Query psy15551
Match_columns 640
No_of_seqs 252 out of 280
Neff 3.7
Searched_HMMs 29240
Date Sat Aug 17 00:13:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15551.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15551hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 98.4 7.2E-07 2.5E-11 105.2 10.2 33 124-156 911-943 (1184)
2 1c1g_A Tropomyosin; contractIl 98.4 0.0017 5.9E-08 60.2 42.9 35 437-471 244-278 (284)
3 1c1g_A Tropomyosin; contractIl 98.3 0.002 7E-08 59.8 42.8 15 7-21 3-17 (284)
4 2dfs_A Myosin-5A; myosin-V, in 96.9 0.023 7.9E-07 67.3 18.1 74 332-408 931-1004(1080)
5 3na7_A HP0958; flagellar bioge 96.7 0.15 5E-06 50.8 20.1 49 328-376 38-86 (256)
6 2fxo_A Myosin heavy chain, car 96.6 0.11 3.7E-06 47.2 16.8 93 327-422 11-107 (129)
7 3na7_A HP0958; flagellar bioge 96.5 0.19 6.6E-06 49.9 19.2 124 345-477 20-144 (256)
8 3vkg_A Dynein heavy chain, cyt 95.7 4.2 0.00014 53.6 30.1 74 332-408 2031-2104(3245)
9 2dfs_A Myosin-5A; myosin-V, in 95.5 0.41 1.4E-05 56.8 18.6 70 378-451 981-1051(1080)
10 3bas_A Myosin heavy chain, str 95.4 0.16 5.6E-06 43.7 11.2 77 326-405 11-87 (89)
11 3oja_B Anopheles plasmodium-re 94.3 0.84 2.9E-05 49.0 15.7 46 429-474 536-581 (597)
12 3vkg_A Dynein heavy chain, cyt 94.2 6.9 0.00023 51.7 26.1 118 353-477 1979-2103(3245)
13 3oja_B Anopheles plasmodium-re 93.7 0.51 1.7E-05 50.7 12.6 31 344-374 457-487 (597)
14 2fxo_A Myosin heavy chain, car 93.3 1.9 6.5E-05 39.1 13.9 77 329-408 48-124 (129)
15 3kta_B Chromosome segregation 92.9 0.021 7.2E-07 53.8 0.3 44 582-629 10-53 (173)
16 2efr_A General control protein 92.8 6.8 0.00023 37.2 24.3 75 335-412 13-88 (155)
17 2v71_A Nuclear distribution pr 91.7 10 0.00036 37.0 21.5 51 426-476 105-155 (189)
18 2v71_A Nuclear distribution pr 91.5 11 0.00038 36.9 23.4 16 459-474 162-177 (189)
19 3mq7_A Bone marrow stromal ant 90.4 2.8 9.5E-05 38.4 11.2 72 86-158 30-103 (121)
20 3ghg_A Fibrinogen alpha chain; 89.3 14 0.00049 41.1 17.8 64 118-184 125-188 (562)
21 1l8d_A DNA double-strand break 86.1 6.3 0.00022 34.0 10.5 39 380-418 63-102 (112)
22 3tnu_B Keratin, type II cytosk 85.5 17 0.00059 32.6 13.4 10 456-465 115-124 (129)
23 3tnu_A Keratin, type I cytoske 85.1 16 0.00056 32.9 13.1 11 456-466 117-127 (131)
24 3o0z_A RHO-associated protein 84.8 29 0.001 33.4 18.1 105 347-462 31-136 (168)
25 2zqm_A Prefoldin beta subunit 84.7 15 0.00051 31.6 12.2 86 334-419 11-109 (117)
26 3hnw_A Uncharacterized protein 84.1 9.4 0.00032 35.3 11.1 26 383-408 105-130 (138)
27 3ol1_A Vimentin; structural ge 83.9 21 0.00072 32.0 13.1 68 331-408 36-103 (119)
28 3hnw_A Uncharacterized protein 82.7 14 0.00046 34.3 11.6 26 381-406 110-135 (138)
29 3mq9_A Bone marrow stromal ant 82.4 30 0.001 36.3 15.6 68 351-418 398-467 (471)
30 2lw1_A ABC transporter ATP-bin 82.1 8.9 0.00031 32.5 9.4 58 354-411 26-86 (89)
31 3o0z_A RHO-associated protein 81.9 38 0.0013 32.6 22.2 36 440-475 93-128 (168)
32 3mq9_A Bone marrow stromal ant 81.9 41 0.0014 35.2 16.5 97 362-462 371-468 (471)
33 3ghg_A Fibrinogen alpha chain; 81.1 16 0.00053 40.8 13.1 29 427-455 114-142 (562)
34 2ocy_A RAB guanine nucleotide 80.1 42 0.0014 31.9 17.6 28 450-477 114-141 (154)
35 2ocy_A RAB guanine nucleotide 79.9 42 0.0014 31.9 16.2 36 440-475 111-146 (154)
36 3oja_A Leucine-rich immune mol 79.7 48 0.0017 34.8 16.2 30 426-455 445-474 (487)
37 3u1c_A Tropomyosin alpha-1 cha 79.1 32 0.0011 30.0 15.6 16 434-449 83-98 (101)
38 1l8d_A DNA double-strand break 78.4 28 0.00097 29.9 11.6 29 434-462 68-96 (112)
39 1ic2_A Tropomyosin alpha chain 77.4 10 0.00035 31.8 8.2 72 110-195 4-75 (81)
40 2eqb_B RAB guanine nucleotide 76.4 41 0.0014 29.8 14.0 14 354-367 9-22 (97)
41 3tnu_B Keratin, type II cytosk 75.9 37 0.0013 30.5 12.0 27 397-423 77-104 (129)
42 3d5a_X RF1, peptide chain rele 75.1 13 0.00043 39.5 10.0 61 88-153 36-96 (354)
43 3swk_A Vimentin; cytoskeleton, 74.9 27 0.00092 29.8 10.2 68 330-407 15-82 (86)
44 2efr_A General control protein 74.8 58 0.002 30.8 20.3 98 379-476 33-130 (155)
45 1m1j_B Fibrinogen beta chain; 74.7 75 0.0026 34.8 16.1 31 378-408 118-148 (464)
46 3bas_A Myosin heavy chain, str 73.8 41 0.0014 28.7 11.1 28 390-417 58-86 (89)
47 3i00_A HIP-I, huntingtin-inter 72.7 16 0.00055 33.2 8.8 66 80-145 46-118 (120)
48 2v4h_A NF-kappa-B essential mo 72.3 21 0.00073 32.3 9.3 36 3-38 24-59 (110)
49 1ik9_A DNA repair protein XRCC 71.4 71 0.0024 31.4 13.7 64 385-448 136-200 (213)
50 2jee_A YIIU; FTSZ, septum, coi 70.7 51 0.0017 28.4 11.3 22 383-404 29-50 (81)
51 3u59_A Tropomyosin beta chain; 69.9 54 0.0018 28.3 14.4 17 433-449 82-98 (101)
52 1deq_A Fibrinogen (alpha chain 69.6 68 0.0023 34.5 13.9 19 389-407 61-79 (390)
53 1fxk_A Prefoldin; archaeal pro 69.5 51 0.0017 27.8 11.4 76 343-418 15-103 (107)
54 2eqb_B RAB guanine nucleotide 69.2 61 0.0021 28.7 13.5 80 326-407 9-95 (97)
55 3ol1_A Vimentin; structural ge 68.7 65 0.0022 28.8 15.2 40 330-376 21-60 (119)
56 3ni0_A Bone marrow stromal ant 68.7 37 0.0013 30.2 9.8 60 86-146 23-87 (99)
57 3efg_A Protein SLYX homolog; x 68.5 7.1 0.00024 33.0 5.1 57 384-448 3-60 (78)
58 3nmd_A CGMP dependent protein 67.1 20 0.00068 30.3 7.5 46 331-376 21-66 (72)
59 2v4h_A NF-kappa-B essential mo 66.9 71 0.0024 28.9 11.5 10 62-71 26-35 (110)
60 3tnu_A Keratin, type I cytoske 66.1 73 0.0025 28.7 11.7 29 396-424 78-107 (131)
61 1fxk_A Prefoldin; archaeal pro 65.9 60 0.0021 27.4 12.1 32 426-457 68-99 (107)
62 3trt_A Vimentin; cytoskeleton, 64.2 57 0.002 26.5 10.0 42 436-477 34-75 (77)
63 3swk_A Vimentin; cytoskeleton, 64.1 68 0.0023 27.3 10.8 42 332-380 3-44 (86)
64 2yy0_A C-MYC-binding protein; 63.3 10 0.00035 30.0 4.8 33 126-158 19-51 (53)
65 1m1j_B Fibrinogen beta chain; 63.1 1.8E+02 0.0061 31.9 18.0 27 393-419 126-153 (464)
66 2e7s_A RAB guanine nucleotide 61.6 21 0.00073 33.3 7.3 96 58-153 23-130 (135)
67 1fxk_C Protein (prefoldin); ar 56.4 1.1E+02 0.0036 27.1 13.6 43 379-421 86-129 (133)
68 2v66_B Nuclear distribution pr 55.7 1.2E+02 0.004 27.4 15.9 40 380-419 41-81 (111)
69 3etw_A Adhesin A; antiparallel 55.1 1E+02 0.0034 28.2 10.4 93 319-415 17-109 (119)
70 1ic2_A Tropomyosin alpha chain 54.0 95 0.0032 25.8 11.1 31 377-407 37-67 (81)
71 3nmd_A CGMP dependent protein 53.8 31 0.0011 29.1 6.4 41 427-467 23-63 (72)
72 4h22_A Leucine-rich repeat fli 53.7 76 0.0026 28.5 9.2 42 384-425 19-61 (103)
73 2zqm_A Prefoldin beta subunit 52.7 1.1E+02 0.0037 26.1 13.5 23 386-408 25-47 (117)
74 1m1j_A Fibrinogen alpha subuni 51.9 2.8E+02 0.0096 30.7 15.9 42 426-467 114-155 (491)
75 3u59_A Tropomyosin beta chain; 51.2 1.2E+02 0.0041 26.1 14.5 24 379-402 42-65 (101)
76 3i00_A HIP-I, huntingtin-inter 51.1 1.1E+02 0.0038 27.7 10.1 51 325-378 18-68 (120)
77 3mov_A Lamin-B1; LMNB1, B-type 50.9 63 0.0022 28.1 8.2 12 456-467 77-88 (95)
78 1ci6_A Transcription factor AT 50.6 25 0.00086 28.3 5.2 30 379-408 28-57 (63)
79 1m1j_C Fibrinogen gamma chain; 50.5 2.4E+02 0.0081 30.4 14.2 48 424-471 85-132 (409)
80 3m91_A Proteasome-associated A 50.2 56 0.0019 25.8 7.0 37 339-375 12-48 (51)
81 2v66_B Nuclear distribution pr 50.1 1.5E+02 0.005 26.8 15.6 42 435-476 61-102 (111)
82 2e7s_A RAB guanine nucleotide 49.9 1.2E+02 0.0041 28.3 10.3 14 395-408 67-80 (135)
83 3jsv_C NF-kappa-B essential mo 49.9 65 0.0022 28.5 8.0 87 4-95 3-89 (94)
84 2w83_C C-JUN-amino-terminal ki 48.5 1.3E+02 0.0044 25.8 10.3 69 332-417 5-74 (77)
85 1gqe_A Release factor 2, RF2; 48.4 2.1E+02 0.0071 30.5 13.2 58 88-149 58-117 (365)
86 3u1c_A Tropomyosin alpha-1 cha 47.8 1.4E+02 0.0047 25.9 14.4 30 379-408 28-57 (101)
87 1gk4_A Vimentin; intermediate 46.6 1.3E+02 0.0044 25.2 11.9 12 456-467 66-77 (84)
88 4dnd_A Syntaxin-10, SYN10; str 46.4 1.5E+02 0.0051 27.0 10.3 64 385-453 64-128 (130)
89 2w83_C C-JUN-amino-terminal ki 45.1 1.2E+02 0.0042 25.9 8.7 66 84-149 5-74 (77)
90 1x8y_A Lamin A/C; structural p 44.3 1.5E+02 0.005 25.1 9.3 13 456-468 68-80 (86)
91 1deq_A Fibrinogen (alpha chain 44.2 3.4E+02 0.011 29.3 14.4 13 363-375 66-78 (390)
92 2jee_A YIIU; FTSZ, septum, coi 44.1 1.5E+02 0.0053 25.4 10.2 25 330-354 21-45 (81)
93 2yy0_A C-MYC-binding protein; 43.4 34 0.0012 27.0 4.8 25 337-361 20-44 (53)
94 3jsv_C NF-kappa-B essential mo 43.3 1.7E+02 0.0058 25.8 9.6 16 142-157 70-85 (94)
95 1d7m_A Cortexillin I; coiled-c 43.1 1.8E+02 0.006 25.8 13.8 59 355-416 37-96 (101)
96 1go4_E MAD1 (mitotic arrest de 42.7 1.4E+02 0.0049 26.5 9.2 15 174-188 77-91 (100)
97 3cvf_A Homer-3, homer protein 42.4 1.4E+02 0.0046 25.6 8.7 23 386-408 11-33 (79)
98 3s4r_A Vimentin; alpha-helix, 42.4 1.7E+02 0.0057 25.3 13.2 26 383-408 11-36 (93)
99 2pnv_A Small conductance calci 39.7 64 0.0022 24.7 5.6 30 379-408 7-36 (43)
100 2wt7_A Proto-oncogene protein 39.4 57 0.002 26.1 5.7 33 376-408 25-57 (63)
101 3iv1_A Tumor susceptibility ge 39.2 1.8E+02 0.0062 24.8 11.5 63 75-147 12-74 (78)
102 1t2k_D Cyclic-AMP-dependent tr 39.2 1E+02 0.0036 24.2 7.1 23 385-407 33-55 (61)
103 4emc_A Monopolin complex subun 39.2 1.1E+02 0.0038 30.0 8.7 10 530-539 168-177 (190)
104 2lw1_A ABC transporter ATP-bin 38.3 1.6E+02 0.0056 24.7 8.7 29 324-352 17-45 (89)
105 3htk_A Structural maintenance 38.2 1.4E+02 0.0047 23.1 9.3 49 427-475 9-57 (60)
106 2pms_C Pneumococcal surface pr 37.8 1.1E+02 0.0037 28.3 7.9 29 382-410 62-90 (125)
107 4fm3_A Uncharacterized hypothe 37.8 1.9E+02 0.0066 25.5 9.2 64 89-157 30-95 (98)
108 4h22_A Leucine-rich repeat fli 36.7 1.2E+02 0.0042 27.2 7.8 8 309-316 21-28 (103)
109 2zdi_C Prefoldin subunit alpha 36.7 1.6E+02 0.0054 26.8 8.9 43 379-421 96-139 (151)
110 1zbt_A RF-1, peptide chain rel 36.4 41 0.0014 35.9 5.6 61 88-152 50-113 (371)
111 1t2k_D Cyclic-AMP-dependent tr 36.1 1E+02 0.0035 24.3 6.6 37 330-373 23-59 (61)
112 1ci6_A Transcription factor AT 35.7 1.2E+02 0.004 24.4 7.0 36 330-372 24-59 (63)
113 2wt7_A Proto-oncogene protein 33.6 1.6E+02 0.0055 23.4 7.4 28 346-373 33-60 (63)
114 1go4_E MAD1 (mitotic arrest de 33.0 1.4E+02 0.0047 26.6 7.5 27 119-145 68-94 (100)
115 1m1j_A Fibrinogen alpha subuni 32.4 5E+02 0.017 28.7 13.1 62 400-465 98-160 (491)
116 2oto_A M protein; helical coil 32.1 3E+02 0.01 25.2 21.5 12 330-341 30-41 (155)
117 3cve_A Homer protein homolog 1 31.5 2.3E+02 0.008 23.8 10.3 23 386-408 5-27 (72)
118 2oto_A M protein; helical coil 30.9 3.1E+02 0.011 25.0 21.1 21 384-404 60-80 (155)
119 3iv1_A Tumor susceptibility ge 30.7 2.5E+02 0.0086 23.9 10.4 20 336-355 18-37 (78)
120 4dk0_A Putative MACA; alpha-ha 30.5 1.1E+02 0.0039 30.5 7.5 15 440-454 139-153 (369)
121 1jnm_A Proto-oncogene C-JUN; B 30.3 63 0.0022 25.6 4.5 32 377-408 25-56 (62)
122 2i1j_A Moesin; FERM, coiled-co 30.3 42 0.0014 37.2 4.7 89 63-151 338-430 (575)
123 1fmh_A General control protein 30.1 67 0.0023 23.0 4.0 25 115-139 2-26 (33)
124 3swy_A Cyclic nucleotide-gated 30.1 54 0.0018 25.5 3.9 25 342-366 22-46 (46)
125 3swf_A CGMP-gated cation chann 30.0 88 0.003 26.6 5.5 30 342-371 24-53 (74)
126 2b9c_A Striated-muscle alpha t 29.9 3.4E+02 0.012 25.2 15.1 47 106-152 74-120 (147)
127 2pnv_A Small conductance calci 29.5 84 0.0029 24.1 4.8 31 345-375 11-41 (43)
128 1wlq_A Geminin; coiled-coil; 2 29.5 1.7E+02 0.0057 25.4 7.2 51 337-387 32-82 (83)
129 1jnm_A Proto-oncogene C-JUN; B 29.4 76 0.0026 25.2 4.8 22 352-373 38-59 (62)
130 2wvr_A Geminin; DNA replicatio 29.2 2.3E+02 0.008 28.1 9.1 42 77-118 118-159 (209)
131 3a7p_A Autophagy protein 16; c 28.9 3.8E+02 0.013 25.4 12.6 43 382-424 69-112 (152)
132 2pms_C Pneumococcal surface pr 27.7 2.5E+02 0.0084 25.9 8.5 40 334-377 49-88 (125)
133 2b9c_A Striated-muscle alpha t 27.3 3.8E+02 0.013 24.9 14.7 30 379-408 36-65 (147)
134 3fpp_A Macrolide-specific effl 27.2 1.6E+02 0.0056 29.0 7.9 15 440-454 138-152 (341)
135 2wq1_A General control protein 27.0 98 0.0033 22.7 4.5 24 379-402 5-28 (33)
136 1hjb_A Ccaat/enhancer binding 26.4 1.4E+02 0.0047 25.8 6.2 20 354-373 54-73 (87)
137 3cl3_D NF-kappa-B essential mo 26.4 1.8E+02 0.0063 27.0 7.3 115 124-376 14-128 (130)
138 3m91_A Proteasome-associated A 26.0 2.4E+02 0.0083 22.2 7.0 40 438-477 10-49 (51)
139 2wuj_A Septum site-determining 25.9 63 0.0022 25.5 3.7 15 386-400 39-53 (57)
140 1uii_A Geminin; human, DNA rep 25.8 1.4E+02 0.0048 25.8 6.1 37 121-157 31-70 (83)
141 3ghg_C Fibrinogen gamma chain; 25.6 6.6E+02 0.023 27.1 14.4 49 426-474 87-135 (411)
142 1gd2_E Transcription factor PA 25.4 1.8E+02 0.006 24.2 6.5 44 433-476 25-68 (70)
143 4etp_A Kinesin-like protein KA 25.4 2E+02 0.007 30.4 8.7 18 353-370 20-37 (403)
144 1ik9_A DNA repair protein XRCC 25.2 4.9E+02 0.017 25.4 11.7 37 5-41 134-170 (213)
145 1f5n_A Interferon-induced guan 25.1 7.5E+02 0.026 27.6 13.6 15 175-189 382-396 (592)
146 3u06_A Protein claret segregat 24.7 1.4E+02 0.0049 31.8 7.4 69 129-216 6-74 (412)
147 3qne_A Seryl-tRNA synthetase, 24.1 3E+02 0.01 30.2 9.9 19 580-598 311-329 (485)
148 3tq7_B Microtubule-associated 24.0 88 0.003 26.9 4.5 21 1-21 6-26 (82)
149 2wvr_A Geminin; DNA replicatio 23.7 3E+02 0.01 27.4 8.8 55 337-391 109-163 (209)
150 2dgc_A Protein (GCN4); basic d 23.5 1.3E+02 0.0046 24.2 5.3 10 362-371 49-58 (63)
151 2zdi_C Prefoldin subunit alpha 23.1 2E+02 0.007 26.0 7.2 90 380-472 22-140 (151)
152 3vmx_A Voltage-gated hydrogen 23.0 2.7E+02 0.0094 21.9 6.7 31 378-408 1-31 (48)
153 3m48_A General control protein 22.8 1.1E+02 0.0038 22.4 4.1 24 379-402 5-28 (33)
154 1zxa_A CGMP-dependent protein 22.8 1.1E+02 0.0037 25.5 4.7 44 425-468 13-56 (67)
155 1t6f_A Geminin; coiled-coil, c 22.5 1.5E+02 0.005 22.2 4.8 27 329-355 7-33 (37)
156 1hjb_A Ccaat/enhancer binding 22.1 1.4E+02 0.0049 25.7 5.5 34 125-158 42-75 (87)
157 1kd8_B GABH BLL, GCN4 acid bas 21.7 1.6E+02 0.0055 22.0 4.8 28 379-406 6-33 (36)
158 2z5i_I TM, tropomyosin alpha-1 21.6 1.1E+02 0.0036 23.2 4.0 29 111-139 9-37 (40)
159 4hpq_C ATG17, KLTH0D15642P; au 21.6 7.7E+02 0.026 26.5 32.6 40 379-418 233-273 (413)
160 1fxk_C Protein (prefoldin); ar 21.3 4.1E+02 0.014 23.2 12.7 90 379-470 13-128 (133)
161 2c5k_T Syntaxin TLG1, T-snare 21.3 1.1E+02 0.0037 26.6 4.6 55 388-453 36-91 (95)
162 1uix_A RHO-associated kinase; 21.2 3.7E+02 0.013 22.6 9.4 59 334-392 2-63 (71)
163 1f5n_A Interferon-induced guan 21.0 8.9E+02 0.03 27.0 18.0 100 372-477 477-579 (592)
164 3efg_A Protein SLYX homolog; x 20.9 2.9E+02 0.0099 23.2 7.0 12 444-455 21-32 (78)
165 4e61_A Protein BIM1; EB1-like 20.9 2.3E+02 0.008 25.4 6.8 15 55-69 44-58 (106)
166 2dgc_A Protein (GCN4); basic d 20.6 1.2E+02 0.0042 24.4 4.5 31 329-359 30-60 (63)
167 3cve_A Homer protein homolog 1 20.6 3.8E+02 0.013 22.5 8.8 27 380-406 6-32 (72)
168 2zxx_A Geminin; coiled-coil, c 20.5 3.9E+02 0.013 22.8 7.7 56 63-118 23-78 (79)
169 3ni0_A Bone marrow stromal ant 20.2 4.6E+02 0.016 23.3 11.0 27 79-105 65-91 (99)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.37 E-value=7.2e-07 Score=105.22 Aligned_cols=33 Identities=24% Similarity=0.181 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q psy15551 124 AEERAETLQVELDLAKEKIEELTLDIELMKADI 156 (640)
Q Consensus 124 aee~~e~l~~el~~~k~k~eel~le~e~lk~e~ 156 (640)
++++.+.++.++..+..++++++.+++.+++++
T Consensus 911 ~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l 943 (1184)
T 1i84_S 911 AEEMRVRLAAKKQELEEILHEMEARIEEEEERS 943 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555554443
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.36 E-value=0.0017 Score=60.23 Aligned_cols=35 Identities=9% Similarity=0.066 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 437 SATREVIREKEAALESLADRELTIVKFRELVIREK 471 (640)
Q Consensus 437 sqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQ 471 (640)
..+..+...+......+..+...+.+++..+..+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (284)
T 1c1g_A 244 RSVTKLEKSIDDLEDELYAQKLKYKAISEELDHAL 278 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333344433333333
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.33 E-value=0.002 Score=59.76 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhhh
Q psy15551 7 DLKEKLDTMKIKYRE 21 (640)
Q Consensus 7 ~l~~kl~~~~~k~~e 21 (640)
.++.|+..|+.....
T Consensus 3 ~~~~~~~~l~~~~~~ 17 (284)
T 1c1g_A 3 AIKKKMQMLKLDKEN 17 (284)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHH
Confidence 455555555544433
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.87 E-value=0.023 Score=67.29 Aligned_cols=74 Identities=20% Similarity=0.342 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 332 SKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 332 ~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
..|+..+++...++.+|......++ ...+..|..|+.+++..-..+..++.+..+..+|+++++++++.+..+.
T Consensus 931 ~eLq~rL~~~e~~n~~L~~~~~~~~---~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ 1004 (1080)
T 2dfs_A 931 MQLQRKIDEQNKEYKSLLEKMNNLE---ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004 (1080)
T ss_dssp --------------------CHHHH---HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443322221 2344556666666655555566666666666666666666666665544
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.73 E-value=0.15 Score=50.77 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15551 328 KHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAA 376 (640)
Q Consensus 328 k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a 376 (640)
..++..+...+.....+...+.....++...+....+.+...+.+++.+
T Consensus 38 e~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v 86 (256)
T 3na7_A 38 LNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI 86 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3445555566666666666666666666666666666666666666543
No 6
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.63 E-value=0.11 Score=47.24 Aligned_cols=93 Identities=23% Similarity=0.323 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 327 EKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVD----AALGAEEMVQQLSVQKLELEDLVSKQAE 402 (640)
Q Consensus 327 ~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d----~a~gAEEMVEELTEKNleLEEKIeELEe 402 (640)
.-.+|.++..++..++.......+....|..+...+.....+|..||. .+..++++.+.|..+...|+.+|.++.+
T Consensus 11 ~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~ 90 (129)
T 2fxo_A 11 REKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNK 90 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777778888888888888888884 4566789999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15551 403 EIVDLEALQVVSDQLQEDAK 422 (640)
Q Consensus 403 tIeDLEaLkELnDELEEnhv 422 (640)
.+++.+ +.+++|.....
T Consensus 91 rleeee---e~~~~L~~~kk 107 (129)
T 2fxo_A 91 RLEDEE---EMNAELTAKKR 107 (129)
T ss_dssp HHHHHH---HHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHH
Confidence 888866 22444444433
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.51 E-value=0.19 Score=49.88 Aligned_cols=124 Identities=14% Similarity=0.153 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy15551 345 NAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKE 423 (640)
Q Consensus 345 ~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE 423 (640)
+..+......+..++..++..++.++.++.++- ..++.+..+...++..|.+....+...+ .+.... ++.+
T Consensus 20 i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~---~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-----~~kE 91 (256)
T 3na7_A 20 IDSLEPLIREKRKDLDKALNDKEAKNKAILNLE---EEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-----SERE 91 (256)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-----SSSH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----CHHH
Confidence 333333333344455555555555555544332 2244444444444555555554444444 232211 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 424 IEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALES 477 (640)
Q Consensus 424 ~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL 477 (640)
+ ..|..||++....+..+..++....+.++..+..+......+..++..+.+.
T Consensus 92 ~-~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~ 144 (256)
T 3na7_A 92 L-RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALEL 144 (256)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 5666777777777777777777777777777777776666666666666554
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.71 E-value=4.2 Score=53.58 Aligned_cols=74 Identities=9% Similarity=0.193 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 332 SKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 332 ~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
.+++..+.++...++.|+..++....+...++.+++..+..++.| +..|..|+.++..=.+.+..++..+.-|-
T Consensus 2031 ~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA---~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~ 2104 (3245)
T 3vkg_A 2031 DEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRS---IALLDNLNSERGRWEQQSENFNTQMSTVV 2104 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhccccHHHHHHHHHHHHHhcc
Confidence 333444444444455555555555555555555566666666654 55688888888888888888887776654
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.47 E-value=0.41 Score=56.82 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 378 GAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALE 451 (640)
Q Consensus 378 gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eE 451 (640)
.++..|..|++++..+++++..+..+.+.++ .+.++.++|+ +.-..|.+|...++.++.++...+....+
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~----~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE----QLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666665555555 4444444333 22344455555555555555544444444
No 10
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=95.40 E-value=0.16 Score=43.67 Aligned_cols=77 Identities=19% Similarity=0.269 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 326 HEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIV 405 (640)
Q Consensus 326 ~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIe 405 (640)
..-.+|..+..++...+...+...+....|..+...+.....+|..| ...++++.+.|..++.+|+.+|.++++.++
T Consensus 11 ~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q---l~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 11 RQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS---MKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456777788888877777777778888888889999999999999 677899999999999999999999988765
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.28 E-value=0.84 Score=49.02 Aligned_cols=46 Identities=11% Similarity=0.027 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 429 KEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAA 474 (640)
Q Consensus 429 REELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedL 474 (640)
+++++..+.++.++.++++..+..+..+.+.+...+..+..+.+.+
T Consensus 536 ~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 536 QKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444555555555555555555555555555544444443
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.24 E-value=6.9 Score=51.67 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----cHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 353 EKLKQRVTELEADCADLHEQVDAAL----GAE---EMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIE 425 (640)
Q Consensus 353 ~~l~~kL~~~e~~~~~l~~q~d~a~----gAE---EMVEELTEKNleLEEKIeELEetIeDLEaLkELnDELEEnhvE~E 425 (640)
++.+.++...++.|+..+..+++-| -++ ..+.++..+....++++.+.++.+. ++.+.+...+.+++
T Consensus 1979 ~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~------~le~~l~~L~~~~~ 2052 (3245)
T 3vkg_A 1979 RELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATIT------ALEKSIATYKEEYA 2052 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 3344444555555555555554433 222 2333333333333333444444444 44444444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 426 IELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALES 477 (640)
Q Consensus 426 KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL 477 (640)
.. ..|.+.+...+...+.++..+..=+..+...-.+|.+.+..++.++..+
T Consensus 2053 ~~-~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2053 TL-IRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence 22 2233444445555556666666666666666667777777776666544
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.68 E-value=0.51 Score=50.70 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 344 ENAELIKSQEKLKQRVTELEADCADLHEQVD 374 (640)
Q Consensus 344 ~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d 374 (640)
++.++.....+++.++...++.+..+++.++
T Consensus 457 e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~ 487 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQIQQEQLLQGLHAEID 487 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444555555555555554444
No 14
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=93.31 E-value=1.9 Score=39.07 Aligned_cols=77 Identities=27% Similarity=0.412 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 329 HEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 329 ~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
.++..|+..+.......++.....+.|..+-.+++..|.++.+.++. .++....|+...-.++..+.+|+..|++++
T Consensus 48 ~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rlee---eee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 48 QEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLED---EEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555666666777777777778888888777775 567777888888888888888888888876
No 15
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=92.89 E-value=0.021 Score=53.84 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHHhhhhcCCCCCCCcCCccccchhhHHhhhhHHHhc
Q psy15551 582 TENIEKCVTYFNTFYPVLFPGHPSFSSCGSLLMDYVKILSTACDCLQT 629 (640)
Q Consensus 582 ~E~FEKI~~YFn~IFsvLFgGG~A~~~~~L~LtD~~dvL~SGIEIiA~ 629 (640)
..+|..++..|+.+|+.+|+||.+ .+.+.+|.+.+..|+++.+.
T Consensus 10 ~~~f~~i~~~f~~~f~~L~~~g~~----~l~l~~~~~~~~~gl~i~~~ 53 (173)
T 3kta_B 10 MRTFEAISRNFSEIFAKLSPGGSA----RLILENPEDPFSGGLEIEAK 53 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCEE----EEEESCSSSGGGSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEE----EEEeeCCCCccccCceEEec
Confidence 457999999999999999999998 88899999989999988764
No 16
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=92.78 E-value=6.8 Score=37.18 Aligned_cols=75 Identities=24% Similarity=0.218 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy15551 335 QKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQV 412 (640)
Q Consensus 335 ~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkE 412 (640)
-.+.+.+-.+.+.+....+....++..+++.|.+|.+.+..+- ..+..|...-....++-..++.+|..|. .|++
T Consensus 13 ae~ad~KyeEvaR~E~dLEraEERae~aE~k~~eLEeeL~~v~---~nlKsLE~seekasqrEd~yEeqIk~L~~kLKE 88 (155)
T 2efr_A 13 LSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVT---NNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKE 88 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666666777777777777888888888888777544 3344454444444555555555555554 4443
No 17
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=91.74 E-value=10 Score=37.00 Aligned_cols=51 Identities=24% Similarity=0.126 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15551 426 IELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALE 476 (640)
Q Consensus 426 KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeE 476 (640)
..|+.-|-.+......+.+........++|++...++.-+...-|+.+|.+
T Consensus 105 ~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 105 EQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555666777777777888888888888888888887775
No 18
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=91.54 E-value=11 Score=36.85 Aligned_cols=16 Identities=0% Similarity=0.173 Sum_probs=0.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy15551 459 TIVKFRELVIREKEAA 474 (640)
Q Consensus 459 TIsKFRELV~~LQedL 474 (640)
++.++|+.+..|..++
T Consensus 162 ~~QRLkdE~rDLk~El 177 (189)
T 2v71_A 162 SVQRLKDEARDLRQEL 177 (189)
T ss_dssp CC--------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 19
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=90.37 E-value=2.8 Score=38.42 Aligned_cols=72 Identities=22% Similarity=0.362 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhh
Q psy15551 86 LKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAE--ERAETLQVELDLAKEKIEELTLDIELMKADIEK 158 (640)
Q Consensus 86 ~~~el~~~k~~~~e~~~~~e~~~d~~~~lem~tldkemae--e~~e~l~~el~~~k~k~eel~le~e~lk~e~e~ 158 (640)
|+++|.....-+.++...--.-..-+.+| |++|++|-|. .+.+.|+.|+..++.++.+...++|-||.+++.
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL-~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~ 103 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMAL-MASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQV 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 56666666666655543222111112222 4455666555 778999999999999999999999999998874
No 20
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=89.29 E-value=14 Score=41.13 Aligned_cols=64 Identities=16% Similarity=0.228 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHH
Q psy15551 118 TLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRL 184 (640)
Q Consensus 118 tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rL 184 (640)
+||.-+ .+...||.-|+.+..+|..|+.||.+-..--..+|.. ...-++..-.+..+++|.+.+
T Consensus 125 kVdnQl--snIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr-~~~~~vd~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 125 KVIEKV--QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSR-ALAREVDLKDYEDQQKQLEQV 188 (562)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSC-CCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-hheeecchHHHHHHHHHHHHH
Confidence 344455 5677899999999999999999999987766666665 344456666666677776654
No 21
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=86.07 E-value=6.3 Score=34.04 Aligned_cols=39 Identities=15% Similarity=0.308 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy15551 380 EEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQ 418 (640)
Q Consensus 380 EEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELE 418 (640)
.+.+.....+...+..++..++..+..++ .+..+..++.
T Consensus 63 ~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 63 EELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666666666 4555555444
No 22
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.55 E-value=17 Score=32.65 Aligned_cols=10 Identities=20% Similarity=0.581 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q psy15551 456 RELTIVKFRE 465 (640)
Q Consensus 456 lE~TIsKFRE 465 (640)
++..|.-||.
T Consensus 115 Ld~EIatYRk 124 (129)
T 3tnu_B 115 LDVEIATYRK 124 (129)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 23
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.09 E-value=16 Score=32.94 Aligned_cols=11 Identities=36% Similarity=0.549 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q psy15551 456 RELTIVKFREL 466 (640)
Q Consensus 456 lE~TIsKFREL 466 (640)
++..|.-||.+
T Consensus 117 Ld~EIatYRkL 127 (131)
T 3tnu_A 117 LEQEIATYRRL 127 (131)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44455555544
No 24
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=84.76 E-value=29 Score=33.41 Aligned_cols=105 Identities=18% Similarity=0.149 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy15551 347 ELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIE 425 (640)
Q Consensus 347 ~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~E 425 (640)
-+.|++-.+...+..+|..+.+|++. +-.|......|+..+..|.+.+..-- .....++-+.+... --
T Consensus 31 rlkK~~tEl~k~~~~~E~~~rELq~~----------~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~-ri 99 (168)
T 3o0z_A 31 RLRKSHTEMSKSISQLESLNRELQER----------NRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQA-RI 99 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 34444444444444444444444433 33344444455555555554444333 11111111111111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 426 IELKEEVEMARSATREVIREKEAALESLADRELTIVK 462 (640)
Q Consensus 426 KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsK 462 (640)
..|..|++.....+.........+.+.+.+++...+.
T Consensus 100 ~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~ 136 (168)
T 3o0z_A 100 TSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNN 136 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555554444444555555544444433
No 25
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=84.69 E-value=15 Score=31.62 Aligned_cols=86 Identities=17% Similarity=0.236 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------hcHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 334 LQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAA------------LGAEEMVQQLSVQKLELEDLVSKQA 401 (640)
Q Consensus 334 ~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a------------~gAEEMVEELTEKNleLEEKIeELE 401 (640)
+......+.+....+......+...+.+++..+.+|..-=|++ ...++.++.|..+...++..|..|+
T Consensus 11 ~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le 90 (117)
T 2zqm_A 11 MLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALE 90 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555556665555554322222 2467777888888888888888888
Q ss_pred HHHHHHH-HHHHHHHHHHH
Q psy15551 402 EEIVDLE-ALQVVSDQLQE 419 (640)
Q Consensus 402 etIeDLE-aLkELnDELEE 419 (640)
..+..++ .+.++...|.+
T Consensus 91 ~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 91 RQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777 67666666654
No 26
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=84.08 E-value=9.4 Score=35.31 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 383 VQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 383 VEELTEKNleLEEKIeELEetIeDLE 408 (640)
++.++.++..|.+++.+|+..+..|+
T Consensus 105 ~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 105 AESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 27
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=83.86 E-value=21 Score=31.98 Aligned_cols=68 Identities=22% Similarity=0.281 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 331 MSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 331 ~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
-.+++-++.........+...++.-...-+.+|+++..|+..||++ +-...+|+.+|+.|++.|.-+.
T Consensus 36 ~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~----------~l~r~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 36 KARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNA----------SLARLDLERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555554444555666666666666544 3334555566666665555544
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=82.69 E-value=14 Score=34.26 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 381 EMVQQLSVQKLELEDLVSKQAEEIVD 406 (640)
Q Consensus 381 EMVEELTEKNleLEEKIeELEetIeD 406 (640)
..++.|.+++..|+.++..|+...++
T Consensus 110 ~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 110 KEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666666655543
No 29
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=82.40 E-value=30 Score=36.25 Aligned_cols=68 Identities=24% Similarity=0.271 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy15551 351 SQEKLKQRVTELEADCADLHEQVDAAL-GAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQ 418 (640)
Q Consensus 351 ~~~~l~~kL~~~e~~~~~l~~q~d~a~-gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELE 418 (640)
...-|+++|++++....+++-|--.+- ..=.+.+.|..+.-.-+.+|++|+.+|..++ .|++...+++
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 398 VTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555555555555543221 1112223333333333334444444444444 4444444333
No 30
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=82.06 E-value=8.9 Score=32.53 Aligned_cols=58 Identities=28% Similarity=0.296 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hh--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 354 KLKQRVTELEADCADLHEQVDA-AL--GAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQ 411 (640)
Q Consensus 354 ~l~~kL~~~e~~~~~l~~q~d~-a~--gAEEMVEELTEKNleLEEKIeELEetIeDLEaLk 411 (640)
.|-.++..+|+.++.|..++-+ .+ .--+.+..+..+...++..+..+.+.-.+|+++.
T Consensus 26 ~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~~ 86 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEALK 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445556677777778888743 22 2235677888888888888888888888887664
No 31
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=81.92 E-value=38 Score=32.63 Aligned_cols=36 Identities=6% Similarity=-0.022 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 440 REVIREKEAALESLADRELTIVKFRELVIREKEAAL 475 (640)
Q Consensus 440 rEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLe 475 (640)
.++..+|..+...+......+.+.......|++.+.
T Consensus 93 ~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~ 128 (168)
T 3o0z_A 93 GDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLN 128 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444433333333333333333333
No 32
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=81.91 E-value=41 Score=35.17 Aligned_cols=97 Identities=13% Similarity=0.142 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 362 LEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATR 440 (640)
Q Consensus 362 ~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIr 440 (640)
.+..+.++.++++.++.--.-..+.......|+.+|.+++..+.+++ +-.-- +-+-+.+...|..+.......|.
T Consensus 371 ~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 446 (471)
T 3mq9_A 371 VDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATA----NHTVMALMASLDAEKAQGQKKVE 446 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhc----chhHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777765555555677777778888888888877777 22111 11112222333333333334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15551 441 EVIREKEAALESLADRELTIVK 462 (640)
Q Consensus 441 EL~rRIeq~eEqLEDlE~TIsK 462 (640)
|+..+|..+..++++.+..|.+
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 447 ELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555544444
No 33
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=81.05 E-value=16 Score=40.84 Aligned_cols=29 Identities=10% Similarity=0.258 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 427 ELKEEVEMARSATREVIREKEAALESLAD 455 (640)
Q Consensus 427 eLREELD~kdsqIrEL~rRIeq~eEqLED 455 (640)
+|+.-|.+++..|.+...+|..++..|++
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLed 142 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRA 142 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444333333
No 34
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.05 E-value=42 Score=31.89 Aligned_cols=28 Identities=4% Similarity=-0.312 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 450 LESLADRELTIVKFRELVIREKEAALES 477 (640)
Q Consensus 450 eEqLEDlE~TIsKFRELV~~LQedLeEL 477 (640)
+.....++..+..-...+..++.++.++
T Consensus 114 e~r~~~L~~ql~e~~~~l~~lq~ql~~L 141 (154)
T 2ocy_A 114 EILNKRLTEQLREKDTLLDTLTLQLKNL 141 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444445555555443
No 35
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.94 E-value=42 Score=31.87 Aligned_cols=36 Identities=8% Similarity=0.016 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 440 REVIREKEAALESLADRELTIVKFRELVIREKEAAL 475 (640)
Q Consensus 440 rEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLe 475 (640)
..+.++...+..++.+.+.-|......+..|..-++
T Consensus 111 ~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~ 146 (154)
T 2ocy_A 111 YAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMH 146 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555554443
No 36
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.73 E-value=48 Score=34.80 Aligned_cols=30 Identities=20% Similarity=0.136 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 426 IELKEEVEMARSATREVIREKEAALESLAD 455 (640)
Q Consensus 426 KeLREELD~kdsqIrEL~rRIeq~eEqLED 455 (640)
+.++++-+.....++++..++....+.+.|
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
T 3oja_A 445 TQLAEENARLKKLNGEADLALASANATLQE 474 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhhhHhcccHHHH
Confidence 344444444444444444444444444444
No 37
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=79.08 E-value=32 Score=30.00 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy15551 434 MARSATREVIREKEAA 449 (640)
Q Consensus 434 ~kdsqIrEL~rRIeq~ 449 (640)
.....+..+.|||.-.
T Consensus 83 ~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 83 KAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344555555555544
No 38
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=78.36 E-value=28 Score=29.88 Aligned_cols=29 Identities=3% Similarity=-0.026 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 434 MARSATREVIREKEAALESLADRELTIVK 462 (640)
Q Consensus 434 ~kdsqIrEL~rRIeq~eEqLEDlE~TIsK 462 (640)
.....+.++..++..+...+..++..+..
T Consensus 68 ~~~~~l~~l~~~i~~l~~~i~~l~~~~~~ 96 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDRKSELERELRR 96 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444433333333
No 39
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=77.38 E-value=10 Score=31.75 Aligned_cols=72 Identities=21% Similarity=0.355 Sum_probs=47.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q psy15551 110 LVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLV 189 (640)
Q Consensus 110 ~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLv 189 (640)
+...|-++.+|++-|.++++.++..+..+..+...++-+|..|.--|...- -.|+.-.+||.+|..
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE--------------~eld~~ee~l~~a~~ 69 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTE--------------DELDKYSESLKDAQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
Confidence 345566677777777777777777777777777777777777665443311 245666666777777
Q ss_pred Hhhhch
Q psy15551 190 RLRDLS 195 (640)
Q Consensus 190 rlRd~s 195 (640)
+|..-+
T Consensus 70 kLeeae 75 (81)
T 1ic2_A 70 KLELAD 75 (81)
T ss_dssp HHHHHG
T ss_pred HHHHHH
Confidence 666544
No 40
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.36 E-value=41 Score=29.82 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q psy15551 354 KLKQRVTELEADCA 367 (640)
Q Consensus 354 ~l~~kL~~~e~~~~ 367 (640)
+++.++..++....
T Consensus 9 ~lre~l~~le~~~~ 22 (97)
T 2eqb_B 9 QLKEDYNTLKRELS 22 (97)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344433333
No 41
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=75.87 E-value=37 Score=30.46 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy15551 397 VSKQAEEIVDLE-ALQVVSDQLQEDAKE 423 (640)
Q Consensus 397 IeELEetIeDLE-aLkELnDELEEnhvE 423 (640)
+..+...|..+| +|..+..++.....+
T Consensus 77 l~~~q~~i~~lE~eL~~~r~e~~~ql~E 104 (129)
T 3tnu_B 77 LKDARNKLAELEEALQKAKQDMARLLRE 104 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333444444444 444444444433333
No 42
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=75.14 E-value=13 Score=39.53 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy15551 88 RELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMK 153 (640)
Q Consensus 88 ~el~~~k~~~~e~~~~~e~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk 153 (640)
+++..++.......+.+....++.+..||+. |.||.+ .++.|+..++.++++++.++..|=
T Consensus 36 ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~-D~e~~~----~a~~e~~~l~~~~~~le~~l~~lL 96 (354)
T 3d5a_X 36 RRYAEMGEVIGLIREYRKVLEDLEQAESLLD-DPELKE----MAKAEREALLARKEALEKELERHL 96 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT-CHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHH----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444444444444456667777788877 888754 466778888889999887766553
No 43
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=74.85 E-value=27 Score=29.82 Aligned_cols=68 Identities=22% Similarity=0.288 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 330 EMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDL 407 (640)
Q Consensus 330 ~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDL 407 (640)
+-.++.-++.........+...++.=-..-+.+|+++.-|+.-||+| +-...+|+-+|+.|++.|.-|
T Consensus 15 e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a----------~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 15 DKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNA----------SLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444455566666666655544 334456666666666665544
No 44
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=74.80 E-value=58 Score=30.83 Aligned_cols=98 Identities=18% Similarity=0.095 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 379 AEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADREL 458 (640)
Q Consensus 379 AEEMVEELTEKNleLEEKIeELEetIeDLEaLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~ 458 (640)
+++.++....+...|++.+...-..+..|+.-.+-..+-++.--+..+.|...+...+.......+.+..++..|.+++.
T Consensus 33 aEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd 112 (155)
T 2efr_A 33 AEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLED 112 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666666666666666644444444444444444666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy15551 459 TIVKFRELVIREKEAALE 476 (640)
Q Consensus 459 TIsKFRELV~~LQedLeE 476 (640)
.+...+.....+...|..
T Consensus 113 ~L~~~Kek~~~i~~eLd~ 130 (155)
T 2efr_A 113 ELYAQKLKYKAISEEMKQ 130 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666665553
No 45
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=74.71 E-value=75 Score=34.83 Aligned_cols=31 Identities=3% Similarity=0.023 Sum_probs=17.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 378 GAEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 378 gAEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
++...|..|+......+.++.++...|.+..
T Consensus 118 ~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~ 148 (464)
T 1m1j_B 118 TMYQYVNMIDNKLVKTQKQRKDNDIILSEYN 148 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 4445555566655555555555555554443
No 46
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=73.77 E-value=41 Score=28.70 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy15551 390 KLELEDLVSKQAEEIVDLE-ALQVVSDQL 417 (640)
Q Consensus 390 NleLEEKIeELEetIeDLE-aLkELnDEL 417 (640)
..+.+++...|...-.+|+ .++++++.+
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555 555555544
No 47
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=72.73 E-value=16 Score=33.24 Aligned_cols=66 Identities=24% Similarity=0.236 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q psy15551 80 MESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMA-------EERAETLQVELDLAKEKIEEL 145 (640)
Q Consensus 80 ~~~~~~~~~el~~~k~~~~e~~~~~e~~~d~~~~lem~tldkema-------ee~~e~l~~el~~~k~k~eel 145 (640)
....+.|+.+|..-++.++.|....+.+..-.+.++....+-+.| |.||.+.+...--+|+++.+|
T Consensus 46 ~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~~~q~~~~e~E~kAqa~Eerf~KLKe~yteL 118 (120)
T 3i00_A 46 KGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLSEIERKAQANEQRYSKLKEKYSEL 118 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444666666666666666665555544444555555555444 456666666666666666554
No 48
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=72.35 E-value=21 Score=32.30 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHH
Q psy15551 3 AEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAE 38 (640)
Q Consensus 3 ~e~~~l~~kl~~~~~k~~ek~~~~~~~~~ql~q~~~ 38 (640)
.+|.+|+.+|...+..-..|-.+.++|+..+.+..+
T Consensus 24 ~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 24 MQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999887777444
No 49
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=71.36 E-value=71 Score=31.42 Aligned_cols=64 Identities=5% Similarity=0.026 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 385 QLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEA 448 (640)
Q Consensus 385 ELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq 448 (640)
.+..+|..|.+++..++.+++++- ++.+.-..=.+.-.++-...-.=|..+...|++++.++.+
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~ 200 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLN 200 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344444444444444444444433 2222222222222233355666778888888888866643
No 50
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=70.73 E-value=51 Score=28.38 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15551 383 VQQLSVQKLELEDLVSKQAEEI 404 (640)
Q Consensus 383 VEELTEKNleLEEKIeELEetI 404 (640)
|++|.++|-.|..+..++....
T Consensus 29 ieELKekN~~L~~e~~e~~~~~ 50 (81)
T 2jee_A 29 IEELKEKNNSLSQEVQNAQHQR 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444444444444444433
No 51
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=69.92 E-value=54 Score=28.34 Aligned_cols=17 Identities=12% Similarity=0.061 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15551 433 EMARSATREVIREKEAA 449 (640)
Q Consensus 433 D~kdsqIrEL~rRIeq~ 449 (640)
......+..+.|||.-.
T Consensus 82 ~~AE~evasLnRriqll 98 (101)
T 3u59_A 82 TDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555666665543
No 52
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=69.64 E-value=68 Score=34.50 Aligned_cols=19 Identities=5% Similarity=0.235 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy15551 389 QKLELEDLVSKQAEEIVDL 407 (640)
Q Consensus 389 KNleLEEKIeELEetIeDL 407 (640)
.+.++..+|++|+..+.++
T Consensus 61 ~er~~~~rIe~L~~~L~~~ 79 (390)
T 1deq_A 61 VDQDFTSRINKLRDSLFNY 79 (390)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 53
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=69.47 E-value=51 Score=27.84 Aligned_cols=76 Identities=14% Similarity=0.198 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy15551 343 QENAELIKSQEKLKQRVTELEADCADLHEQVDAA------------LGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-A 409 (640)
Q Consensus 343 ~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a------------~gAEEMVEELTEKNleLEEKIeELEetIeDLE-a 409 (640)
++...+......+...+.+.+..+.+|..-=|++ ...++.+..|..+...++..|..|+..+..++ .
T Consensus 15 ~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~ 94 (107)
T 1fxk_A 15 QQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKK 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444445555555555554211111 24567777777777777777777777777777 6
Q ss_pred HHHHHHHHH
Q psy15551 410 LQVVSDQLQ 418 (640)
Q Consensus 410 LkELnDELE 418 (640)
+.++...|.
T Consensus 95 l~~lk~~l~ 103 (107)
T 1fxk_A 95 LQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655543
No 54
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=69.24 E-value=61 Score=28.72 Aligned_cols=80 Identities=19% Similarity=0.307 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHH
Q psy15551 326 HEKHEMSKLQKDIEEKKQENAELIKSQE-------KLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVS 398 (640)
Q Consensus 326 ~~k~~~~~~~~~~e~~~~~~~~l~~~~~-------~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIe 398 (640)
..|.+++.++.++.....+...|..... ........++..+++|--.| .--|-.||-.-.-....++.++.
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL--FeEAN~MVa~ar~e~~~~e~kn~ 86 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL--FDEANNMVADARKEKYAIEILNK 86 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444444444433332 23334444444444444333 22355778777777777888888
Q ss_pred HHHHHHHHH
Q psy15551 399 KQAEEIVDL 407 (640)
Q Consensus 399 ELEetIeDL 407 (640)
.|++++.|.
T Consensus 87 ~L~~qL~d~ 95 (97)
T 2eqb_B 87 RLTEQLREK 95 (97)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 888777764
No 55
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=68.74 E-value=65 Score=28.79 Aligned_cols=40 Identities=20% Similarity=0.388 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15551 330 EMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAA 376 (640)
Q Consensus 330 ~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a 376 (640)
+|..|.+.|+....+++.+. -++..+...++|++...+.-
T Consensus 21 ~I~~LR~qid~~~~e~a~l~-------leldn~~~~~edfk~KyE~E 60 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVE-------VERDNLAEDIMRLREKLQEE 60 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHH
Confidence 44555555555555555443 44455566666666665543
No 56
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=68.67 E-value=37 Score=30.15 Aligned_cols=60 Identities=23% Similarity=0.336 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHHHHHHHHHHHh
Q psy15551 86 LKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAE-----ERAETLQVELDLAKEKIEELT 146 (640)
Q Consensus 86 ~~~el~~~k~~~~e~~~~~e~~~d~~~~lem~tldkemae-----e~~e~l~~el~~~k~k~eel~ 146 (640)
|+++|..+..-+.++....-.-..-+.+| +++|+||-|. .+.+.|+.|+..++.++.+..
T Consensus 23 Lq~qLT~Aq~~l~~~eaQAaTCNqTV~tL-~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 23 LQRQLTRTQDSLLQAETQANSCNLTVVTL-QESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666655555443322222223333 5778888776 557777777777777776665
No 57
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=68.48 E-value=7.1 Score=33.01 Aligned_cols=57 Identities=21% Similarity=0.198 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 384 QQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEA 448 (640)
Q Consensus 384 EELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq 448 (640)
+.|+-+-.+++++|.+|+..+...+ .+.++|+.+-..+ .+|+....+++-+..++..
T Consensus 3 ~~~~~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq--------~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 3 EQLSPRDQELEARLVELETRLSFQEQALTELSEALADAR--------LTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHTC--
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 3444455566777777777777777 6666666665543 3344444444444444433
No 58
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=67.14 E-value=20 Score=30.32 Aligned_cols=46 Identities=17% Similarity=0.183 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15551 331 MSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAA 376 (640)
Q Consensus 331 ~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a 376 (640)
+..|+..+..+..++.......+.|..+|.+.++.|..|+.++|-.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666666677788899999999999998864
No 59
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=66.88 E-value=71 Score=28.94 Aligned_cols=10 Identities=40% Similarity=0.777 Sum_probs=4.5
Q ss_pred HHHHHHHHHh
Q psy15551 62 LDEMKIQLDQ 71 (640)
Q Consensus 62 l~~~~~~~~~ 71 (640)
++.++.++..
T Consensus 26 i~~L~~~L~~ 35 (110)
T 2v4h_A 26 LEDLRQQLQQ 35 (110)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 60
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=66.10 E-value=73 Score=28.66 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy15551 396 LVSKQAEEIVDLE-ALQVVSDQLQEDAKEI 424 (640)
Q Consensus 396 KIeELEetIeDLE-aLkELnDELEEnhvE~ 424 (640)
.+..++..|..+| +|..+..++.....++
T Consensus 78 ~l~~~q~~i~~lE~eL~~~r~em~~ql~EY 107 (131)
T 3tnu_A 78 QLAQIQEMIGSVEEQLAQLRCEMEQQNQEY 107 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444 4444444444433333
No 61
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=65.92 E-value=60 Score=27.38 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 426 IELKEEVEMARSATREVIREKEAALESLADRE 457 (640)
Q Consensus 426 KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE 457 (640)
..|...+++.+..|..+..++......+.+++
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555444444444444444444333
No 62
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=64.24 E-value=57 Score=26.52 Aligned_cols=42 Identities=10% Similarity=0.058 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 436 RSATREVIREKEAALESLADRELTIVKFRELVIREKEAALES 477 (640)
Q Consensus 436 dsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL 477 (640)
..++.++..........+......|..+|-.++.|+.+|+.+
T Consensus 34 ~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 34 KSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677777778888888888888888888888888888754
No 63
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=64.13 E-value=68 Score=27.33 Aligned_cols=42 Identities=14% Similarity=0.327 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHH
Q psy15551 332 SKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAE 380 (640)
Q Consensus 332 ~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAE 380 (640)
..|...++....+++. +.-++..+...++|++...+.-++..
T Consensus 3 ~eLr~qi~~l~~e~~~-------l~~e~dn~~~~~edfk~KyE~E~~~R 44 (86)
T 3swk_A 3 RELRRQVDQLTNDKAR-------VEVERDNLAEDIMRLREKLQEEMLQR 44 (86)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544444 44455566677777777766555443
No 64
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=63.32 E-value=10 Score=29.99 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhh
Q psy15551 126 ERAETLQVELDLAKEKIEELTLDIELMKADIEK 158 (640)
Q Consensus 126 e~~e~l~~el~~~k~k~eel~le~e~lk~e~e~ 158 (640)
.-+|.|+.|++.++.|+++|+.+++-+++.++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346889999999999999999999999887764
No 65
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=63.14 E-value=1.8e+02 Score=31.90 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy15551 393 LEDLVSKQAEEIVDLE-ALQVVSDQLQE 419 (640)
Q Consensus 393 LEEKIeELEetIeDLE-aLkELnDELEE 419 (640)
+...+...+.++.+.+ .+++.+.+|+.
T Consensus 126 Iq~slk~~Q~Qi~en~n~~~~~~~~~e~ 153 (464)
T 1m1j_B 126 IDNKLVKTQKQRKDNDIILSEYNTEMEL 153 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHH
Confidence 4444444444444444 34444444443
No 66
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.59 E-value=21 Score=33.29 Aligned_cols=96 Identities=16% Similarity=0.204 Sum_probs=40.1
Q ss_pred HHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH--------HHHHHHhhhhHHHHH
Q psy15551 58 KTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE----DTADL--------VETLEMMTLDKEMAE 125 (640)
Q Consensus 58 k~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e----~~~d~--------~~~lem~tldkemae 125 (640)
++..|+.++.+++++..=...+......|+.++.+-+....+|...+. ++.+| ..++=.+-.....++
T Consensus 23 ~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e 102 (135)
T 2e7s_A 23 AIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIE 102 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666553322222222233333333333333333333332 22222 233333455666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy15551 126 ERAETLQVELDLAKEKIEELTLDIELMK 153 (640)
Q Consensus 126 e~~e~l~~el~~~k~k~eel~le~e~lk 153 (640)
.|.+.|+..+......++.++..+.-||
T Consensus 103 ~r~~~L~~ql~e~e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 103 ILNKRLTEQLREKDMLLDTLTLQLKNLK 130 (135)
T ss_dssp HHHHHHHHTTTHHHHCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766666666666655555554
No 67
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=56.39 E-value=1.1e+02 Score=27.09 Aligned_cols=43 Identities=26% Similarity=0.301 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy15551 379 AEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDA 421 (640)
Q Consensus 379 AEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnh 421 (640)
.++-++-|..+...++..+..++..+..+. .+..+.+.+++..
T Consensus 86 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 86 FEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478888888888888888888888888888 7777777776654
No 68
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=55.73 E-value=1.2e+02 Score=27.42 Aligned_cols=40 Identities=25% Similarity=0.240 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy15551 380 EEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQE 419 (640)
Q Consensus 380 EEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEE 419 (640)
+..|..|...+..|...|.+|+-.=+||| +-+....-|+.
T Consensus 41 q~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD 81 (111)
T 2v66_B 41 EDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLED 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHH
Confidence 34455566666666666666666666666 54444444443
No 69
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=55.07 E-value=1e+02 Score=28.22 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=59.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHH
Q psy15551 319 RLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVS 398 (640)
Q Consensus 319 ~l~d~~~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIe 398 (640)
++-.|.+.+.....+.....+.-.+.+++....+.++..++..+++ .....+----....+.+.+.-.-+|+.+|.
T Consensus 17 e~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~----~~~~~~yk~~y~~l~k~Y~~~~keLd~~ik 92 (119)
T 3etw_A 17 EYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQA----EANTRFYKSQYQELASKYEDALKKLEAEME 92 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666667666666676666777666655555444444433 222222122344678888888889999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15551 399 KQAEEIVDLEALQVVSD 415 (640)
Q Consensus 399 ELEetIeDLEaLkELnD 415 (640)
..+..|+..|.++-+.+
T Consensus 93 ~qekiIdnFE~ik~lr~ 109 (119)
T 3etw_A 93 QQKAVISDFEKIQALRA 109 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999998886665543
No 70
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=54.05 E-value=95 Score=25.81 Aligned_cols=31 Identities=23% Similarity=0.180 Sum_probs=16.6
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 377 LGAEEMVQQLSVQKLELEDLVSKQAEEIVDL 407 (640)
Q Consensus 377 ~gAEEMVEELTEKNleLEEKIeELEetIeDL 407 (640)
..++..|..|+.++..+++.+...++.+.+.
T Consensus 37 ~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 37 KQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666555555555555554443
No 71
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=53.85 E-value=31 Score=29.14 Aligned_cols=41 Identities=10% Similarity=0.041 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 427 ELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELV 467 (640)
Q Consensus 427 eLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV 467 (640)
+|+..+..++.+|+....+|..++..+...+..|..++..+
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444333
No 72
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=53.65 E-value=76 Score=28.46 Aligned_cols=42 Identities=29% Similarity=0.337 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy15551 384 QQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIE 425 (640)
Q Consensus 384 EELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~E 425 (640)
.+|-...-+|--+|..|+..+++++ .+-+++.++.+...+.+
T Consensus 19 AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e 61 (103)
T 4h22_A 19 AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFE 61 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677777777777766 66666666665555443
No 73
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=52.70 E-value=1.1e+02 Score=26.11 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 386 LSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 386 LTEKNleLEEKIeELEetIeDLE 408 (640)
+..+...++..+.+++.++++|+
T Consensus 25 l~~q~~~l~~~~~e~~~~~~eL~ 47 (117)
T 2zqm_A 25 VVQQKQKVQLELTEAKKALDEIE 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444
No 74
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=51.92 E-value=2.8e+02 Score=30.65 Aligned_cols=42 Identities=10% Similarity=0.203 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 426 IELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELV 467 (640)
Q Consensus 426 KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV 467 (640)
.+|+.-|.+++..|.+...+|..++..|.+.-..|.++..-|
T Consensus 114 ~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 114 TELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555444444444333
No 75
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=51.16 E-value=1.2e+02 Score=26.15 Aligned_cols=24 Identities=38% Similarity=0.241 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 379 AEEMVQQLSVQKLELEDLVSKQAE 402 (640)
Q Consensus 379 AEEMVEELTEKNleLEEKIeELEe 402 (640)
+++.|..|+.++..++..+...+.
T Consensus 42 ~E~ei~sL~kKiq~lE~eld~~~e 65 (101)
T 3u59_A 42 LEEEQQGLQKKLKGTEDEVEKYSE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 76
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=51.06 E-value=1.1e+02 Score=27.71 Aligned_cols=51 Identities=31% Similarity=0.353 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15551 325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALG 378 (640)
Q Consensus 325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~g 378 (640)
.+.+.++..|..+++..+.|.. .....|+.++..++++.+.-+.+++.|++
T Consensus 18 e~Lkreie~lk~ele~l~~E~q---~~v~ql~~~i~~Le~eL~e~r~~~q~a~~ 68 (120)
T 3i00_A 18 ERLYREISGLKAQLENMKTESQ---RVVLQLKGHVSELEADLAEQQHLRQQAAD 68 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777776654443 33344666677777766666655554443
No 77
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=50.95 E-value=63 Score=28.13 Aligned_cols=12 Identities=25% Similarity=0.628 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHH
Q psy15551 456 RELTIVKFRELV 467 (640)
Q Consensus 456 lE~TIsKFRELV 467 (640)
++..|..||.++
T Consensus 77 Le~EIatYrkLL 88 (95)
T 3mov_A 77 LDMEISAYRKLL 88 (95)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455566666554
No 78
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=50.58 E-value=25 Score=28.31 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 379 AEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 379 AEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
++..++.|+.+|.+|..+|..|+.++..|-
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666666666654
No 79
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=50.49 E-value=2.4e+02 Score=30.37 Aligned_cols=48 Identities=6% Similarity=-0.009 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 424 IEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREK 471 (640)
Q Consensus 424 ~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQ 471 (640)
.-+.+.+++...+..+.....+|..++..+...+..|.+....|..+.
T Consensus 85 ~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 85 KSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 335667777777777777777777777666666666666655555543
No 80
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=50.24 E-value=56 Score=25.80 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 339 EEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDA 375 (640)
Q Consensus 339 e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~ 375 (640)
.++...+..|.+..++|..-|..+-.++..|+++||.
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666667777777788888888888888875
No 81
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=50.11 E-value=1.5e+02 Score=26.82 Aligned_cols=42 Identities=24% Similarity=0.122 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15551 435 ARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALE 476 (640)
Q Consensus 435 kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeE 476 (640)
+.....++.+.-......++|++...++.-+...-|+.+|.+
T Consensus 61 LEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~E 102 (111)
T 2v66_B 61 LEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444555555666777777777777777666666654
No 82
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=49.90 E-value=1.2e+02 Score=28.29 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q psy15551 395 DLVSKQAEEIVDLE 408 (640)
Q Consensus 395 EKIeELEetIeDLE 408 (640)
.....++..+++|.
T Consensus 67 ~~~~~ie~ElE~LT 80 (135)
T 2e7s_A 67 EEADKLNKEVEDLT 80 (135)
T ss_dssp HTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444444
No 83
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=49.89 E-value=65 Score=28.49 Aligned_cols=87 Identities=21% Similarity=0.316 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHHHHHHHHHHHhhhhhhhhHHHHhhHHHHHHHHHhHHHHHHHHHHHH
Q psy15551 4 EIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQ 83 (640)
Q Consensus 4 e~~~l~~kl~~~~~k~~ek~~~~~~~~~ql~q~~~~k~k~~e~~~~~~~~~d~~k~~~l~~~~~~~~~~~~~k~~~~~~~ 83 (640)
++.+|+.+|...+.-..-|-.++|+||-...|...-...|-=-+++.-+|+ .|+..-+..++.+.+=|..+.+..
T Consensus 3 ~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~-----~DF~aERadREkl~~eKe~L~~ql 77 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYK-----ADFQAERHAREKLVEKKEYLQEQL 77 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 678899999988888888888888888776666654444444444433443 233333444444444444444445
Q ss_pred HHHHHHHHHHHH
Q psy15551 84 AGLKRELEKLKQ 95 (640)
Q Consensus 84 ~~~~~el~~~k~ 95 (640)
+.+++++.+++.
T Consensus 78 ~~lq~q~~~L~~ 89 (94)
T 3jsv_C 78 EQLQREFNKLKV 89 (94)
T ss_dssp HHHHHTTC----
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
No 84
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=48.47 E-value=1.3e+02 Score=25.76 Aligned_cols=69 Identities=20% Similarity=0.298 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q psy15551 332 SKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-AL 410 (640)
Q Consensus 332 ~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aL 410 (640)
..+-++++.+-.||.+|-.+++.|.- .-.||=.+ |++||-++..|..++..+......++ .+
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnv-------vk~DLI~r----------vdELt~E~e~l~~El~s~~~~~~r~~~ri 67 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNI-------VKNDLIAK----------VDELTCEKDVLQGELEAVKQAKLKLEEKN 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH----------HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888888887776522 22233333 55678888888888888888777777 67
Q ss_pred HHHHHHH
Q psy15551 411 QVVSDQL 417 (640)
Q Consensus 411 kELnDEL 417 (640)
+++.++|
T Consensus 68 ~elEeEl 74 (77)
T 2w83_C 68 RELEEEL 74 (77)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 6666655
No 85
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=48.41 E-value=2.1e+02 Score=30.52 Aligned_cols=58 Identities=24% Similarity=0.270 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy15551 88 RELEKLKQEKQEAVEAKEDTADLVETLEMMT--LDKEMAEERAETLQVELDLAKEKIEELTLDI 149 (640)
Q Consensus 88 ~el~~~k~~~~e~~~~~e~~~d~~~~lem~t--ldkemaee~~e~l~~el~~~k~k~eel~le~ 149 (640)
+++..++.........+....|+.+..||+. -|.||. +.++.|+..++.+++.++..+
T Consensus 58 ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~e~D~e~~----~~a~~e~~~l~~~l~~le~~~ 117 (365)
T 1gqe_A 58 KERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDEETF----NEAVAELDALEEKLAQLEFRR 117 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH----HHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444445555566666653 366654 346677777888888887654
No 86
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=47.84 E-value=1.4e+02 Score=25.93 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 379 AEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 379 AEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
++..+..+..++...++.|..|+..+.-++
T Consensus 28 ~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE 57 (101)
T 3u1c_A 28 AEADKKAAEERSKQLEDDIVQLEKQLRVTE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344444444445555555554444444444
No 87
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=46.64 E-value=1.3e+02 Score=25.24 Aligned_cols=12 Identities=25% Similarity=0.672 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q psy15551 456 RELTIVKFRELV 467 (640)
Q Consensus 456 lE~TIsKFRELV 467 (640)
++..|.-||.++
T Consensus 66 Ld~EIatYRkLL 77 (84)
T 1gk4_A 66 LDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 445555555544
No 88
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=46.37 E-value=1.5e+02 Score=27.02 Aligned_cols=64 Identities=11% Similarity=0.119 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 385 QLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESL 453 (640)
Q Consensus 385 ELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqL 453 (640)
++..-.-+|..-+..++.+++||+ ++.-+...-...++. ..||..+...+.+...+|...+..+
T Consensus 64 E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~-----~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 64 ELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLP-----AGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCC-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445556666666666666666 443221111000000 3356666666666666666555443
No 89
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=45.15 E-value=1.2e+02 Score=25.88 Aligned_cols=66 Identities=24% Similarity=0.325 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy15551 84 AGLKRELEKLKQEKQEAVEAKEDT----ADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDI 149 (640)
Q Consensus 84 ~~~~~el~~~k~~~~e~~~~~e~~----~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~ 149 (640)
+|+-++++.+=.|..++.+.+..+ .||-..++-+|-++++-.+..+.++.-...+..|+-|++-++
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677888888888877777622 677888888888888888888888888888888887777654
No 90
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=44.27 E-value=1.5e+02 Score=25.13 Aligned_cols=13 Identities=23% Similarity=0.485 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q psy15551 456 RELTIVKFRELVI 468 (640)
Q Consensus 456 lE~TIsKFRELV~ 468 (640)
++..|..||.++.
T Consensus 68 Le~EIatYRkLLE 80 (86)
T 1x8y_A 68 LDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHc
Confidence 4555556665543
No 91
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=44.19 E-value=3.4e+02 Score=29.32 Aligned_cols=13 Identities=8% Similarity=0.112 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q psy15551 363 EADCADLHEQVDA 375 (640)
Q Consensus 363 e~~~~~l~~q~d~ 375 (640)
...|++|+..|+.
T Consensus 66 ~~rIe~L~~~L~~ 78 (390)
T 1deq_A 66 TSRINKLRDSLFN 78 (390)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 92
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=44.09 E-value=1.5e+02 Score=25.41 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 330 EMSKLQKDIEEKKQENAELIKSQEK 354 (640)
Q Consensus 330 ~~~~~~~~~e~~~~~~~~l~~~~~~ 354 (640)
.|+-|+-++++++.+|..|....+.
T Consensus 21 tI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555444444443333
No 93
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=43.43 E-value=34 Score=27.01 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 337 DIEEKKQENAELIKSQEKLKQRVTE 361 (640)
Q Consensus 337 ~~e~~~~~~~~l~~~~~~l~~kL~~ 361 (640)
|++.++.|+++|+..++.|+.++.+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544444444333333
No 94
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=43.25 E-value=1.7e+02 Score=25.84 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=6.7
Q ss_pred HHHHhhhHHHHHHhhh
Q psy15551 142 IEELTLDIELMKADIE 157 (640)
Q Consensus 142 ~eel~le~e~lk~e~e 157 (640)
.++|..++..|+.++.
T Consensus 70 Ke~L~~ql~~lq~q~~ 85 (94)
T 3jsv_C 70 KEYLQEQLEQLQREFN 85 (94)
T ss_dssp TSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 95
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=43.10 E-value=1.8e+02 Score=25.77 Aligned_cols=59 Identities=24% Similarity=0.320 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy15551 355 LKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQ 416 (640)
Q Consensus 355 l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDE 416 (640)
+..+-..-+..+.+|+..+|.++-- ++.=.=-.++|+.++...+..-.=|| .|.++-|+
T Consensus 37 l~~e~~~R~~~i~el~akidd~Lk~---l~~EklAkldLE~RLsKtEKDkAiLELkLaE~~De 96 (101)
T 1d7m_A 37 LESEGAEREKRLRELEAKLDETLKN---LELEKLARMELEARLAKTEKDRAILELKLAEAIDE 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Confidence 3344444555566777777777643 11222235778888888777777777 66665554
No 96
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=42.66 E-value=1.4e+02 Score=26.48 Aligned_cols=15 Identities=40% Similarity=0.430 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy15551 174 IKQLEQQNMRLRETL 188 (640)
Q Consensus 174 ~~qle~qN~rLreaL 188 (640)
+.+|...++|||+.+
T Consensus 77 ~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 77 HSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555555555543
No 97
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=42.38 E-value=1.4e+02 Score=25.59 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 386 LSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 386 LTEKNleLEEKIeELEetIeDLE 408 (640)
++.+..+++.+-.+|+.+|..++
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le 33 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAME 33 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 33344444444444444444433
No 98
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=42.35 E-value=1.7e+02 Score=25.25 Aligned_cols=26 Identities=23% Similarity=0.061 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 383 VQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 383 VEELTEKNleLEEKIeELEetIeDLE 408 (640)
+..|.++--+.=++|..|+..=..|+
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le 36 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILL 36 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555
No 99
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=39.73 E-value=64 Score=24.73 Aligned_cols=30 Identities=13% Similarity=0.225 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 379 AEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 379 AEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
..+++-+++.+..+|+++|..|+..++.|.
T Consensus 7 mydlvsel~~r~e~LE~Ri~~LE~KLd~L~ 36 (43)
T 2pnv_A 7 MYDMISDLNERSEDFEKRIVTLETKLETLI 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888887777766
No 100
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=39.43 E-value=57 Score=26.06 Aligned_cols=33 Identities=21% Similarity=0.161 Sum_probs=23.5
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 376 ALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 376 a~gAEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
...++..++.|+..|..|..+|..|...+..|.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566777788888888888877777766
No 101
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=39.25 E-value=1.8e+02 Score=24.82 Aligned_cols=63 Identities=22% Similarity=0.399 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 75 FKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTL 147 (640)
Q Consensus 75 ~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~l 147 (640)
++.++.+.....|.||+.+++--.|+..-+..+.++...|+ .|. ..++..++.++.|.+||+-
T Consensus 12 LRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~-----~E~-----~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 12 LRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLD-----QEV-----AEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHH-----HHH-----HHHHHHHHHHHHHHHHHHH
Confidence 57778888888889999999999888888887777665543 222 2356677778888887764
No 102
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=39.24 E-value=1e+02 Score=24.22 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 385 QLSVQKLELEDLVSKQAEEIVDL 407 (640)
Q Consensus 385 ELTEKNleLEEKIeELEetIeDL 407 (640)
.|+..|..|..+|..|+.++..|
T Consensus 33 ~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 33 DLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333
No 103
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=39.23 E-value=1.1e+02 Score=29.99 Aligned_cols=10 Identities=10% Similarity=0.315 Sum_probs=6.5
Q ss_pred HHHHHHHhhh
Q psy15551 530 LMDYVKILST 539 (640)
Q Consensus 530 ~lLlf~RLa~ 539 (640)
+--|+.||+.
T Consensus 168 l~qFY~Kv~k 177 (190)
T 4emc_A 168 LNQFYNKIAK 177 (190)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4567777773
No 104
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=38.29 E-value=1.6e+02 Score=24.67 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 324 SAHEKHEMSKLQKDIEEKKQENAELIKSQ 352 (640)
Q Consensus 324 ~~~~k~~~~~~~~~~e~~~~~~~~l~~~~ 352 (640)
+-.++.++..+...|+.+..++++|....
T Consensus 17 SykeqrEle~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 17 SYKLQRELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777776666666655543
No 105
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=38.19 E-value=1.4e+02 Score=23.08 Aligned_cols=49 Identities=20% Similarity=0.143 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 427 ELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAAL 475 (640)
Q Consensus 427 eLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLe 475 (640)
.+...++.....++....++..+...+.....++..+++.+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555666666666666666666667766666665543
No 106
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=37.82 E-value=1.1e+02 Score=28.26 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 382 MVQQLSVQKLELEDLVSKQAEEIVDLEAL 410 (640)
Q Consensus 382 MVEELTEKNleLEEKIeELEetIeDLEaL 410 (640)
.|++|..+..+|..+|.+|+..+.+++..
T Consensus 62 ~leeL~~ki~eL~~kvA~le~e~~~~e~~ 90 (125)
T 2pms_C 62 KLEELSDKIDELDAEIAKLEDQLKAAEEN 90 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCC-
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 34667777777777777777777666643
No 107
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=37.76 E-value=1.9e+02 Score=25.54 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhh
Q psy15551 89 ELEKLKQEKQEAVEAKE--DTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIE 157 (640)
Q Consensus 89 el~~~k~~~~e~~~~~e--~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e 157 (640)
+|..++..+..+..+.. ++....-..|-+-+|-.+|+.++.+.+.. ..+.++..-|+.||.||-
T Consensus 30 El~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArLAeAka~~~Ka~-----~~~~el~~~I~~LrqEl~ 95 (98)
T 4fm3_A 30 ELKLAQDKYAAAQIAMTAESYKKARLLAEQAELDARLAESKVLTQKSK-----DQLGELDKSLKRLRKQLG 95 (98)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhc
Confidence 55566666666655443 56666777888999999999999887653 446666666777777663
No 108
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=36.74 E-value=1.2e+02 Score=27.15 Aligned_cols=8 Identities=38% Similarity=0.605 Sum_probs=3.1
Q ss_pred hhcccccc
Q psy15551 309 IFNNKNKF 316 (640)
Q Consensus 309 ~~~~~~~~ 316 (640)
+.|.|+-+
T Consensus 21 LDNEKsal 28 (103)
T 4h22_A 21 LDNEKTNF 28 (103)
T ss_dssp HHHHHHHH
T ss_pred hccHHHHH
Confidence 33334433
No 109
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=36.67 E-value=1.6e+02 Score=26.78 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy15551 379 AEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDA 421 (640)
Q Consensus 379 AEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnh 421 (640)
.++-++-+..+...++..+..++..+..+. .+..+...+++..
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888888888877 6666666665543
No 110
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=36.41 E-value=41 Score=35.93 Aligned_cols=61 Identities=23% Similarity=0.255 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy15551 88 RELEKLKQEKQEAVEAKEDTADLVETLEMMT---LDKEMAEERAETLQVELDLAKEKIEELTLDIELM 152 (640)
Q Consensus 88 ~el~~~k~~~~e~~~~~e~~~d~~~~lem~t---ldkemaee~~e~l~~el~~~k~k~eel~le~e~l 152 (640)
+++..++.........+....|+.+..||+. -|.||. +.++.|+..++.++++++.++..|
T Consensus 50 ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~e~D~e~~----~~a~~e~~~l~~~l~~le~~l~~l 113 (371)
T 1zbt_A 50 REEANSRETVAVYREYKQVVQNIADAQEMIKDASGDPELE----EMAKEELKNSKVAKEEYEEKLRFL 113 (371)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHH----HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444445556666666653 255554 456677788888888888776654
No 111
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=36.07 E-value=1e+02 Score=24.25 Aligned_cols=37 Identities=27% Similarity=0.359 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 330 EMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQV 373 (640)
Q Consensus 330 ~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~ 373 (640)
.+..|+...+.+..+|.+ |..++..+...+..|+.+|
T Consensus 23 ~~~~Le~~~~~L~~~n~~-------L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQ-------LQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444 4445555566666666554
No 112
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=35.70 E-value=1.2e+02 Score=24.36 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 330 EMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQ 372 (640)
Q Consensus 330 ~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q 372 (640)
.++.++...+.+.++|.+ |+.++..++..+..|+.-
T Consensus 24 ~~~~le~~~~~L~~~N~~-------L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEA-------LKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444 444455555555555543
No 113
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=33.63 E-value=1.6e+02 Score=23.42 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 346 AELIKSQEKLKQRVTELEADCADLHEQV 373 (640)
Q Consensus 346 ~~l~~~~~~l~~kL~~~e~~~~~l~~q~ 373 (640)
..|......|..++..+...+..|+..|
T Consensus 33 ~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 33 DQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444445555555555544
No 114
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=33.00 E-value=1.4e+02 Score=26.57 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 119 LDKEMAEERAETLQVELDLAKEKIEEL 145 (640)
Q Consensus 119 ldkemaee~~e~l~~el~~~k~k~eel 145 (640)
...+-+++..+.||.|++.+++++.-|
T Consensus 68 ~a~~~~~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 68 VARQRLREDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666777777777777766443
No 115
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=32.35 E-value=5e+02 Score=28.72 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=31.2
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 400 QAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRE 465 (640)
Q Consensus 400 LEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRE 465 (640)
-...+.+.+ .+.+++++|+..+.-+...+...+ ..|+-|+.-|+.+...|..+|..|.-=.+
T Consensus 98 ~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi----~~IrvLq~~l~~q~skIQRLE~dI~~q~~ 160 (491)
T 1m1j_A 98 GLEGAQQLDENYGHVSTELRRRIVTLKQRVATQV----NRIKALQNSIQEQVVEMKRLEVDIDIKIR 160 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444 555555555544443332222222 55555566666666666666666654443
No 116
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=32.11 E-value=3e+02 Score=25.17 Aligned_cols=12 Identities=25% Similarity=0.382 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy15551 330 EMSKLQKDIEEK 341 (640)
Q Consensus 330 ~~~~~~~~~e~~ 341 (640)
+...|..+.+.+
T Consensus 30 eN~~Lk~e~e~l 41 (155)
T 2oto_A 30 ENKDLKARLENA 41 (155)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 117
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=31.49 E-value=2.3e+02 Score=23.77 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 386 LSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 386 LTEKNleLEEKIeELEetIeDLE 408 (640)
++.+..+++.+-.+|+.+|..++
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le 27 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEME 27 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444444444444444444444
No 118
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=30.91 E-value=3.1e+02 Score=25.04 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy15551 384 QQLSVQKLELEDLVSKQAEEI 404 (640)
Q Consensus 384 EELTEKNleLEEKIeELEetI 404 (640)
..|...|..|++++.++....
T Consensus 60 ~~Le~~n~~L~~~lke~~~~~ 80 (155)
T 2oto_A 60 QALEDQRKDLETKLKELQQDY 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444554444444443
No 119
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=30.75 E-value=2.5e+02 Score=23.94 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15551 336 KDIEEKKQENAELIKSQEKL 355 (640)
Q Consensus 336 ~~~e~~~~~~~~l~~~~~~l 355 (640)
..+.....|+..|..+.+.|
T Consensus 18 E~~~q~qaEl~sLrrT~~EL 37 (78)
T 3iv1_A 18 EEMDRAQAELNALKRTEEDL 37 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 33344444444444444444
No 120
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=30.50 E-value=1.1e+02 Score=30.45 Aligned_cols=15 Identities=20% Similarity=0.173 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy15551 440 REVIREKEAALESLA 454 (640)
Q Consensus 440 rEL~rRIeq~eEqLE 454 (640)
...+.++...+..+.
T Consensus 139 ~~~~~~l~~a~~~l~ 153 (369)
T 4dk0_A 139 KQAEIEVNTAETNLG 153 (369)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhh
Confidence 333333334444333
No 121
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=30.34 E-value=63 Score=25.63 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=21.6
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 377 LGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 377 ~gAEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
-.++..|+.|+.+|..|..+|..|..++..|.
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777777777777777766554
No 122
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=30.30 E-value=42 Score=37.21 Aligned_cols=89 Identities=18% Similarity=0.261 Sum_probs=11.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy15551 63 DEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE----DTADLVETLEMMTLDKEMAEERAETLQVELDLA 138 (640)
Q Consensus 63 ~~~~~~~~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e----~~~d~~~~lem~tldkemaee~~e~l~~el~~~ 138 (640)
.+|...+.++.+--.+.++.....++....|-.+++.++++.+ .-.++.+.++-+....+|.++.-+.|..++..+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~ 417 (575)
T 2i1j_A 338 QEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAK 417 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444444444333344444444444444444445555544444 334455555555566666666666666666655
Q ss_pred HHHHHHHhhhHHH
Q psy15551 139 KEKIEELTLDIEL 151 (640)
Q Consensus 139 k~k~eel~le~e~ 151 (640)
..++..|..+.+.
T Consensus 418 ~~~~~~~~~~~~~ 430 (575)
T 2i1j_A 418 QEEVSRIQQEVEL 430 (575)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 5555555444433
No 123
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=30.12 E-value=67 Score=23.03 Aligned_cols=25 Identities=40% Similarity=0.607 Sum_probs=19.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHH
Q psy15551 115 EMMTLDKEMAEERAETLQVELDLAK 139 (640)
Q Consensus 115 em~tldkemaee~~e~l~~el~~~k 139 (640)
|.+.|.||+|.-.+|..|.|-+.++
T Consensus 2 evaqlekevaqaeaenyqleqevaq 26 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQ 26 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5678899999999988887765544
No 124
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=30.05 E-value=54 Score=25.51 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 342 KQENAELIKSQEKLKQRVTELEADC 366 (640)
Q Consensus 342 ~~~~~~l~~~~~~l~~kL~~~e~~~ 366 (640)
..-++++..++.||+++++.+|..+
T Consensus 22 ArLlae~~ssq~KlKqRit~lE~~v 46 (46)
T 3swy_A 22 ARLLAEYNATQMKMKQRLSQLESQV 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456778889999999999998753
No 125
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=30.04 E-value=88 Score=26.56 Aligned_cols=30 Identities=37% Similarity=0.307 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 342 KQENAELIKSQEKLKQRVTELEADCADLHE 371 (640)
Q Consensus 342 ~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~ 371 (640)
..-++++..++.||+++++.+|..+..+..
T Consensus 24 ARLLaEy~ssQ~KLKqRit~LE~~~~~~~~ 53 (74)
T 3swf_A 24 ARILAEYESMQQKLKQRLTKVEKFLKPLID 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 345678889999999999999998877544
No 126
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=29.89 E-value=3.4e+02 Score=25.17 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy15551 106 DTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELM 152 (640)
Q Consensus 106 ~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~l 152 (640)
.+.+..-.|-++.-|=+=|++|++.+...+..+.+.+.-+.-.+--|
T Consensus 74 KyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsL 120 (147)
T 2b9c_A 74 KYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSL 120 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566667778888888899999988887776666655555444443
No 127
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=29.53 E-value=84 Score=24.08 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 345 NAELIKSQEKLKQRVTELEADCADLHEQVDA 375 (640)
Q Consensus 345 ~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~ 375 (640)
..++...++.|..+++.+|..++.|.+++.+
T Consensus 11 vsel~~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 11 ISDLNERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5667778888888999999999988888754
No 128
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=29.49 E-value=1.7e+02 Score=25.37 Aligned_cols=51 Identities=25% Similarity=0.332 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy15551 337 DIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLS 387 (640)
Q Consensus 337 ~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELT 387 (640)
-+.+--+||..|.+..+.+..++..+......|++--+-+--.-.||+.||
T Consensus 32 AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i~~L~ 82 (83)
T 1wlq_A 32 ALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIERLS 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445566666665555555555555555555555444444455555543
No 129
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=29.35 E-value=76 Score=25.17 Aligned_cols=22 Identities=23% Similarity=0.367 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15551 352 QEKLKQRVTELEADCADLHEQV 373 (640)
Q Consensus 352 ~~~l~~kL~~~e~~~~~l~~q~ 373 (640)
...|..++..+...+..|+.+|
T Consensus 38 n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 38 NSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555554
No 130
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=29.15 E-value=2.3e+02 Score=28.11 Aligned_cols=42 Identities=24% Similarity=0.363 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 77 AKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMT 118 (640)
Q Consensus 77 ~~~~~~~~~~~~el~~~k~~~~e~~~~~e~~~d~~~~lem~t 118 (640)
.++.+....++.++..+|++..++.+-.+.+..+.+.|+.++
T Consensus 118 ~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~ 159 (209)
T 2wvr_A 118 EKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555556777777777777777777777777777766554
No 131
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=28.92 E-value=3.8e+02 Score=25.43 Aligned_cols=43 Identities=14% Similarity=0.042 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy15551 382 MVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEI 424 (640)
Q Consensus 382 MVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~ 424 (640)
.|..|+...-.++.+|..+++.+..-. .+..++||+...++++
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~ 112 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIEN 112 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555556666666666655555 5555556655555544
No 132
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=27.73 E-value=2.5e+02 Score=25.95 Aligned_cols=40 Identities=38% Similarity=0.587 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 334 LQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAAL 377 (640)
Q Consensus 334 ~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~ 377 (640)
++.+++.+..++..| +.|+.++.++...|++|.-+|..+-
T Consensus 49 ~qsele~k~aeLe~l----eeL~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 49 LQSKLDAKKAKLSKL----EELSDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 455566655555554 5577777888888888888887544
No 133
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=27.26 E-value=3.8e+02 Score=24.86 Aligned_cols=30 Identities=10% Similarity=0.128 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 379 AEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 379 AEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
++-+...|..+-..-+++|..|+..+.+..
T Consensus 36 ~eR~~k~lE~r~~~deEr~~~lE~qLkeak 65 (147)
T 2b9c_A 36 SERGMKVIESRAQKDEEKMEIQEIQLKEAK 65 (147)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 334455566666666666666666666555
No 134
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=27.16 E-value=1.6e+02 Score=29.02 Aligned_cols=15 Identities=13% Similarity=0.104 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy15551 440 REVIREKEAALESLA 454 (640)
Q Consensus 440 rEL~rRIeq~eEqLE 454 (640)
......+...+..+.
T Consensus 138 ~~a~a~l~~a~~~l~ 152 (341)
T 3fpp_A 138 KRNQASLDTAKTNLD 152 (341)
T ss_dssp HHTHHHHTTTTTTTT
T ss_pred HHHHHHHHHHHHhhh
Confidence 333333333333333
No 135
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=27.00 E-value=98 Score=22.69 Aligned_cols=24 Identities=4% Similarity=0.185 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 379 AEEMVQQLSVQKLELEDLVSKQAE 402 (640)
Q Consensus 379 AEEMVEELTEKNleLEEKIeELEe 402 (640)
+|+.||+|..+|-.|+.+|.-|++
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 455666666666666666666554
No 136
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=26.44 E-value=1.4e+02 Score=25.83 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15551 354 KLKQRVTELEADCADLHEQV 373 (640)
Q Consensus 354 ~l~~kL~~~e~~~~~l~~q~ 373 (640)
.|+.++..+...+..|+..+
T Consensus 54 ~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 54 RLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433
No 137
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=26.35 E-value=1.8e+02 Score=26.98 Aligned_cols=115 Identities=21% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhhchhhhhhccc
Q psy15551 124 AEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNN 203 (640)
Q Consensus 124 aee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvrlRd~s~~~~~~~~ 203 (640)
+..+.+....+-..+.+|.-.++-.+-.+..|++..... -+|++.+|+-|+.-+.-||--=|-.+
T Consensus 14 sqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq-------~~~~~d~L~lQ~esmeaalkmEr~~~-------- 78 (130)
T 3cl3_D 14 SQSRLEAATKECQALEGRARAASEQARQLESEREALQQQ-------HSVQVDQLRMQGQSVEAALRMERQAA-------- 78 (130)
T ss_dssp -------------------------------------CT-------TTHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q ss_pred ccchhhhhhhhhhhhcccccchhhhhhhhhhhhccccccchhhchhhhhhhccccccchhhhhhhhhhhhccccccchhh
Q psy15551 204 KFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLYDLSAHEIFNNKNKFDSRLRDLSAHEIFNNKNKFDSRL 283 (640)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (640)
T Consensus 79 -------------------------------------------------------------------------------- 78 (130)
T 3cl3_D 79 -------------------------------------------------------------------------------- 78 (130)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Q ss_pred hhhhhhhhhcccccchhhhhhhhhhhhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 284 RDLSAHEIFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELE 363 (640)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e 363 (640)
.++|..+..|+---..+-++-.+.+++...-..+....
T Consensus 79 -----------------------------------------~eEKrkLAqLQ~AY~~LfqeYd~~lK~~~~~~e~~~~~- 116 (130)
T 3cl3_D 79 -----------------------------------------SEEKRKLAQLQVAYHQLFQEYDNHIKSSVVGSERKRGM- 116 (130)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc-
Q ss_pred HHHHHHHHHHHHh
Q psy15551 364 ADCADLHEQVDAA 376 (640)
Q Consensus 364 ~~~~~l~~q~d~a 376 (640)
++.||++|++.|
T Consensus 117 -ql~dL~qqLq~a 128 (130)
T 3cl3_D 117 -QLEDLKQQLQQA 128 (130)
T ss_dssp -------------
T ss_pred -hHHHHHHHHHHh
No 138
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=25.96 E-value=2.4e+02 Score=22.17 Aligned_cols=40 Identities=8% Similarity=0.004 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 438 ATREVIREKEAALESLADRELTIVKFRELVIREKEAALES 477 (640)
Q Consensus 438 qIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL 477 (640)
.++++.+++..+..+-..+..++...|+.+..|.++++.+
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456667777777777777777777777777777777654
No 139
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=25.93 E-value=63 Score=25.50 Aligned_cols=15 Identities=33% Similarity=0.308 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy15551 386 LSVQKLELEDLVSKQ 400 (640)
Q Consensus 386 LTEKNleLEEKIeEL 400 (640)
|..+|.+|.+++..+
T Consensus 39 l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 39 VLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 140
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=25.84 E-value=1.4e+02 Score=25.83 Aligned_cols=37 Identities=30% Similarity=0.375 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHhhhHHHHHHhhh
Q psy15551 121 KEMAEERAETLQVELD---LAKEKIEELTLDIELMKADIE 157 (640)
Q Consensus 121 kemaee~~e~l~~el~---~~k~k~eel~le~e~lk~e~e 157 (640)
+++||+|--.|..-|+ .+.+.|+.|.-++..||.+++
T Consensus 31 k~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~ 70 (83)
T 1uii_A 31 KEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENK 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888776665443 344444444444444444433
No 141
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=25.58 E-value=6.6e+02 Score=27.11 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 426 IELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAA 474 (640)
Q Consensus 426 KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedL 474 (640)
+.+.+|+...+..|......|..++..+......|.++++.|..+....
T Consensus 87 kkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 87 RKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 135 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777777777777777777777777777776665543
No 142
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=25.43 E-value=1.8e+02 Score=24.19 Aligned_cols=44 Identities=11% Similarity=0.004 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15551 433 EMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALE 476 (640)
Q Consensus 433 D~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeE 476 (640)
+-+...|.++..++..+.....++......++..|..|+.++..
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777766666777777777777777777654
No 143
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.35 E-value=2e+02 Score=30.38 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15551 353 EKLKQRVTELEADCADLH 370 (640)
Q Consensus 353 ~~l~~kL~~~e~~~~~l~ 370 (640)
+.+...+..++..+.+++
T Consensus 20 ~~l~~~~~~~~~~~~~~~ 37 (403)
T 4etp_A 20 AALKEKIKDTELGMKELN 37 (403)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333444433333
No 144
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=25.16 E-value=4.9e+02 Score=25.44 Aligned_cols=37 Identities=14% Similarity=0.265 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHHHHH
Q psy15551 5 IQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKA 41 (640)
Q Consensus 5 ~~~l~~kl~~~~~k~~ek~~~~~~~~~ql~q~~~~k~ 41 (640)
+..++.++.++..+.....+...++..||++...=|.
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~ 170 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKE 170 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666655666666666655554444
No 145
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=25.15 E-value=7.5e+02 Score=27.57 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy15551 175 KQLEQQNMRLRETLV 189 (640)
Q Consensus 175 ~qle~qN~rLreaLv 189 (640)
++|+.+.....+.++
T Consensus 382 ~~L~~~i~~~~~~~~ 396 (592)
T 1f5n_A 382 KELAAQLEKKRDDFC 396 (592)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 556555554444443
No 146
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=24.73 E-value=1.4e+02 Score=31.79 Aligned_cols=69 Identities=28% Similarity=0.278 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhhchhhhhhcccccchh
Q psy15551 129 ETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSR 208 (640)
Q Consensus 129 e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvrlRd~s~~~~~~~~~~~~~ 208 (640)
.+|..||+.++++++++.-.++-++++++... .++.+.+....+|.-.+..|++ |-.+--|
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~l~~~~~~rr~l~n~~~~l~g--------nIrV~vR 66 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCK-----------EQLFQSNMERKELHNTVMDLRD--------NIRVFCR 66 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHTC--------SEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhCC--------CEEEEEE
Confidence 67888999999999999999888888877732 3455566666667777766654 2345556
Q ss_pred hhhhhhhh
Q psy15551 209 LRDLSAHE 216 (640)
Q Consensus 209 ~~~~~~~~ 216 (640)
+|.+...|
T Consensus 67 vRP~~~~E 74 (412)
T 3u06_A 67 IRPPLESE 74 (412)
T ss_dssp ECCCCGGG
T ss_pred cCCCCchh
Confidence 66555555
No 147
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=24.12 E-value=3e+02 Score=30.16 Aligned_cols=19 Identities=21% Similarity=0.365 Sum_probs=14.3
Q ss_pred cchhhHHHHHHHHHHHhhh
Q psy15551 580 GSTENIEKCVTYFNTFYPV 598 (640)
Q Consensus 580 ~~~E~FEKI~~YFn~IFsv 598 (640)
.|.+.|+.+......||..
T Consensus 311 ~s~~e~e~ml~~~e~il~~ 329 (485)
T 3qne_A 311 KSWEEFDRMIGCSEEFYQS 329 (485)
T ss_dssp GHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888754
No 148
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=23.98 E-value=88 Score=26.87 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=16.6
Q ss_pred ChhhHHHHHHHHHHHHHHhhh
Q psy15551 1 MKAEIQDLKEKLDTMKIKYRE 21 (640)
Q Consensus 1 ~~~e~~~l~~kl~~~~~k~~e 21 (640)
|..++.+|+..++.|++.|-=
T Consensus 6 L~~ei~eLk~~ve~lEkERDF 26 (82)
T 3tq7_B 6 LNQQLVDLKLTVDGLEKERDF 26 (82)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888887776
No 149
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=23.68 E-value=3e+02 Score=27.35 Aligned_cols=55 Identities=22% Similarity=0.314 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy15551 337 DIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKL 391 (640)
Q Consensus 337 ~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNl 391 (640)
-|.+--.||..|....+.+..++..+......|++-++-+--+-.||+.|+..-.
T Consensus 109 AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~ 163 (209)
T 2wvr_A 109 ALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPL 163 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3455555676766666666666666666666666666666666666776665443
No 150
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=23.51 E-value=1.3e+02 Score=24.17 Aligned_cols=10 Identities=40% Similarity=0.597 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy15551 362 LEADCADLHE 371 (640)
Q Consensus 362 ~e~~~~~l~~ 371 (640)
+.+.++.|++
T Consensus 49 L~~ev~~Lr~ 58 (63)
T 2dgc_A 49 LENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 151
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=23.05 E-value=2e+02 Score=26.00 Aligned_cols=90 Identities=16% Similarity=0.134 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHH
Q psy15551 380 EEMVQQLSVQKLEL---EDLVSKQAEEIVDLEALQVVSDQLQEDAKE--------------------------IEIELKE 430 (640)
Q Consensus 380 EEMVEELTEKNleL---EEKIeELEetIeDLEaLkELnDELEEnhvE--------------------------~EKeLRE 430 (640)
..+++.|+.+...| ..++.+....++.++.+.+ +.. +..+- .+..+.+
T Consensus 22 ~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~--~~~-~ilvplg~~~yv~g~i~~~~~V~v~lG~g~~vE~~~~e 98 (151)
T 2zdi_C 22 QAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEE--EKP-EILVPIGAGSFLKGVIVDKNNAIVSVGSGYAVERSIDE 98 (151)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--SSC-EEEEECSSSCEEEEECSCTTEEEEEEETTEEEEEEHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCc-eEEEEcCCCeEEEEEECCCCEEEEEeCCCeEEEecHHH
Confidence 34566677777777 7777777777777665542 000 00000 1145666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 431 EVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKE 472 (640)
Q Consensus 431 ELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQe 472 (640)
-+++.+..+..+...+......+......|......+..++.
T Consensus 99 A~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 99 AISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666655555555544
No 152
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=22.98 E-value=2.7e+02 Score=21.88 Aligned_cols=31 Identities=16% Similarity=0.242 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 378 GAEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408 (640)
Q Consensus 378 gAEEMVEELTEKNleLEEKIeELEetIeDLE 408 (640)
|++..|..|++-|..|-.+|.+|+..-.++|
T Consensus 1 ~aeq~l~kLKe~n~~L~~kv~~Le~~c~~~e 31 (48)
T 3vmx_A 1 GSERQILRLKQINIQLATKIQHLEFSCSEKE 31 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 5666777777777777777777766666655
No 153
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=22.82 E-value=1.1e+02 Score=22.41 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 379 AEEMVQQLSVQKLELEDLVSKQAE 402 (640)
Q Consensus 379 AEEMVEELTEKNleLEEKIeELEe 402 (640)
+|+.|++|-.+|.+|+.+|.-|++
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 466677777777777777776654
No 154
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=22.79 E-value=1.1e+02 Score=25.49 Aligned_cols=44 Identities=9% Similarity=0.158 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 425 EIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVI 468 (640)
Q Consensus 425 EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~ 468 (640)
...+.+.|..++..|++++..+......|..+...+.+|+..+.
T Consensus 13 ~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 13 EEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34556666667777777766666666666666666666665544
No 155
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=22.49 E-value=1.5e+02 Score=22.21 Aligned_cols=27 Identities=44% Similarity=0.571 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 329 HEMSKLQKDIEEKKQENAELIKSQEKL 355 (640)
Q Consensus 329 ~~~~~~~~~~e~~~~~~~~l~~~~~~l 355 (640)
.+-.+|.++|+.+..+++.|....+.|
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 456778888988888888887766555
No 156
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=22.07 E-value=1.4e+02 Score=25.72 Aligned_cols=34 Identities=15% Similarity=0.324 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhh
Q psy15551 125 EERAETLQVELDLAKEKIEELTLDIELMKADIEK 158 (640)
Q Consensus 125 ee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~ 158 (640)
+.+++.|+.|-..++.+|+.|+.++..|+.-+-.
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888889999999999999888876554
No 157
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=21.73 E-value=1.6e+02 Score=21.96 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 379 AEEMVQQLSVQKLELEDLVSKQAEEIVD 406 (640)
Q Consensus 379 AEEMVEELTEKNleLEEKIeELEetIeD 406 (640)
+|+.||+|-.+|..|+.+|.-|+.-+..
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcc
No 158
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=21.63 E-value=1.1e+02 Score=23.22 Aligned_cols=29 Identities=41% Similarity=0.530 Sum_probs=24.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy15551 111 VETLEMMTLDKEMAEERAETLQVELDLAK 139 (640)
Q Consensus 111 ~~~lem~tldkemaee~~e~l~~el~~~k 139 (640)
.-.+.++-++|+-|.+||+.++.++...+
T Consensus 9 KKKMq~lK~ekd~A~drAe~~E~~~k~~~ 37 (40)
T 2z5i_I 9 KKKMQMLKLDKENALDRAEQLENEVARLK 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 34577889999999999999999887654
No 159
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=21.63 E-value=7.7e+02 Score=26.48 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy15551 379 AEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQ 418 (640)
Q Consensus 379 AEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELE 418 (640)
-.+|++-+..-..+|..-+.+|++.+.+.+ .....+.-|+
T Consensus 233 ~~elleVv~~Da~EL~~V~~eL~~~~~~i~~~~~~~~~~l~ 273 (413)
T 4hpq_C 233 AQNLFEIVERDDKDLAAINSLLQDAAIDVASFVRKVNMLLD 273 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 448999999999999999999999988888 3343444443
No 160
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=21.30 E-value=4.1e+02 Score=23.20 Aligned_cols=90 Identities=13% Similarity=0.061 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHH----HHHHHHHH
Q psy15551 379 AEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDA----------------------KEI----EIELKEEV 432 (640)
Q Consensus 379 AEEMVEELTEKNleLEEKIeELEetIeDLEaLkELnDELEEnh----------------------vE~----EKeLREEL 432 (640)
...+++.++.+...+...+.+++..++-++.|.. .+..+ .. +.. +..+.+-+
T Consensus 13 l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~-~~~~~-~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~ 90 (133)
T 1fxk_C 13 YQSQVELIQQQMEAVRATISELEILEKTLSDIQG-KDGSE-TLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAM 90 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CTTCE-EEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCe-EEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHHHH
Confidence 4556777777777777777777777777776653 11110 00 001 15556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 433 EMARSATREVIREKEAALESLADRELTIVKFRELVIRE 470 (640)
Q Consensus 433 D~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~L 470 (640)
++.+..+..+..++......+......|....+.+..+
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666555555555555555555444444444443
No 161
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=21.29 E-value=1.1e+02 Score=26.59 Aligned_cols=55 Identities=22% Similarity=0.343 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 388 VQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESL 453 (640)
Q Consensus 388 EKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqL 453 (640)
....++++-+.+|++++.||. ++.-+... --.||..+...+.++..++...+..+
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e~~-----------~~~EI~~Rk~~v~~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMKRD-----------ENEDVSGREAQVKNIKQQLDALKLRF 91 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----------TTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777 44332221 34556666666666666666555443
No 162
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=21.17 E-value=3.7e+02 Score=22.59 Aligned_cols=59 Identities=20% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy15551 334 LQKDIEEKKQENAELIKSQEKLKQRVT---ELEADCADLHEQVDAALGAEEMVQQLSVQKLE 392 (640)
Q Consensus 334 ~~~~~e~~~~~~~~l~~~~~~l~~kL~---~~e~~~~~l~~q~d~a~gAEEMVEELTEKNle 392 (640)
+.+++..+..|..++.....+..+.+. +-|..+..++.++...+.-|.++..-....+.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~E~~LK~QAVNKLA 63 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLA 63 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 163
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=21.01 E-value=8.9e+02 Score=26.96 Aligned_cols=100 Identities=13% Similarity=0.066 Sum_probs=48.1
Q ss_pred HHHHhhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy15551 372 QVDAALGAEE-MVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATR-EVIREKEA 448 (640)
Q Consensus 372 q~d~a~gAEE-MVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIr-EL~rRIeq 448 (640)
|-|.+|...+ .++.=..++...+.+...|++...+++ .+.+-...++++-.++...|.+|-...-.... -+..++..
T Consensus 477 q~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~ 556 (592)
T 1f5n_A 477 QTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQE 556 (592)
T ss_dssp HHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554443 566666666666666666666666666 34444444444444444444433332222211 22223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 449 ALESLADRELTIVKFRELVIREKEAALES 477 (640)
Q Consensus 449 ~eEqLEDlE~TIsKFRELV~~LQedLeEL 477 (640)
+..-+. .-|+.....++.+++++
T Consensus 557 ~~~~~~------~g~~~~~~~~~~ei~~l 579 (592)
T 1f5n_A 557 QEQLLK------EGFQKESRIMKNEIQDL 579 (592)
T ss_dssp HHHHHH------HTCHHHHHHHHHHHHHH
T ss_pred HHHHHH------HHHHHHHHHHHHHHHHH
Confidence 333333 23555555555555554
No 164
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=20.93 E-value=2.9e+02 Score=23.16 Aligned_cols=12 Identities=8% Similarity=0.088 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHH
Q psy15551 444 REKEAALESLAD 455 (640)
Q Consensus 444 rRIeq~eEqLED 455 (640)
.+++-+...|++
T Consensus 21 ~klAfqE~tIee 32 (78)
T 3efg_A 21 TRLSFQEQALTE 32 (78)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 165
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=20.86 E-value=2.3e+02 Score=25.42 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=11.2
Q ss_pred hHHHHhhHHHHHHHH
Q psy15551 55 YREKTRDLDEMKIQL 69 (640)
Q Consensus 55 d~~k~~~l~~~~~~~ 69 (640)
|-.|+|+.|-+-.+.
T Consensus 44 YF~KLRdIEiLcQe~ 58 (106)
T 4e61_A 44 YFNKLRDIEILVHTT 58 (106)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 778999988776554
No 166
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=20.65 E-value=1.2e+02 Score=24.40 Aligned_cols=31 Identities=29% Similarity=0.400 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 329 HEMSKLQKDIEEKKQENAELIKSQEKLKQRV 359 (640)
Q Consensus 329 ~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL 359 (640)
..+..|+..++.+..+|+.|....+.|++.+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666555555443
No 167
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=20.56 E-value=3.8e+02 Score=22.48 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 380 EEMVQQLSVQKLELEDLVSKQAEEIVD 406 (640)
Q Consensus 380 EEMVEELTEKNleLEEKIeELEetIeD 406 (640)
...++.+..+|..|+++|..++..+++
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~ 32 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEK 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 345666677777777777777777765
No 168
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=20.45 E-value=3.9e+02 Score=22.85 Aligned_cols=56 Identities=16% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551 63 DEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMT 118 (640)
Q Consensus 63 ~~~~~~~~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e~~~d~~~~lem~t 118 (640)
|+.+.-+....+=-.++......++.++..+|.+.+.+.+..+.+.-+.+.++-+|
T Consensus 23 E~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~laevl~~l~ 78 (79)
T 2zxx_A 23 EQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIERLS 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 169
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=20.20 E-value=4.6e+02 Score=23.31 Aligned_cols=27 Identities=30% Similarity=0.250 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551 79 IMESQAGLKRELEKLKQEKQEAVEAKE 105 (640)
Q Consensus 79 ~~~~~~~~~~el~~~k~~~~e~~~~~e 105 (640)
.++...+|+-||..|++.++++...++
T Consensus 65 qq~~v~elqgEI~~Lnq~Lqda~~~~~ 91 (99)
T 3ni0_A 65 QQARIKELENEVTKLNQELENLRIQKE 91 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566788888889998888876655
Done!