I------ 498 (640)
....++..+...+..+...-......+...+..|......+..++.+.+... .-.++-.+.....+.+...+
T Consensus 139 ~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~ 218 (236)
T PF09325_consen 139 NAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAES 218 (236)
T ss_pred HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444333223345555566666666666666666555441 11112111111111111111
Q ss_pred chHHHHHHHhHhHhhcCC
Q psy15551 499 STENIEKCVTYFNTFYPV 516 (640)
Q Consensus 499 EaeqA~~hl~~l~~FLPd 516 (640)
..+...+.+..|..|+|.
T Consensus 219 ~i~~~~~~~~~We~~~~~ 236 (236)
T PF09325_consen 219 QIEYQKKMLEAWETFLPE 236 (236)
T ss_pred HHHHHHHHHHHHHhHccC
Confidence 577788999999999995
No 311
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=48.96 E-value=2.4e+02 Score=26.70 Aligned_cols=77 Identities=25% Similarity=0.305 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 326 HEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIV 405 (640)
Q Consensus 326 ~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIe 405 (640)
..|+....|.++-+.+..-+..|..+.....+++.++++.|+++..+|| .-..-.++|+-++...+-...
T Consensus 27 ~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le----------~eK~ak~~l~~r~~k~~~dka 96 (107)
T PF09304_consen 27 DEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE----------DEKQAKLELESRLLKAQKDKA 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhhh
Confidence 3455555555555555555555555444444444444444444444443 233344556666666666666
Q ss_pred HHH-HHHH
Q psy15551 406 DLE-ALQV 412 (640)
Q Consensus 406 DLE-aLkE 412 (640)
-+| .|-+
T Consensus 97 ~lel~l~e 104 (107)
T PF09304_consen 97 ILELKLAE 104 (107)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 665 4433
No 312
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=48.28 E-value=1.8e+02 Score=25.17 Aligned_cols=51 Identities=20% Similarity=0.417 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDA 375 (640)
Q Consensus 325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~ 375 (640)
++--..|..|..+-+.+....-.+..+.-+|+.+..+++..+..|+..++.
T Consensus 8 ~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~ 58 (74)
T PF12329_consen 8 AEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEE 58 (74)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456778888888887777778888888888888888888888766553
No 313
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=48.06 E-value=2.4e+02 Score=26.45 Aligned_cols=55 Identities=31% Similarity=0.366 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhh-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 353 EKLKQRVTELEADCADLHEQV---DAAL-GAEEMVQQLSVQKLELEDLVSKQAEEIVDL 407 (640)
Q Consensus 353 ~~l~~kL~~~e~~~~~l~~q~---d~a~-gAEEMVEELTEKNleLEEKIeELEetIeDL 407 (640)
..|+.-+-+-.+...+|+++| |+++ -++..++.|+=+|..|.-+|+.|...++..
T Consensus 15 ~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 15 QVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444 2222 345666778999999999999998887743
No 314
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=47.97 E-value=2.1e+02 Score=25.79 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=22.5
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy15551 369 LHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSD 415 (640)
Q Consensus 369 l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnD 415 (640)
+..++.++.+- +.-|..-|..-..++.++.....++. .+.+++.
T Consensus 12 v~~el~~t~~d---~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~ 56 (99)
T PF10046_consen 12 VESELEATNED---YNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQ 56 (99)
T ss_pred HHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443333 33444555566666666666666665 4444333
No 315
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=47.83 E-value=3.8e+02 Score=28.74 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 346 AELIKSQEKLKQRVTELEADCADLHEQ 372 (640)
Q Consensus 346 ~~l~~~~~~l~~kL~~~e~~~~~l~~q 372 (640)
.-+.+...+++.++..++..+.+.+.+
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l~~fr~~ 199 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAELLKYQIK 199 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555556666667777777666664
No 316
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.77 E-value=1.2e+02 Score=26.94 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy15551 391 LELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKE 423 (640)
Q Consensus 391 leLEEKIeELEetIeDLE-aLkELnDELEEnhvE 423 (640)
+.++++|.+|+..+..-| .|.++|+.+.+....
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~ 37 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLV 37 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777 677777777665443
No 317
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=47.48 E-value=4e+02 Score=28.85 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy15551 175 KQLEQQNMRLRETLVRLRD 193 (640)
Q Consensus 175 ~qle~qN~rLreaLvrlRd 193 (640)
+.|..+|..|++--.++-+
T Consensus 81 RELQk~Nk~lkeE~~~~~~ 99 (309)
T PF09728_consen 81 RELQKQNKKLKEESKRRAR 99 (309)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4588999999987776644
No 318
>KOG1962|consensus
Probab=47.24 E-value=93 Score=32.46 Aligned_cols=41 Identities=15% Similarity=0.307 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHH
Q psy15551 354 KLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLV 397 (640)
Q Consensus 354 ~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKI 397 (640)
+...+|..++.++..|+-|.+ |.......|.+++..|+++|
T Consensus 169 ~~~~~Le~~~~~~~al~Kq~e---~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 169 KKQKKLEKAQKKVDALKKQSE---GLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HcccHHHHHHHHHHHHHHHH
Confidence 333344444444444444443 22333444444444444444
No 319
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=46.87 E-value=3.3e+02 Score=27.66 Aligned_cols=82 Identities=21% Similarity=0.170 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 383 VQQLSVQKLELEDLVSKQAEEIVDLE-----ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRE 457 (640)
Q Consensus 383 VEELTEKNleLEEKIeELEetIeDLE-----aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE 457 (640)
|.........++.++.++...+.+++ +|..=++.|-..-.+-.......+.....++..+...+..+...+.+++
T Consensus 47 lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~ 126 (219)
T TIGR02977 47 SARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQ 126 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566666777777777766 2333333333333332233333343334444444444444444444444
Q ss_pred HHHHHHH
Q psy15551 458 LTIVKFR 464 (640)
Q Consensus 458 ~TIsKFR 464 (640)
..|..++
T Consensus 127 ~ki~~~k 133 (219)
T TIGR02977 127 AKLAEAR 133 (219)
T ss_pred HHHHHHH
Confidence 4443333
No 320
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=46.81 E-value=1.9e+02 Score=33.35 Aligned_cols=72 Identities=18% Similarity=0.317 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEI 404 (640)
Q Consensus 325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetI 404 (640)
.+.+.+++.+.++.+.++.||..|++....+.+++..+-.- -+. .+....++|..+...+...+..|...+
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~---~~~------~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQS---ETQ------ELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh---hhH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677788888888888888888888777776666554322 111 122345555666666666666666655
Q ss_pred H
Q psy15551 405 V 405 (640)
Q Consensus 405 e 405 (640)
.
T Consensus 140 ~ 140 (472)
T TIGR03752 140 A 140 (472)
T ss_pred h
Confidence 4
No 321
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=46.41 E-value=48 Score=30.77 Aligned_cols=53 Identities=32% Similarity=0.559 Sum_probs=28.8
Q ss_pred hhhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 308 EIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEA 364 (640)
Q Consensus 308 ~~~~~~~~~~~~l~d~~~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~ 364 (640)
+||+.=+.|..+| ...-.++..|.+.+.++-.||+.|.-..+.|..+|.+.+.
T Consensus 5 ~l~~~l~~le~~l----~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQL----GQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555444555555 2233345555566666666666666666666665555544
No 322
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=46.29 E-value=2e+02 Score=24.98 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q psy15551 381 EMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVS 414 (640)
Q Consensus 381 EMVEELTEKNleLEEKIeELEetIeDLE-aLkELn 414 (640)
+.|+.+..+..++...-..|..+|..+. .|++++
T Consensus 14 P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~ 48 (92)
T PF14712_consen 14 PDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELN 48 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444 443333
No 323
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=46.25 E-value=3.7e+02 Score=29.10 Aligned_cols=98 Identities=20% Similarity=0.367 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy15551 59 TRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLA 138 (640)
Q Consensus 59 ~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e~~~d~~~~lem~tldkemaee~~e~l~~el~~~ 138 (640)
+.||+.+++.++. .+.++.+.. +.....+.-+|+...|+...-+.+....|++.+
T Consensus 158 l~DLesa~vkV~W---LR~~L~Ei~----------------------Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~ 212 (269)
T PF05278_consen 158 LKDLESAKVKVDW---LRSKLEEIL----------------------EAKEIYDQHETREEEKEEKDRKLELKKEELEEL 212 (269)
T ss_pred HHHHHHcCcchHH---HHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhh
Q psy15551 139 KEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLR 192 (640)
Q Consensus 139 k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvrlR 192 (640)
.+++.+.+.++.-++..+.+ ....+-+|+..-.||..++.-++
T Consensus 213 ~EeL~~~Eke~~e~~~~i~e-----------~~~rl~~l~~~~~~l~k~~~~~~ 255 (269)
T PF05278_consen 213 EEELKQKEKEVKEIKERITE-----------MKGRLGELEMESTRLSKTIKSIK 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
No 324
>PRK11519 tyrosine kinase; Provisional
Probab=46.02 E-value=5.9e+02 Score=30.38 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 345 NAELIKSQEKLKQRVTELEADCADLHEQ 372 (640)
Q Consensus 345 ~~~l~~~~~~l~~kL~~~e~~~~~l~~q 372 (640)
..=|......++++|..+|..+.+.+.+
T Consensus 269 ~~fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 269 LAFLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667777888888888888888875
No 325
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=45.85 E-value=2.2e+02 Score=28.57 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 366 CADLHEQVDAALGA-EEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVI 443 (640)
Q Consensus 366 ~~~l~~q~d~a~gA-EEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~ 443 (640)
+.++-.-++.-+|. ..++.-.+......-++|+.|+.+|.++. -+..++..++-..-++...++-+++....+++++.
T Consensus 49 imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~ 128 (157)
T COG3352 49 IMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELK 128 (157)
T ss_pred HHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 33444455666663 35777788888899999999999999999 78888888888887776666555555555555444
Q ss_pred H
Q psy15551 444 R 444 (640)
Q Consensus 444 r 444 (640)
.
T Consensus 129 ~ 129 (157)
T COG3352 129 M 129 (157)
T ss_pred H
Confidence 3
No 326
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=45.85 E-value=5.8e+02 Score=30.25 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhhch
Q psy15551 130 TLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLS 195 (640)
Q Consensus 130 ~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvrlRd~s 195 (640)
.+..++..++.+..+...+++.|+-.+++..... ..+.+|.+|+.+-.||-.+ .+|++..
T Consensus 168 ~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~-----l~~gE~e~L~~e~~rLsn~-ekl~~~~ 227 (557)
T COG0497 168 QARRELEDLQEKERERAQRADLLQFQLEELEELN-----LQPGEDEELEEERKRLSNS-EKLAEAI 227 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCchHHHHHHHHHHHhhH-HHHHHHH
Confidence 3445555566666666666666666555543331 2333678888887777543 4455544
No 327
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=45.63 E-value=2.1e+02 Score=24.99 Aligned_cols=28 Identities=14% Similarity=-0.008 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 448 AALESLADRELTIVKFRELVIREKEAAL 475 (640)
Q Consensus 448 q~eEqLEDlE~TIsKFRELV~~LQedLe 475 (640)
.+...+..++.++.+.+..+...+..+.
T Consensus 76 ~l~~q~~~l~~~l~~l~~~~~~~e~~l~ 103 (127)
T smart00502 76 VLEQQLESLTQKQEKLSHAINFTEEALN 103 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444454444444444443
No 328
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=45.56 E-value=48 Score=36.39 Aligned_cols=111 Identities=15% Similarity=0.208 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy15551 345 NAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKE 423 (640)
Q Consensus 345 ~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE 423 (640)
+..|....+.|..-+..+...|.+|.-.+++..++ |.+++...-.+.-.|..++..|.+++ .+..++.-+. .|..
T Consensus 37 LsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~s---l~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls-~h~s 112 (326)
T PF04582_consen 37 LSALESSVASLSDSVSSLSSTISDLSSDLQDLASS---LADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLS-DHSS 112 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhh-hhhh
Confidence 33333333344444444444444444444433332 33333333334444444444444444 3333333332 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 424 IEIELKEEVEMARSATREVIREKEAALESLADRELT 459 (640)
Q Consensus 424 ~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~T 459 (640)
....|+..+......|.+++.-+..+.-.|.+++..
T Consensus 113 sIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~R 148 (326)
T PF04582_consen 113 SISDLQSSVSALSTDVSNLKSDVSTQALNITDLESR 148 (326)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHH
Confidence 223444444444444444444444444444433333
No 329
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=45.51 E-value=1.4e+02 Score=26.59 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15551 386 LSVQKLELEDLVSKQAEE 403 (640)
Q Consensus 386 LTEKNleLEEKIeELEet 403 (640)
+.++...++.++.++++.
T Consensus 79 lk~~i~~le~~~~~~e~~ 96 (108)
T PF02403_consen 79 LKEEIKELEEQLKELEEE 96 (108)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 330
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=45.25 E-value=1.8e+02 Score=25.88 Aligned_cols=26 Identities=23% Similarity=0.435 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 383 VQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 383 VEELTEKNleLEEKIeELEetIeDLE 408 (640)
.+.|..+-..+.+++..++..+..++
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e 94 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELE 94 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555444444
No 331
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=45.14 E-value=49 Score=29.63 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 426 IELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKE 472 (640)
Q Consensus 426 KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQe 472 (640)
..+.+-+++.+..+..+...+......+.....+|..+...+..+..
T Consensus 73 ~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 119 (120)
T PF02996_consen 73 MSLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQ 119 (120)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77888888888888888888888888888888888888888777653
No 332
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=44.98 E-value=1.5e+02 Score=29.12 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=5.9
Q ss_pred HHHHHHHhhhch
Q psy15551 184 LRETLVRLRDLS 195 (640)
Q Consensus 184 LreaLvrlRd~s 195 (640)
+|..+++.++.+
T Consensus 30 ~R~~i~~~~~~~ 41 (192)
T PF05529_consen 30 IRRKIFKFLDKS 41 (192)
T ss_pred HHHHHHHHHHHH
Confidence 444555555544
No 333
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=44.48 E-value=2.6e+02 Score=32.74 Aligned_cols=58 Identities=22% Similarity=0.289 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhh
Q psy15551 60 RDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE-DTADLVETLEMMTLD 120 (640)
Q Consensus 60 ~~l~~~~~~~~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e-~~~d~~~~lem~tld 120 (640)
.++++++.+..+ -+.+|......++.....+++.++++..+.. +++.+.+...+-..|
T Consensus 219 ~e~d~lk~e~~~---~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~~~~~~ 277 (555)
T TIGR03545 219 EEFDKLKKEGKA---DKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKYAIKSGD 277 (555)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHHHhCCCccc
Confidence 344444444433 4555666666677777777777777666554 666666655544333
No 334
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=44.38 E-value=3.3e+02 Score=27.01 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 337 DIEEKKQENAELIKSQEKLKQRVTELEADCA 367 (640)
Q Consensus 337 ~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~ 367 (640)
+++.++..+..|...++.-++.-..++..+.
T Consensus 51 e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~ 81 (158)
T PF09744_consen 51 ELELLREDNEQLETQYEREKELRKQAEEELL 81 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544444444444333
No 335
>PF15456 Uds1: Up-regulated During Septation
Probab=44.32 E-value=2.9e+02 Score=26.35 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15551 336 KDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAA 376 (640)
Q Consensus 336 ~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a 376 (640)
.++++++.|..-|....+-++.++. ++..+-|...-+-..
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l 61 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRL 61 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 5667777777777777777877777 788877776665443
No 336
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=44.24 E-value=8e+02 Score=31.43 Aligned_cols=51 Identities=14% Similarity=0.059 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 358 RVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 358 kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
++.++|..++....--+.+-+.-+.+.+..+.|..|.+.+......++.+.
T Consensus 235 R~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~ 285 (1109)
T PRK10929 235 RQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIA 285 (1109)
T ss_pred HHHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555443233334444477777778888888777777766665
No 337
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=44.20 E-value=5e+02 Score=29.05 Aligned_cols=57 Identities=32% Similarity=0.365 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15551 88 RELEKLKQEKQEAVEAKEDTADLVETLEMM--TLDKEMAEERAETLQVELDLAKEKIEELTLD 148 (640)
Q Consensus 88 ~el~~~k~~~~e~~~~~e~~~d~~~~lem~--tldkemaee~~e~l~~el~~~k~k~eel~le 148 (640)
+++..++..............++.+..||+ .-|.||. +.+..|+..+...++++++.
T Consensus 56 ke~~~l~~~v~~~~~~~~~~~d~~~l~el~~~e~D~e~~----~~a~~e~~~l~~~l~~le~~ 114 (364)
T TIGR00020 56 KERSSLEAVLDTLEELKNSLEDLSELLELAVEEDDEETF----NELDAELKALEKKLAELELR 114 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444445555554 2355554 34556667777777777644
No 338
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=44.13 E-value=82 Score=36.24 Aligned_cols=27 Identities=15% Similarity=0.152 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 382 MVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 382 MVEELTEKNleLEEKIeELEetIeDLE 408 (640)
.++.++.++.+++.+|++|+.++..|.
T Consensus 91 Elq~~saq~~dle~KIkeLEaE~~~Lk 117 (475)
T PRK13729 91 ELDVLNKQRGDDQRRIEKLGQDNAALA 117 (475)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 344455666666666666666665554
No 339
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=43.58 E-value=2.1e+02 Score=24.46 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 380 EEMVQQLSVQKLELEDLVSKQAEEIVD 406 (640)
Q Consensus 380 EEMVEELTEKNleLEEKIeELEetIeD 406 (640)
+..+.+-..+|.+|+.+|..|+..+++
T Consensus 31 e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 31 ESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555544444
No 340
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=43.48 E-value=1.1e+02 Score=32.25 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=6.5
Q ss_pred hhchhhhhhhccc
Q psy15551 245 LYDLSAHEIFNNK 257 (640)
Q Consensus 245 ~~~~~~~~~~~~~ 257 (640)
|-++.+|++|.|.
T Consensus 37 L~g~CPhdLF~nT 49 (254)
T PF03194_consen 37 LVGFCPHDLFVNT 49 (254)
T ss_pred HhCCCcHHHHhhc
Confidence 3444555555543
No 341
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=43.20 E-value=1.1e+02 Score=27.20 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 358 RVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 358 kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
.+......|..|+.+||..-..-+-|.+|+++...+...+..++.++....
T Consensus 12 dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~ 62 (75)
T PF05531_consen 12 DIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQ 62 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555554444445566677777777777666666666554
No 342
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.17 E-value=78 Score=28.07 Aligned_cols=31 Identities=26% Similarity=0.331 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhhh
Q psy15551 127 RAETLQVELDLAKEKIEELTLDIELMKADIE 157 (640)
Q Consensus 127 ~~e~l~~el~~~k~k~eel~le~e~lk~e~e 157 (640)
-.+.|++.+..+-+-|.-|.++|+-||+.+.
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEieELKEknn 35 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555555555556666666655443
No 343
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=43.13 E-value=4.6 Score=36.65 Aligned_cols=43 Identities=28% Similarity=0.441 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 332 SKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVD 374 (640)
Q Consensus 332 ~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d 374 (640)
..+..+++.+..++++|....+.|..++..+......|+..|.
T Consensus 28 ~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~ 70 (131)
T PF05103_consen 28 DELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALI 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhh
Confidence 4444555555566666666666666666666666666665553
No 344
>PRK04406 hypothetical protein; Provisional
Probab=41.96 E-value=1.3e+02 Score=26.31 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy15551 388 VQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 388 EKNleLEEKIeELEetIeDLE 408 (640)
++..+|+.++.-++.+|++|.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN 31 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELN 31 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 345
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=40.94 E-value=6.4e+02 Score=29.71 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15551 342 KQENAELIKSQEKLKQRVTELEADCADLHEQVDAALG 378 (640)
Q Consensus 342 ~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~g 378 (640)
.....-+...++.|..+|..+|..-..+.+++-.+.|
T Consensus 433 dSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~ 469 (518)
T PF10212_consen 433 DSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQ 469 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555544444444443333
No 346
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=40.74 E-value=2.9e+02 Score=25.32 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy15551 386 LSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAK 422 (640)
Q Consensus 386 LTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhv 422 (640)
+.+-..-+..++..|+..++.++ .+..+.++++....
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~ 122 (129)
T cd00584 85 LEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEA 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777777777766 66666666655444
No 347
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=40.54 E-value=1.3e+02 Score=25.27 Aligned_cols=39 Identities=26% Similarity=0.287 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 427 ELKEEVEMARSATREVIREKEAALESLADRELTIVKFRE 465 (640)
Q Consensus 427 eLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRE 465 (640)
++..++...++.+.+++.++.+..+.+++++.+|.+.-.
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777778888888888888888888888888755443
No 348
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=40.42 E-value=1.7e+02 Score=34.17 Aligned_cols=56 Identities=11% Similarity=0.104 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 353 EKLKQRVTELEADCADLHEQVDAALGA----EEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 353 ~~l~~kL~~~e~~~~~l~~q~d~a~gA----EEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
+++..++..+|..++.|.+++-+.-.. ...+.++..+...++.+++++.+.-.+|+
T Consensus 566 ~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~ 625 (638)
T PRK10636 566 ARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQ 625 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544211000 11344444444444444444444444444
No 349
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=40.09 E-value=17 Score=33.04 Aligned_cols=14 Identities=14% Similarity=0.257 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q psy15551 388 VQKLELEDLVSKQA 401 (640)
Q Consensus 388 EKNleLEEKIeELE 401 (640)
.+|..|..++.+|+
T Consensus 39 ~e~~~L~~~~~~l~ 52 (131)
T PF05103_consen 39 RENAELKEEIEELQ 52 (131)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 350
>PRK04325 hypothetical protein; Provisional
Probab=40.03 E-value=1.2e+02 Score=26.30 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy15551 392 ELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAK 422 (640)
Q Consensus 392 eLEEKIeELEetIeDLE-aLkELnDELEEnhv 422 (640)
.++++|.+|+..+...| .+.++|+.+-+.+.
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~ 37 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQ 37 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777776666 66666666555443
No 351
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=39.95 E-value=66 Score=30.21 Aligned_cols=51 Identities=31% Similarity=0.505 Sum_probs=27.4
Q ss_pred hhhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 308 EIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTEL 362 (640)
Q Consensus 308 ~~~~~~~~~~~~l~d~~~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~ 362 (640)
+||+.=+.+.++| ...-.++..|...+.++-.||+.|.-..+.|+.++.+.
T Consensus 5 elfd~l~~le~~l----~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 5 EIFDALDDLEQNL----GVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555 22333455555555555556666665555555555544
No 352
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=39.47 E-value=3.1e+02 Score=25.36 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 410 LQVVSDQLQEDAKEIEIELKEEVEMAR 436 (640)
Q Consensus 410 LkELnDELEEnhvE~EKeLREELD~kd 436 (640)
..++.+.|.....++...+...++...
T Consensus 91 ~~~~~~~l~~~~~~~~~~~~~~~~~~~ 117 (202)
T PF01442_consen 91 AEELKERLEARAEELESRLEEEVDELE 117 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444433344444444443333
No 353
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=39.33 E-value=5.5e+02 Score=28.11 Aligned_cols=20 Identities=10% Similarity=0.091 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15551 453 LADRELTIVKFRELVIREKE 472 (640)
Q Consensus 453 LEDlE~TIsKFRELV~~LQe 472 (640)
+...+..+.+....+...+.
T Consensus 143 L~~~~~~l~q~~~k~~~~q~ 162 (301)
T PF06120_consen 143 LAVAQERLEQMQSKASETQA 162 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 354
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=39.03 E-value=5.2e+02 Score=27.75 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHhhhhhhhhHHHHhhHHH
Q psy15551 35 QSAEFKAKIMESQAASSLFRYREKTRDLDE 64 (640)
Q Consensus 35 q~~~~k~k~~e~~~~~~~~~d~~k~~~l~~ 64 (640)
|+.+.+.++.+.+.+-.-|+.+..+-+.+.
T Consensus 178 ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~ 207 (362)
T TIGR01010 178 EVKEAEQRLNATKAELLKYQIKNKVFDPKA 207 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcChHH
Confidence 445555566666655555555555555443
No 355
>KOG3809|consensus
Probab=38.88 E-value=5e+02 Score=30.24 Aligned_cols=123 Identities=19% Similarity=0.172 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHhhcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy15551 353 EKLKQRVTELEADCADLHEQV-------DAALGAE-EMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKE 423 (640)
Q Consensus 353 ~~l~~kL~~~e~~~~~l~~q~-------d~a~gAE-EMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE 423 (640)
-.|-+++-+...++.++..|+ |-.+.++ +.|++|-+..+.|-..+-=|=.-+.-.. .+..|..||+--|.+
T Consensus 443 G~LVqkIlETkke~e~~g~~~~p~e~~a~~~~sa~~~~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrse 522 (583)
T KOG3809|consen 443 GALVQKILETKKEIEDGGGQDQPEESDADKIMSAEREKMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELEMWRSE 522 (583)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 446666677777777776655 2233333 3444444444444433333222222222 344455555544333
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 424 I---EIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAAL 475 (640)
Q Consensus 424 ~---EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLe 475 (640)
. +.+|+.|.-.......-|...++.++..|.|+...|.+.|-.|-.....|+
T Consensus 523 ~rq~~~elq~eq~~t~~a~epL~~~la~lq~~I~d~~e~i~~~r~~IL~Ne~rIq 577 (583)
T KOG3809|consen 523 QRQNEQELQNEQAATFGASEPLYNILANLQKEINDTKEEISKARGRILNNEKRIQ 577 (583)
T ss_pred HHHhHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 2 255666655555555555566666666666666666666655555554444
No 356
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=38.84 E-value=5.7e+02 Score=28.14 Aligned_cols=56 Identities=30% Similarity=0.363 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHh
Q psy15551 128 AETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRL 191 (640)
Q Consensus 128 ~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvrl 191 (640)
-|++...+..++-.++||.-|++-.++.... .+.+..++.. +.++-..|++.|..|
T Consensus 89 ~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~-----~~~e~~~~~~---l~~~~~~L~~~L~~l 144 (388)
T PF04912_consen 89 KESPEQKLQRLRREVEELKEELEKRKADSKE-----SDEEKISPEE---LAQQLEELSKQLDSL 144 (388)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhcccc-----cccccCChhh---HHHHHHHHHHHHHHh
Confidence 3556666666666666666666666644222 1122223322 355556666666666
No 357
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=38.83 E-value=3.1e+02 Score=25.06 Aligned_cols=38 Identities=16% Similarity=0.132 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy15551 384 QQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDA 421 (640)
Q Consensus 384 EELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnh 421 (640)
..+.+-..-++.++..++..++.++ .+..+.++++...
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~ 120 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLE 120 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667777777777777766 6666666665543
No 358
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=38.77 E-value=4.3e+02 Score=26.74 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=28.5
Q ss_pred HHHHHHHH--hhcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q psy15551 368 DLHEQVDA--ALGAEEMVQQLSVQKLELEDLVSKQAEEI--VDLEALQVVSDQLQEDAK 422 (640)
Q Consensus 368 ~l~~q~d~--a~gAEEMVEELTEKNleLEEKIeELEetI--eDLEaLkELnDELEEnhv 422 (640)
++.++|-. +-+..+++.+++++.-++.-++.++--.. .-+..+...+.+++++-.
T Consensus 70 ~~vk~L~k~~~~~l~d~inE~t~k~~El~~~i~el~~~~~Ks~~~~l~q~~~~~eEtv~ 128 (165)
T PF09602_consen 70 EYVKQLRKATGNSLNDSINEWTDKLNELSAKIQELLLSPSKSSFSLLSQISKQYEETVK 128 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhhHHHHHH
Confidence 33444522 33444667777777766666666555444 223344444555554433
No 359
>KOG4593|consensus
Probab=37.92 E-value=8.4e+02 Score=29.82 Aligned_cols=74 Identities=23% Similarity=0.342 Sum_probs=55.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q psy15551 111 VETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVR 190 (640)
Q Consensus 111 ~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvr 190 (640)
....||+|| +.-+..++-.++-++...+.++.-+...+.-...++.. +.+|+...+..+++..-+
T Consensus 151 ~k~ae~~~l-r~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~--------------~~~ql~~~~q~~~~~~~~ 215 (716)
T KOG4593|consen 151 DKLAELGTL-RNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDR--------------QHKQLQEENQKIQELQAS 215 (716)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 355667776 34567888888899999888888888777766655543 457888888888888888
Q ss_pred hhhchhhhh
Q psy15551 191 LRDLSAHEI 199 (640)
Q Consensus 191 lRd~s~~~~ 199 (640)
|+.+++|..
T Consensus 216 l~e~~~~~q 224 (716)
T KOG4593|consen 216 LEERADHEQ 224 (716)
T ss_pred HHHHHHHHH
Confidence 888887653
No 360
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=37.54 E-value=1.7e+02 Score=24.65 Aligned_cols=14 Identities=36% Similarity=0.387 Sum_probs=5.5
Q ss_pred HHHHHHhhcHHHHH
Q psy15551 370 HEQVDAALGAEEMV 383 (640)
Q Consensus 370 ~~q~d~a~gAEEMV 383 (640)
.+-|..-+++.+||
T Consensus 34 ~envk~ll~lYE~V 47 (55)
T PF05377_consen 34 EENVKDLLSLYEVV 47 (55)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344444443
No 361
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=36.77 E-value=3.2e+02 Score=24.59 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 351 SQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 351 ~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
....|...+..+|..+..--+..+..-+++..|..|....-.|.+++.........|+
T Consensus 9 al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le 66 (89)
T PF13747_consen 9 ALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLE 66 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Confidence 3344555555566666555555555555555555555555555555555555444444
No 362
>KOG0962|consensus
Probab=36.69 E-value=1.1e+03 Score=30.84 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=25.2
Q ss_pred HhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 59 TRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAK 104 (640)
Q Consensus 59 ~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~~~~ 104 (640)
..++...+.......++...+.+...+++.++......++++.+..
T Consensus 863 ~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~ 908 (1294)
T KOG0962|consen 863 RNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERI 908 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 3344444444555555555555666666666666666666555433
No 363
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=36.43 E-value=7.1e+02 Score=28.58 Aligned_cols=30 Identities=33% Similarity=0.576 Sum_probs=19.6
Q ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy15551 312 NKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQEN 345 (640)
Q Consensus 312 ~~~~~~~~l~d~~~~~k~~~~~~~~~~e~~~~~~ 345 (640)
+.+.+.+.+ .+.++.+..|.+.+.+++...
T Consensus 245 ~~~~~~~~i----~~a~~~i~~L~~~l~~l~~~~ 274 (582)
T PF09731_consen 245 SESDLNSLI----AHAKERIDALQKELAELKEEE 274 (582)
T ss_pred cccccHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 344555545 777788888888777665544
No 364
>KOG1003|consensus
Probab=36.40 E-value=5.2e+02 Score=27.00 Aligned_cols=103 Identities=22% Similarity=0.250 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 350 KSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELK 429 (640)
Q Consensus 350 ~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLEaLkELnDELEEnhvE~EKeLR 429 (640)
...+....+....++.|..|-+++-.- -..+..|+..+..+..+...++..|..+. +.|-+
T Consensus 95 ~dLE~~eeraE~~Es~~~eLeEe~~~~---~~nlk~l~~~ee~~~q~~d~~e~~ik~lt------dKLkE---------- 155 (205)
T KOG1003|consen 95 GELERAEERAEAAESQSEELEEDLRIL---DSNLKSLSAKEEKLEQKEEKYEEELKELT------DKLKE---------- 155 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh---HhHHHHHHHHHHHHhhhHHHHHHHHHHHH------HHHhh----------
Confidence 334444555566666666666654321 22344455555555555555444444443 22211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15551 430 EEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALE 476 (640)
Q Consensus 430 EELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeE 476 (640)
.+..-.-..|+++.+...+.|++.....++.....++..|.+
T Consensus 156 -----aE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~ 197 (205)
T KOG1003|consen 156 -----AETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDE 197 (205)
T ss_pred -----hhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 112222334666666666666666666666665555555543
No 365
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=36.10 E-value=2.6e+02 Score=31.81 Aligned_cols=119 Identities=21% Similarity=0.345 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHHHHHHHHHHHhhhhhhhhHHHHhhHHHHHHHHHhHHHHHHHHHHH
Q psy15551 3 AEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMES 82 (640)
Q Consensus 3 ~e~~~l~~kl~~~~~k~~ek~~~~~~~~~ql~q~~~~k~k~~e~~~~~~~~~d~~k~~~l~~~~~~~~~~~~~k~~~~~~ 82 (640)
.||++|+..|.+|++=|.. |+..|.+.... -++|++.+-.+..... ...-++.|...
T Consensus 151 ~Ev~~LRreLavLRQl~~~-----------------~~~~~~~~i~~-----i~~ki~~~k~~s~~~~-~~~~R~~~~~~ 207 (424)
T PF03915_consen 151 KEVQSLRRELAVLRQLYSE-----------------FQSEVKESISS-----IREKIKKVKSASTNAS-GDSNRAYMESG 207 (424)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHH-----HHHHHHHHHHhhcccc-ccchhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q psy15551 83 QAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADI 156 (640)
Q Consensus 83 ~~~~~~el~~~k~~~~e~~~~~e~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~ 156 (640)
...|..+-..+=. .+.||++++|-+.-| ++.-++-.....++.+...+..++.+|.-|+.-+
T Consensus 208 k~~L~~~sd~Ll~----------kVdDLQD~VE~LRkD--V~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i 269 (424)
T PF03915_consen 208 KKKLSEESDRLLT----------KVDDLQDLVEDLRKD--VVQRGVRPSPKQLETVAKDISRASKELKKMKEYI 269 (424)
T ss_dssp HHHHHHHHHHHHH----------HHHHHHHHHHHHHHH--HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHH--HHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
No 366
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=35.69 E-value=5.2e+02 Score=26.77 Aligned_cols=80 Identities=20% Similarity=0.303 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------HHHHHHHHHHHHHHHHHHHHHH
Q psy15551 329 HEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALG--------AEEMVQQLSVQKLELEDLVSKQ 400 (640)
Q Consensus 329 ~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~g--------AEEMVEELTEKNleLEEKIeEL 400 (640)
+.+..++.++.....++.++.+.++.+.....+....|+.+..-|...++ +...+..+...+..+...+..+
T Consensus 9 ~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~ 88 (207)
T PF05010_consen 9 AAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSL 88 (207)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHH
Confidence 33455555555555556666666666655555555555555554443332 2233444444444444444444
Q ss_pred HHHHHHHH
Q psy15551 401 AEEIVDLE 408 (640)
Q Consensus 401 EetIeDLE 408 (640)
+..+.||=
T Consensus 89 E~sfsdl~ 96 (207)
T PF05010_consen 89 EKSFSDLH 96 (207)
T ss_pred HhhHHHHH
Confidence 44444444
No 367
>KOG1510|consensus
Probab=35.48 E-value=1.6e+02 Score=29.02 Aligned_cols=42 Identities=40% Similarity=0.491 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 329 HEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLH 370 (640)
Q Consensus 329 ~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~ 370 (640)
..|.+|+.++++...++.++....|+|..++..+=++++++.
T Consensus 91 ~~i~kLq~en~e~~~el~~~v~~~e~Ll~~vq~~le~~a~~~ 132 (139)
T KOG1510|consen 91 EKIKKLQEENEEVALELEELVSKGEKLLEQVQSLLEDIADLQ 132 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999999999999999888888877777653
No 368
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=35.29 E-value=4.8e+02 Score=26.25 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=35.1
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 377 LGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKE 447 (640)
Q Consensus 377 ~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIe 447 (640)
.|....++.-. ...++..+|..|+..+.+|+ .+.++....+......+.....+.......+.-+.+...
T Consensus 110 f~~rk~l~~e~-~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ 180 (189)
T PF10211_consen 110 FGMRKALQAEQ-GKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQ 180 (189)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555444322 24566666677666666666 565555555555444444333333333333333333333
No 369
>KOG0992|consensus
Probab=35.26 E-value=8.3e+02 Score=29.00 Aligned_cols=43 Identities=9% Similarity=0.145 Sum_probs=22.3
Q ss_pred HHHHHHHhhhhhhhhhchHHHHHHHHHhhcCCCccchhhhhhh
Q psy15551 530 LMDYVKILSTASDCLQTDSKIIQALIQETMMPCECYSLFLHSY 572 (640)
Q Consensus 530 ~lLlf~RLa~Acd~~~~Ka~Ll~~~I~e~~~~~~~~~l~~~~~ 572 (640)
++-.|-||-.|..-=.-|++.+..++.+....+-.-.=++.+|
T Consensus 479 lierivrLQ~a~arknekiefLe~h~~qlveevQKktKiiQhy 521 (613)
T KOG0992|consen 479 LIERIVRLQLAIARKNEKIEFLEQHLIQLVEEVQKKTKIIQHY 521 (613)
T ss_pred HHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666654444444566666666665544333223355555
No 370
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=35.13 E-value=5e+02 Score=26.39 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15551 436 RSATREVIREKEAALESLADRE 457 (640)
Q Consensus 436 dsqIrEL~rRIeq~eEqLEDlE 457 (640)
++.|..+...+....+.+.+++
T Consensus 158 ~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 158 DKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 371
>KOG2264|consensus
Probab=35.05 E-value=2.9e+02 Score=33.05 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15551 386 LSVQKLELEDLVSKQAEEIV 405 (640)
Q Consensus 386 LTEKNleLEEKIeELEetIe 405 (640)
|..+.++|..+|++++..|+
T Consensus 98 le~krqel~seI~~~n~kiE 117 (907)
T KOG2264|consen 98 LEVKRQELNSEIEEINTKIE 117 (907)
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 33334444444444333333
No 372
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=35.00 E-value=7.5e+02 Score=28.42 Aligned_cols=103 Identities=10% Similarity=0.023 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHH--HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 360 TELEADCADLHEQV--DAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARS 437 (640)
Q Consensus 360 ~~~e~~~~~l~~q~--d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLEaLkELnDELEEnhvE~EKeLREELD~kds 437 (640)
...|..|..|-++. |+--.++..|+...++...-...+..++..-.-+.--.+. +........|+.++-....
T Consensus 226 ~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a-----~~~~~lI~~Le~qLa~~~a 300 (434)
T PRK15178 226 SFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETI-----TAIYQLIAGFETQLAEAKA 300 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 34555555554443 5555555666655555555555555555443322211111 1112222444444444444
Q ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 438 ATREVIR-------EKEAALESLADRELTIVKFRELV 467 (640)
Q Consensus 438 qIrEL~r-------RIeq~eEqLEDlE~TIsKFRELV 467 (640)
++..+.. +|..+..+|.-++..|..-|..+
T Consensus 301 eL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 301 EYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred HHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 4444432 44455555555555555555444
No 373
>KOG0796|consensus
Probab=34.99 E-value=3.6e+02 Score=29.80 Aligned_cols=28 Identities=29% Similarity=0.274 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 75 FKAKIMESQAGLKRELEKLKQEKQEAVE 102 (640)
Q Consensus 75 ~k~~~~~~~~~~~~el~~~k~~~~e~~~ 102 (640)
|...|....+.+++.+...+..+++.++
T Consensus 84 ~~~~l~~~v~d~~rri~~~kerL~e~~e 111 (319)
T KOG0796|consen 84 ALEILERFVADVDRRIEKAKERLAETVE 111 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6677778888888888888877777744
No 374
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=34.82 E-value=7.2e+02 Score=28.17 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=20.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 66 KIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVE 102 (640)
Q Consensus 66 ~~~~~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~~ 102 (640)
..+++.....+.+..+.++..+..|.+++.+.++..+
T Consensus 38 ~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~ 74 (445)
T PRK13428 38 RQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVE 74 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445556666666666666666666555443
No 375
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=34.58 E-value=4.9e+02 Score=26.15 Aligned_cols=58 Identities=17% Similarity=0.131 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 388 VQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEA 448 (640)
Q Consensus 388 EKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq 448 (640)
++..-|++....+...|.+|+ .+..+.+...-.+.=. =|.||+..-..|..+..+|..
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~---hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQ---HRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH---hHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555 5555555544433322 255555555555555555544
No 376
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=34.54 E-value=4.8e+02 Score=26.01 Aligned_cols=90 Identities=26% Similarity=0.351 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhcHHHHHHHHHHHHHHHHHHHHH
Q psy15551 325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDA-----ALGAEEMVQQLSVQKLELEDLVSK 399 (640)
Q Consensus 325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~-----a~gAEEMVEELTEKNleLEEKIeE 399 (640)
...+.+...+.++|++.+.+.++.+...++|..+-..+-....+.-...+. .-.|.+...++--+..-+.++-..
T Consensus 23 E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~q 102 (159)
T PF05384_consen 23 EQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQ 102 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777777777776666666655555555555444333321 112233344444445555555555
Q ss_pred HHHHHHHHH-HHHHHH
Q psy15551 400 QAEEIVDLE-ALQVVS 414 (640)
Q Consensus 400 LEetIeDLE-aLkELn 414 (640)
|...-++|| .|+.+.
T Consensus 103 Lr~rRD~LErrl~~l~ 118 (159)
T PF05384_consen 103 LRERRDELERRLRNLE 118 (159)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 555555555 444433
No 377
>PRK12704 phosphodiesterase; Provisional
Probab=34.31 E-value=8e+02 Score=28.54 Aligned_cols=12 Identities=0% Similarity=0.075 Sum_probs=4.4
Q ss_pred HHHHHHHHHHhh
Q psy15551 527 GHLLMDYVKILS 538 (640)
Q Consensus 527 sVl~lLlf~RLa 538 (640)
|+-+-.+...|+
T Consensus 340 s~~Va~lA~~lA 351 (520)
T PRK12704 340 SIEVAHLAGLMA 351 (520)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 378
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=33.92 E-value=3.4e+02 Score=24.12 Aligned_cols=61 Identities=11% Similarity=0.208 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 381 EMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEA 448 (640)
Q Consensus 381 EMVEELTEKNleLEEKIeELEetIeDLEaLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq 448 (640)
.++..|...|..|.+-.......+..+ ...+ ..|.++-++++.+|++.-..|+.+..++..
T Consensus 22 ~~l~~ln~tn~~L~~~n~~s~~rl~~~------~~~f-~~~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 22 QTLGRLNKTNEELLNLNDLSQQRLAEA------RERF-ARHTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555444444444433 3333 367788899999999999999988887754
No 379
>PRK02119 hypothetical protein; Provisional
Probab=33.39 E-value=2.2e+02 Score=24.66 Aligned_cols=14 Identities=14% Similarity=-0.069 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q psy15551 440 REVIREKEAALESL 453 (640)
Q Consensus 440 rEL~rRIeq~eEqL 453 (640)
.++..++.-++..|
T Consensus 12 ~~LE~rla~QE~ti 25 (73)
T PRK02119 12 AELEMKIAFQENLL 25 (73)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 380
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=33.25 E-value=3.8e+02 Score=27.37 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhh---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy15551 345 NAELIKSQEKLKQRVTELEADCADLHE-----QVDAAL---GAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSD 415 (640)
Q Consensus 345 ~~~l~~~~~~l~~kL~~~e~~~~~l~~-----q~d~a~---gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnD 415 (640)
|..|......+...+..+...|+++.- |++++- +++.-...+-.+|.+++-.+..|+..|.++. ...+..+
T Consensus 138 n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 138 NEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred HHH
Q psy15551 416 QLQ 418 (640)
Q Consensus 416 ELE 418 (640)
..+
T Consensus 218 ~~~ 220 (221)
T PF05700_consen 218 NQQ 220 (221)
T ss_pred ccc
No 381
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=33.01 E-value=3.3e+02 Score=23.63 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cHHHHHHHH
Q psy15551 333 KLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAAL-GAEEMVQQL 386 (640)
Q Consensus 333 ~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~-gAEEMVEEL 386 (640)
.|...++.+-.-..+|......|.+++..+.+.-+.|.+..+.|- -.|.||..|
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RL 58 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRL 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444555555555555555566666666677777777766543 244444443
No 382
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=32.80 E-value=1.1e+03 Score=29.73 Aligned_cols=117 Identities=25% Similarity=0.360 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH--HHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q psy15551 78 KIMESQAGLKRELEKLKQEKQEAVEAKEDT--------ADLV--ETLEMMTLDKEMAEERAET-LQVELDLAKEKIEELT 146 (640)
Q Consensus 78 ~~~~~~~~~~~el~~~k~~~~e~~~~~e~~--------~d~~--~~lem~tldkemaee~~e~-l~~el~~~k~k~eel~ 146 (640)
+.|...++|-.+.+.++++..-..+..+-+ .++. -..+-...+.|-+-|.+-. ++.-....++-.-+|.
T Consensus 624 ~~~q~~~EL~~q~~~L~ee~~af~~~v~~l~~~~e~~~~~ls~~~~~~r~~~~~e~~~Ee~r~~le~~~~~t~El~~~L~ 703 (984)
T COG4717 624 KLMQKKAELTHQVARLREEQAAFEERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKELNDELR 703 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHH
Confidence 344555666666666666554333333311 0010 1122334455555555554 5555555555555667
Q ss_pred hhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy15551 147 LDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSAH 197 (640)
Q Consensus 147 le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvrlRd~s~~ 197 (640)
-+++.-+.++...-+.+..+++. .+.+--..-.++++..-||+++.++
T Consensus 704 ae~~~~~kei~dLfd~~~~~~ed---~F~e~A~~~qq~~q~~srl~~~~aq 751 (984)
T COG4717 704 AELELHRKEILDLFDCGTADTED---AFREAAREEQQLTQRESRLESLEAQ 751 (984)
T ss_pred HHHHHHHHHHHHHHhhcccCcHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888887765443333332 2333333333455555566666543
No 383
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=32.67 E-value=5.6e+02 Score=26.22 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 366 CADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 366 ~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
..+++.+++---.+|..--.||.-----+.+|..|+..+.+-+
T Consensus 112 ~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEe 154 (178)
T PF14073_consen 112 QSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEE 154 (178)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555445555555555444444555555555555444
No 384
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=32.66 E-value=3.6e+02 Score=23.96 Aligned_cols=63 Identities=19% Similarity=0.205 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 382 MVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAA 449 (640)
Q Consensus 382 MVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~ 449 (640)
...++..-..+|..-+..++.+++||+ ++.-+...-...+ -=..||..+...+.....+|...
T Consensus 33 ~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~-----l~~~Ei~~Rr~fv~~~~~~i~~~ 96 (97)
T PF09177_consen 33 SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFN-----LSEEEISRRRQFVSAIRNQIKQM 96 (97)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC-----CCHHHHHHHHHHHHHHHHHHHhc
Confidence 455566666677777777777777777 4433222111111 12456666666676666666543
No 385
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=32.50 E-value=4.5e+02 Score=25.07 Aligned_cols=20 Identities=15% Similarity=0.348 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhhhchh
Q psy15551 177 LEQQNMRLRETLVRLRDLSA 196 (640)
Q Consensus 177 le~qN~rLreaLvrlRd~s~ 196 (640)
|...-..+.+.+--+.+++.
T Consensus 35 l~~~~~~i~~~~~~i~~ia~ 54 (213)
T PF00015_consen 35 LSESSEDISEILSLINEIAE 54 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444555553
No 386
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=32.15 E-value=4.7e+02 Score=25.21 Aligned_cols=15 Identities=13% Similarity=0.339 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHh
Q psy15551 362 LEADCADLHEQVDAA 376 (640)
Q Consensus 362 ~e~~~~~l~~q~d~a 376 (640)
+...|+.+-.|||..
T Consensus 41 m~~A~~~v~kql~~v 55 (126)
T PF07889_consen 41 MSDAVASVSKQLEQV 55 (126)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555566666665543
No 387
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=32.09 E-value=1e+03 Score=29.07 Aligned_cols=17 Identities=12% Similarity=0.136 Sum_probs=11.4
Q ss_pred hhhHHHHHhhhhHHHHH
Q psy15551 25 DLDEMKIQLDQSAEFKA 41 (640)
Q Consensus 25 ~~~~~~~ql~q~~~~k~ 41 (640)
+++++...|++..+|..
T Consensus 39 ~~~~i~~~l~~~~e~~~ 55 (771)
T TIGR01069 39 SVEESKEIIIKLTALGS 55 (771)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 55666677777777764
No 388
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=31.79 E-value=6e+02 Score=26.30 Aligned_cols=43 Identities=14% Similarity=0.238 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy15551 351 SQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLEL 393 (640)
Q Consensus 351 ~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleL 393 (640)
-.+.+...|.+..+.+.||++.|+.|.+-....+.|...|...
T Consensus 179 l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~ 221 (264)
T PF06008_consen 179 LAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKN 221 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345777889999999999999999888777766666655544
No 389
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=31.69 E-value=1.8e+02 Score=23.29 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 335 QKDIEEKKQENAELIKSQEKLKQRVTELEADCADLH 370 (640)
Q Consensus 335 ~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~ 370 (640)
++|-+.++..-..|...++.|+.+...+.+.+..|+
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443
No 390
>PHA03332 membrane glycoprotein; Provisional
Probab=31.56 E-value=1.3e+03 Score=29.98 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy15551 175 KQLEQQNMRLRETLV 189 (640)
Q Consensus 175 ~qle~qN~rLreaLv 189 (640)
.+.|--|+|+|.++.
T Consensus 814 ~eFeysneryk~t~s 828 (1328)
T PHA03332 814 LEFEYSNERYKNTLS 828 (1328)
T ss_pred HHHHHHHHHHhhhhh
Confidence 456677888887765
No 391
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=31.38 E-value=3.3e+02 Score=23.22 Aligned_cols=36 Identities=11% Similarity=0.316 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy15551 383 VQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQ 418 (640)
Q Consensus 383 VEELTEKNleLEEKIeELEetIeDLE-aLkELnDELE 418 (640)
+.....-|...+.++.+-+....+|+ .+..+..+++
T Consensus 20 L~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 20 LTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444 3433333333
No 392
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=31.14 E-value=8.3e+02 Score=27.75 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 385 QLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATR-EVIREKEAALESLADRELTIVKF 463 (640)
Q Consensus 385 ELTEKNleLEEKIeELEetIeDLEaLkELnDELEEnhvE~EKeLREELD~kdsqIr-EL~rRIeq~eEqLEDlE~TIsKF 463 (640)
-+++...+-..+.+-|++.++|+-++ |..-...|+++|......+. ....|..+..+.++.++..|.+.
T Consensus 248 ~~~~~LqEEr~R~erLEeqlNd~~el----------Hq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRiskl 317 (395)
T PF10267_consen 248 FILEALQEERYRYERLEEQLNDLTEL----------HQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKL 317 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444445555666666666665533 22222344444444333333 22334445555555555555555
Q ss_pred H
Q psy15551 464 R 464 (640)
Q Consensus 464 R 464 (640)
.
T Consensus 318 E 318 (395)
T PF10267_consen 318 E 318 (395)
T ss_pred H
Confidence 4
No 393
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=30.91 E-value=8e+02 Score=27.50 Aligned_cols=61 Identities=30% Similarity=0.395 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy15551 88 RELEKLKQEKQEAVEAKEDTADLVETLEMMT-LDKEMAEERAETLQVELDLAKEKIEELTLDIELM 152 (640)
Q Consensus 88 ~el~~~k~~~~e~~~~~e~~~d~~~~lem~t-ldkemaee~~e~l~~el~~~k~k~eel~le~e~l 152 (640)
+++..++.-............++.+..||+. -|.|| .+.+..++..+..++++++.++..+
T Consensus 40 k~~~~l~~~v~~~~~~~~~~~~~~~~~el~~~~D~e~----~~~a~~e~~~l~~~~~~~e~~l~~~ 101 (360)
T TIGR00019 40 KEYSQLEEIVDCYREYQQAQEDIKEAKEILEESDPEM----REMAKEELEELEEKIEELEEQLKVL 101 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445444444444445555566666653 35555 3456677788888888888776553
No 394
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=30.87 E-value=4.5e+02 Score=24.59 Aligned_cols=79 Identities=19% Similarity=0.223 Sum_probs=39.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 63 DEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKI 142 (640)
Q Consensus 63 ~~~~~~~~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~ 142 (640)
+++-...........++.+.....+.++....++++......... +.++..+....+...++.....++...
T Consensus 25 ~~v~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~--------~~~ls~~~~~~~~~~l~~~~~~l~~~~ 96 (158)
T PF03938_consen 25 DKVFQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQ--------KATLSEEERQKRQQELQQKEQELQQFQ 96 (158)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------------SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555555556666666666665555444333321 226666666666666655555555444
Q ss_pred HHHhhhH
Q psy15551 143 EELTLDI 149 (640)
Q Consensus 143 eel~le~ 149 (640)
..+.-++
T Consensus 97 ~~~~~~l 103 (158)
T PF03938_consen 97 QQAQQQL 103 (158)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 395
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.76 E-value=3.9e+02 Score=23.86 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=28.7
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 370 HEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 370 ~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
++.||..--+.=.|++|+++|-.|..++..+....+.|+
T Consensus 14 qqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~ 52 (79)
T COG3074 14 QQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALE 52 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 344555555555688999999999998888887776665
No 396
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=30.70 E-value=5.7e+02 Score=25.76 Aligned_cols=99 Identities=31% Similarity=0.322 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhh
Q psy15551 84 AGLKRELEKLKQEKQEAVEAKE----DTADLVETLEMM--TLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIE 157 (640)
Q Consensus 84 ~~~~~el~~~k~~~~e~~~~~e----~~~d~~~~lem~--tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e 157 (640)
..|++|-.+|+.-+.|.+.+.+ ...+....+-+. .-+.+..-...+.+..++....+||.|+. .+|+.=+.
T Consensus 73 ~~Lq~EN~eL~~~leEhq~alelIM~KyReq~~~l~~~~k~~~~~~~~~~~~~~~~~~~~~~~kI~EM~---~vM~~ai~ 149 (181)
T PF05769_consen 73 RQLQQENRELRQSLEEHQSALELIMSKYREQMSQLMMASKFDDTEPYLEANEQLSKEVQSQAEKICEMA---AVMRKAIE 149 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHh
Confidence 4566666677776766666666 222222222111 11223333344567778888888888864 45553332
Q ss_pred hhcCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q psy15551 158 KSCDGAGDGTEVSHYQIKQLEQQNMRLRETLV 189 (640)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~qle~qN~rLreaLv 189 (640)
- + .......---+.||+..|.-||+-|.
T Consensus 150 ~---d-e~~~~~~qe~i~qL~~EN~~LRelL~ 177 (181)
T PF05769_consen 150 L---D-EENSQEEQEIIAQLETENKGLRELLQ 177 (181)
T ss_pred c---c-hhhhHhHHHHHHHHHHHHHHHHHHHh
Confidence 1 1 11122344567899999999999874
No 397
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=30.66 E-value=4.1e+02 Score=24.03 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=22.4
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 372 QVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 372 q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
-||...-+.=.|++|+++|..|.+++..+...-+.|+
T Consensus 16 AvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~ 52 (79)
T PRK15422 16 AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELE 52 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3444444445567777777777777766665554443
No 398
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=30.60 E-value=7.6e+02 Score=27.15 Aligned_cols=99 Identities=15% Similarity=0.241 Sum_probs=54.9
Q ss_pred hhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcHHHHHH
Q psy15551 309 IFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDA----ALGAEEMVQ 384 (640)
Q Consensus 309 ~~~~~~~~~~~l~d~~~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~----a~gAEEMVE 384 (640)
|-+-+..++..| |++-+.|+.=.+++..+..++.+|.++.++.-.+|..-=..-.+.++|+.. -+..-..|.
T Consensus 109 id~~na~i~k~l----AeeNqKIq~gi~EL~Kl~~e~~~l~kTi~~TIa~lEKKFqI~~~FKekLesfa~~L~~KS~eI~ 184 (353)
T PF01540_consen 109 IDDKNAQIDKKL----AEENQKIQNGIEELKKLSNEAFELSKTINKTIAKLEKKFQIDKDFKEKLESFADLLNKKSREID 184 (353)
T ss_pred hhhhhHHHHHHH----HHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677777 666667777777777777888888887776655544322222345555432 222333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 385 QLSVQKLELEDLVSKQAEEIVDLEALQVVSDQL 417 (640)
Q Consensus 385 ELTEKNleLEEKIeELEetIeDLEaLkELnDEL 417 (640)
..+..+..+.+= ++++|+.+++++.-+
T Consensus 185 tFttv~s~k~eF------~L~ELESFKEinTtw 211 (353)
T PF01540_consen 185 TFTTVQSTKEEF------VLNELESFKEINTTW 211 (353)
T ss_pred HHHhhccchhhh------hHHHHHHHHHHHHHH
Confidence 444444444332 355566666665443
No 399
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=30.55 E-value=7e+02 Score=27.96 Aligned_cols=57 Identities=30% Similarity=0.393 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15551 88 RELEKLKQEKQEAVEAKEDTADLVETLEMMT--LDKEMAEERAETLQVELDLAKEKIEELTLD 148 (640)
Q Consensus 88 ~el~~~k~~~~e~~~~~e~~~d~~~~lem~t--ldkemaee~~e~l~~el~~~k~k~eel~le 148 (640)
+++..++.........+....++.+..+|+. -|.||. +.+..|+..++.+++.+++.
T Consensus 56 ke~~~L~~iv~~~~~l~~~~~e~~~~~ell~~e~D~el~----~~a~~e~~~l~~~l~~le~~ 114 (367)
T PRK00578 56 KELSSLKAKLDTLEELRQRLDDLEELLELAEEEDDEETL----AEAEAELKALEKKLAALELE 114 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444432 265544 44556667777777777654
No 400
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=30.54 E-value=6.5e+02 Score=26.32 Aligned_cols=45 Identities=20% Similarity=0.113 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 431 EVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAAL 475 (640)
Q Consensus 431 ELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLe 475 (640)
+-..+...+.+....|..+.+.....+.....|+..+...+..+.
T Consensus 76 Ek~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~ 120 (246)
T PF00769_consen 76 EKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEE 120 (246)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555566666666666666666666666666666554
No 401
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=30.31 E-value=74 Score=30.18 Aligned_cols=56 Identities=29% Similarity=0.454 Sum_probs=42.5
Q ss_pred hhhhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q psy15551 307 HEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTE--LEADC 366 (640)
Q Consensus 307 ~~~~~~~~~~~~~l~d~~~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~--~e~~~ 366 (640)
-+|||.-..|..+| ...-.++..+.+.+.++-.||..|+-..++|+.+|.+ ++...
T Consensus 4 keiFd~v~~le~~l----~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~~e~~~ 61 (114)
T COG4467 4 KEIFDQVDNLEEQL----GVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTLEKTA 61 (114)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCccccchh
Confidence 46777777777777 4455667888888888888888888888888888887 44443
No 402
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=30.26 E-value=7.2e+02 Score=27.80 Aligned_cols=59 Identities=31% Similarity=0.370 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy15551 88 RELEKLKQEKQEAVEAKEDTADLVETLEMMT--LDKEMAEERAETLQVELDLAKEKIEELTLDIE 150 (640)
Q Consensus 88 ~el~~~k~~~~e~~~~~e~~~d~~~~lem~t--ldkemaee~~e~l~~el~~~k~k~eel~le~e 150 (640)
+++..++..............++.+..||+. -|.+ -.+.++.++..+...+++++.++.
T Consensus 39 ~e~~~L~~~v~~~~~~~~~~~~~~~~~~l~~~e~D~~----~~~~~~~e~~~l~~~l~~~e~~l~ 99 (359)
T PRK00591 39 KEYAELEPIVEAYREYKQAQEDLEEAKEMLEEESDPE----MREMAKEELKELEERLEELEEELK 99 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444445555556666652 2443 334556667777788888876665
No 403
>KOG3433|consensus
Probab=30.18 E-value=3.7e+02 Score=27.90 Aligned_cols=46 Identities=28% Similarity=0.379 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy15551 106 DTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIEL 151 (640)
Q Consensus 106 ~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~ 151 (640)
+.+.+.+..|-.-.++|--|||.+.+..++..++..++-+..++.-
T Consensus 96 k~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k 141 (203)
T KOG3433|consen 96 KKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAK 141 (203)
T ss_pred hHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788999999999999999999999999998855544444433
No 404
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=29.83 E-value=2.3e+02 Score=29.83 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 432 VEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALES 477 (640)
Q Consensus 432 LD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL 477 (640)
|....+|=.-...|+..+++++-....+|...+..|..|+.|...|
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556677778888888888888888888888888887665
No 405
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=29.83 E-value=4.7e+02 Score=24.49 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=23.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 65 MKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE 105 (640)
Q Consensus 65 ~~~~~~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e 105 (640)
.+.+.+.+......|.......+.++.++|.++.+|.....
T Consensus 72 n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~ 112 (139)
T PF05615_consen 72 NKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQ 112 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666666666666666666654433
No 406
>PRK03830 small acid-soluble spore protein Tlp; Provisional
Probab=29.46 E-value=3.7e+02 Score=23.94 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 353 EKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 353 ~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
++|+.-+...-..|..-.+.+... ...++...|.++|..-++.|..++++|.|-.
T Consensus 12 EkLQ~mi~nTieNi~eAee~l~~~-~~~~~~~~i~eKN~RR~esi~~~R~EIkDEa 66 (73)
T PRK03830 12 EKLQEMIQNTIENIEEAEETIAEE-DSEKEKQAIEEKNERREESIDGMRSEIKDEA 66 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Confidence 444444444444555555555433 3447788899999999999999999999865
No 407
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=29.00 E-value=4e+02 Score=25.11 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 354 KLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIV 405 (640)
Q Consensus 354 ~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIe 405 (640)
..+++|+..|..+.-| ...+.|..|++....+.|+|.+|..++.
T Consensus 34 ~~~q~L~kiE~~~~~l--------~qgeqI~kL~e~V~~QGEqIkel~~e~k 77 (102)
T PF01519_consen 34 SNNQRLTKIENKLDQL--------AQGEQINKLTEKVDKQGEQIKELQVEQK 77 (102)
T ss_dssp -HTTB-BHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777755 3345566666666667777776666665
No 408
>PRK06746 peptide chain release factor 2; Provisional
Probab=28.95 E-value=3.8e+02 Score=29.61 Aligned_cols=55 Identities=24% Similarity=0.291 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 89 ELEKLKQEKQEAVEAKEDTADLVETLEMM--TLDKEMAEERAETLQVELDLAKEKIEELTL 147 (640)
Q Consensus 89 el~~~k~~~~e~~~~~e~~~d~~~~lem~--tldkemaee~~e~l~~el~~~k~k~eel~l 147 (640)
++..++.-.......+....|+.+..||+ .-|.||. +.++.|+..+..+++.+++
T Consensus 19 e~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~~d~e~~----~~a~~e~~~l~~~l~~le~ 75 (326)
T PRK06746 19 EANALKDMVGKFRQLDETFENLEITHELLKEEYDEDLH----EELESEVKGLIQEMNEYEL 75 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444555555666665 2355553 4566777777777777763
No 409
>PRK05589 peptide chain release factor 2; Provisional
Probab=28.94 E-value=3.5e+02 Score=29.87 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy15551 129 ETLQVELDLAKEKIEELTL 147 (640)
Q Consensus 129 e~l~~el~~~k~k~eel~l 147 (640)
+.+..++..++.+++.+++
T Consensus 56 ~~a~~e~~~l~~~l~~~e~ 74 (325)
T PRK05589 56 KEIISEVKNIKEEIDRFKI 74 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5556677777777777663
No 410
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=28.82 E-value=6.6e+02 Score=25.84 Aligned_cols=117 Identities=15% Similarity=0.173 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q psy15551 350 KSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-----ALQVVSDQLQEDAKEI 424 (640)
Q Consensus 350 ~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-----aLkELnDELEEnhvE~ 424 (640)
.....|-.++..++..+..-+.+.... +...+..|..+|.+|.+.|+.-- .=..+-..|.+.-..+
T Consensus 92 ~~l~~L~~ri~~L~~~i~ee~~~r~~~---------ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l 162 (247)
T PF06705_consen 92 SRLDSLNDRIEALEEEIQEEKEERPQD---------IEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRL 162 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444554444444443222 23333444444554444444433 1223344455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy15551 425 EIELKEEVEMARSATREVIREKEAALESLADRELTIVK-FRELVIREKEAAL 475 (640)
Q Consensus 425 EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsK-FRELV~~LQedLe 475 (640)
...+..|...+...+.++...+..........+..... +.+.+..+...|.
T Consensus 163 ~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~ 214 (247)
T PF06705_consen 163 QEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALA 214 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 56777777777888888888777777666555554444 5666666666665
No 411
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=28.28 E-value=5.4e+02 Score=24.71 Aligned_cols=33 Identities=27% Similarity=0.207 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 441 EVIREKEAALESLADRELTIVKFRELVIREKEA 473 (640)
Q Consensus 441 EL~rRIeq~eEqLEDlE~TIsKFRELV~~LQed 473 (640)
+.+..+..+---+.|.+..+.++|..+..|...
T Consensus 81 ~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~e 113 (136)
T PF04871_consen 81 EAQSELDDLLVLLGDLEEKRKKYKERLKELGEE 113 (136)
T ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCC
Confidence 344555566666666777777777766665443
No 412
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=28.19 E-value=3.9e+02 Score=23.07 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=27.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy15551 111 VETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELM 152 (640)
Q Consensus 111 ~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~l 152 (640)
...+-+++-.+++|.-++-.+-.+...++.+++.|.-+++-.
T Consensus 25 ~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 25 EIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666777777777777777777776666666665544
No 413
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=28.12 E-value=1.1e+03 Score=28.32 Aligned_cols=82 Identities=15% Similarity=0.114 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 389 QKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIEL--KEEVEMARSATREVIREKEAALESLADRELTIVKFRE 465 (640)
Q Consensus 389 KNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeL--REELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRE 465 (640)
+...|+.+|+.|++.|..+. .|+.+..++...-...+..+ ..+...+...++...++.......+.++-..|..+.+
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~ 159 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVE 159 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555 44444444443333222211 2222333333444444444444444444444444443
Q ss_pred HHHHH
Q psy15551 466 LVIRE 470 (640)
Q Consensus 466 LV~~L 470 (640)
.....
T Consensus 160 ~~q~~ 164 (632)
T PF14817_consen 160 QLQDI 164 (632)
T ss_pred HHHHH
Confidence 33333
No 414
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=28.04 E-value=1.7e+02 Score=31.06 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy15551 378 GAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSD 415 (640)
Q Consensus 378 gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnD 415 (640)
|+.+-+..|-.+...+.+.|..|++.|.+.+ +|..++.
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~ 215 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNR 215 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7778888888888888888888888887777 6655543
No 415
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=27.99 E-value=4.6e+02 Score=23.76 Aligned_cols=97 Identities=21% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhcHHHHHHHHHHHHHHHHHHH
Q psy15551 326 HEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCAD--------LHEQVDAALGAEEMVQQLSVQKLELEDLV 397 (640)
Q Consensus 326 ~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~--------l~~q~d~a~gAEEMVEELTEKNleLEEKI 397 (640)
..+++|-..+..|..++.+...+......=...|...+..+.+ |++--.....|....+.=+........+|
T Consensus 4 ~kkre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei 83 (126)
T PF13863_consen 4 EKKREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEI 83 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy15551 398 SKQAEEIVDLE-ALQVVSDQLQEDAK 422 (640)
Q Consensus 398 eELEetIeDLE-aLkELnDELEEnhv 422 (640)
..|..+|..+. .+..+.+.+.....
T Consensus 84 ~~l~~~l~~l~~~~~k~e~~l~~~~~ 109 (126)
T PF13863_consen 84 KKLKAELEELKSEISKLEEKLEEYKK 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 416
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=27.01 E-value=6e+02 Score=24.81 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 427 ELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAAL 475 (640)
Q Consensus 427 eLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLe 475 (640)
++..-++..-..|+++...++....++..+......+...+..|..-|.
T Consensus 37 ~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~ 85 (162)
T PF05565_consen 37 EIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLL 85 (162)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444555555444
No 417
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=26.90 E-value=7e+02 Score=25.50 Aligned_cols=48 Identities=10% Similarity=0.014 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 428 LKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAAL 475 (640)
Q Consensus 428 LREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLe 475 (640)
+..++++.+..+.....+.+=...+..-....|......+..|+..+.
T Consensus 162 l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln 209 (240)
T PF12795_consen 162 LEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLN 209 (240)
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444445555555555544444
No 418
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=26.51 E-value=4.4e+02 Score=23.05 Aligned_cols=58 Identities=28% Similarity=0.282 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 344 ENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDL 407 (640)
Q Consensus 344 ~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDL 407 (640)
-...|++++++ +...-+...++|+-+...+--- -..|..++..|..+|..|.++++.|
T Consensus 11 ale~Lq~~y~~---q~~~Wq~sy~~Lq~~~~~t~~~---~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 11 ALEELQQSYEK---QQQEWQSSYADLQHMFEQTSQE---NAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555443 5555666666666655443222 2244555555555555555554443
No 419
>KOG4787|consensus
Probab=26.37 E-value=1.2e+03 Score=28.23 Aligned_cols=149 Identities=17% Similarity=0.222 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHhhcHHHHHH---HHHHHHHHH
Q psy15551 329 HEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADC------------ADLHEQVDAALGAEEMVQ---QLSVQKLEL 393 (640)
Q Consensus 329 ~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~------------~~l~~q~d~a~gAEEMVE---ELTEKNleL 393 (640)
.+|.-+.-+++.++.-...+.+...-|..++..++++| .+.++|+|..-.--.||. ++-.+|.++
T Consensus 332 ~Q~~~~~~~~~~~~Tr~Er~Er~~D~L~rri~~~~~~~~R~~~s~A~~K~~E~K~~~~~~~~~~r~i~~~~~~~~~~~~~ 411 (852)
T KOG4787|consen 332 LQLELAESQVQHLNTKIERLEKTNDHLNKKIVELEADCKRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTISELERKNLEL 411 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHhhhhhcChHhHhHHHHHHHHHHHHHHhcccH
Confidence 45556666777777777777777788888888888776 467778776655555543 455677777
Q ss_pred HHHHHHHHHHH-----------------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q psy15551 394 EDLVSKQAEEI-----------------VDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALES--- 452 (640)
Q Consensus 394 EEKIeELEetI-----------------eDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEq--- 452 (640)
.+.+..|++.+ -.+- ++.++.|-+-+.-+..--.|+..|+.....-+=+.-++......
T Consensus 412 s~~~r~L~~~~~~~~~~~~~~~s~~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~R~q~R 491 (852)
T KOG4787|consen 412 TTQVKQLETKVTPKPNFVVPSGTTTTELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLNKLHRKQVR 491 (852)
T ss_pred HHHHHHHhhccccchhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHHHHHHh
Confidence 77777776543 2222 55566666666666666889999998888777666555544332
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 453 -----------LADRELTIVKFRELVIREKEAALES 477 (640)
Q Consensus 453 -----------LEDlE~TIsKFRELV~~LQedLeEL 477 (640)
|.-++....=..++...|+.+++.+
T Consensus 492 ~~~~~~~d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~ 527 (852)
T KOG4787|consen 492 DGEIQYSDELKIKILELEKRLSEKLAIDLVSELEGK 527 (852)
T ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2223333333344555566666554
No 420
>KOG2077|consensus
Probab=26.34 E-value=2e+02 Score=34.33 Aligned_cols=83 Identities=22% Similarity=0.430 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHHHhhhh---hhhhhHHHHHhhhhHHHHHHHHHHHhhhhhhhhHHHHhhHHHHHHHHHhHHHHHH
Q psy15551 1 MKAEIQDLKEKLDTMKIKYREK---TRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKA 77 (640)
Q Consensus 1 ~~~e~~~l~~kl~~~~~k~~ek---~~~~~~~~~ql~q~~~~k~k~~e~~~~~~~~~d~~k~~~l~~~~~~~~~~~~~k~ 77 (640)
|...|..|.+.|++++.+-.++ .++-+.-+|=.-|-..|-. -+..++-.++.| ||.
T Consensus 355 lee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTR------------------vEMaRVLMeRNq---YKE 413 (832)
T KOG2077|consen 355 LEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTR------------------VEMARVLMERNQ---YKE 413 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHH------------------HHHHHHHHHHhH---HHH
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy15551 78 KIMESQAGLK-RELEKLKQEKQEAVEAK 104 (640)
Q Consensus 78 ~~~~~~~~~~-~el~~~k~~~~e~~~~~ 104 (640)
++|++|.... .|...++++-.-.++.|
T Consensus 414 rLMELqEavrWTEMiRAsre~p~vqeKK 441 (832)
T KOG2077|consen 414 RLMELQEAVRWTEMIRASRENPAVQEKK 441 (832)
T ss_pred HHHHHHHHHhHHHHHHHhhcCchhhhhc
No 421
>KOG2150|consensus
Probab=26.19 E-value=1.2e+03 Score=27.95 Aligned_cols=50 Identities=12% Similarity=0.013 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 426 IELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALES 477 (640)
Q Consensus 426 KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL 477 (640)
++-++-.+.+...|.+|.+++...+. +.++..|.+.|-.+..|.-.|.-+
T Consensus 118 kek~d~~~wi~~~ideLe~q~d~~ea--~~~e~~~erh~~H~~~lEliLr~L 167 (575)
T KOG2150|consen 118 KEKRDTMDWISNQIDELERQVDSFEA--EELERFIERHRWHQQKLELILRLL 167 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66678889999999999999988887 778999999999999998887754
No 422
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=26.15 E-value=6.4e+02 Score=24.80 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15551 355 LKQRVTELEADCADLHEQVD 374 (640)
Q Consensus 355 l~~kL~~~e~~~~~l~~q~d 374 (640)
+....-...+.|+.|+..+.
T Consensus 49 ~e~~~~~~~a~~~eLr~el~ 68 (177)
T PF07798_consen 49 LENQEYLFKAAIAELRSELQ 68 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 43444445566666665554
No 423
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=26.08 E-value=6e+02 Score=24.50 Aligned_cols=61 Identities=16% Similarity=0.264 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 345 NAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 345 ~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
.+.|...+..|.+++..+...+++ |.+..-...+.|.++..........+..+...|..|+
T Consensus 56 s~~l~~tKkhLsqRId~vd~klDe---~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le 116 (126)
T PF07889_consen 56 SESLSSTKKHLSQRIDRVDDKLDE---QKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLE 116 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433322 2222223333344444444444444444444444444
No 424
>KOG0796|consensus
Probab=25.61 E-value=9.6e+02 Score=26.68 Aligned_cols=11 Identities=45% Similarity=0.546 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q psy15551 352 QEKLKQRVTEL 362 (640)
Q Consensus 352 ~~~l~~kL~~~ 362 (640)
.++.+++|.+.
T Consensus 99 i~~~kerL~e~ 109 (319)
T KOG0796|consen 99 IEKAKERLAET 109 (319)
T ss_pred HHHHHHHHHhh
Confidence 33344444433
No 425
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=25.61 E-value=3.2e+02 Score=28.16 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 384 QQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 384 EELTEKNleLEEKIeELEetIeDLE 408 (640)
+.+|++..+++.+++.++.....|.
T Consensus 128 ~DvT~~y~D~~arl~~l~~~~~rl~ 152 (262)
T PF14257_consen 128 EDVTEQYVDLEARLKNLEAEEERLL 152 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554444
No 426
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=25.39 E-value=4.5e+02 Score=22.77 Aligned_cols=74 Identities=23% Similarity=0.259 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 332 SKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQV------DAALGAEEMVQQLSVQKLELEDLVSKQAEEIV 405 (640)
Q Consensus 332 ~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~------d~a~gAEEMVEELTEKNleLEEKIeELEetIe 405 (640)
.-+.-.++.....+.++..+|..|...+...-....++.+-. |-+- .-.-+..+..+...+.+++..++..+.
T Consensus 10 ~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~ 88 (92)
T PF14712_consen 10 SLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRAD 88 (92)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777888888888888777777777666666511 1122 334455555555555555555555544
Q ss_pred H
Q psy15551 406 D 406 (640)
Q Consensus 406 D 406 (640)
.
T Consensus 89 ~ 89 (92)
T PF14712_consen 89 K 89 (92)
T ss_pred h
Confidence 3
No 427
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=25.03 E-value=1.3e+03 Score=27.90 Aligned_cols=52 Identities=27% Similarity=0.355 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 426 IELKEEVEMARSATREVIRE---KEAALESLADRELTIVKFRELVIREKEAALES 477 (640)
Q Consensus 426 KeLREELD~kdsqIrEL~rR---Ieq~eEqLEDlE~TIsKFRELV~~LQedLeEL 477 (640)
-.++..++.+......+... -......+..-.+.|..|+.+|...|+.+..+
T Consensus 361 ~~l~A~l~~L~se~q~L~~~~~~r~e~~~~Lq~K~q~I~~frqlv~e~QeqIr~L 415 (632)
T PF14817_consen 361 AGLKASLNALRSECQRLKEAAAERQEALRSLQAKWQRILDFRQLVSEKQEQIRAL 415 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666555555544444 44444555667789999999999999999977
No 428
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=24.93 E-value=1.1e+03 Score=27.14 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 355 LKQRVTELEADCADLHEQVDAALGA----EEMVQQLSVQKLELEDLVSKQAEEI 404 (640)
Q Consensus 355 l~~kL~~~e~~~~~l~~q~d~a~gA----EEMVEELTEKNleLEEKIeELEetI 404 (640)
+-.-+..++.++.+++-+++...+. -+.|..|..++..|+.+|...+..+
T Consensus 284 ~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 284 IYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555555555544332 3555566666666666555555555
No 429
>KOG1853|consensus
Probab=24.55 E-value=9.5e+02 Score=26.28 Aligned_cols=47 Identities=19% Similarity=0.349 Sum_probs=23.3
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 316 FDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTEL 362 (640)
Q Consensus 316 ~~~~l~d~~~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~ 362 (640)
|..--|.+++....++..+...+..+...+..|...++.+|.+....
T Consensus 39 FQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q 85 (333)
T KOG1853|consen 39 FQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQ 85 (333)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44334445555555555555555555555555555555544444433
No 430
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=24.24 E-value=3.5e+02 Score=29.93 Aligned_cols=9 Identities=44% Similarity=0.911 Sum_probs=4.0
Q ss_pred hhhcccccc
Q psy15551 308 EIFNNKNKF 316 (640)
Q Consensus 308 ~~~~~~~~~ 316 (640)
+.|.++++|
T Consensus 225 ~~f~d~a~~ 233 (406)
T PF02388_consen 225 DAFGDKAKF 233 (406)
T ss_dssp HHCCCCEEE
T ss_pred HhcCCCeEE
Confidence 344444444
No 431
>smart00338 BRLZ basic region leucin zipper.
Probab=24.24 E-value=3.7e+02 Score=22.06 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15551 386 LSVQKLELEDLVSKQAEEIVDL 407 (640)
Q Consensus 386 LTEKNleLEEKIeELEetIeDL 407 (640)
|+.+|..|..++..|+..+..|
T Consensus 38 L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 38 LEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444433333
No 432
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=24.20 E-value=2.3e+02 Score=28.97 Aligned_cols=61 Identities=25% Similarity=0.372 Sum_probs=38.3
Q ss_pred cccchhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 314 NKFDSRLRDLSAHEKHEMSKLQKDI-EEKKQENAELIKSQEKLKQRVTELEADCADLHEQVD 374 (640)
Q Consensus 314 ~~~~~~l~d~~~~~k~~~~~~~~~~-e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d 374 (640)
|.|..++-|+|-+.-.+-+-.=+++ ++..-|...|+.--+.+++++.++|-+..|--.+|+
T Consensus 115 n~FR~qm~dlE~~l~~QQalvy~hMSeeER~EaeQLQsLR~avRqElqELE~QL~DRl~~l~ 176 (179)
T PF14723_consen 115 NSFREQMMDLELHLMRQQALVYRHMSEEEREEAEQLQSLRSAVRQELQELEFQLEDRLLQLR 176 (179)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666555544444444 444556667777777788888888877777655554
No 433
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=24.15 E-value=5.7e+02 Score=24.37 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15551 386 LSVQKLELEDLVSKQAEEIVDL 407 (640)
Q Consensus 386 LTEKNleLEEKIeELEetIeDL 407 (640)
...+....+..+..+...|.+|
T Consensus 117 ~~~~~~~~e~~~~~~~~riaEl 138 (139)
T PF13935_consen 117 LAEQAEAYEGEIADYAKRIAEL 138 (139)
T ss_pred HhHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444444444
No 434
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=24.06 E-value=6.8e+02 Score=24.43 Aligned_cols=67 Identities=18% Similarity=0.199 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhh-cHHHHHHHHHHHHHHH
Q psy15551 327 EKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADL---HEQVDAAL-GAEEMVQQLSVQKLEL 393 (640)
Q Consensus 327 ~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l---~~q~d~a~-gAEEMVEELTEKNleL 393 (640)
.++.+...++.+...++.+..+......|......-+..-+.| ..++++.+ ..+..|+.|..+|..+
T Consensus 24 l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~l 94 (135)
T TIGR03495 24 ARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDL 94 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 3444555555555555555555555555555553333333333 33443332 3446666666666554
No 435
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=24.05 E-value=4.5e+02 Score=22.38 Aligned_cols=81 Identities=21% Similarity=0.334 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy15551 344 ENAELIKSQEKLKQRVTELEADCADLHEQVDAAL-GAE-EMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQED 420 (640)
Q Consensus 344 ~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~-gAE-EMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEn 420 (640)
.+++..........++..+...+.++..++.... |.. ..+-....-...|...|..++..+..++ .+......+.+.
T Consensus 6 ~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a 85 (123)
T PF02050_consen 6 ELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEA 85 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555556666666655554444 111 2233344444455555555555555555 444445555555
Q ss_pred HHHH
Q psy15551 421 AKEI 424 (640)
Q Consensus 421 hvE~ 424 (640)
+.+.
T Consensus 86 ~~~~ 89 (123)
T PF02050_consen 86 RRER 89 (123)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 436
>smart00338 BRLZ basic region leucin zipper.
Probab=23.97 E-value=3.1e+02 Score=22.50 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q psy15551 358 RVTELEADCADLHE 371 (640)
Q Consensus 358 kL~~~e~~~~~l~~ 371 (640)
++..++..+..|+.
T Consensus 48 ~~~~l~~e~~~lk~ 61 (65)
T smart00338 48 EIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444443
No 437
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=23.89 E-value=5.7e+02 Score=23.44 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy15551 354 KLKQRVTELEADCADL 369 (640)
Q Consensus 354 ~l~~kL~~~e~~~~~l 369 (640)
....+++.+|..++.|
T Consensus 46 ~~~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 46 EHDRRLQALETKLEHL 61 (106)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 3444444444444443
No 438
>PLN02678 seryl-tRNA synthetase
Probab=23.84 E-value=4.5e+02 Score=30.08 Aligned_cols=18 Identities=28% Similarity=0.261 Sum_probs=14.3
Q ss_pred chhhHHHHHHHHHHHhhh
Q psy15551 581 STENIEKCVTYFNTFYPV 598 (640)
Q Consensus 581 ~~E~FEKI~~YFn~IFsv 598 (640)
|...|+.+...-..||..
T Consensus 301 s~~~~e~~l~~~~~i~~~ 318 (448)
T PLN02678 301 SWEMHEEMLKNSEDFYQS 318 (448)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 778888888888888754
No 439
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=23.82 E-value=6.5e+02 Score=28.35 Aligned_cols=47 Identities=23% Similarity=0.234 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 360 TELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDL 407 (640)
Q Consensus 360 ~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDL 407 (640)
..+..++++.++-+... .--+|.+-..+....++.++.+|++.+.-|
T Consensus 56 ~~~~~~l~~a~~~l~~~-~D~em~ema~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 56 KKAQEDLEDAKEMLAEE-KDPEMREMAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred HHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566666665544 223455555555555555555555555444
No 440
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=23.78 E-value=5.6e+02 Score=26.54 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=26.9
Q ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 375 AALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQL 417 (640)
Q Consensus 375 ~a~gAEEMVEELTEKNleLEEKIeELEetIeDLEaLkELnDEL 417 (640)
.....-.-..++.++|..|.+++.+|+..+.+++.++.-+++|
T Consensus 63 ~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L 105 (276)
T PRK13922 63 GVFESLASLFDLREENEELKKELLELESRLQELEQLEAENARL 105 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334455677778888888888777777776554433333
No 441
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=23.58 E-value=5.8e+02 Score=28.57 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 381 EMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 381 EMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
.++..+......+.+++.+|++.+..+.
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 402 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKELK 402 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544
No 442
>KOG0976|consensus
Probab=23.56 E-value=1.6e+03 Score=28.48 Aligned_cols=31 Identities=26% Similarity=0.257 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 380 EEMVQQLSVQKLELEDLVSKQAEEIVDLEAL 410 (640)
Q Consensus 380 EEMVEELTEKNleLEEKIeELEetIeDLEaL 410 (640)
+..+..|++.-.+++++|.+++..|--++.+
T Consensus 378 e~elqsL~~l~aerqeQidelKn~if~~e~~ 408 (1265)
T KOG0976|consen 378 EEELQSLLELQAERQEQIDELKNHIFRLEQG 408 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 3445555555556666666666666666643
No 443
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=23.44 E-value=9.4e+02 Score=25.81 Aligned_cols=18 Identities=11% Similarity=0.021 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15551 438 ATREVIREKEAALESLAD 455 (640)
Q Consensus 438 qIrEL~rRIeq~eEqLED 455 (640)
++..+...++.....+.+
T Consensus 166 ~l~~~~~~l~~~~~~l~~ 183 (370)
T PRK11578 166 QIKRNQASLDTAKTNLDY 183 (370)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 334444444444444443
No 444
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=23.44 E-value=8.6e+02 Score=25.39 Aligned_cols=90 Identities=10% Similarity=0.176 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cChhhHHhhHHhhhhhhhhc-----
Q psy15551 426 IELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESL--ADRELTIVKFRELNSLDEKV----- 498 (640)
Q Consensus 426 KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL~--~~~~~~~~~~sasKA~~k~I----- 498 (640)
.....++..++..+.-+.... ....+...+.+|..+...+...+.+.+... .-.++-.+.-.....+...|
T Consensus 136 ~~a~~~L~kkr~~~~Kl~~~~--k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fle 213 (234)
T cd07664 136 QDAQVTLQKKREAEAKLQYAN--KPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLE 213 (234)
T ss_pred HHHHHHHHHHHHHHHHHhhcC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555544432211 123444555555555555555555555441 12233222211111111112
Q ss_pred -chHHHHHHHhHhHhhcCCC
Q psy15551 499 -STENIEKCVTYFNTFYPVL 517 (640)
Q Consensus 499 -EaeqA~~hl~~l~~FLPds 517 (640)
-++-+.+.+.+|-.|+|..
T Consensus 214 s~ie~qke~ie~We~f~p~~ 233 (234)
T cd07664 214 SLVQTQQQLIKYWEAFLPEA 233 (234)
T ss_pred HHHHHHHHHHHHHHHhhhcc
Confidence 2445567799999999973
No 445
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=23.42 E-value=4.7e+02 Score=29.42 Aligned_cols=18 Identities=11% Similarity=0.111 Sum_probs=10.2
Q ss_pred cchhhHHHHHHHHHHHhh
Q psy15551 580 GSTENIEKCVTYFNTFYP 597 (640)
Q Consensus 580 ~~~E~FEKI~~YFn~IFs 597 (640)
.+...|+.+......+|.
T Consensus 293 ~s~~~~~~~l~~~~~i~~ 310 (425)
T PRK05431 293 DSYAELEELTANAEEILQ 310 (425)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345556666666666653
No 446
>PF14282 FlxA: FlxA-like protein
Probab=23.28 E-value=3.3e+02 Score=24.95 Aligned_cols=11 Identities=18% Similarity=0.598 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q psy15551 329 HEMSKLQKDIE 339 (640)
Q Consensus 329 ~~~~~~~~~~e 339 (640)
.++..|+++|.
T Consensus 26 ~Qi~~Lq~ql~ 36 (106)
T PF14282_consen 26 KQIKQLQEQLQ 36 (106)
T ss_pred HHHHHHHHHHH
Confidence 33434443333
No 447
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=23.16 E-value=4.7e+02 Score=22.22 Aligned_cols=36 Identities=8% Similarity=0.056 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 433 EMARSATREVIREKEAALESLADRELTIVKFRELVI 468 (640)
Q Consensus 433 D~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~ 468 (640)
-|.+..|.++..-+..+...|..++..+..+++.+.
T Consensus 14 a~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 14 AFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 448
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=23.11 E-value=7.9e+02 Score=24.80 Aligned_cols=83 Identities=22% Similarity=0.240 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 386 LSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFR 464 (640)
Q Consensus 386 LTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFR 464 (640)
+..+.+..-++|...-..+++-. .|..+..+|+..- .=+|+|+......|....+++.-+...+..-+.....+-
T Consensus 43 IErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~----dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykeal 118 (159)
T PF04949_consen 43 IERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLA----DPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEAL 118 (159)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhc----cchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34566666677776666666666 6666666666332 345777777777777777777766666665554444444
Q ss_pred HHHHHHHH
Q psy15551 465 ELVIREKE 472 (640)
Q Consensus 465 ELV~~LQe 472 (640)
+.....+.
T Consensus 119 ea~nEknk 126 (159)
T PF04949_consen 119 EAFNEKNK 126 (159)
T ss_pred HHHHHHHH
Confidence 44444333
No 449
>KOG4438|consensus
Probab=23.10 E-value=1.2e+03 Score=26.99 Aligned_cols=139 Identities=20% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhcHHHHHHHHHHHHHHHHHHHH----------------
Q psy15551 339 EEKKQENAELIKSQEKLKQRVTELEADCADLHEQV----DAALGAEEMVQQLSVQKLELEDLVS---------------- 398 (640)
Q Consensus 339 e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~----d~a~gAEEMVEELTEKNleLEEKIe---------------- 398 (640)
++.........-..+.+-..-+++.+.+.++..++ +++...++.+.+|.++|.+|...+-
T Consensus 127 e~k~~~~~~~~~q~eslle~~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~ 206 (446)
T KOG4438|consen 127 EEKMDLYRPFIQQLESLLELRKQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKM 206 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 399 ---KQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAAL 475 (640)
Q Consensus 399 ---ELEetIeDLEaLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLe 475 (640)
.-.+.+..++++.-+-..|+++..-+....-..-+.+..-+.+..-.+........+++..-.-+.+.|..++.-..
T Consensus 207 k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~ 286 (446)
T KOG4438|consen 207 KKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEK 286 (446)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q ss_pred hh
Q psy15551 476 ES 477 (640)
Q Consensus 476 EL 477 (640)
++
T Consensus 287 e~ 288 (446)
T KOG4438|consen 287 EL 288 (446)
T ss_pred HH
No 450
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=23.02 E-value=4.1e+02 Score=24.91 Aligned_cols=34 Identities=18% Similarity=0.411 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 342 KQENAELIKSQEKLKQRVTELEADCADLHEQVDA 375 (640)
Q Consensus 342 ~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~ 375 (640)
+.+...+......+......+...|++|+.+|..
T Consensus 73 ~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ 106 (139)
T PF05615_consen 73 KRERENYEQLNEEIEQEIEQAKKEIEELKEELEE 106 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444443
No 451
>PHA01750 hypothetical protein
Probab=23.02 E-value=3.9e+02 Score=23.61 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 342 KQENAELIKSQEKLKQRVTELEADCADLHEQVD 374 (640)
Q Consensus 342 ~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d 374 (640)
++|+..|....+.++.+..+++.+|.+++..||
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 445555555555555555666666666666555
No 452
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=23.00 E-value=1.2e+03 Score=26.84 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy15551 118 TLDKEMAEERAETLQVELDLAKEKIEELTLDIELMK 153 (640)
Q Consensus 118 tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk 153 (640)
++.++...+-.+.+..|-..-..+++++...|+-|.
T Consensus 356 e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le 391 (582)
T PF09731_consen 356 ELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALE 391 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344454444444444444444555555555555443
No 453
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=22.12 E-value=9.1e+02 Score=25.20 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy15551 357 QRVTELEADCADLHEQVDAALGAEEMVQQLSVQ 389 (640)
Q Consensus 357 ~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEK 389 (640)
..+..+.+.+...+.+++.|----+....|-++
T Consensus 97 ~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~ 129 (327)
T TIGR02971 97 KDVAAQQATLNRLEAELETAQREVDRYRSLFRD 129 (327)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444444444444444444444444444433
No 454
>PF14282 FlxA: FlxA-like protein
Probab=22.03 E-value=4.9e+02 Score=23.83 Aligned_cols=21 Identities=5% Similarity=0.175 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy15551 426 IELKEEVEMARSATREVIREK 446 (640)
Q Consensus 426 KeLREELD~kdsqIrEL~rRI 446 (640)
..|+.+|..+..+|..+..+.
T Consensus 54 q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 54 QLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444443
No 455
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=22.00 E-value=3.5e+02 Score=24.91 Aligned_cols=13 Identities=23% Similarity=0.468 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q psy15551 335 QKDIEEKKQENAE 347 (640)
Q Consensus 335 ~~~~e~~~~~~~~ 347 (640)
+.+++..+++++.
T Consensus 33 ~~q~~~~~~e~~~ 45 (105)
T PRK00888 33 NDQVAAQQQTNAK 45 (105)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 456
>KOG3850|consensus
Probab=21.86 E-value=1.3e+03 Score=26.71 Aligned_cols=86 Identities=30% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhhhhHHHH-------
Q psy15551 62 LDEMKIQLDQSAEFKAKIMESQAGLK-RELEKLKQEKQEAVEAKEDTADLVETL---------EMMTLDKEMA------- 124 (640)
Q Consensus 62 l~~~~~~~~~~~~~k~~~~~~~~~~~-~el~~~k~~~~e~~~~~e~~~d~~~~l---------em~tldkema------- 124 (640)
|+.+..++....++.+.|.++...|+ +=..+.+=-.+-++|.+-.+..|+|.| ||++|-.|.|
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeerva 341 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVA 341 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 125 ---EERAETLQVELDLAKEKIEELTL 147 (640)
Q Consensus 125 ---ee~~e~l~~el~~~k~k~eel~l 147 (640)
-||+...|.-++.++-+|-.|++
T Consensus 342 YQsyERaRdIqEalEscqtrisKlEl 367 (455)
T KOG3850|consen 342 YQSYERARDIQEALESCQTRISKLEL 367 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 457
>PRK09343 prefoldin subunit beta; Provisional
Probab=21.62 E-value=6.7e+02 Score=23.45 Aligned_cols=39 Identities=10% Similarity=0.285 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 333 KLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHE 371 (640)
Q Consensus 333 ~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~ 371 (640)
.....+....+....+......+...+.+.+....+|..
T Consensus 11 ~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~ 49 (121)
T PRK09343 11 AQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEK 49 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333444444445555555555566666666666666653
No 458
>KOG4603|consensus
Probab=21.60 E-value=7.8e+02 Score=25.46 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q psy15551 383 VQQLSVQKLELEDLVSKQAEEIVDLE---ALQVVSDQLQEDAKE 423 (640)
Q Consensus 383 VEELTEKNleLEEKIeELEetIeDLE---aLkELnDELEEnhvE 423 (640)
+..|+++..+|...+.-++++|..|. .+.++++++++...+
T Consensus 88 i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~ke 131 (201)
T KOG4603|consen 88 IVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 44455555556666666666666555 344555555544433
No 459
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=21.58 E-value=1.5e+03 Score=27.61 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=14.0
Q ss_pred hhhhhHHHHHhhhhHHHH
Q psy15551 23 TRDLDEMKIQLDQSAEFK 40 (640)
Q Consensus 23 ~~~~~~~~~ql~q~~~~k 40 (640)
+.+.++++..|++..+|.
T Consensus 37 ~~~~~~i~~~l~~~~e~~ 54 (782)
T PRK00409 37 ETDFEEVEELLEETDEAA 54 (782)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 356778888888888887
No 460
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=21.52 E-value=5.4e+02 Score=22.34 Aligned_cols=62 Identities=24% Similarity=0.373 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHH
Q psy15551 336 KDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSK 399 (640)
Q Consensus 336 ~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeE 399 (640)
.-+................+......++..+...+.+|++.. +.++.-|.++...|-.+|+.
T Consensus 7 ~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f--~~l~~~L~~~e~~ll~~l~~ 68 (127)
T smart00502 7 ELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAF--DELRNALNKRKKQLLEDLEE 68 (127)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555666666667777777777776654 45555555555555444443
No 461
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=21.35 E-value=5.6e+02 Score=22.44 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy15551 381 EMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQL 417 (640)
Q Consensus 381 EMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDEL 417 (640)
+-++.+-.+|-+|.-.+..|..++..+. .|.++...+
T Consensus 36 ~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 36 ESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666667777777777776666 555555444
No 462
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.24 E-value=4.5e+02 Score=24.82 Aligned_cols=20 Identities=25% Similarity=0.513 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15551 328 KHEMSKLQKDIEEKKQENAE 347 (640)
Q Consensus 328 k~~~~~~~~~~e~~~~~~~~ 347 (640)
+.++.+.+.+++.+++++.+
T Consensus 31 ~~eL~~~k~el~~yk~~V~~ 50 (128)
T PF06295_consen 31 EQELEQAKQELEQYKQEVND 50 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 463
>PRK14127 cell division protein GpsB; Provisional
Probab=21.11 E-value=4.5e+02 Score=24.79 Aligned_cols=35 Identities=31% Similarity=0.383 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 334 LQKDIEEKKQENAELIKSQEKLKQRVTELEADCAD 368 (640)
Q Consensus 334 ~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~ 368 (640)
..++++.+..++.+|......|+.++.++++.+..
T Consensus 35 V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 35 VIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34555666666666555555555555555444443
No 464
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=21.03 E-value=5.4e+02 Score=27.44 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 341 KKQENAELIKSQEKLKQRVTELEADCADLHEQVDAAL 377 (640)
Q Consensus 341 ~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~ 377 (640)
....++.|...+..+...+..+|+.|++-+.||+.--
T Consensus 178 a~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n 214 (259)
T PF08657_consen 178 AREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMN 214 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666777777777778888888888888887653
No 465
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=20.86 E-value=8e+02 Score=24.06 Aligned_cols=39 Identities=13% Similarity=0.316 Sum_probs=25.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 65 MKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEA 103 (640)
Q Consensus 65 ~~~~~~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~~~ 103 (640)
+...++.....+....+..+..+.+|.+.+.+.++....
T Consensus 63 I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~ 101 (184)
T PRK13455 63 IRSELEEARALREEAQTLLASYERKQREVQEQADRIVAA 101 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666777777777777777777666544
No 466
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.74 E-value=4.4e+02 Score=27.69 Aligned_cols=43 Identities=12% Similarity=0.232 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 333 KLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDA 375 (640)
Q Consensus 333 ~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~ 375 (640)
.|+..|+.++++++.|....|.+.-++.++...-.|+-.+||.
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555554
No 467
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=20.58 E-value=3.1e+02 Score=26.61 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15551 336 KDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALG 378 (640)
Q Consensus 336 ~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~g 378 (640)
..+.+....+..+.....+|+.++..-.+.|..|+++++.+..
T Consensus 80 a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~ 122 (131)
T PF04859_consen 80 AEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNR 122 (131)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556667777788888999999999999998876543
No 468
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=20.39 E-value=6.3e+02 Score=22.69 Aligned_cols=48 Identities=6% Similarity=0.022 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 426 IELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEA 473 (640)
Q Consensus 426 KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQed 473 (640)
.......+.+...+..+...+....+.+..+..+-..|+..+..+..+
T Consensus 48 fa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~~~~~~l~~~Eke 95 (96)
T PF08647_consen 48 FAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETEKEFVRKLKNLEKE 95 (96)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445566677777777777777788888887777778888887776543
No 469
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=20.08 E-value=6.5e+02 Score=25.89 Aligned_cols=52 Identities=31% Similarity=0.455 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q psy15551 355 LKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVS 414 (640)
Q Consensus 355 l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELn 414 (640)
+..++..+++..+.|.+.++.|--.+++++ ++.++...+.+|+.++ .++.++
T Consensus 137 ~~arl~~l~~~~~rl~~ll~ka~~~~d~l~--------ie~~L~~v~~eIe~~~~~~~~l~ 189 (262)
T PF14257_consen 137 LEARLKNLEAEEERLLELLEKAKTVEDLLE--------IERELSRVRSEIEQLEGQLKYLD 189 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666665555554443 4444444444444444 343333
No 470
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=20.01 E-value=1.2e+03 Score=25.80 Aligned_cols=134 Identities=20% Similarity=0.196 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--HHH
Q psy15551 339 EEKKQENAELIKSQEKLKQRVTELEADCADLHEQ-VDAALGAEEMVQ----QLSVQKLELEDLVSKQAEEIVDLE--ALQ 411 (640)
Q Consensus 339 e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q-~d~a~gAEEMVE----ELTEKNleLEEKIeELEetIeDLE--aLk 411 (640)
..+.+++..|.......+.+...+...+..|++. |..+.-+|..=| .|-.+...|...-+.|-..++.-| --.
T Consensus 30 ~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn 109 (310)
T PF09755_consen 30 ESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTN 109 (310)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444555555555432 333344443322 333344444444444433333222 122
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 412 VVSDQLQ---EDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAAL 475 (640)
Q Consensus 412 ELnDELE---EnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLe 475 (640)
.++..|. .-+++++..|..|-++ .+..+.++|..+......+..++.++|..--++...|+
T Consensus 110 ~L~rkl~qLr~EK~~lE~~Le~EqE~---~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE 173 (310)
T PF09755_consen 110 DLSRKLNQLRQEKVELENQLEQEQEY---LVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLE 173 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Confidence 2222222 2333444444444332 23344444445544444455555555555544555544
Done!