RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15551
(640 letters)
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 47.0 bits (112), Expect = 3e-05
Identities = 41/168 (24%), Positives = 90/168 (53%), Gaps = 12/168 (7%)
Query: 2 KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRD 61
K E++ L++ L+ ++ + E R L+E+K +L + E + + ++S+ E +
Sbjct: 694 KNELRSLEDLLEELRRQLEELERQLEELKREL-AALEEELEQLQSRLEELEEELEELEEE 752
Query: 62 LDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDT-----------ADL 110
L+E++ +L++ E + E+ A LK E+E+L++++Q E E+ L
Sbjct: 753 LEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDAL 812
Query: 111 VETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEK 158
LE + +E E+ E L+ E++ +EK++EL ++E ++ ++E+
Sbjct: 813 ERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEE 860
Score = 44.7 bits (106), Expect = 2e-04
Identities = 41/165 (24%), Positives = 93/165 (56%), Gaps = 7/165 (4%)
Query: 2 KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEF---KAKIMESQAASSLFRYREK 58
+ +++ +E L+ ++ E + L++++ Q +++ + KA++ E + A L + +E
Sbjct: 178 ERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKEL 237
Query: 59 TRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQE----AVEAKEDTADLVETL 114
++L+E++ +L + E ++ E ++E+E+LK E +E E +E+ +L E +
Sbjct: 238 RKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEI 297
Query: 115 EMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKS 159
E + + + ER E L+ EL+ +E++EEL IE +K ++E+
Sbjct: 298 EELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEER 342
Score = 42.8 bits (101), Expect = 6e-04
Identities = 70/402 (17%), Positives = 165/402 (41%), Gaps = 68/402 (16%)
Query: 86 LKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEEL 145
L+++LEKL+++ ++A +E L E+ E L +L ++++EEL
Sbjct: 198 LEKQLEKLERQAEKAERYQE-------------LKAELRELELALLLAKLKELRKELEEL 244
Query: 146 TLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKF 205
++ ++ ++E +L+++ + + L+
Sbjct: 245 EEELSRLEEELE------------------ELQEELEEAEKEIEELK------------- 273
Query: 206 DSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLYDLSAHEIFNNKNKFDSRLR 265
S L +L + ++ E + L E+ N + + RL
Sbjct: 274 -SELEELREELEELQEELLELKEEIEELEG------EISLLRERLEELENELEELEERLE 326
Query: 266 DLSAHEIFNNKNKFDSRLRDLSAHE--IFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDL 323
+L +I K + + R L E + + L + + + + F++ +L
Sbjct: 327 ELK-EKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREEL 385
Query: 324 SAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMV 383
+ E E+++++ ++EE K+E L + E+L +R+ +L+ + +L +++ + +
Sbjct: 386 AELEA-ELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEEL---QTEL 441
Query: 384 QQLSVQKLELEDLVSKQAEEIVDLE----ALQVVSDQLQEDAKEIEIELKEEVEMARS-- 437
++L+ + ELE+ + + + + +LE LQ +L+++ +E L R+
Sbjct: 442 EELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQ 501
Query: 438 ATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLA 479
R V+ E+ L + ++K +E + E ALE+
Sbjct: 502 GVRAVLEALESGLPGVYGPVAELIKVKE----KYETALEAAL 539
Score = 42.0 bits (99), Expect = 0.001
Identities = 75/365 (20%), Positives = 144/365 (39%), Gaps = 42/365 (11%)
Query: 2 KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRD 61
K ++ + KL+ + L+E++ QL++ +E QA + RY+E +
Sbjct: 171 KERKEEAERKLERTEENLERLEDLLEELEKQLEK--------LERQAEKAE-RYQELKAE 221
Query: 62 LDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDK 121
L E+ +L ++ + L+ EL +L++E +E E E+ +E L+ +
Sbjct: 222 LREL--ELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELK---SEL 276
Query: 122 EMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQN 181
E E E LQ EL KE+IEEL +I L++ +E+ + + E ++++L+++
Sbjct: 277 EELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEE----RLEELKEKI 332
Query: 182 MRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKF 241
L+E L L + + +L + +L L
Sbjct: 333 EALKEELEERETLLEELEQLLAELEEAKEEL-----------EEKLSALLEELEELFEAL 381
Query: 242 DSRLYDLSAH--EIFNNKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDS 299
L +L A EI N + + L + RL DL + +
Sbjct: 382 REELAELEAELAEIRNELEELKREIESLEE-----RLERLSERLEDLKEELKELEAELEE 436
Query: 300 RLRDLSAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRV 359
+L N+ L + + + +L++++ E ++E L K L+ R+
Sbjct: 437 LQTEL------EELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARL 490
Query: 360 TELEA 364
LEA
Sbjct: 491 DRLEA 495
Score = 42.0 bits (99), Expect = 0.001
Identities = 46/184 (25%), Positives = 86/184 (46%), Gaps = 10/184 (5%)
Query: 328 KHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLS 387
K +L++ EE + EL + QE+L++ E+E ++L E + +E + +L
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELK 294
Query: 388 VQKLELE----DLVSKQAEEIVDLEALQVVSDQLQE--DAKEIEIELKEEVEMARSATRE 441
+ ELE L + E +LE L+ ++L+E +A + E+E +E +
Sbjct: 295 EEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLA 354
Query: 442 VIREKEAALESLADRELTIVKFRELVIREKEAALESL---ADRELTIVKFRELNSLDEKV 498
+ E + LE L ++ +RE+ A LE+ EL +K RE+ SL+E++
Sbjct: 355 ELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELK-REIESLEERL 413
Query: 499 STEN 502
+
Sbjct: 414 ERLS 417
Score = 42.0 bits (99), Expect = 0.001
Identities = 71/365 (19%), Positives = 141/365 (38%), Gaps = 24/365 (6%)
Query: 36 SAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQ 95
+ + + K +E + A + + +L +K +L + ++ L+R+LE+LK+
Sbjct: 664 AQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKR 723
Query: 96 EKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKAD 155
E E E +E LE E EE E LQ L+ +E++E L + +K +
Sbjct: 724 ELAALEEELEQLQSRLEELEEE---LEELEEELEELQERLEELEEELESLEEALAKLKEE 780
Query: 156 IEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAH 215
IE+ + E ++LE+ RL L L + + ++
Sbjct: 781 IEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEEL 840
Query: 216 EI------FNNNKFDSRLRDLSAHEIFNNNKFDSRLYDLSAHEIFNNKNKFDSRLRDL-- 267
E + + L +L + + +L E K + + LR+L
Sbjct: 841 EEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELE--EEKEELEEELRELES 898
Query: 268 SAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHE 327
E+ K RL +L A + + L +L ++ ++ L
Sbjct: 899 ELAELKEEIEKLRERLEELEA----KLERLEVELPELEEELEEEYEDTLETELER----- 949
Query: 328 KHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLS 387
E+ +L+++IE N I+ E++++R EL++ DL E + L E + +
Sbjct: 950 --EIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEK 1007
Query: 388 VQKLE 392
++ +
Sbjct: 1008 RERFK 1012
Score = 40.9 bits (96), Expect = 0.002
Identities = 41/158 (25%), Positives = 78/158 (49%), Gaps = 2/158 (1%)
Query: 1 MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTR 60
++ EI++L+EKLD ++ + E ++L+E+K +L++ K + +E + E
Sbjct: 833 LEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEE-LEDELKELEEEKEELEE 891
Query: 61 DLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLD 120
+L E++ +L + E K+ E L+ +LE+L+ E E E E+ + E+
Sbjct: 892 ELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREI 951
Query: 121 KEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEK 158
+ + EE V L A E+ EE+ E +K+ E
Sbjct: 952 ERLEEEIEALGPVNLR-AIEEYEEVEERYEELKSQRED 988
Score = 39.7 bits (93), Expect = 0.005
Identities = 70/364 (19%), Positives = 140/364 (38%), Gaps = 17/364 (4%)
Query: 95 QEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKA 154
+ K+ ++ K + +L E L + E EE ++L+ EL ++ +EEL +E ++
Sbjct: 657 RNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELER 716
Query: 155 DIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSA 214
+E+ +++QL+ + L E L L + + + L L
Sbjct: 717 QLEE----LKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEE 772
Query: 215 HEIFNNNKFDSRLRDLSA-HEIFNNNKFDSRLYDLSAHEIFNNKNKFDSRLRDLSAHEIF 273
+ + A E + + + + + R L EI
Sbjct: 773 ALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERL-EQEIE 831
Query: 274 NNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEKHEMSK 333
+ + + L E + + L +L L D + E +
Sbjct: 832 ELEEEIEELEEKLDELEE-ELEELEKELEELKEE--LEELEAEKEELEDELKELEEEKEE 888
Query: 334 LQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLEL 393
L++++ E + E AEL + EKL++R+ ELEA L ++ E + +++ EL
Sbjct: 889 LEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLET-EL 947
Query: 394 EDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESL 453
E + + EEI L + + + + E+ +E ELK + E ++ KE LE +
Sbjct: 948 EREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQRE-------DLEEAKEKLLEVI 1000
Query: 454 ADRE 457
+ +
Sbjct: 1001 EELD 1004
Score = 38.5 bits (90), Expect = 0.012
Identities = 41/208 (19%), Positives = 91/208 (43%), Gaps = 3/208 (1%)
Query: 295 NKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEK 354
+ + L L E+ + + + +++ K E+ +L++++EE ++E EL + E+
Sbjct: 242 EELEEELSRLEE-ELEELQEELEEAEKEIEEL-KSELEELREELEELQEELLELKEEIEE 299
Query: 355 LKQRVTELEADCADLHEQVDAALGAEEMVQ-QLSVQKLELEDLVSKQAEEIVDLEALQVV 413
L+ ++ L +L +++ E ++ ++ K ELE+ + E L L+
Sbjct: 300 LEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEA 359
Query: 414 SDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEA 473
++L+E + EL+E E R E+ E L + + I E + R E
Sbjct: 360 KEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSER 419
Query: 474 ALESLADRELTIVKFRELNSLDEKVSTE 501
+ + + + EL + E+++ E
Sbjct: 420 LEDLKEELKELEAELEELQTELEELNEE 447
Score = 38.5 bits (90), Expect = 0.012
Identities = 45/195 (23%), Positives = 91/195 (46%), Gaps = 17/195 (8%)
Query: 327 EKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADL----------HEQVDAA 376
+K E+ +L++++ E + + +L + + LK + LE +L E++
Sbjct: 665 QKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRE 724
Query: 377 LGA-----EEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEE 431
L A E++ +L + ELE+L + E LE L+ + L+E +++ E+ EE
Sbjct: 725 LAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEI-EE 783
Query: 432 VEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELTIVK-FRE 490
+E R A +E + E E LE R + + E + + +E + + + E I + +
Sbjct: 784 LEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEK 843
Query: 491 LNSLDEKVSTENIEK 505
L+ L+E++ E
Sbjct: 844 LDELEEELEELEKEL 858
Score = 37.8 bits (88), Expect = 0.020
Identities = 46/219 (21%), Positives = 99/219 (45%), Gaps = 6/219 (2%)
Query: 1 MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAE--FKAKIMESQAASSLFRYREK 58
++ E+++L+E+L+ + + E +L+E++ +L++ E + K + + RE+
Sbjct: 251 LEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRER 310
Query: 59 TRDLD-EMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMM 117
+L+ E++ ++ E K KI + L+ L++ +Q E +E +L E L
Sbjct: 311 LEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS-- 368
Query: 118 TLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQL 177
E EE E L+ EL + ++ E+ ++E +K +IE + +E ++L
Sbjct: 369 -ALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEEL 427
Query: 178 EQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHE 216
++ L E L +L+ + + L E
Sbjct: 428 KELEAELEELQTELEELNEELEELEEQLEELRDRLKELE 466
Score = 35.8 bits (83), Expect = 0.078
Identities = 53/234 (22%), Positives = 99/234 (42%), Gaps = 12/234 (5%)
Query: 281 SRLRDLSAHEIFNNNKFDSRLRDLSAH--EIFNNKNKFDSRLRDLS---AHEKHEMSKLQ 335
L+ A + SRL +L E+ + RL +L + ++KL+
Sbjct: 719 EELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLK 778
Query: 336 KDIEE----KKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKL 391
++IEE ++ EL + +E+L++ L+A +L E+ +++L +
Sbjct: 779 EEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIE 838
Query: 392 ELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALE 451
ELE+ + + EE+ +LE + E+ + + EL++E++ E+ E
Sbjct: 839 ELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELES 898
Query: 452 SLADRELTIVKFRELVIREKEAALESLADRELTIVKFRELNSLDEKVSTENIEK 505
LA+ + I K RE + E EA LE L + EL E +E+
Sbjct: 899 ELAELKEEIEKLRER-LEELEAKLERLEVELPEL--EEELEEEYEDTLETELER 949
Score = 30.5 bits (69), Expect = 3.7
Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 11/160 (6%)
Query: 332 SKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAA-----LGAEEMVQQL 386
SK ++ EE +++ ++ E+L+ + ELE L Q + A L AE +L
Sbjct: 168 SKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELEL 227
Query: 387 SVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREK 446
++ +L++L + E +L L+ ++LQE+ +E E E+ EE++ RE + E
Sbjct: 228 ALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEI-EELKSELEELREELEEL 286
Query: 447 EAAL----ESLADRELTIVKFRELVIREKEAALESLADRE 482
+ L E + + E I RE + E E LE L +R
Sbjct: 287 QEELLELKEEIEELEGEISLLRE-RLEELENELEELEERL 325
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 46.2 bits (110), Expect = 5e-05
Identities = 37/183 (20%), Positives = 81/183 (44%), Gaps = 19/183 (10%)
Query: 4 EIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLD 63
E +DL E+L+ ++ + E +++ + Q +Q+ E + +A L + E+ +L+
Sbjct: 200 EEKDLHERLNGLESELAELDEEIERYEEQREQARETR-----DEADEVLEEHEERREELE 254
Query: 64 EMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEM 123
++ +++ E A+ + L E+ L++ E +E+ DL+ + D E
Sbjct: 255 TLEAEIEDLRETIAETEREREELAEEVRDLRER---LEELEEERDDLLAEAGLDDADAEA 311
Query: 124 AEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMR 183
E R E L+ + ++++EE + + + E + A LE++
Sbjct: 312 VEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDA-----------DDLEERAEE 360
Query: 184 LRE 186
LRE
Sbjct: 361 LRE 363
Score = 40.0 bits (94), Expect = 0.004
Identities = 40/152 (26%), Positives = 80/152 (52%), Gaps = 15/152 (9%)
Query: 338 IEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLV 397
IEE ++ EL E L++ V E+E E+ + + AE+ +++L ++ +LE+L+
Sbjct: 470 IEEDRERVEELEAELEDLEEEVEEVEER----LERAEDLVEAEDRIERLEERREDLEELI 525
Query: 398 SKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSA------TREVIREKEAALE 451
+ + E ++ + + ++L+E A E+E E +E+ E A A RE + E + L
Sbjct: 526 A-ERRETIEEKRERA--EELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLA 582
Query: 452 SLADRELTIVKFRELV--IREKEAALESLADR 481
L +R ++ + R L+ I + E +E L ++
Sbjct: 583 ELKERIESLERIRTLLAAIADAEDEIERLREK 614
Score = 38.5 bits (90), Expect = 0.012
Identities = 47/187 (25%), Positives = 76/187 (40%), Gaps = 27/187 (14%)
Query: 328 KHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQ-- 385
+ E+ L++ I E ++E EL + L++R+ ELE + DL + E V+
Sbjct: 257 EAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARR 316
Query: 386 --LSVQKLELEDLVSKQ--------------AEEIVDLEALQVVSDQLQEDAKEIEIEL- 428
L + EL D + + E+ DLE +++L+E+A E+E EL
Sbjct: 317 EELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEER---AEELREEAAELESELE 373
Query: 429 --KEEVEMARS---ATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADREL 483
+E VE R E I E F E + E++ E A+ E
Sbjct: 374 EAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEA 433
Query: 484 TIVKFRE 490
T+ RE
Sbjct: 434 TLRTARE 440
Score = 32.7 bits (75), Expect = 0.64
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 332 SKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKL 391
+L+ +EE + + E L++ +LE +L E+ A E+ +L +
Sbjct: 324 EELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREE------AAELESELEEARE 377
Query: 392 ELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALE 451
+ED + E ++E L+ D E + EE+ R RE E EA L
Sbjct: 378 AVEDRREEIEELEEEIEELRERFGDAPVDLGNAE-DFLEELREERDELREREAELEATLR 436
Query: 452 SLADR 456
+ +R
Sbjct: 437 TARER 441
Score = 32.7 bits (75), Expect = 0.77
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 54 RYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVET 113
RE DL+E ++ E + + E ++ L+ E ++ ++E E +E+ +L E
Sbjct: 346 SLREDADDLEE------RAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRER 399
Query: 114 LEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEK 158
+D AE+ E L+ E D +E+ EL + + +E+
Sbjct: 400 FGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEE 444
Score = 31.5 bits (72), Expect = 1.8
Identities = 37/152 (24%), Positives = 73/152 (48%), Gaps = 10/152 (6%)
Query: 3 AEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIME--SQAASSLFRYREKTR 60
AE++DL+E+++ ++ + E+ DL E + ++++ E + + E ++ ++ RE+
Sbjct: 482 AELEDLEEEVEEVEERL-ERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAE 540
Query: 61 DLDEMKIQLDQSAEFK---AKIMESQAGLKRE----LEKLKQEKQEAVEAKEDTADLVET 113
+L E +L+ AE K A E +A RE L E +E +E+ E L+
Sbjct: 541 ELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAA 600
Query: 114 LEMMTLDKEMAEERAETLQVELDLAKEKIEEL 145
+ + E E+ E L D +E++ E
Sbjct: 601 IADAEDEIERLREKREALAELNDERRERLAEK 632
Score = 30.4 bits (69), Expect = 3.2
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 19/192 (9%)
Query: 20 REKTRDLDEMKIQLDQSAEFKAKIMESQAA-----SSLFRYREKTRDLDEMKIQLDQSAE 74
RE+ +L+ +L + E +I AA + R REK L E+ D+ E
Sbjct: 571 REEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELN---DERRE 627
Query: 75 FKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVE 134
A+ E + L+ E ++ + E EA+ED E LE + + E + LQ E
Sbjct: 628 RLAEKRERKRELEAEFDEARIE-----EAREDKERAEEYLEQVEEKLDELREERDDLQAE 682
Query: 135 LDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDL 194
+ + ++EEL E +A +E + E + + ++LE LR L R R++
Sbjct: 683 IGAVENELEELEELRERREA-LENRV----EALEALYDEAEELESMYGDLRAEL-RQRNV 736
Query: 195 SAHEIFNNNKFD 206
E N FD
Sbjct: 737 ETLERMLNETFD 748
Score = 30.0 bits (68), Expect = 5.0
Identities = 33/169 (19%), Positives = 68/169 (40%), Gaps = 30/169 (17%)
Query: 336 KDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELED 395
+ + ++ S ++LK ++ E E DLHE+++ + +L+ E+E
Sbjct: 179 ERVLSDQRG------SLDQLKAQIEEKEE--KDLHERLNG------LESELAELDEEIER 224
Query: 396 LVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLAD 455
++ + + V ++ +E +E+E L+ E+E R E RE+E LA+
Sbjct: 225 YEEQREQARETRDEADEVLEEHEERREELE-TLEAEIEDLRETIAETEREREE----LAE 279
Query: 456 RELTIVKFRELVIREKEAALESLADRELTIVKFRELNSLDEKVSTENIE 504
+R+ LE L + ++ L+ D + E
Sbjct: 280 E-----------VRDLRERLEELEEERDDLLAEAGLDDADAEAVEARRE 317
Score = 29.2 bits (66), Expect = 9.5
Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 30/149 (20%)
Query: 337 DIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQ------------------------ 372
D+ + EL + +++L++R ELEA E+
Sbjct: 406 DLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSP 465
Query: 373 -VDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQ---LQEDAKEIE--I 426
V+ E V++L + +LE+ V + E + E L D+ L+E +++E I
Sbjct: 466 HVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELI 525
Query: 427 ELKEEVEMARSATREVIREKEAALESLAD 455
+ E + E +RE+ A LE+ A+
Sbjct: 526 AERRETIEEKRERAEELRERAAELEAEAE 554
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 44.7 bits (106), Expect = 2e-04
Identities = 42/192 (21%), Positives = 91/192 (47%), Gaps = 14/192 (7%)
Query: 17 IKYREKTRDLDEMKIQL--DQSAEFKAKI--MESQAASSLFRYREKTRDLDEMKIQLDQS 72
+Y+E +L E+++ L + E + ++ ++ + + E T +L E++ +L++
Sbjct: 213 ERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEEL 272
Query: 73 ----AEFKAKIMESQAGL---KRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAE 125
+E + +I E Q L E+ +L+Q+KQ E +L LE + E E
Sbjct: 273 RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA---NLERQLEELEAQLEELE 329
Query: 126 ERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLR 185
+ + L EL +EK+EEL ++E ++A++E+ + +QLE ++
Sbjct: 330 SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
Query: 186 ETLVRLRDLSAH 197
+ +++ L+
Sbjct: 390 QLELQIASLNNE 401
Score = 43.9 bits (104), Expect = 3e-04
Identities = 44/202 (21%), Positives = 96/202 (47%), Gaps = 14/202 (6%)
Query: 2 KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKI---------MESQAASSL 52
+ + +L+++L+ ++ + + ++L+E+ Q+ + A++ +Q + L
Sbjct: 697 EKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
Query: 53 FRYREKTRDLDEMKIQL-DQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLV 111
+ +L+E + ++ AE +A+I E +A +++ E+LK ++ E + + L
Sbjct: 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN 816
Query: 112 ETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSH 171
E + E E R + L+ +E+IEEL+ DIE + A+IE+ + E
Sbjct: 817 EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE----LEELIEELE 872
Query: 172 YQIKQLEQQNMRLRETLVRLRD 193
+++ L + L E L LR
Sbjct: 873 SELEALLNERASLEEALALLRS 894
Score = 42.4 bits (100), Expect = 7e-04
Identities = 41/175 (23%), Positives = 83/175 (47%), Gaps = 21/175 (12%)
Query: 2 KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQS----AEFKAKIMESQAASSLFRYRE 57
+ E+++L+E+L + + E T +L E++ +L++ +E + +I E Q L+
Sbjct: 238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKE--LYALAN 295
Query: 58 KTRDLDEMKIQLDQS---------------AEFKAKIMESQAGLKRELEKLKQEKQEAVE 102
+ L++ K L + E ++K+ E L EKL++ K+E
Sbjct: 296 EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELES 355
Query: 103 AKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIE 157
+ + +L LE + E EE+ ETL+ ++ + +I L +IE ++A +E
Sbjct: 356 LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE 410
Score = 38.1 bits (89), Expect = 0.017
Identities = 44/209 (21%), Positives = 91/209 (43%), Gaps = 11/209 (5%)
Query: 281 SRLRDLSAHEIFNNNKFDSRLRDLSAHE--IFNNKNKFDSRLRDLSAHEKHEMSKLQKDI 338
+ + L + + + R L E + ++K D +L+ E+ ++ +L++++
Sbjct: 295 NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEE-KLEELKEEL 353
Query: 339 EEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEM----VQQLSVQKLELE 394
E + E EL E+L+ R+ ELE L +V +++L + LE
Sbjct: 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413
Query: 395 DLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLA 454
D + +EI +L ++ +L+E E+E EL+EE+E + + E E L
Sbjct: 414 DRRERLQQEIEELLK-KLEEAELKELQAELE-ELEEELEELQEELERLEEALEELREELE 471
Query: 455 DRELTIVKFRELV--IREKEAALESLADR 481
+ E + + ++ + +LE L +
Sbjct: 472 EAEQALDAAERELAQLQARLDSLERLQEN 500
Score = 38.1 bits (89), Expect = 0.018
Identities = 57/382 (14%), Positives = 145/382 (37%), Gaps = 52/382 (13%)
Query: 73 AEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQ 132
E + KI E + L ++L++ ++E + +++ +L + + D E E L+
Sbjct: 687 EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746
Query: 133 VELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLR 192
+ +++ EL +IE ++ +E++ + ++ + E + L + +L+
Sbjct: 747 ERIAQLSKELTELEAEIEELEERLEEAEE-----------ELAEAEAEIEELEAQIEQLK 795
Query: 193 DLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLYDLSAHE 252
+ L +L A L L+ N + +
Sbjct: 796 E-------ELKALREALDELRA-----------ELTLLNEE--AANLRERLESLERRIAA 835
Query: 253 IFNNKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNN 312
+ ++ +LS + + + + + +
Sbjct: 836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE 895
Query: 313 KNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQ-------RVTELEAD 365
+ LR+L + S+L++++EE +++ A+L E L+ R++E +
Sbjct: 896 LEELSEELRELE----SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSL 951
Query: 366 CADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEI--VDLEALQVVSDQLQEDAKE 423
+ E ++ + +E + +++LE + +E+ V+L A++ ++L+E
Sbjct: 952 TLEEAEALENKIEDDEEEARRRLKRLE------NKIKELGPVNLAAIEEY-EELKERYDF 1004
Query: 424 IEIELKEEVEMARSATREVIRE 445
+ + KE++ A+ E I E
Sbjct: 1005 LTAQ-KEDLTEAKETLEEAIEE 1025
Score = 36.6 bits (85), Expect = 0.050
Identities = 36/178 (20%), Positives = 73/178 (41%), Gaps = 9/178 (5%)
Query: 330 EMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAAL----GAEEMVQQ 385
E+ +L+K++EE ++ + L K +L+ V +LE A L +++ EE +++
Sbjct: 713 ELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
Query: 386 LSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIRE 445
+ E E + + +I L+ + ++ + L EE R + R
Sbjct: 773 AEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERR 832
Query: 446 KEAALESLADRELTIVKFRELVIREKEAALESLADRELTIVKF-RELNSLDEKVSTEN 502
A L D E I + E + E+ + + E I + EL +L + ++
Sbjct: 833 IAATERRLEDLEEQIEELSEDI----ESLAAEIEELEELIEELESELEALLNERASLE 886
Score = 35.8 bits (83), Expect = 0.078
Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 16/184 (8%)
Query: 311 NNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLH 370
K RL +L + ++L++ + + EL + +EKL EL+ + L
Sbjct: 302 QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL----EELKEELESLE 357
Query: 371 EQVDAALGA-EEMVQQLSVQKLELEDLVSKQAE----------EIVDLEA-LQVVSDQLQ 418
+++ EE+ +L + +LE L SK A+ EI LEA L+ + D+ +
Sbjct: 358 AELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE 417
Query: 419 EDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESL 478
+EIE LK+ E + + E E LE L + + + E + E E A ++L
Sbjct: 418 RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQAL 477
Query: 479 ADRE 482
E
Sbjct: 478 DAAE 481
Score = 35.4 bits (82), Expect = 0.11
Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 7/148 (4%)
Query: 332 SKLQKDIEEKKQENAELIKSQEKLKQ---RVTELEADCADLHEQVDAALGA-EEMVQQLS 387
+L++ EE ++ AEL + +EKL++ V+ELE + +L +++ A + QQ
Sbjct: 246 EELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305
Query: 388 VQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEI---ELKEEVEMARSATREVIR 444
+ + L +L + E LE L+ D+L E+ E+E ELKEE+E + E+
Sbjct: 306 ILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEA 365
Query: 445 EKEAALESLADRELTIVKFRELVIREKE 472
E E L + E + R V + +
Sbjct: 366 ELEELESRLEELEEQLETLRSKVAQLEL 393
Score = 35.4 bits (82), Expect = 0.12
Identities = 46/221 (20%), Positives = 99/221 (44%), Gaps = 13/221 (5%)
Query: 1 MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTR 60
++ + Q L+E+L ++ + E L+E++ +LD+ AE A++ E +
Sbjct: 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEE-----------KLEE 348
Query: 61 DLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLD 120
+E++ + E +A++ E ++ L+ E+L+ + + + + A L +E +
Sbjct: 349 LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR 408
Query: 121 KEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQ 180
E E+R E LQ E++ +K+EE +++ ++A++E+ + + E + LE+
Sbjct: 409 LERLEDRRERLQQEIEELLKKLEE--AELKELQAELEELEEELEELQEELERLEEALEEL 466
Query: 181 NMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNN 221
L E L + DS R E F+
Sbjct: 467 REELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG 507
Score = 32.7 bits (75), Expect = 0.66
Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 18/149 (12%)
Query: 1 MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTR 60
+ +I+ L +++ ++ E +L+ + + E A E +
Sbjct: 850 LSEDIESLAAEIEELEELIEELESELEALLNERASLEE--------ALALLRSELEELSE 901
Query: 61 DLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQE----KQEAVEAKEDTADLVETLEM 116
+L E++ + + ++ E A L+ LE L+ ++ E T + E LE
Sbjct: 902 ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALEN 961
Query: 117 MTLDKEMAEERAETLQVELDLAKEKIEEL 145
D E R L + KI+EL
Sbjct: 962 KIEDDEEEARR------RLKRLENKIKEL 984
Score = 30.4 bits (69), Expect = 3.7
Identities = 74/347 (21%), Positives = 141/347 (40%), Gaps = 67/347 (19%)
Query: 54 RYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVET 113
RY+E +L E+++ L L LE+L++E +E E ++ + +E
Sbjct: 214 RYKELKAELRELELAL----------------LVLRLEELREELEELQEELKEAEEELEE 257
Query: 114 LEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQ 173
L T + + EE+ E L++E+ +E+IEEL ++ + +I +
Sbjct: 258 L---TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR--------------- 299
Query: 174 IKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAH 233
LEQQ LRE L L + +S+L +L+ K + +L +
Sbjct: 300 ---LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL 356
Query: 234 EIFNNNKFDSRLYDLSAHEIFNNKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEIFN 293
E E+ +++ + E+ S++ L
Sbjct: 357 EAELEEL---------EAELEELESRLE---------ELEEQLETLRSKVAQLELQIASL 398
Query: 294 NNKF---DSRLRDLSAHEIFNNKNKFDSRLRDL-SAHEKHEMSKLQKDIEEKKQENAELI 349
NN+ ++RL L + + + +L E+ E+ +LQ ++EE ++E EL
Sbjct: 399 NNEIERLEARLERLED-----RRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQ 453
Query: 350 KSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDL 396
+ E+L++ + EL + + + +DA AE + QL + LE L
Sbjct: 454 EELERLEEALEELREELEEAEQALDA---AERELAQLQARLDSLERL 497
Score = 29.6 bits (67), Expect = 6.3
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 5/128 (3%)
Query: 378 GAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARS 437
G+ + + ++ E+E+L K E + L+ L E KE+E EL+EE+E R
Sbjct: 664 GSAKTNSSILERRREIEELEEKIEELEEKIAELE---KALAELRKELE-ELEEELEQLRK 719
Query: 438 ATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELTIVKFRELNSLDEK 497
E+ R+ A + LA E + + E + + L L + + E +
Sbjct: 720 ELEELSRQISALRKDLARLEAEVEQLEERIAQL-SKELTELEAEIEELEERLEEAEEELA 778
Query: 498 VSTENIEK 505
+ IE+
Sbjct: 779 EAEAEIEE 786
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 42.7 bits (101), Expect = 2e-04
Identities = 25/101 (24%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 320 LRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGA 379
R+ + E+++LQ+++ E +++ AEL + ++LKQ ++ LEA+ L +++
Sbjct: 64 ARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQL 123
Query: 380 EEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQED 420
+L + EL + +++ +E LEA +++LQE+
Sbjct: 124 SANAIELDEENRELREELAELKQENEALEA---ENERLQEN 161
Score = 35.8 bits (83), Expect = 0.032
Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 12/121 (9%)
Query: 23 TRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMES 82
+R L + ++ E + ++ E Q E L E++ + + + + +
Sbjct: 55 SRYLSDTPSARERLPELQQELAELQE-----ELAELQEQLAELQQENQELKQELSTLEAE 109
Query: 83 QAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKI 142
L++EL ++KQ A+E E+ +L E L ++ E L+ E + +E
Sbjct: 110 LERLQKELARIKQLSANAIELDEENRELREEL-------AELKQENEALEAENERLQENE 162
Query: 143 E 143
+
Sbjct: 163 Q 163
Score = 32.7 bits (75), Expect = 0.38
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 59 TRDLDEMKIQLDQSAEFKAKIMESQ---AGLKRELEKLKQEKQEAVEAKEDTADLVETL- 114
+R L + ++ E + ++ E Q A L+ +L +L+QE QE + +E L
Sbjct: 55 SRYLSDTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQ 114
Query: 115 -EMMTLDKEMA-----EERAETLQVELDLAKEKIEELTLDIELMKADIEK 158
E+ + + A +E L+ EL K++ E L + E ++ + ++
Sbjct: 115 KELARIKQLSANAIELDEENRELREELAELKQENEALEAENERLQENEQR 164
Score = 30.4 bits (69), Expect = 1.8
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVD 374
E + +L + E +EN EL + +LKQ LEA+ L E
Sbjct: 114 QKELARIKQLSANAIELDEENRELREELAELKQENEALEAENERLQENEQ 163
Score = 29.6 bits (67), Expect = 3.7
Identities = 24/115 (20%), Positives = 50/115 (43%), Gaps = 18/115 (15%)
Query: 86 LKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEEL 145
L++EL +L++E E +E A+L + + + + E E LQ EL +I++L
Sbjct: 71 LQQELAELQEELAEL---QEQLAELQQENQELKQELSTLEAELERLQKEL----ARIKQL 123
Query: 146 TLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSAHEIF 200
+ + + + + ++ +L+Q+N L RL++ F
Sbjct: 124 SANAIELDEENREL-----------REELAELKQENEALEAENERLQENEQRRWF 167
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 43.2 bits (103), Expect = 4e-04
Identities = 45/151 (29%), Positives = 80/151 (52%), Gaps = 27/151 (17%)
Query: 308 EIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCA 367
EI +N+F+ LR+ ++E+ KL+K + +K++ L + E L++R ELE
Sbjct: 65 EIHKLRNEFEKELRE----RRNELQKLEKRLLQKEEN---LDRKLELLEKREEELEKKEK 117
Query: 368 DLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIE 427
+L E+ Q+L ++ ELE+L+ +Q L+ L+ +S E+AKEI +E
Sbjct: 118 EL----------EQKQQELEKKEEELEELIEEQ------LQELERISGLTAEEAKEILLE 161
Query: 428 -LKEEVEMARSATREVIREKEAALESLADRE 457
++EE AR +I+E E + AD++
Sbjct: 162 KVEEE---ARHEAAVLIKEIEEEAKEEADKK 189
Score = 32.8 bits (76), Expect = 0.64
Identities = 30/146 (20%), Positives = 63/146 (43%), Gaps = 29/146 (19%)
Query: 2 KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRD 61
K EI L+ + + + RE+ +L +++ +L Q E K
Sbjct: 63 KEEIHKLRNEFEK---ELRERRNELQKLEKRLLQKEE---------------NLDRKLEL 104
Query: 62 LDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVE------AKEDTADLVETLE 115
L++ + +L++ + + + + ELE+L +E+ + +E A+E L+E +E
Sbjct: 105 LEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVE 164
Query: 116 MMTLDKEMAEERAETLQVELDLAKEK 141
+E E A ++ + AKE+
Sbjct: 165 -----EEARHEAAVLIKEIEEEAKEE 185
Score = 32.1 bits (74), Expect = 0.91
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 73 AEFKAKIMESQAGLKRELEKLKQE-KQEAVEAKEDTADLVETLEM--MTLDKEMAEERAE 129
AE K +A K E+ KL+ E ++E E + + L + L LD+++ E E
Sbjct: 51 AEAIKKEALLEA--KEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKL--ELLE 106
Query: 130 TLQVELDLAKEKIEELTLDIELMKADIEK 158
+ EL+ ++++E+ ++E + ++E+
Sbjct: 107 KREEELEKKEKELEQKQQELEKKEEELEE 135
Score = 31.3 bits (72), Expect = 1.6
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 31/122 (25%)
Query: 328 KHEMSKLQKDIE-EKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQL 386
K E+ KL+ + E E ++ EL K +++L Q+ EE + +
Sbjct: 63 KEEIHKLRNEFEKELRERRNELQKLEKRLLQK---------------------EENLDR- 100
Query: 387 SVQKLELEDLVSKQAE---EIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVI 443
+LE L ++ E + +LE Q ++ +E+ +E+ E +E+E T E
Sbjct: 101 -----KLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEA 155
Query: 444 RE 445
+E
Sbjct: 156 KE 157
Score = 30.9 bits (71), Expect = 2.4
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 271 EIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIF--NNKNKFDSRLRDLSAHEK 328
EI +N+F+ LR+ N+ + L E + R +L EK
Sbjct: 65 EIHKLRNEFEKELRE-------RRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEK 117
Query: 329 HEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEAD 365
E+ + Q+++E+K++E ELI+ Q + +R++ L A+
Sbjct: 118 -ELEQKQQELEKKEEELEELIEEQLQELERISGLTAE 153
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 42.2 bits (100), Expect = 0.001
Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 11/114 (9%)
Query: 82 SQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDK-EMAEERAETLQVELDLAKE 140
++A ++ +L+ L ++K E K DL +TL + LDK + +E E L+ +L A
Sbjct: 37 TEADVQAQLDALNKQKLLEAEDKLVQQDLEQTLAL--LDKIDRQKEETEQLKQQLAQAPA 94
Query: 141 KIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDL 194
K+ + ++E +K D ++ +S ++QLE RL +TL +L++
Sbjct: 95 KLRQAQAELEALKDDNDEE-----TRETLSTLSLRQLES---RLAQTLDQLQNA 140
Score = 29.5 bits (67), Expect = 7.7
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 336 KDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELED 395
I+ +K+E +L + + ++ + +A+ L + D + LS L L
Sbjct: 73 DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETR-----ETLS--TLSLRQ 125
Query: 396 LVSKQAEEIVDLEALQ 411
L S+ A+ + L+ Q
Sbjct: 126 LESRLAQTLDQLQNAQ 141
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 42.1 bits (99), Expect = 0.001
Identities = 86/504 (17%), Positives = 178/504 (35%), Gaps = 46/504 (9%)
Query: 2 KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRD 61
+A + L E + + K R L+ ++L+ + ++ + L EK
Sbjct: 235 EALEERLAELEEEKERLEELKARLLEIESLELEALKIREEEL--RELERLLEELEEKIER 292
Query: 62 LDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDK 121
L+E++ ++++ E + L+ LEKLK ++ + +E L LE + +K
Sbjct: 293 LEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEK 352
Query: 122 EMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQN 181
+ E EL+ E++E+ +E + +++
Sbjct: 353 NELAKLLEERLKELEERLEELEKELEKALERLKQLE-----------------EAIQELK 395
Query: 182 MRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKF 241
L E L ++ + + R+L +
Sbjct: 396 EELAELSAALEEIQEELEELEKELEELERELE--------------ELEEEIKKLEEQIN 441
Query: 242 DSRLYDLSAHEIFNNKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDSRL 301
+L E+ K ++L ++ L +L E + K ++ L
Sbjct: 442 QLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELE--EELSREKEEAEL 499
Query: 302 RDLSAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLK-QRVT 360
R+ E+ + + L +L E+ +L++ +E+ + EL + +EKL+ Q++
Sbjct: 500 REEIE-ELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLK 558
Query: 361 ELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQED 420
E D +++ L L +K ELE+L + E L+ L+ QL+E
Sbjct: 559 EELRQLEDRLQELKELLEELR---LLRTRKEELEELRERLKELKKKLKELEERLSQLEEL 615
Query: 421 AKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELV---IREKEAALES 477
+ +E+ E E + + L A+ E + E + + E EA +
Sbjct: 616 LQSLELSEAEN---ELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRR 672
Query: 478 LADRELTIVKFRELNSLDEKVSTE 501
R + E E++ E
Sbjct: 673 ELQRIENEEQLEEKLEELEQLEEE 696
Score = 36.7 bits (85), Expect = 0.040
Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 8/198 (4%)
Query: 308 EIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCA 367
E + +RL ++ + E + ++++ E ++ EL + E+L++ E+E
Sbjct: 246 EEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEE 305
Query: 368 DLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIE 427
+L EE++++L + LE L K LE L+ ++L E+ E+
Sbjct: 306 ELEGLRALLEELEELLEKLKSLEERLEKLEEK-------LEKLESELEELAEEKNELAKL 358
Query: 428 LKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELTIVK 487
L+E ++ E+ +E E ALE L E I + +E + E AALE + + + K
Sbjct: 359 LEERLKELEERLEELEKELEKALERLKQLEEAIQELKEE-LAELSAALEEIQEELEELEK 417
Query: 488 FRELNSLDEKVSTENIEK 505
E + + E I+K
Sbjct: 418 ELEELERELEELEEEIKK 435
Score = 35.9 bits (83), Expect = 0.068
Identities = 91/476 (19%), Positives = 192/476 (40%), Gaps = 29/476 (6%)
Query: 36 SAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQ 95
A+ K + +E Q + L + L+E +L + E + + E + L++E+E L++
Sbjct: 182 EAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEE--LEQEIEALEE 239
Query: 96 EKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKAD 155
E E KE +L L E L + +E++ EL +E ++
Sbjct: 240 RLAELEEEKERLEELKARLL----------EIESLELEALKIREEELRELERLLEELEEK 289
Query: 156 IEKSCDGAGDGTE--VSHYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLS 213
IE+ + + E ++ L ++ L E L L + K +S L +L+
Sbjct: 290 IERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELA 349
Query: 214 AHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLYDLSAH----EIFNNKNKFDSRLRDLSA 269
+ + RL++L + + L L + + S +
Sbjct: 350 EEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQ 409
Query: 270 HEIFNNKNKFDSRLRDLS----AHEIFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSA 325
E+ + + + R+L + ++L E+ K ++L
Sbjct: 410 EELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPE 469
Query: 326 HEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQ 385
+ E+ +L + E+ +E K + +L++ + ELE + +L E++ L EE +++
Sbjct: 470 EHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKE 529
Query: 386 LSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIRE 445
+KLE + + ++ EE+ ++ QL+E+ +++E L+E E ++R
Sbjct: 530 ELEEKLEKLENLLEELEELK----EKLQLQQLKEELRQLEDRLQELKE--LLEELRLLRT 583
Query: 446 KEAALESLADRELTIVKFRELVIREKEAALESLADRELTIVKFRELNSLDEKVSTE 501
++ LE L +R + K + + E+ + LE L EL +E++ +E
Sbjct: 584 RKEELEELRERLKELKKKLKE-LEERLSQLEELLQSLELSEAENELEEAEEELESE 638
Score = 35.9 bits (83), Expect = 0.072
Identities = 85/449 (18%), Positives = 165/449 (36%), Gaps = 28/449 (6%)
Query: 79 IMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLA 138
+ Q L+ +E++E ++ + E++ + A+ + E L+ +L
Sbjct: 138 VYLPQGEFDAFLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSEL 197
Query: 139 KEKIEELTLDIELM-KADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSAH 197
E IE+L +E K + E +I+ LE++ L E RL +L A
Sbjct: 198 LEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKA- 256
Query: 198 EIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDLS------AHEIFNNNKFDSRLYDL--S 249
+ + + E+ + L + EI + L L
Sbjct: 257 RLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEE 316
Query: 250 AHEIFNNKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEI 309
E+ + RL L K +S L +L+ + K +
Sbjct: 317 LEELLEKLKSLEERLEKLE-----EKLEKLESELEELAEEKN-ELAKLLEERLKELEERL 370
Query: 310 FNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADL 369
+ + + L L E+ + +L++++ E E+ + E+L++ + ELE + +L
Sbjct: 371 EELEKELEKALERLKQLEE-AIQELKEELAELSAALEEIQEELEELEKELEELERELEEL 429
Query: 370 HEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIV-----DLEALQVVSDQLQEDAKEI 424
E++ EE + QL ++L + +L + V E + + + + + +E+
Sbjct: 430 EEEIKK---LEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEEL 486
Query: 425 EIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADR-EL 483
E EL E E A RE I E E L L + + +++ E + E E LE L + E
Sbjct: 487 EEELSREKEEAE--LREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEE 544
Query: 484 TIVKFRELNSLDEKVSTENIEKCVTYFNT 512
+L K +E +
Sbjct: 545 LEELKEKLQLQQLKEELRQLEDRLQELKE 573
Score = 35.5 bits (82), Expect = 0.10
Identities = 97/511 (18%), Positives = 211/511 (41%), Gaps = 42/511 (8%)
Query: 4 EIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKI--MESQAASSLFRYREKTRD 61
E+++ E+L+ ++ + E +L+ ++ L++ E K+ +E + + + +
Sbjct: 285 ELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESE 344
Query: 62 LDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAV--------EAKEDTADLVET 113
L+E+ + ++ A+ + ++ ELEK ++ E + E KE+ A+L
Sbjct: 345 LEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAA 404
Query: 114 LEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVS--- 170
LE + + E E+ E L+ EL+ +E+I++L I +++ + AG G +
Sbjct: 405 LEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCG 464
Query: 171 -----HYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNN--KFDSRLRDLSAHEIFNNNKF 223
++ + LE + L E L + + LR+L I
Sbjct: 465 QELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELE 524
Query: 224 DSRLRDLSAHEIFNNNKFDSRLYDLSAHEIFNNKNKFDSRLRDLSAHEIFNNKNKFDSRL 283
++ +L K ++ L +L + + LR L + + RL
Sbjct: 525 EALKEELEE----KLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRL 580
Query: 284 RDLSAHEIFNNNKFDSRLRDLSAH--EIFNNKNKFDSRLRDLSAHEKH-EMSKLQKDIEE 340
E+ + RL++L E+ ++ + L+ L E E+ + ++++E
Sbjct: 581 LRTRKEEL---EELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELES 637
Query: 341 KKQENAE-------LIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLEL 393
+ ++ L + E+L+++V ELEA+ ++++ EE +++L + EL
Sbjct: 638 ELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEEL 697
Query: 394 EDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESL 453
E L + E + L ++ + ++L+ E+E KE ++ + + E E L
Sbjct: 698 EQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLE-----KALELLEELREKL 752
Query: 454 ADRELTIVKFRELVIREKEAALESLADRELT 484
L R L+ + + A E L+ L
Sbjct: 753 GKAGLRADILRNLLAQIEAEANEILSKLSLN 783
Score = 30.5 bits (69), Expect = 3.0
Identities = 29/142 (20%), Positives = 66/142 (46%), Gaps = 4/142 (2%)
Query: 1 MKAEIQDLKEKLDTMKIKYREKTR--DLDEMKIQLDQSAEFKAKIMESQAASSLFRYREK 58
+++++L + L+ + + + +L+ +L+ AE + A L E+
Sbjct: 608 RLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEEL--LQAALEELEEKVEE 665
Query: 59 TRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMT 118
++Q ++ E + +E L+ ELE+L++E +E ++ + L+E LE
Sbjct: 666 LEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRK 725
Query: 119 LDKEMAEERAETLQVELDLAKE 140
+ E ++ E L+ L+L +E
Sbjct: 726 AELEELKKELEKLEKALELLEE 747
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 41.2 bits (97), Expect = 0.002
Identities = 42/203 (20%), Positives = 87/203 (42%), Gaps = 20/203 (9%)
Query: 318 SRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDA-- 375
+L K + +L++D+ +QE + ++L+ R+ ELE D L E ++
Sbjct: 726 EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLE 785
Query: 376 ALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEA-------LQVVSDQLQEDAKEIEIEL 428
A + + ++ + +LE+ VS+ + ++E + ++ ++ +E I+L
Sbjct: 786 ARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL 845
Query: 429 KEEVEMARS----------ATREVIREKEAALESLADRELTIVKFRELVIREKEAALESL 478
KE+++ E + E EAAL L R + K R+ + + +
Sbjct: 846 KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKI 905
Query: 479 ADRELTIVKFRE-LNSLDEKVST 500
+ E I K R+ L+ L K+
Sbjct: 906 EELEAQIEKKRKRLSELKAKLEA 928
Score = 38.5 bits (90), Expect = 0.011
Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 13/184 (7%)
Query: 318 SRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAAL 377
R+ + E+S + I E ++E +L + +EKLK+R+ ELE D + L ++++
Sbjct: 698 RRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV- 756
Query: 378 GAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARS 437
+ +++L + ELE+ + K E + DLEA EI+ EL ++E S
Sbjct: 757 --KSELKELEARIEELEEDLHKLEEALNDLEA-----RLSHSRIPEIQAEL-SKLEEEVS 808
Query: 438 ATREVIREKEAALESL-ADRELTIVKFRELV--IREKEAALESLADR-ELTIVKFRELNS 493
+RE E L L ++E + +EL + + ++S+ E K EL
Sbjct: 809 RIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEE 868
Query: 494 LDEK 497
E+
Sbjct: 869 ELEE 872
Score = 38.5 bits (90), Expect = 0.011
Identities = 36/157 (22%), Positives = 77/157 (49%), Gaps = 15/157 (9%)
Query: 3 AEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDL 62
EI+ L+++ + +K + E DL ++ ++ K+++ E +A R E DL
Sbjct: 723 KEIEQLEQEEEKLKERLEELEEDLSSLEQEI---ENVKSELKELEA-----RIEELEEDL 774
Query: 63 DEMKIQLDQSAEFKAKIMESQ-AGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDK 121
+++ L + +A++ S+ ++ EL KL++E ++ + L +TL+K
Sbjct: 775 HKLEEAL---NDLEARLSHSRIPEIQAELSKLEEEVSRIEAR---LREIEQKLNRLTLEK 828
Query: 122 EMAEERAETLQVELDLAKEKIEELTLDIELMKADIEK 158
E E+ + LQ + KE+I+ + +IE + E+
Sbjct: 829 EYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEE 865
Score = 37.7 bits (88), Expect = 0.020
Identities = 75/380 (19%), Positives = 151/380 (39%), Gaps = 60/380 (15%)
Query: 85 GLKRELEKLKQE----KQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKE 140
GLKREL L+ E + E ++ +D + + + E E+ E L+ L+ +E
Sbjct: 685 GLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEE 744
Query: 141 KIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSAHEIF 200
+ L +IE +K+++++ +I++LE+ +L E L L +H
Sbjct: 745 DLSSLEQEIENVKSELKEL-----------EARIEELEEDLHKLEEALNDLEARLSHSRI 793
Query: 201 NN-----NKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLYDLSAHEIFN 255
+K + + + A K + + E + R+ ++
Sbjct: 794 PEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRI------DLKE 847
Query: 256 NKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNKNK 315
+ + +L+ K + + L +L A LRDL
Sbjct: 848 QIKSIEKEIENLNG-----KKEELEEELEELEA-----------ALRDL----------- 880
Query: 316 FDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDA 375
+SRL DL E +L+ + E +++ EL EK ++R++EL+A L E++
Sbjct: 881 -ESRLGDLKK----ERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSE 935
Query: 376 ALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVE-- 433
+ +++ ++L LED+ ++ ++ AL+ V+ ++ +E+ L E E
Sbjct: 936 IEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKR 995
Query: 434 MARSATREVIREKEAALESL 453
R+ I E+ E
Sbjct: 996 AKLEEERKAILERIEEYEKK 1015
Score = 37.4 bits (87), Expect = 0.029
Identities = 61/368 (16%), Positives = 149/368 (40%), Gaps = 43/368 (11%)
Query: 2 KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRD 61
E+++++E ++ + + EK + L+ ++ + +++ ++A + E + + E ++
Sbjct: 176 LEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKRE----YEGYELLKE 231
Query: 62 LDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETL---EMMT 118
+ ++ Q + A + E L E+ +L++ +E + E+ ++ L E +
Sbjct: 232 KEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLR 291
Query: 119 LDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQI-KQL 177
+ +++ E AE +E +A+++ E + L K + E D ++ +++
Sbjct: 292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEI------DKLLAEIEELEREI 345
Query: 178 EQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDLSA--HEI 235
E++ R + +L + L ++ ++ L EI
Sbjct: 346 EEERKRRDKLTEEYAELKEEL----EDLRAELEEVDKEFAETRDELKDYREKLEKLKREI 401
Query: 236 FNNNKFDSRLYDLSAHEIFNNKNKFDSRLRDLSAH--EIFNNKNKFDSRLRDLSAHEIFN 293
+ RL + + L DL+A I N+ + D + EI
Sbjct: 402 NELKRELDRLQEE--------LQRLSEELADLNAAIAGIEAKINELEEEKEDKAL-EI-- 450
Query: 294 NNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQE 353
K + +L L+A + +K++ L DL E +++K++ + ++E AE
Sbjct: 451 -KKQEWKLEQLAA-----DLSKYEQELYDLKE----EYDRVEKELSKLQRELAEAEAQAR 500
Query: 354 KLKQRVTE 361
++RV
Sbjct: 501 ASEERVRG 508
Score = 35.8 bits (83), Expect = 0.072
Identities = 34/168 (20%), Positives = 81/168 (48%), Gaps = 14/168 (8%)
Query: 2 KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQS----AEFKAKIMESQAASSLFRYRE 57
K +++L+E L +++ + +L E++ ++++ + + + + +A S R E
Sbjct: 736 KERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPE 795
Query: 58 KTRDLDEMKIQLDQSAEFKAKIMESQAGLKRE------LEKLKQEKQEAV-EAKEDTADL 110
+L +++ ++ + +A++ E + L R LEK QE QE + KE +
Sbjct: 796 IQAELSKLE---EEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSI 852
Query: 111 VETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEK 158
+ +E + KE EE E L+ L + ++ +L + + ++A + +
Sbjct: 853 EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRE 900
Score = 35.8 bits (83), Expect = 0.086
Identities = 32/174 (18%), Positives = 76/174 (43%), Gaps = 19/174 (10%)
Query: 1 MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTR 60
+ E +LKE+L+ ++ + E ++ E + +L E + + R
Sbjct: 355 LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE---------------KLEKLKR 399
Query: 61 DLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLE--MMT 118
+++E+K +LD+ E ++ E A L + ++ + E E KED A ++ E +
Sbjct: 400 EINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ 459
Query: 119 LDKEMAEERAETLQVELDLAK--EKIEELTLDIELMKADIEKSCDGAGDGTEVS 170
L ++++ E ++ + + +++ +L ++ +A S + G V
Sbjct: 460 LAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVE 513
Score = 34.3 bits (79), Expect = 0.22
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 13/137 (9%)
Query: 330 EMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQ 389
E+ ++ +E+ K+E EL + ++L++ + L + ADL+ + G E + +L +
Sbjct: 386 ELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIA---GIEAKINELEEE 442
Query: 390 KLELEDLVSKQAEEI----VDLEALQVVSDQLQEDAKEIEIELKE------EVEMARSAT 439
K + + KQ ++ DL + L+E+ +E EL + E E A+
Sbjct: 443 KEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARAS 502
Query: 440 REVIREKEAALESLADR 456
E +R A E L
Sbjct: 503 EERVRGGRAVEEVLKAS 519
>gnl|CDD|234084 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant
protein, PEP-CTERM locus subfamily. Members of this
protein family belong to the family of polysaccharide
chain length determinant proteins (pfam02706). All are
found in species that encode the PEP-CTERM/exosortase
system predicted to act in protein sorting in a number
of Gram-negative bacteria, and are found near the epsH
homolog that is the putative exosortase gene [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 498
Score = 40.8 bits (96), Expect = 0.002
Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 13/148 (8%)
Query: 3 AEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDL 62
+EI + +E+L+ +++ E D +K QL E + S A+S R +
Sbjct: 204 SEISEAQEELEAARLELNEAIAQRDALKRQL--GGEEPVLLAGSSVANSELDGR-----I 256
Query: 63 DEMKIQLDQ-SAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVET----LEMM 117
+ ++ QLD + K + A KRE+ +L+++K+E AK + E + +
Sbjct: 257 EALEKQLDALRLRYTDKHPDVIA-TKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQL 315
Query: 118 TLDKEMAEERAETLQVELDLAKEKIEEL 145
++ AE +L+ + +IE L
Sbjct: 316 QIELAEAEAEIASLEARVAELTARIERL 343
Score = 34.3 bits (79), Expect = 0.20
Identities = 27/137 (19%), Positives = 58/137 (42%), Gaps = 15/137 (10%)
Query: 4 EIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLD 63
I+ L+++LD ++++Y +K D+ K ++ Q E K + ++ R
Sbjct: 255 RIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPE-RGEIANPVYQ 313
Query: 64 EMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQE--AVEA------------KEDTAD 109
+++I+L ++ A + A L +E+L+ + VEA K +
Sbjct: 314 QLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQ 373
Query: 110 LVETLEMMTLDKEMAEE 126
L+ E + K+M +
Sbjct: 374 LLTRRESAEVSKQMEVQ 390
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 41.1 bits (97), Expect = 0.002
Identities = 51/248 (20%), Positives = 97/248 (39%), Gaps = 30/248 (12%)
Query: 2 KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKI---MESQAASSLFRYREK 58
+A+ Q+ E+L +++ +K Q +Q+ + KI + A + R E
Sbjct: 448 QAKEQEATEELLSLE----QKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVAR--EL 501
Query: 59 TRDLDEMKIQLDQSAEFKAKI--MESQAGLKRELEKLKQEKQEAVEAKEDTADLVETL-- 114
R L E + +Q + + ++ +E + ++ E+L E + + D D +E L
Sbjct: 502 LRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQE 561
Query: 115 ------EMMTLDKEMAEERAETLQVELDLAKEKIEELT-LDIELMKAD--IEKSCDGAGD 165
E ++ A ER L+ +L+ + +I+ L + A + + + +G+
Sbjct: 562 ELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGE 621
Query: 166 GTEVSHYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDS 225
E S + ++Q R RE L RD A D + LS D
Sbjct: 622 EFEDSQDVTEYMQQLLERERE-LTVERDELAARKQ---ALDEEIERLSQPG----GSEDP 673
Query: 226 RLRDLSAH 233
RL L+
Sbjct: 674 RLNALAER 681
Score = 31.5 bits (72), Expect = 1.7
Identities = 20/100 (20%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 6 QDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEM 65
LK D + +E ++L ++ + D AE +A+ + + L R + L E
Sbjct: 1023 ASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQL-EK 1081
Query: 66 KIQLDQSAEFKAKIMESQAGLKRELEK-LKQEKQEAVEAK 104
++ ++ M++ R+LE+ + +++ V AK
Sbjct: 1082 QLTFCEAE------MDNLTKKLRKLERDYHEMREQVVNAK 1115
Score = 29.9 bits (68), Expect = 5.7
Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 15/140 (10%)
Query: 348 LIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKL---ELEDLVSKQAEEI 404
L + ++L+ R++ELE L +Q A E ++L ELE L + +
Sbjct: 511 LAEQLQQLRMRLSELEQR---LRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARL 567
Query: 405 VDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAAL--------ESLADR 456
L + + + ++ +L+ ++ A + AL E D
Sbjct: 568 ESLSESVSEARERRMALRQQLEQLQARIQRLA-ARAPAWLAAQDALARLREQSGEEFEDS 626
Query: 457 ELTIVKFRELVIREKEAALE 476
+ ++L+ RE+E +E
Sbjct: 627 QDVTEYMQQLLERERELTVE 646
>gnl|CDD|220404 pfam09789, DUF2353, Uncharacterized coiled-coil protein (DUF2353).
Members of this family of uncharacterized proteins have
no known function.
Length = 319
Score = 40.2 bits (94), Expect = 0.002
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 322 DLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEE 381
D+ + L + +E+ ++EN +L ++L+QR EL+ D L Q A E
Sbjct: 58 DMKIKPGTKRQDLSQLLEKYREENQQLSTDVQELRQRKAELQGDI-KLLRQTIAQQRVEF 116
Query: 382 MVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATRE 441
M + E DLVS+ LE L+ QL+ D + + E KEEV M R +
Sbjct: 117 MGGGVRESFEERNDLVSQ-------LEKLREKCKQLESDLRSLLDE-KEEVLMERDEYQR 168
Score = 30.2 bits (68), Expect = 3.2
Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 328 KHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLH-EQVDAALGAEEMVQQL 386
+ + + + E +E +L+ EKL+++ +LE+D L E+ + + +E ++
Sbjct: 111 QQRVEFMGGGVRESFEERNDLVSQLEKLREKCKQLESDLRSLLDEKEEVLMERDEYQRKA 170
Query: 387 SVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSA 438
EL L+ +VD++AL + + L+E L+EE E+ +
Sbjct: 171 HRLNNELSYLLGGDPRRVVDVDALVMENRYLKEKIN----TLEEESELIKMT 218
>gnl|CDD|221584 pfam12455, Dynactin, Dynein associated protein. This domain family
is found in eukaryotes, and is approximately 280 amino
acids in length. The family is found in association with
pfam01302. There is a single completely conserved
residue E that may be functionally important. Dynactin
has been associated with Dynein, a kinesin protein which
is involved in organelle transport, mitotic spindle
assembly and chromosome segregation. Dynactin anchors
Dynein to specific subcellular structures.
Length = 274
Score = 39.6 bits (93), Expect = 0.003
Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 492 NSLDEKVSTENIEKCVTYFNTFYPVLFPDTKFSHVGHLLMDYVKILSTASDCLQTDSKII 551
+ LDE + +++ + YF+ P L+D + + A D + ++ +
Sbjct: 177 DELDENECADELQRSIAYFDHLAETHLPGELEDC-ADELLDRLNLTQAALDSVASNLSRL 235
Query: 552 QALIQETMMPCE 563
+ L+Q
Sbjct: 236 KTLLQSGHAETS 247
Score = 38.1 bits (89), Expect = 0.010
Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 574 NEIGREGSTENIEKCVTYFNTFYPVLFPGHPSFSSCGSLLMDYVKILSTACDCLQTDSKI 633
+E+ + +++ + YF+ PG C L+D + + A D + ++
Sbjct: 177 DELDENECADELQRSIAYFDHLAETHLPGEL--EDCADELLDRLNLTQAALDSVASNLSR 234
Query: 634 IQALIQ 639
++ L+Q
Sbjct: 235 LKTLLQ 240
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 39.1 bits (92), Expect = 0.007
Identities = 62/266 (23%), Positives = 108/266 (40%), Gaps = 25/266 (9%)
Query: 256 NKNKFDSRLRDLSAHEIFN-NKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHE---IFN 311
K++ L +L I + + + RLR L + + D +LR
Sbjct: 17 YKDEVLEALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALD-KLRSYLPKLNPLREE 75
Query: 312 NKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELE------AD 365
K L +L + E+ K++K+I+E ++E +EL ++L+Q + LE D
Sbjct: 76 KKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLD 135
Query: 366 CADLHEQ--VDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKE 423
+ L V +G +L KLE + + + VV L+E + E
Sbjct: 136 LSLLLGFKYVSVFVGTVP-EDKLEELKLESDVENVEYISTDKGYVYVVVV--VLKELSDE 192
Query: 424 IEIELK----EEVEMARSAT-REVIREKEAALESL-ADRELTIVKFRELVIREKEAALES 477
+E ELK E +E+ T E+IRE + LE + +RE + + +EL +K
Sbjct: 193 VEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKEL--AKKYLEELL 250
Query: 478 LADRELTIVKFRELNSLDEKVSTENI 503
L I R +L + + T+
Sbjct: 251 ALYEYLEIELERA-EALSKFLKTDKT 275
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 38.1 bits (89), Expect = 0.010
Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 17/170 (10%)
Query: 83 QAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAE------ERAETLQVELD 136
A L E E+LKQ+ +EA+E + + + E R L+ E++
Sbjct: 29 LARLLLENEELKQKVEEALEGATNEDGKLAADLLKLEVARKKERLNQIRARISQLKEEIE 88
Query: 137 LAKEKIEELTLDIELMKADIEKSCDGAGD--GTEVSHYQ--IKQLEQQNMRLRETLVRLR 192
+E+IEEL + ++D+ + +++ Q IK+ + L L R
Sbjct: 89 QKRERIEELKRALAQRRSDLSSASYQLEKRRASQLEKLQDEIKRTRSKLNALHSLLAEKR 148
Query: 193 DL---SAHEIFN---NNKFDSRLRDLSAHEIFNNNKFDSR-LRDLSAHEI 235
++F + + I D R L L I
Sbjct: 149 SFLCRELAKLFPLRRVIRGRKGDSSSEPYTIGGVPLVDLRDLNSLPPEVI 198
Score = 30.4 bits (69), Expect = 2.7
Identities = 34/163 (20%), Positives = 62/163 (38%), Gaps = 24/163 (14%)
Query: 334 LQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLEL 393
+ + E + + A L+ E+LKQ+V E + KL
Sbjct: 18 ARNSLYELRLDLARLLLENEELKQKVEEALEGATNED------------------GKLAA 59
Query: 394 EDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESL 453
+ L + A + L ++ QL+E EIE + +E +E + A + + +A L
Sbjct: 60 DLLKLEVARKKERLNQIRARISQLKE---EIE-QKRERIEELKRALAQRRSDLSSASYQL 115
Query: 454 ADRELTIVKFRELVIREKEAALESLADR--ELTIVKFRELNSL 494
R + ++ + I+ + L +L E REL L
Sbjct: 116 EKRRASQLEKLQDEIKRTRSKLNALHSLLAEKRSFLCRELAKL 158
>gnl|CDD|234342 TIGR03752, conj_TIGR03752, integrating conjugative element protein,
PFL_4705 family. Members of this protein family are
found occasionally on plasmids such as the Pseudomonas
putida toluene catabolic TOL plasmid pWWO_p085. Usually,
however, they are found on the bacterial main chromosome
in regions flanked by markers of conjugative transfer
and/or transposition [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 472
Score = 38.5 bits (90), Expect = 0.011
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 16/86 (18%)
Query: 320 LRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGA 379
LR L A E+ +L+K + + EN L E+L++R + +Q+ A+ +
Sbjct: 61 LRTLVA----EVKELRKRLAKLISENEALKAENERLQKREQ-------SIDQQIQQAVQS 109
Query: 380 E-----EMVQQLSVQKLELEDLVSKQ 400
E + ++QL ++ +L+ L+ +
Sbjct: 110 ETQELTKEIEQLKSERQQLQGLIDQL 135
Score = 31.9 bits (73), Expect = 0.97
Identities = 14/84 (16%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 323 LSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRV-TELEADCADLHEQVDAA----L 377
+ K ++KL + E K EN L K ++ + Q++ ++++ +L ++++
Sbjct: 68 VKELRK-RLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQ 126
Query: 378 GAEEMVQQLSVQKLELEDLVSKQA 401
+ ++ QL + L +++ +
Sbjct: 127 QLQGLIDQLQRR---LAGVLTGPS 147
>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form. The
Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC
2.A.36) The CPA1 family is a large family of proteins
derived from Gram-positive and Gram-negative bacteria,
blue green bacteria, yeast, plants and animals.
Transporters from eukaryotes have been functionally
characterized, and all of these catalyze Na+:H+
exchange. Their primary physiological functions may be
in (1) cytoplasmic pH regulation, extruding the H+
generated during metabolism, and (2) salt tolerance (in
plants), due to Na+ uptake into vacuoles. This model is
specific for the bacterial members of this family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 525
Score = 37.6 bits (87), Expect = 0.019
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 392 ELEDLVSKQAEEIVDLEALQVVSDQL--QED-AKEIEIELKEEVEMARSATREVIREKEA 448
ELE+++++ AL +QL E A+E+ EL +E R+ E IR
Sbjct: 416 ELEEIIARYIAARSAKFALMKAVEQLRIVEPVARELLPELDARIEELRADGEEKIR---- 471
Query: 449 ALESLADRELTIVKFRELVIREKEAALESL-ADRELTIVKFREL 491
+ ++ L + R V+ K +A+ L A ++ EL
Sbjct: 472 --SGMGEKNL-RRRARLYVLDAKRSAVVDLRAGGLISQEVLLEL 512
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 37.8 bits (88), Expect = 0.022
Identities = 42/193 (21%), Positives = 75/193 (38%), Gaps = 21/193 (10%)
Query: 313 KNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQ 372
+ ++ L + + + +E Q E +++ + L+QR+ +E D A E+
Sbjct: 714 QEQWYDALLEAGLGGRASPAGALDALE-LLQNIKEKLQAADDLRQRIAAMERDLARFEEE 772
Query: 373 VDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEI--ELKE 430
V+A A +++ A+E AL+ + ++ A E E E
Sbjct: 773 VEALAEAVAP------------EMLGTPADETA--RALKQRLKRARDTAAAAEKLAEEIE 818
Query: 431 EVEMARSATREVIREKEAALESLAD--RELTIVKFRELVIR--EKEAALESLADRELTIV 486
E E S + E EA L +L R TI + V R + +A E T+V
Sbjct: 819 EAEKEVSEAAAALDEAEARLTALLRAARCTTIEELLAAVERSDTYRELRKRIAALERTLV 878
Query: 487 KFRELNSLDEKVS 499
+ SL+ V+
Sbjct: 879 RAGGGLSLEALVA 891
Score = 30.9 bits (70), Expect = 2.9
Identities = 75/489 (15%), Positives = 159/489 (32%), Gaps = 74/489 (15%)
Query: 20 REKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKI 79
R++ R L++ K +L++ + E +A ++ L E+ + E +
Sbjct: 194 RKELRQLEKEKQRLERLRRLLPLLAERKA------LEQQLAALGEVIDLPPDAVERYEEA 247
Query: 80 MESQAGLKRELEKLKQEKQEAVEAKEDT----------ADLVETLEMMTLDKEMAEERAE 129
+R LE L E+ EA++A+ D A +E L + AE+
Sbjct: 248 RAELRAARRNLELL-TERLEALQAELDEISLDEELLAQAAAIEALHQQRGEYRNAEQDLP 306
Query: 130 TLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLV 189
+ E+ A+E L I D ++ + + + + +LE++ L + L
Sbjct: 307 DREGEIANAREAAAALLAQI---GPDADEEAVESLRPSLAAKETVTELEKRKEALDQALK 363
Query: 190 RLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLYDLS 249
RD + ++L L +
Sbjct: 364 SARDALEERERELKQVRAQLAALPT--------------------------VTVPEPLRA 397
Query: 250 AHEIFNNKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEI 309
A D+ L L E+ K + L L + + + + + E
Sbjct: 398 ALADALRAGDIDAALAALEQ-EVAVAKRELAQALSRLGL---WRGDLEELVALPVPSAEQ 453
Query: 310 FNNKNKFDSRLRDLSAHEKHEMSKLQKDIE-----EKKQENAELIKSQEKL-KQRV---- 359
K + ++ + +L++D+E + + A + ++E++ R
Sbjct: 454 VQAFLKEAEEIMQAKRQKRDRLLELEEDLETLELQLRHLDAAGAVPTEEEVAAARARRDA 513
Query: 360 --TELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQL 417
++ A L A A E QL+ + L LV + EA + +QL
Sbjct: 514 LWQDIRRGYALLEPTASAYEEAVESADQLADRLLREAQLVGELQSLRQQEEAARRRLEQL 573
Query: 418 QEDAKEIEIELKE------------EVEMARSATREVIREKEAALESLADRELTIVKFRE 465
+++ + +E+ L + + + + + E+ A E + +
Sbjct: 574 EKELEVLELALAALREAWQAQWAAAGLPLTPAEMEDWLAERATAREQVRAYFKARAELDA 633
Query: 466 LVIREKEAA 474
L+ R
Sbjct: 634 LLDRRARLR 642
Score = 29.3 bits (66), Expect = 7.6
Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 15/158 (9%)
Query: 328 KHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLS 387
E+ +L+ +I E + + ++ + L + + E E + A+L +++ E+ Q+L
Sbjct: 156 LKELKELEAEIREVQLK----TRTWKDLVKALDEAEEELANLRKELRQ---LEKEKQRLE 208
Query: 388 VQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKE 447
+ L L ++A E L AL V D DA E E + E+ AR E++ E+
Sbjct: 209 RLRRLLPLLAERKALEQQ-LAALGEVIDLP-PDAVERYEEARAELRAAR-RNLELLTERL 265
Query: 448 AALESLADRELTIVKFRELVIREKEAALESLADRELTI 485
AL++ D E+++ + + + AA+E+L +
Sbjct: 266 EALQAELD-EISLDE----ELLAQAAAIEALHQQRGEY 298
>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB;
Provisional.
Length = 475
Score = 36.3 bits (84), Expect = 0.048
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 314 NKFDSRLRD-LSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQ 372
FD ++R + + +++QK EE ++E L K + ++R+ +L D A L EQ
Sbjct: 60 TTFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119
Query: 373 VDA 375
V A
Sbjct: 120 VKA 122
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 36.6 bits (85), Expect = 0.048
Identities = 48/198 (24%), Positives = 88/198 (44%), Gaps = 13/198 (6%)
Query: 308 EIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCA 367
E+ N+ S L +L E ++ K K++EE K+E EL K E L+ +LE
Sbjct: 204 EVLREINEISSELPELRE-ELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIR 262
Query: 368 DLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIE 427
+L E+++ ++ +++L + EL++L ++AEE + L ++ ++ +EIE
Sbjct: 263 ELEERIE---ELKKEIEELEEKVKELKEL-KEKAEEYIKLSEFY---EEYLDELREIEKR 315
Query: 428 LKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELTIVK 487
L I E+ LE +R + K + + + E E E K
Sbjct: 316 LSR-----LEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAK 370
Query: 488 FRELNSLDEKVSTENIEK 505
EL L ++++ EK
Sbjct: 371 KEELERLKKRLTGLTPEK 388
Score = 31.2 bits (71), Expect = 2.4
Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 28/180 (15%)
Query: 298 DSRLRDL-SAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLK 356
+ RL++L + + + L E+ E+ KL++++++ +E AE K E+L+
Sbjct: 591 EERLKELEPFYNEYLELKDAEKELER----EEKELKKLEEELDKAFEELAETEKRLEELR 646
Query: 357 QRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQ 416
+ + ELE +EE ++L + LEL ++ E+ +LE +
Sbjct: 647 KELEELE------------KKYSEEEYEELREEYLELSRELAGLRAELEELE------KR 688
Query: 417 LQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALE 476
+E K +E +LKEE+E A +E+ + ++A L E K ++ KE AL
Sbjct: 689 REEIKKTLE-KLKEELEEREKAKKELEKLEKA----LERVEELREKVKKYKALLKERALS 743
Score = 30.4 bits (69), Expect = 4.1
Identities = 38/143 (26%), Positives = 76/143 (53%), Gaps = 5/143 (3%)
Query: 4 EIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLD 63
E++ L+E+LD + E + L+E++ +L+ E + K E + Y E +R+L
Sbjct: 620 ELKKLEEELDKAFEELAETEKRLEELRKELE---ELEKKYSEEEYEELREEYLELSRELA 676
Query: 64 EMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEM 123
++ +L++ + + +I ++ LK ELE+ ++ K+E + ++ + E E + K +
Sbjct: 677 GLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKAL 736
Query: 124 AEERAETLQVELDLAKEKIEELT 146
+ERA L ++A E EELT
Sbjct: 737 LKERA--LSKVGEIASEIFEELT 757
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 36.2 bits (83), Expect = 0.054
Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 8/151 (5%)
Query: 328 KHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLS 387
+ E++ ++++ + +QE A L K + L+ R+ L L Q +L A + Q S
Sbjct: 122 RQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQ-SLQASQKQLQAS 180
Query: 388 VQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKE 447
+L+ + L K ++ EA + + A+ E+ + A T + I++++
Sbjct: 181 ATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAA---AAQQTAQAIQQRD 237
Query: 448 AALESLADRELTIVKFRELVIREKEAALESL 478
A + A + + R IRE+E L+ L
Sbjct: 238 AQISQKAQQ----IAARAEQIRERERQLQRL 264
Score = 31.9 bits (72), Expect = 1.1
Identities = 29/152 (19%), Positives = 61/152 (40%), Gaps = 27/152 (17%)
Query: 330 EMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADL----------HEQVDAA--- 376
++ ++ + + E L +Q + + TE EA ++L +++ AA
Sbjct: 75 QLDDIRPQLRALRTE---LGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQN 131
Query: 377 -LGAEEMVQQLSVQ----KLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIE---L 428
A++ + +L+ Q + L+ L ++ + ++LQ QLQ A +++ + L
Sbjct: 132 LAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDL 191
Query: 429 KEEVEMARSATREVIREKEAA---LESLADRE 457
K + + AA E LA R
Sbjct: 192 KLRSAQIEQEAQNLATRANAAQARTEELARRA 223
Score = 31.1 bits (70), Expect = 2.1
Identities = 17/105 (16%), Positives = 38/105 (36%)
Query: 318 SRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAAL 377
+L+ + K ++ L+ + +QE L + R EL A + A
Sbjct: 175 KQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQ 234
Query: 378 GAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAK 422
+ + Q + Q + + ++ ++ LE Q +Q +
Sbjct: 235 QRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLE 279
>gnl|CDD|224482 COG1566, EmrA, Multidrug resistance efflux pump [Defense
mechanisms].
Length = 352
Score = 35.8 bits (83), Expect = 0.057
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 319 RLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALG 378
R +L+ +L + + A L +Q KQ + LE++ + QV +A
Sbjct: 138 RRAELAQRGVVSREELDRARAALQAAEAALAAAQAAQKQNLALLESEVSGAQAQVASAEA 197
Query: 379 AEEMVQQLSVQKLELEDLV 397
A L KL+LE V
Sbjct: 198 A------LDQAKLDLERTV 210
>gnl|CDD|235591 PRK05755, PRK05755, DNA polymerase I; Provisional.
Length = 880
Score = 36.2 bits (85), Expect = 0.061
Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 28/165 (16%)
Query: 283 LRDLSAHEIFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRD--LSAHEKHEMSKL-QKDIE 339
L D + ++ N K+D L L+ + I FD+ L L +H + L ++ +
Sbjct: 366 LEDPAIKKVGQNLKYD--LHVLARYGIELRGIAFDTMLASYLLDPGRRHGLDSLAERYLG 423
Query: 340 EKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSK 399
K E+ Q Q +LE E D L E+++ +++ L +L
Sbjct: 424 HKTISFEEVAGKQLTFAQ--VDLEEAAEYAAEDADVTLRLHEVLKPKLLEEPGLLEL--- 478
Query: 400 QAEEI-----------------VDLEALQVVSDQLQEDAKEIEIE 427
EEI VD E L+ +S +L + E+E E
Sbjct: 479 -YEEIELPLVPVLARMERNGIKVDREYLKELSAELAQRLAELEQE 522
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 35.5 bits (82), Expect = 0.080
Identities = 25/138 (18%), Positives = 52/138 (37%), Gaps = 3/138 (2%)
Query: 323 LSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEM 382
+S + +L AE I + + +++ + A+ A ++ L E
Sbjct: 137 VSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLS--EQ 194
Query: 383 VQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKE-EVEMARSATRE 441
Q + LE+ A+ +L A Q ++L+ + ++ E+ E A++
Sbjct: 195 RAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAA 254
Query: 442 VIREKEAALESLADRELT 459
E AA A+ + T
Sbjct: 255 AAAEAAAARARAAEAKRT 272
Score = 32.4 bits (74), Expect = 0.80
Identities = 29/143 (20%), Positives = 58/143 (40%), Gaps = 13/143 (9%)
Query: 330 EMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADL-HEQVDAALGAEEMVQQLSV 388
++ ++QK+I +++ E + KL++++ LE + A L + ++ A +++ +Q++
Sbjct: 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIAD 98
Query: 389 QKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEE--VEMARSAT------- 439
L L Q E A Q+ + Q + + E R A
Sbjct: 99 LNARLNAL-EVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNP 157
Query: 440 --REVIREKEAALESLADRELTI 460
E I +A L+ LA I
Sbjct: 158 ARAERIDALKATLKQLAAVRAEI 180
Score = 30.1 bits (68), Expect = 4.0
Identities = 13/56 (23%), Positives = 32/56 (57%)
Query: 318 SRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQV 373
+ L L + ++ + +KL + +EE+K+ A+L ++++ EL A+ + L ++
Sbjct: 185 AELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEI 240
Score = 29.3 bits (66), Expect = 6.1
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 321 RDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAE 380
+ L +K ++L ++ +++ EL ++ +LK + EA A E AA A
Sbjct: 203 QLLEERKKTL-AQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAA 261
Query: 381 EMVQQ 385
+
Sbjct: 262 ARARA 266
Score = 29.3 bits (66), Expect = 6.4
Identities = 33/202 (16%), Positives = 73/202 (36%), Gaps = 61/202 (30%)
Query: 328 KHEMSKLQKDIEEKKQENAELIKSQEKL-------KQRVTEL------------------ 362
+ ++ + D+++ +++ A+L L ++R+ E
Sbjct: 79 EAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVS 138
Query: 363 --EADCAD------------LHEQVDA------ALGAEEMVQQLSVQKLELEDLVSKQAE 402
+A + E++DA L A +++ ++ EL L+S+Q
Sbjct: 139 PEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVR--AEIAAEQAELTTLLSEQRA 196
Query: 403 EIVDLEALQVVSDQLQED-AKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIV 461
+ L L + E+ + K+ E+ + +R ++ + A+ E+ A +
Sbjct: 197 QQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESR--LKNEIASAEAAAAKA---- 250
Query: 462 KFRELVIREKEAALESLADREL 483
RE AA E+ A R
Sbjct: 251 -------REAAAAAEAAAARAR 265
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 35.9 bits (82), Expect = 0.094
Identities = 91/467 (19%), Positives = 173/467 (37%), Gaps = 36/467 (7%)
Query: 9 KEKLDTMKIKYREKTRDLDEMKIQLD---QSAEFKAKIMESQAASSLFRYREKTRDLDEM 65
K+K D K K E + DE+K ++ E K K E + A + E+ + DE
Sbjct: 1390 KKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEA 1449
Query: 66 KIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAE 125
K + +++ KA+ + +A ++ ++ K++ +EA +A E E + K+ AE
Sbjct: 1450 KKKAEEAK--KAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAE 1507
Query: 126 ERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQ------------ 173
+ + + + +K +E E KAD K + E+ +
Sbjct: 1508 AKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAE 1567
Query: 174 --IKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDLS 231
K E +NM LR+ + I K + + A E + + +L
Sbjct: 1568 EAKKAEEDKNMALRKAEE-AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK 1626
Query: 232 AHEIFNNNKFDSRLYDLSAHEIFNNKN-KFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHE 290
E K +L A E + K + A E + + + E
Sbjct: 1627 KAE--EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAE 1684
Query: 291 IFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIK 350
++ ++ + K L+ A EK + +L+K EE K + E K
Sbjct: 1685 EDEKKAAEALKKE-------AEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKK 1737
Query: 351 SQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEAL 410
E+ K++ E + D + + E+ +++ +K + + + +E +E
Sbjct: 1738 EAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVD 1797
Query: 411 QVVSD------QLQEDAKEIEIELKEEVEMARSATREVIREKEAALE 451
+ + D + E KE + + + EM SA +EV K LE
Sbjct: 1798 KKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLE 1844
Score = 35.1 bits (80), Expect = 0.13
Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 12/168 (7%)
Query: 315 KFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVD 374
K +L+ A EK + +L+K EE K + AE K E+ K++ E + D +
Sbjct: 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK--- 1689
Query: 375 AALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEM 434
A E +++ + + + E+L K+AEE E L+ ++ + A+E + E +E+ +
Sbjct: 1690 ----AAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKK 1745
Query: 435 ARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRE 482
A E ++ E + +A + K E + +EKEA +E D E
Sbjct: 1746 A-----EEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEE 1788
Score = 30.9 bits (69), Expect = 2.7
Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 12/160 (7%)
Query: 1 MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTR 60
K + ++ K+K D K K E + E ++A +A+ E +A ++ + E +
Sbjct: 1320 AKKKAEEAKKKADAAKKKAEEAKKA-AEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
Query: 61 DLDEMKIQLDQ--SAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMT 118
D K + ++ A+ K E EL+K K++A EAK+ + + E
Sbjct: 1379 KADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEA-- 1436
Query: 119 LDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEK 158
K+ AEE + D AK+K EE E K E
Sbjct: 1437 --KKKAEEAKKA-----DEAKKKAEEAKKAEEAKKKAEEA 1469
Score = 30.1 bits (67), Expect = 4.6
Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 7/153 (4%)
Query: 18 KYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEM-KIQLDQSAEFK 76
K E+ + + K + + AE K E++ + + E+ R+ +E+ K + + A F
Sbjct: 1207 KAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFA 1266
Query: 77 AKIMESQAGLKRELEKLK--QEKQEAVEAKE-DTADLVETLEMMTLDKEMAEE---RAET 130
+ +A R+ ++LK +EK++A EAK+ + + + + + A+E +AE
Sbjct: 1267 RRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEE 1326
Query: 131 LQVELDLAKEKIEELTLDIELMKADIEKSCDGA 163
+ + D AK+K EE E KA+ E + D A
Sbjct: 1327 AKKKADAAKKKAEEAKKAAEAAKAEAEAAADEA 1359
Score = 30.1 bits (67), Expect = 5.0
Identities = 35/188 (18%), Positives = 89/188 (47%), Gaps = 5/188 (2%)
Query: 2 KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRD 61
+A I+++ + + K E+ + +E KI+ ++ KA+ + + + E+ +
Sbjct: 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK--KAEEEKKKVEQLKKKEAEEKKK 1648
Query: 62 LDEMKIQLDQS---AEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMT 118
+E+K +++ A +AK E E +K ++++++A EA + A+ + E +
Sbjct: 1649 AEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELK 1708
Query: 119 LDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLE 178
+ +++AE L+ + K K EE + E K E++ + +++H + ++ +
Sbjct: 1709 KKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEK 1768
Query: 179 QQNMRLRE 186
+ +E
Sbjct: 1769 KAEEIRKE 1776
Score = 29.3 bits (65), Expect = 8.6
Identities = 30/156 (19%), Positives = 72/156 (46%), Gaps = 4/156 (2%)
Query: 327 EKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQL 386
E+ +M + E+ + AE +K E+ K++V +L+ A+ ++ + AEE +
Sbjct: 1603 EEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIK 1662
Query: 387 SVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREK 446
+ ++ + + K+AEE E ++ +A + E E ++ E + E ++
Sbjct: 1663 AAEEAKKAEEDKKKAEEAKKAEE----DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKA 1718
Query: 447 EAALESLADRELTIVKFRELVIREKEAALESLADRE 482
E ++ + ++ + ++ +K+ A E+ D E
Sbjct: 1719 EELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEE 1754
Score = 29.0 bits (64), Expect = 9.7
Identities = 25/126 (19%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Query: 325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQ 384
A E + + +K EE K++ K E+ K+ +A+ ++ +AA E +
Sbjct: 1311 AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAE 1370
Query: 385 QLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIE--IELKEEVEMARSATREV 442
+ + + D K+AEE + + +++ ++ A E++ K++ + A+ E
Sbjct: 1371 KKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEK 1430
Query: 443 IREKEA 448
+ EA
Sbjct: 1431 KKADEA 1436
>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation,
ribosomal structure and biogenesis].
Length = 363
Score = 34.9 bits (81), Expect = 0.11
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
Query: 42 KIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAV 101
+ + S L RY E L + ++ D E++ K+ + A ELE + ++ +E
Sbjct: 3 PSLLEKLESLLERYEELEALLSDPEVISDP-DEYR-KLSKEYA----ELEPIVEKYREYK 56
Query: 102 EAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELM 152
+A+ED D E L D EM E + E+ + KIEEL +++++
Sbjct: 57 KAQEDLEDAKEMLAEEK-DPEMREM----AEEEIKELEAKIEELEEELKIL 102
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein,
HlyD family. Type I secretion is an ABC transport
process that exports proteins, without cleavage of any
signal sequence, from the cytosol to extracellular
medium across both inner and outer membranes. The
secretion signal is found in the C-terminus of the
transported protein. This model represents the adaptor
protein between the ATP-binding cassette (ABC) protein
of the inner membrane and the outer membrane protein,
and is called the membrane fusion protein. This model
selects a subfamily closely related to HlyD; it is
defined narrowly and excludes, for example, colicin V
secretion protein CvaA and multidrug efflux proteins
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 423
Score = 35.0 bits (81), Expect = 0.11
Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 4/130 (3%)
Query: 332 SKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAA--LGAEEMVQQLSVQ 389
S L+ +E + +L L+ ++ L + E+++A L + +V +L +
Sbjct: 140 STLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELL 199
Query: 390 KLE--LEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKE 447
+LE + + +LE L+ D+LQ + ++IE +EEV + + + E
Sbjct: 200 ELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELR 259
Query: 448 AALESLADRE 457
L DR
Sbjct: 260 ERLNKARDRL 269
Score = 33.4 bits (77), Expect = 0.33
Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 17/133 (12%)
Query: 68 QLDQSAEFKAKIMESQAGLKRELEKLKQEKQ---EAVEAKEDTAD--LVETLEMMTLDKE 122
QL+ ++ AGL+ +L+ L+Q+ + E +EA+ + LV LE++ L++E
Sbjct: 145 QLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERE 204
Query: 123 MAEERAETLQVELDL--AKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQ 180
AE + E ++E +L K +I+EL L+ + ++ + EV ++ + + +
Sbjct: 205 RAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFRE---------EVLE-ELTEAQAR 254
Query: 181 NMRLRETLVRLRD 193
LRE L + RD
Sbjct: 255 LAELRERLNKARD 267
Score = 31.5 bits (72), Expect = 1.5
Identities = 31/178 (17%), Positives = 68/178 (38%), Gaps = 11/178 (6%)
Query: 335 QKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGA-EEMVQQLSVQKLEL 393
+ E Q E + L + ++ ++ + Q +L
Sbjct: 99 RLRAEADSQAAIEF--PDDLLSAEDPAVPELIKGQQSLFESRKSTLRAQLELILAQIKQL 156
Query: 394 EDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEM-----ARSATREVIREKE 447
E ++ ++ L L+V+S++L+ K E L +E+ R+ + + E
Sbjct: 157 EAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLE 216
Query: 448 AALESL-ADRELTIVKFRELVIREKEAALESLADRELTIVKFRE-LNSLDEKVSTENI 503
A LE L + ++ +++ +E LE L + + + + RE LN +++ I
Sbjct: 217 AELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQRLII 274
>gnl|CDD|179156 PRK00888, ftsB, cell division protein FtsB; Reviewed.
Length = 105
Score = 32.6 bits (75), Expect = 0.12
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 329 HEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDA 375
+ ++ + ++Q NA KLK R +L A+ DL +A
Sbjct: 27 LDYWRVNDQVAAQQQTNA-------KLKARNDQLFAEIDDLKGGQEA 66
>gnl|CDD|236033 PRK07500, rpoH2, RNA polymerase factor sigma-32; Reviewed.
Length = 289
Score = 34.2 bits (79), Expect = 0.16
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 352 QEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQ 411
+ +L Q EL ++H ++ ALG ++ +L D S A + + E
Sbjct: 135 RARLAQADEEL--TKQEIHREIATALGVSLSDVEMMDARLSGPDA-SLNAPQSEEDEGRS 191
Query: 412 VVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREK 471
D L +D+ + +++ ++ R R + + AL++L +REL I++ R L RE
Sbjct: 192 ERMDFLVDDSPLPDEQVESSIDGERR--RRWLTQ---ALQTLNERELRIIRERRL--RED 244
Query: 472 EAALESLADRELTIVKFR 489
A LE+L + EL I K R
Sbjct: 245 GATLEALGE-ELGISKER 261
>gnl|CDD|220366 pfam09728, Taxilin, Myosin-like coiled-coil protein. Taxilin
contains an extraordinarily long coiled-coil domain in
its C-terminal half and is ubiquitously expressed. It is
a novel binding partner of several syntaxin family
members and is possibly involved in Ca2+-dependent
exocytosis in neuroendocrine cells. Gamma-taxilin,
described as leucine zipper protein Factor Inhibiting
ATF4-mediated Transcription (FIAT), localises to the
nucleus in osteoblasts and dimerises with ATF4 to form
inactive dimers, thus inhibiting ATF4-mediated
transcription.
Length = 309
Score = 34.3 bits (79), Expect = 0.17
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 322 DLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEE 381
+L+ + + +Q +EE N +L + E+L++++ EL + + L ++
Sbjct: 107 ELTEKFQSTLKDIQDQMEEHSNPNHKLCEENEELREKLKELIEQYELREQHFEKLLKTKD 166
Query: 382 MVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQ-EDAKEIEIELKEEVEM 434
+ QQL+ KLE ++Q +E E ++ + Q KE E EL+ ++ +
Sbjct: 167 LEQQLNDAKLEQAQEQAEQEQEKHKREKEILLKEAAQVSTLKETEKELRAQLNL 220
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 34.5 bits (79), Expect = 0.17
Identities = 32/161 (19%), Positives = 80/161 (49%), Gaps = 16/161 (9%)
Query: 303 DLSAHEIFNNKNKFDSRLRDLSAHE---KHEMSKLQKDIEEKKQENAELIKSQEKLKQRV 359
+L N+++ +++ L++ E K ++ +L+K+ + + + ++ +++K KQ +
Sbjct: 421 ELQQAR--QNESELRNQISLLTSLERSLKSDLGQLKKENDMLQTKLNSMVSAKQKDKQSM 478
Query: 360 TELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDL-----EALQVVS 414
+E L + D+ + AE+ + + +K E E+ ++ A + E+L+
Sbjct: 479 QSME---KRLKSEADSRVNAEKQLAEEKKRKKEEEETAARAAAQAAASREECAESLKQAK 535
Query: 415 DQLQEDAKEIEIELK---EEVEMARSATREVIREKEAALES 452
L+ + K++E +LK EE M +E+ + +E+ E+
Sbjct: 536 QDLEMEIKKLEHDLKLKEEECRMLEKEAQELRKYQESEKET 576
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 34.5 bits (80), Expect = 0.17
Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 271 EIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNK-NKFDSRLRDLSAHEKH 329
E+ + + + L++ + + RL L E + K D + +L EK
Sbjct: 59 EVHKLRAELERELKERRNEL----QRLERRL--LQREETLDRKMESLDKKEENLEKKEK- 111
Query: 330 EMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCAD--LHEQVDAALGAEEMVQQLS 387
E+S +K+++EK++E ELI Q + +R++ L + A L E+V+ E + +
Sbjct: 112 ELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEA-RHEAAKLIK 170
Query: 388 VQKLELEDLVSKQAEEIV 405
+ E ++ K+A+EI+
Sbjct: 171 EIEEEAKEEADKKAKEIL 188
Score = 32.6 bits (75), Expect = 0.66
Identities = 32/136 (23%), Positives = 70/136 (51%), Gaps = 11/136 (8%)
Query: 2 KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMES--QAASSLFRYRE-- 57
K E+ L+ +L+ +E+ +L ++ +L Q E + MES + +L + +
Sbjct: 57 KEEVHKLRAELERE---LKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKEL 113
Query: 58 --KTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLE 115
K ++LDE + +L++ + + +E +GL +E K ++ EA+ + A L++ +E
Sbjct: 114 SNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIE 173
Query: 116 MMTLDKEMAEERAETL 131
KE A+++A+ +
Sbjct: 174 EEA--KEEADKKAKEI 187
Score = 29.1 bits (66), Expect = 7.9
Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 38/160 (23%)
Query: 328 KHEMSKLQKDIE-EKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQL 386
K E+ KL+ ++E E K+ EL + + +L QR L+ L ++
Sbjct: 57 KEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKK-------------- 102
Query: 387 SVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVE----MARSATREV 442
E+L K+ E L + D+ +E+ +E+ E +EE+E + + +E+
Sbjct: 103 ------EENLEKKEKE----LSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEI 152
Query: 443 IREKEAALESLADRELTIVKFRELVIREKEAALESLADRE 482
+ E+ +E A E +I+E E + AD++
Sbjct: 153 LLEE---VEEEARHEAAK------LIKEIEEEAKEEADKK 183
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 34.6 bits (80), Expect = 0.18
Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 20/178 (11%)
Query: 312 NKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHE 371
++ L L A K E+ +L K + E K E E + + LK++ EL +
Sbjct: 153 KEDNLKDDLESLIASAKEELDQLSKKLAELKAEEEEEL--ERALKEKREELLSK------ 204
Query: 372 QVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEAL--QVVSDQLQEDAKEIEIELK 429
L E + + S + + L + E +L + + +L+ A+ E +LK
Sbjct: 205 -----LEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAHEQKLK 259
Query: 430 EEVEMAR-SATREVIREKEAALESLADRELTIVKFRELV--IREKEAALESLADRELT 484
E+ + RE +E + +E +R + K EL ++ E AL+S ++ E
Sbjct: 260 NELALQAIELQREFNKEIKEKVE--EERNGRLAKLAELNSRLKGLEKALDSRSEAEDE 315
Score = 33.8 bits (78), Expect = 0.31
Identities = 27/147 (18%), Positives = 64/147 (43%), Gaps = 9/147 (6%)
Query: 7 DLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMK 66
DL+ + + K + + ++ L E+K + ++ E + ++ + L + E+ E K
Sbjct: 160 DLESLIASAKEELDQLSKKLAELKAEEEEELE---RALKEKREELLSKLEEELLARLESK 216
Query: 67 IQLDQS---AEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEM 123
+ EF+ + E + + +L + + + EA E K + + + L +E
Sbjct: 217 EAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAHEQK--LKNELALQAI-ELQREF 273
Query: 124 AEERAETLQVELDLAKEKIEELTLDIE 150
+E E ++ E + K+ EL ++
Sbjct: 274 NKEIKEKVEEERNGRLAKLAELNSRLK 300
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 34.3 bits (79), Expect = 0.19
Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 10/132 (7%)
Query: 300 RLRDLSAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRV 359
R+ + E ++L E+++ +E ++E EL + +E+L Q+
Sbjct: 37 RILQEAQKEAEEKLEAALLEAKELLLRERNQ------QRQEARREREELQREEERLVQKE 90
Query: 360 TELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQE 419
+L+A L + E+ + ++ ELE + + + L Q +
Sbjct: 91 EQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQ----ARKL 146
Query: 420 DAKEIEIELKEE 431
K ++ EL+EE
Sbjct: 147 LLKLLDAELEEE 158
>gnl|CDD|221489 pfam12252, SidE, Dot/Icm substrate protein. This family of proteins
is found in bacteria. Proteins in this family are
typically between 397 and 1543 amino acids in length.
This family is the SidE protein in the Dot/Icm pathway of
Legionella pneumophila bacteria. There is little
literature describing the family.
Length = 1443
Score = 34.5 bits (79), Expect = 0.20
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 14/125 (11%)
Query: 25 DLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQ--LDQSAEFKAKIMES 82
DLD++ L + I+ + SSL + + KT ++ E +IQ + A+ + + +S
Sbjct: 1242 DLDKLSGNLQGVNQSLVSILITTIRSSLNQMKPKTFEMQEKEIQQNFELLAKLEKTLDKS 1301
Query: 83 QAG--LKRELEKLKQ---EKQEA----VEAKEDTADLVETLEMM--TLDKEMAEERAETL 131
L+ ++ KLK KQ+A V+ + + L+ L + ++A+ R L
Sbjct: 1302 DTAEKLREDIPKLKDLLIAKQKAYPEMVQLQYKSEALITQLRELCQAHHDDLAKTRTARL 1361
Query: 132 QVELD 136
Q ELD
Sbjct: 1362 Q-ELD 1365
>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827).
This family consists of several plant proteins of
unknown function. Several sequences in this family are
described as being "myosin heavy chain-like".
Length = 484
Score = 34.2 bits (78), Expect = 0.20
Identities = 78/373 (20%), Positives = 135/373 (36%), Gaps = 38/373 (10%)
Query: 115 EMMTLDKEMAEERAETLQVELDL--AKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHY 172
E L KE+ E LQV +L K +E+L L +E EK A +E++
Sbjct: 44 EANKLKKELEVAEKEKLQVLKELESTKRTVEDLKLKLE----KAEKEEQQAKQDSELAKL 99
Query: 173 QIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDLSA 232
+ ++LEQ L ++ + + + ++ + A
Sbjct: 100 RAEELEQGIQEL--------EVERYITATAELDSVKEELRKIRQEYDALVEERDAALKRA 151
Query: 233 HEIFNNNKFDSRLYDLSAHEIFNNKNKFDS-RLRDLSAHEIFNNKNKFDSRLRDLSAHEI 291
E +K + + + EI K + L A E + R+ E+
Sbjct: 152 EEAICASKVNEKKVEELTKEIIAMKESLERAHAAHLEAEEERIGAALEKDQDRETYEKEL 211
Query: 292 FNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQK----------DIEEK 341
K RL+ E K S + E M+ + ++E+
Sbjct: 212 KEAEKELERLKQDLDPEKDLEKLAEASAELESLQKEISIMASVASVLKELEEAKANLEKA 271
Query: 342 KQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQA 401
+E L E LKQ + E + + +L E+ E + + LE E +K
Sbjct: 272 AEEEKSLRNLVESLKQELEEEKKELEELREK--------EGEAEEAASSLEAELNRTKSE 323
Query: 402 EEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIV 461
+E E + + +LQ+ + E E E ++E E AR R++ E E +L EL +
Sbjct: 324 KESKAREKMVEIPLKLQQASSEAE-EARKEAEAAREELRKLKEEAEQTKAALETAELRL- 381
Query: 462 KFRELVIREKEAA 474
E ++E EAA
Sbjct: 382 ---EAALKEAEAA 391
Score = 29.6 bits (66), Expect = 5.4
Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 13/168 (7%)
Query: 328 KHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLS 387
E L+ +E KQE E K E+L+++ E E + L +++ +E +
Sbjct: 272 AEEEKSLRNLVESLKQELEEEKKELEELREKEGEAEEAASSLEAELNRTKSEKESKAREK 331
Query: 388 VQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKE 447
+ ++ L+ + E EA E A+E +LKEE E ++A E
Sbjct: 332 MVEIPLKLQQASSEAEEARKEA---------EAAREELRKLKEEAEQTKAALETAELRLE 382
Query: 448 AAL----ESLADRELTIVKFRELVIREKEAALESLADRELTIVKFREL 491
AAL + A L + + + L E+ A +S L++ ++ EL
Sbjct: 383 AALKEAEAAKAAEALALAEIKALQESEESAKADSPRKITLSLEEYEEL 430
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 34.4 bits (79), Expect = 0.26
Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 8/136 (5%)
Query: 355 LKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDL---EALQ 411
L+ T+ + DL D A E ++L + LE + L A Q
Sbjct: 271 LRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQ 330
Query: 412 VVS--DQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFREL--- 466
++ + DA+ ++ + + R A + E+ E + + R
Sbjct: 331 DAEELERARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQ 390
Query: 467 VIREKEAALESLADRE 482
+ R E A S A
Sbjct: 391 LARAAERAGLSPAHTA 406
Score = 30.5 bits (69), Expect = 3.9
Identities = 37/160 (23%), Positives = 55/160 (34%), Gaps = 13/160 (8%)
Query: 340 EKKQENAELIKSQEKLKQRVTELEADCADLH--------EQVDAALGA-EEMVQQLSVQK 390
E + + + KQ ELE D ADL E V AL + + L V
Sbjct: 808 ELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKRFGDHLHTLEVAV 867
Query: 391 LELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAAL 450
EL ++ AE+ + + + EDA E E +E A R + A +
Sbjct: 868 RELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEE----ASLRLRTLEESVGAMV 923
Query: 451 ESLADRELTIVKFRELVIREKEAALESLADRELTIVKFRE 490
+ + R RE E+LA E + E
Sbjct: 924 DEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEE 963
Score = 29.0 bits (65), Expect = 9.1
Identities = 25/121 (20%), Positives = 42/121 (34%)
Query: 371 EQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKE 430
E AA A E + + + + + AE + E + L+E + E++
Sbjct: 869 ELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRA 928
Query: 431 EVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELTIVKFRE 490
+ R+A RE E+LA E + E E R+ I + RE
Sbjct: 929 RLAETRAALASGGRELPRLAEALATAEEARGRAEEKRAEADATLDERAEARDHAIGQLRE 988
Query: 491 L 491
Sbjct: 989 F 989
>gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated.
Length = 359
Score = 33.9 bits (79), Expect = 0.26
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 23/105 (21%)
Query: 54 RYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLK------RELEKLKQEKQEAVEAKEDT 107
RY E L + ++ DQ F+ K+ + A L+ RE ++ +++ +EA E E+
Sbjct: 14 RYEELEALLSDPEVISDQ-KRFR-KLSKEYAELEPIVEAYREYKQAQEDLEEAKEMLEEE 71
Query: 108 ADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELM 152
+D EM +EMA+E EL +E++EEL +++++
Sbjct: 72 SDP----EM----REMAKE-------ELKELEERLEELEEELKIL 101
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 32.8 bits (75), Expect = 0.33
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 329 HEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSV 388
E+ L++ I E + E +L + + L++ + LE L E + A+E+ +
Sbjct: 93 EELEDLEERIAELESELEDLKEDLQLLRELLKSLEERLESLEESIKEL--AKELRELRQD 150
Query: 389 QKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKE 430
+ E+E+L +LE LQ +LQE +E++ L++
Sbjct: 151 LREEVEELRE-------ELERLQENLQRLQEAIQELQSLLEQ 185
Score = 30.1 bits (68), Expect = 2.3
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 46 SQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE 105
+ + E +L E+K QL + E + E A L+ ELE LK++ Q E +
Sbjct: 65 PVQSVRPQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLK 124
Query: 106 DTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEK 158
+ +E+LE KE+A+E E Q + +E EEL E ++ E
Sbjct: 125 SLEERLESLEE--SIKELAKELRELRQDLREEVEELREELERLQENLQRLQEA 175
>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase.
Length = 448
Score = 33.5 bits (77), Expect = 0.33
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 330 EMSKLQKDI---EEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAAL 377
E +KL K++ + K++ ELI ++LK+ +TE EA+ + +DA L
Sbjct: 55 EFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKL 105
>gnl|CDD|224755 COG1842, PspA, Phage shock protein A (IM30), suppresses
sigma54-dependent transcription [Transcription / Signal
transduction mechanisms].
Length = 225
Score = 33.1 bits (76), Expect = 0.34
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 16/128 (12%)
Query: 330 EMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQ 389
+ ++ ++ + +Q A+ I Q++L++++ E +A L E+ + AL A
Sbjct: 32 AIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN-------- 83
Query: 390 KLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAA 449
EDL + EE LE L + + A+E +LK+++ A + I E A
Sbjct: 84 ----EDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLA----ALEQKIAELRAK 135
Query: 450 LESLADRE 457
E+L R+
Sbjct: 136 KEALKARK 143
Score = 30.4 bits (69), Expect = 2.1
Identities = 23/103 (22%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 62 LDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVE------AKEDTADLVETLE 115
+ +M+ +L ++ + A+ + Q L+R+LE+ + ++ E + E LE
Sbjct: 33 IRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALE 92
Query: 116 MMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEK 158
+K+ E+ A+ L+ EL A+E++E+L + ++ I +
Sbjct: 93 ----EKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAE 131
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 33.3 bits (76), Expect = 0.35
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 19/162 (11%)
Query: 330 EMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGA----EEMVQQ 385
E L++D EE K++ EL K +E+L + + ELEA+ ++ E++ EEM+++
Sbjct: 129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKK 188
Query: 386 LSVQKLELEDLVSKQAEEIVDLEALQV---VSDQLQEDAKEIE------IELKEEVEMAR 436
L + +L+ + + E + V + L K+IE E ++EVE+
Sbjct: 189 LPGEVYDLKKRWDELEPGVELPEEELISDLVKETLNLAPKDIEGQGYIYAEDEKEVEILL 248
Query: 437 SATREVIREKEAALESLADRELTIVKF-RELVIREKEAALES 477
+E A+E EL I+K E VI E + E
Sbjct: 249 GTVYIAAPSREDAVE-----ELEIIKEAIEEVIPEIDEEGEG 285
Score = 31.8 bits (72), Expect = 1.00
Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 26/158 (16%)
Query: 318 SRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAAL 377
L++ K ++ +LQK+ EE +E EL E++++R+ LE + + L E +
Sbjct: 131 MDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190
Query: 378 GAEEMVQQLSVQKLELED--------LVSKQAEEIVDLEALQVVSDQLQEDAKEIEIEL- 428
G V L + ELE L+S +E ++L + E E+E+
Sbjct: 191 GE---VYDLKKRWDELEPGVELPEEELISDLVKETLNLAPKDIEGQGYIYAEDEKEVEIL 247
Query: 429 --------------KEEVEMARSATREVIREKEAALES 452
EE+E+ + A EVI E + E
Sbjct: 248 LGTVYIAAPSREDAVEELEIIKEAIEEVIPEIDEEGEG 285
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels
of palindromic sequences in DNA. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1042
Score = 33.8 bits (77), Expect = 0.38
Identities = 55/292 (18%), Positives = 105/292 (35%), Gaps = 20/292 (6%)
Query: 81 ESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKE 140
++ + E ++ + + + L + +E+A + ++L L +E
Sbjct: 599 LTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQE 658
Query: 141 KIEELTLDIELMKADIEKSCDGAGDGTEVSHYQI----KQLEQQNMRLRETLVRLRDLSA 196
++ E L I ++ ++ S A + Q+ + L Q LRE + +
Sbjct: 659 RVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDR 718
Query: 197 HEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRD----LSAHEIFNNNKFDSRLYDLSAHE 252
N S DL+A E N + L A + N + L
Sbjct: 719 EFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAAL---- 774
Query: 253 IFNNKNKFDSRLRDLSAH-EIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFN 311
+ + L L+A + FN + D+ L EI D + +L +
Sbjct: 775 ------QTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQ 828
Query: 312 NKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELE 363
+ +F SRL + SA E++ EE ++ A+L + Q K+ Q +L
Sbjct: 829 EEEQFLSRLEEKSA-TLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLN 879
>gnl|CDD|217843 pfam04012, PspA_IM30, PspA/IM30 family. This family includes PspA
a protein that suppresses sigma54-dependent
transcription. The PspA protein, a negative regulator of
the Escherichia coli phage shock psp operon, is produced
when virulence factors are exported through secretins in
many Gram-negative pathogenic bacteria and its homologue
in plants, VIPP1, plays a critical role in thylakoid
biogenesis, essential for photosynthesis. Activation of
transcription by the enhancer-dependent bacterial
sigma(54) containing RNA polymerase occurs through ATP
hydrolysis-driven protein conformational changes enabled
by activator proteins that belong to the large AAA(+)
mechanochemical protein family. It has been shown that
PspA directly and specifically acts upon and binds to
the AAA(+) domain of the PspF transcription activator.
Length = 220
Score = 32.7 bits (75), Expect = 0.39
Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 16/124 (12%)
Query: 334 LQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLEL 393
+Q ++ + +Q A++I Q++L++++ E + L + AAL
Sbjct: 35 MQSELGKARQALAQVIARQKQLERKLEEQKEQAKKLENKARAALTKGN------------ 82
Query: 394 EDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESL 453
E+L + EI LE + + +L++++ A I++ +A +L
Sbjct: 83 EELAREALAEIATLEKQAEALETQLTQQRSAVEQLRKQLA----ALETKIQQLKAKKTAL 138
Query: 454 ADRE 457
R
Sbjct: 139 KARL 142
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 33.6 bits (77), Expect = 0.40
Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 17/142 (11%)
Query: 2 KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRD 61
K EI L EKL ++ + +K L+++ + E K +E + R R K +
Sbjct: 510 KEEINVLIEKLSALEKELEQKNEHLEKLLKEQ----EKLKKELEQEMEELKERERNKKLE 565
Query: 62 LDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDK 121
L++ ++ E + + + REL++ K K + +++ ED L ET K
Sbjct: 566 LEK------EAQEALKALKKEVESIIRELKEKKIHKAKEIKSIEDLVKLKET-------K 612
Query: 122 EMAEERAETLQVELDLAKEKIE 143
+ ++ Q + K +I
Sbjct: 613 QKIPQKPTNFQADKIGDKVRIR 634
>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone.
This is a family of proteins that form part of the CAZ
(cytomatrix at the active zone) complex which is
involved in determining the site of synaptic vesicle
fusion. The C-terminus is a PDZ-binding motif that binds
directly to RIM (a small G protein Rab-3A effector). The
family also contains four coiled-coil domains.
Length = 774
Score = 33.4 bits (76), Expect = 0.47
Identities = 38/175 (21%), Positives = 78/175 (44%), Gaps = 11/175 (6%)
Query: 3 AEIQDLKEKLDTMKIKYREKTRDLDEMKIQL-DQSAEFKAKIMESQAASSLFRYREKTRD 61
+++ L++K++ ++ +R K R L E K +L + + +L EK R
Sbjct: 392 RKLRVLQKKIENLQETFRRKERRLKEEKERLRSLQTDTNTDTALEKLEKAL---AEKERI 448
Query: 62 LDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQ----EAVEAKEDTADLVETLEMM 117
++ +K Q D+ ++ E K+E E LK+E Q + E + L E + +
Sbjct: 449 IERLKEQRDRDERYE---QEEFETYKKEFEDLKEEVQNLQLKLSERELQLELLKEEVSKL 505
Query: 118 TLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHY 172
++ E +EL+ +EK E+L +++ ++A+ E + G+ S
Sbjct: 506 ASNQLKQRSDLERAHIELEKIREKHEKLEKELKRLRANPESADRGSAVDAGTSRS 560
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 32.8 bits (75), Expect = 0.48
Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 4/117 (3%)
Query: 32 QLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELE 91
+ Q E + + ME + E E++ +L Q E + + L+ E
Sbjct: 5 REQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENR 64
Query: 92 KLKQEKQEAVEAKEDTADLVETLEM----MTLDKEMAEERAETLQVELDLAKEKIEE 144
+L++E + E +E V+ + ++E E LQ EL A+E E
Sbjct: 65 RLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREAQEAHER 121
>gnl|CDD|148635 pfam07139, DUF1387, Protein of unknown function (DUF1387). This
family represents a conserved region approximately 300
residues long within a number of hypothetical proteins
of unknown function that seem to be restricted to
mammals.
Length = 301
Score = 32.7 bits (74), Expect = 0.53
Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Query: 46 SQAASSLFRYREKTRDLDEMKIQLDQS--AEFKAKIMESQAGLKRELEKLKQEKQEAVEA 103
+ SL RYR ++ + I+ + AE ++ +M+ + L E++K+K E E +E+
Sbjct: 162 QRCTVSLARYRVVVKEEMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILES 221
Query: 104 KEDTADLVETLEMMT-LDKEMAEERAETLQVELDLAKEKIEELTLDIELMKA 154
++ A E L+ +T +M+EE+ L+ ++ K + E D EL KA
Sbjct: 222 RQKKA---EELKRLTDRAAQMSEEQLVELRADI---KHFVSERKYDEELGKA 267
>gnl|CDD|227900 COG5613, COG5613, Uncharacterized conserved protein [Function
unknown].
Length = 400
Score = 33.0 bits (75), Expect = 0.53
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 374 DAALGAEEMVQQLSVQKL--ELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEE 431
ALG ++Q L E L + D++ LQ + ++L+E+ K + +EE
Sbjct: 311 TVALGVTNGIRQAGTTALNAEAAQLQADSQLAAADVQNLQRIIERLKEELKLELEKAQEE 370
Query: 432 VEMARSATREVIREKEAALESLADRELTIVKFR 464
+E + ++ L +LA IV R
Sbjct: 371 MENIFAM----LQAVGDTLHNLASVPARIVSGR 399
>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and conversion].
Length = 562
Score = 32.7 bits (75), Expect = 0.60
Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 34 DQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSA--EFKAKIMESQAGLKRELE 91
+ +AE+ + S AS++ RE+ L + + E ++M G+ R E
Sbjct: 406 EAAAEYAKEKSGSPPASAVEAERERFDALLRRGGDENPAQIREELQEVMGDNVGIFRNEE 465
Query: 92 KLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVE--LDLAK 139
L++ ++ E +E D+ T + + + L++ LD+A+
Sbjct: 466 GLEKALEKLKELRERLKDIRVTD----KSELFNTDLRDALELGNMLDVAE 511
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail. The myosin molecule is a
multi-subunit complex made up of two heavy chains and
four light chains it is a fundamental contractile
protein found in all eukaryote cell types. This family
consists of the coiled-coil myosin heavy chain tail
region. The coiled-coil is composed of the tail from two
molecules of myosin. These can then assemble into the
macromolecular thick filament. The coiled-coil region
provides the structural backbone the thick filament.
Length = 859
Score = 32.7 bits (75), Expect = 0.63
Identities = 102/472 (21%), Positives = 186/472 (39%), Gaps = 86/472 (18%)
Query: 46 SQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE 105
+Q + + R+L+E +L+ +AK +++A L RELE+L + +EA A
Sbjct: 35 AQLQKKIKELEARIRELEE---ELEAERAARAKAEKARADLSRELEELSERLEEAGGATA 91
Query: 106 DTADLVETLEM--MTLDKEMAEERAETLQVELDLAK---EKIEELTLDIELM-----KAD 155
+L + E L K++ E + + L K + I EL+ IE + KA+
Sbjct: 92 AQIELNKKREAELAKLRKDLEEANLQHEEALATLRKKHQDAINELSEQIEQLQKQKAKAE 151
Query: 156 IEKS------------CDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNN 203
EKS D + + KQLE Q L+ V+L +L
Sbjct: 152 KEKSQLQAEVDDLLAQLDQIAKAKLNAEKKAKQLESQLSELQ---VKLDELQRQ------ 202
Query: 204 KFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNN------KFDSRLYDL--SAHEIFN 255
L DL++ + ++ R L E +N + +S+L + S E
Sbjct: 203 -----LNDLTSQKSRLQSENSDLTRQLEEAEAQVSNLSKLKSQLESQLEEAKRSLEEESR 257
Query: 256 NKNKFDSRLRDL---------SAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSA 306
+ ++LR L E K + + +L +A +KF+S L A
Sbjct: 258 ERANLQAQLRQLEHDLDSLREQLEEESEAKAELERQLSKANAEIQQWRSKFESEG-ALRA 316
Query: 307 HEIFNNKNKFDSRLRDLSAHEKHEMSK-----------------LQKDIEEKKQENAELI 349
E+ K K + ++ +L + +K LQ ++E +EL
Sbjct: 317 EELEELKKKLNQKISELEEAAEAANAKCDSLEKTKSRLQSELEDLQIELERANAAASELE 376
Query: 350 KSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEA 409
K Q+ + + E + +L ++D A+ + LS + L++ + + +++ EA
Sbjct: 377 KKQKNFDKILAEWKRKVDELQAELD---TAQREARNLSTELFRLKNELEELKDQV---EA 430
Query: 410 LQVVSDQLQEDAKEIEIELKE------EVEMARSATREVIREKEAALESLAD 455
L+ + LQ++ ++ +L E E+E AR E +AALE
Sbjct: 431 LRRENKNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEKDELQAALEEAEA 482
>gnl|CDD|203138 pfam04977, DivIC, Septum formation initiator. DivIC from B.
subtilis is necessary for both vegetative and
sporulation septum formation. These proteins are mainly
composed of an amino terminal coiled-coil.
Length = 80
Score = 29.9 bits (68), Expect = 0.71
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 329 HEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEAD 365
+L ++I + E A+L E+L+ V +L++D
Sbjct: 17 SAYYQLNQEIAALQAELAKLKAENEELEAEVKDLKSD 53
Score = 27.5 bits (62), Expect = 5.3
Identities = 14/39 (35%), Positives = 16/39 (41%)
Query: 337 DIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDA 375
+ QE A L KLK ELEA+ DL D
Sbjct: 18 AYYQLNQEIAALQAELAKLKAENEELEAEVKDLKSDPDY 56
>gnl|CDD|223148 COG0070, GltB, Glutamate synthase domain 3 [Amino acid transport
and metabolism].
Length = 301
Score = 32.3 bits (74), Expect = 0.77
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 14/95 (14%)
Query: 394 EDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESL 453
D E+V+LE+L + E E +LKE +E T E A E L
Sbjct: 217 SDFPLGVNAELVELESL--------TEEDEEE-KLKELIEEHVEYT-----GSEKAKEIL 262
Query: 454 ADRELTIVKFRELVIREKEAALESLADRELTIVKF 488
+ EL KF ++ RE L AD E F
Sbjct: 263 ENWELYEEKFVKVKPREYRPFLLLNADAEAAGEDF 297
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 32.6 bits (75), Expect = 0.82
Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Query: 330 EMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQ 389
S L D E+ ++AE +++K ++ E+++A AEE V L
Sbjct: 497 ASSGLSDDEIERMVKDAEEYAAEDKKRK-------------ERIEAKNEAEEYVYSLEKS 543
Query: 390 KLELEDLVSKQAEEIVDLEALQVVSDQLQ-EDAKEIEIELKE 430
E D + + ++ V+ EA++ + ++L+ ED +EIE + +E
Sbjct: 544 LKEEGDKLPEADKKKVE-EAIEWLKEELEGEDKEEIEAKTEE 584
Score = 28.7 bits (65), Expect = 9.8
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 95 QEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEEL-----TLDI 149
++++E +EAK + + V +LE K + EE + + + +E IE L D
Sbjct: 521 KKRKERIEAKNEAEEYVYSLE-----KSLKEEGDKLPEADKKKVEEAIEWLKEELEGEDK 575
Query: 150 ELMKADIEK 158
E ++A E+
Sbjct: 576 EEIEAKTEE 584
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain
(CALCOCO1) like. Proteins found in this family are
similar to the coiled-coil transcriptional coactivator
protein coexpressed by Mus musculus (CoCoA/CALCOCO1).
This protein binds to a highly conserved N-terminal
domain of p160 coactivators, such as GRIP1, and thus
enhances transcriptional activation by a number of
nuclear receptors. CALCOCO1 has a central coiled-coil
region with three leucine zipper motifs, which is
required for its interaction with GRIP1 and may regulate
the autonomous transcriptional activation activity of
the C-terminal region.
Length = 546
Score = 32.3 bits (73), Expect = 0.84
Identities = 30/148 (20%), Positives = 73/148 (49%), Gaps = 14/148 (9%)
Query: 7 DLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMK 66
+LK++L M I+ R++ + +++++ +Q E + ++ + SS + +L +
Sbjct: 259 ELKQRLKKMTIQRRDEETERIDLQLENEQLHE-DLRTLQERLESSQQKAGLLGEELASLG 317
Query: 67 IQLD-----------QSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETL- 114
D +SA+ ++ + LK + QE++ ++ E D ++ L
Sbjct: 318 SLRDHTIAELHQSRLESAQMSLQLSQLNLALKEGQSQWAQERETLRQSAEADKDRIQKLS 377
Query: 115 -EMMTLDKEMAEERAETLQVELDLAKEK 141
E++ L++ + EER++ ++E++L EK
Sbjct: 378 AELLKLEEWLQEERSQREKLEVELGIEK 405
Score = 30.7 bits (69), Expect = 3.0
Identities = 31/145 (21%), Positives = 67/145 (46%), Gaps = 13/145 (8%)
Query: 322 DLSAHEKHEMSKLQKDIEEKKQENAE----LIKSQEKLKQRVTELEADCADLHEQV---D 374
S + E+ + K+ + + + L+ + + +QR+ ELE D L ++ D
Sbjct: 181 RHSTEKTEELEEQHKEAQSSSESMSAERNALLAQRAENQQRILELEQDIQTLTQKKQEND 240
Query: 375 AALGAEEMVQ-QLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVE 433
L + ++ +L K EL+ + K + D E ++ LQ + +++ +L+ E
Sbjct: 241 RVLEGTQDIEAELERMKGELKQRLKKMTIQRRDEETERI---DLQLENEQLHEDLRTLQE 297
Query: 434 MARSATRE--VIREKEAALESLADR 456
S+ ++ ++ E+ A+L SL D
Sbjct: 298 RLESSQQKAGLLGEELASLGSLRDH 322
Score = 30.0 bits (67), Expect = 4.2
Identities = 27/150 (18%), Positives = 61/150 (40%), Gaps = 18/150 (12%)
Query: 334 LQKDIEEKKQENAELIKSQEKLKQRVTELEA--------------DCADLHEQVDAALGA 379
LQ +E ++E +L+K L+ V+++ + +L EQ A +
Sbjct: 141 LQNQLEGCQRERNDLMKKFLALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQSS 200
Query: 380 EEMVQQ----LSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMA 435
E + L Q+ E + + + ++I L + +D++ E ++IE EL+
Sbjct: 201 SESMSAERNALLAQRAENQQRILELEQDIQTLTQKKQENDRVLEGTQDIEAELERMKGEL 260
Query: 436 RSATREVIREKEAALESLADRELTIVKFRE 465
+ +++ ++ D +L + E
Sbjct: 261 KQRLKKMTIQRRDEETERIDLQLENEQLHE 290
>gnl|CDD|218661 pfam05622, HOOK, HOOK protein. This family consists of several
HOOK1, 2 and 3 proteins from different eukaryotic
organisms. The different members of the human gene
family are HOOK1, HOOK2 and HOOK3. Different domains
have been identified in the three human HOOK proteins,
and it was demonstrated that the highly conserved
NH2-domain mediates attachment to microtubules, whereas
the central coiled-coil motif mediates homodimerisation
and the more divergent C-terminal domains are involved
in binding to specific organelles (organelle-binding
domains). It has been demonstrated that endogenous HOOK3
binds to Golgi membranes, whereas both HOOK1 and HOOK2
are localised to discrete but unidentified cellular
structures. In mice the Hook1 gene is predominantly
expressed in the testis. Hook1 function is necessary for
the correct positioning of microtubular structures
within the haploid germ cell. Disruption of Hook1
function in mice causes abnormal sperm head shape and
fragile attachment of the flagellum to the sperm head.
Length = 713
Score = 32.5 bits (74), Expect = 0.85
Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 4 EIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLD 63
E+ +L+ + D + E DE+ + L +S++ KAK +E+Q + Y++K DL+
Sbjct: 275 ELAELQHRNDELTSLAAESQALKDEIDV-LRESSD-KAKKLEAQVET----YKKKLEDLN 328
Query: 64 EMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEM 123
+++ Q+ E A M++ L+ EL+K + + K +L L +E
Sbjct: 329 DLRRQVKLLEERNAMYMQNTVQLEEELKKANAARGQLETYKRQVQEL-----HAKLSEES 383
Query: 124 AEERAETLQVELDLAKEKIEELT 146
+A+ L+ E +EK+E L
Sbjct: 384 K--KADKLEFEYKRLEEKLEALQ 404
Score = 30.5 bits (69), Expect = 3.7
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 334 LQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQL 386
LQ +E+ ++EN L +++ + + ELE + A+L + D Q L
Sbjct: 244 LQSQLEQLQEENFRLEAARDDYRIKCEELEKELAELQHRNDELTSLAAESQAL 296
>gnl|CDD|235026 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional.
Length = 188
Score = 31.5 bits (72), Expect = 0.91
Identities = 25/98 (25%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 336 KDIEEKKQENAELIKS--QEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLEL 393
+DI ++ + A I++ E+ ++ + E EAD ++ E +A AE ++QL Q+L
Sbjct: 8 EDIRDEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAE--AEREIEQLREQELSS 65
Query: 394 EDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEE 431
L +K+ E L+ V +Q++++ ++ + +EE
Sbjct: 66 AKLEAKRERLNARKEVLEDVRNQVEDEIASLDGDKREE 103
>gnl|CDD|225887 COG3351, FlaD, Putative archaeal flagellar protein D/E [Cell
motility and secretion].
Length = 214
Score = 31.4 bits (71), Expect = 0.96
Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 13/123 (10%)
Query: 397 VSKQAEEIVDLEAL------QVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAAL 450
+ + E+I +L ++V + + + E L E+V+ E + L
Sbjct: 20 LEELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMSEKL 79
Query: 451 ESLADRELTIVKFRELVIREKEAALESLADRELTI-VKFRELNSLDEKVSTENIEKCVTY 509
+ A T + EK+A LE + + ++I V + L L ++ +N + Y
Sbjct: 80 KEPAQMSSTSEE------EEKKAKLEEIPEDVVSIMVALKWLEFLLDRGGPKNTLDVLDY 133
Query: 510 FNT 512
+ +
Sbjct: 134 YES 136
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein. This domain is found
in cell division proteins which are required for
kinetochore-spindle association.
Length = 312
Score = 31.9 bits (73), Expect = 0.98
Identities = 27/141 (19%), Positives = 57/141 (40%), Gaps = 24/141 (17%)
Query: 59 TRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMT 118
D + +L+ K K+ + + L+ EL +LKQ + E + D
Sbjct: 157 KEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDR-------- 208
Query: 119 LDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLE 178
A+E+ + L E+ + +K+EEL +++ +++ IE + + +L
Sbjct: 209 -----AKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTN-----------KKSELN 252
Query: 179 QQNMRLRETLVRLRDLSAHEI 199
+ + L + R + EI
Sbjct: 253 TEIAEAEKKLEQCRGFTFKEI 273
>gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III
C-methyltransferase; Provisional.
Length = 390
Score = 31.6 bits (72), Expect = 1.2
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 356 KQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSD 415
KQ+ A L Q+ A + + QK ELE ++ +QA +AL +
Sbjct: 59 KQQAQNQTATNDALANQLTA------LQKAQESQKQELEGILKQQA------KALDQANR 106
Query: 416 QLQEDAKEIEIELKEEV 432
Q AK+++ EL+++V
Sbjct: 107 QQAALAKQLD-ELQQKV 122
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 32.0 bits (73), Expect = 1.2
Identities = 37/168 (22%), Positives = 62/168 (36%), Gaps = 7/168 (4%)
Query: 322 DLSAHEKHEMSKLQKDIEEKKQENAELIKSQEK-LKQRVTELEADCADLHEQVDAALGAE 380
D +A+E +LQ+ EE Q K E+ L Q ELE E A A
Sbjct: 597 DYAANETELRERLQQ-AEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQAR 655
Query: 381 EMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVS-----DQLQEDAKEIEIELKEEVEMA 435
+Q+L ++ L+D + E Q+ QL E + LK++
Sbjct: 656 LDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFREL 715
Query: 436 RSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADREL 483
R+ + E L++ + ++ + + L+ DREL
Sbjct: 716 RTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDREL 763
>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter
4; solute-binding domain. NTT4 (also called XT1)
transports the neutral amino acids, proline, glycine,
leucine, and alanine, and may play an important role in
synaptic transmission. Human NTT4 is encoded by the
SLC6A17 gene. NTT4 is specifically expressed in the
nervous system, in synaptic vesicles of glutamatergic
and GABAergic neurons. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 589
Score = 31.8 bits (72), Expect = 1.3
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 484 TIVKFREL----NSLDEKVSTENIEKCVTYFNTF---YPVLFPDTKFSHVGHLLMDYVKI 536
T+V F L N ++EK EN EK + Y NT + ++ P FSH+ DY ++
Sbjct: 289 TLVVFAVLGFKANIMNEKCVVENAEKILGYLNTNVLSHDLIPPHVNFSHL--TTKDYAEM 346
>gnl|CDD|234799 PRK00578, prfB, peptide chain release factor 2; Validated.
Length = 367
Score = 31.4 bits (72), Expect = 1.3
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 24/122 (19%)
Query: 36 SAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQ------SAEF-----KA-KIMESQ 83
E ++ + R D+D +K +L++ +F +A K+ +
Sbjct: 2 INEISERLKDLDEKLENIR---GVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKEL 58
Query: 84 AGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIE 143
+ LK +L+ L+ E ++ DL E LE+ ++E EE + EL ++K+
Sbjct: 59 SSLKAKLDTLE-------ELRQRLDDLEELLEL--AEEEDDEETLAEAEAELKALEKKLA 109
Query: 144 EL 145
L
Sbjct: 110 AL 111
>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family.
Members of this protein family are homologs of ClpB, an
ATPase associated with chaperone-related functions.
These ClpB homologs, designated ClpV1, are a key
component of the bacterial pathogenicity-associated type
VI secretion system [Protein fate, Protein and peptide
secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 852
Score = 31.8 bits (73), Expect = 1.5
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Query: 380 EEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQ---LQEDAKEIEIELKEEVEMAR 436
E++ ++++ +LEL+ L + A E L + + L+ + +E ++E E+
Sbjct: 422 EDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKELV- 480
Query: 437 SATREVIREKEAALESLADRELTIVKFRELVIREKEAALESL 478
E I A LE+ AD + E EAAL S
Sbjct: 481 ----EAILALRAELEADADAPADDDAALRAQLAELEAALASA 518
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 31.3 bits (72), Expect = 1.8
Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 332 SKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAAL-GAEEMVQQLSVQK 390
+L++++E+K +E L+K EKLK+ ELE L E+ D L AE+ QQ +++
Sbjct: 526 EELERELEQKAEEAEALLKEAEKLKE---ELEEKKEKLQEEEDKLLEEAEKEAQQA-IKE 581
Query: 391 LELE-DLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVE 433
+ E D + K+ ++ V + +L E K + +++ +
Sbjct: 582 AKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEK 625
Score = 30.2 bits (69), Expect = 4.3
Identities = 18/95 (18%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 54 RYREKTRDLDEMKIQLDQ-SAEFKAKIMESQAGLKRELEKLKQEKQEAV-EAKEDTADLV 111
+K + + + + ++ E + K + Q + LE+ ++E Q+A+ EAK++ +++
Sbjct: 531 ELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEII 590
Query: 112 ETLEMMTLDK--EMAEERAETLQVELDLAKEKIEE 144
+ L + + + L+ A EK E+
Sbjct: 591 KELRQLQKGGYASVKAHELIEARKRLNKANEKKEK 625
Score = 29.0 bits (66), Expect = 9.8
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 380 EEMVQQLSVQKLELE------DLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVE 433
E++ L + ELE + + K+AE++ E L+ ++LQE+ ++ E ++E +
Sbjct: 519 NELIASLEELERELEQKAEEAEALLKEAEKL--KEELEEKKEKLQEEEDKLLEEAEKEAQ 576
Query: 434 MARSATREVIREKEAALESLADRELTIVKFREL 466
A ++ E L L VK EL
Sbjct: 577 QAIKEAKKEADEIIKELRQLQKGGYASVKAHEL 609
>gnl|CDD|224849 COG1938, COG1938, Archaeal enzymes of ATP-grasp superfamily
[General function prediction only].
Length = 244
Score = 30.8 bits (70), Expect = 1.8
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 410 LQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKE 447
L V +D+L+++A+EIE +L++ E V RE+E
Sbjct: 202 LNVDTDKLEKEAEEIEEQLEKLAEQLEKEEERVEREEE 239
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 30.0 bits (68), Expect = 2.0
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 401 AEEIVDLEALQVVSDQLQEDAKEIEIELKEEV-EMARSATREVIREKEAALESL-ADREL 458
A+++ + E L+ + L + ++ E +E+ E+ A +E + E + E
Sbjct: 43 ADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELER 102
Query: 459 TIVKFRELVIREKEAALESL 478
+ EKE ALE L
Sbjct: 103 IKEAAEAEIEAEKERALEEL 122
>gnl|CDD|180481 PRK06231, PRK06231, F0F1 ATP synthase subunit B; Validated.
Length = 205
Score = 30.6 bits (69), Expect = 2.1
Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 5/137 (3%)
Query: 335 QKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELE 394
Q+ + ++K+ I +LKQ+ +L + HE +A A+E++ Q + + L+L+
Sbjct: 74 QRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHE--NALAQAKEIIDQANYEALQLK 131
Query: 395 DLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLA 454
+ K+A +L Q + +E + E KE VE+A A E+I++K ++
Sbjct: 132 SELEKEANRQANLIIFQARQEIEKERRELKEQLQKESVELAMLAAEELIKKK---VDRED 188
Query: 455 DRELTIVKFRELVIREK 471
D +L REL EK
Sbjct: 189 DDKLVDEFIRELEANEK 205
>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional.
Length = 193
Score = 30.3 bits (69), Expect = 2.2
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 371 EQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKE 430
EQV + AE QQ + ELED + + I +LEA + Q + ++ + +
Sbjct: 11 EQVSEEIEAEV-EQQEEADEAELEDELDEADARIAELEAQL---AEAQAEERDSVLRARA 66
Query: 431 EVE-MARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELTIVK 487
EVE + R A ++V + + ALE A+ L VI E AL+ AD+E +K
Sbjct: 67 EVENIRRRAEQDVEKAHKFALEKFANELLP-------VIDNLERALQ-AADKENEALK 116
>gnl|CDD|236848 PRK11107, PRK11107, hybrid sensory histidine kinase BarA;
Provisional.
Length = 919
Score = 31.0 bits (71), Expect = 2.2
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 11/38 (28%)
Query: 107 TADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEE 144
T+DL ETLE M E VELDLAK++ +E
Sbjct: 262 TSDLRETLEQM-----------EIQNVELDLAKKRAQE 288
>gnl|CDD|226400 COG3883, COG3883, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 265
Score = 30.5 bits (69), Expect = 2.2
Identities = 19/98 (19%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 345 NAELIKSQEKLKQRVTELEADCADLHEQVDAALG-AEEMVQQLSVQKLELEDLVSKQAEE 403
+ ++++ Q++ K+ + E +A D E + A E + L+ QK E L++ A +
Sbjct: 146 DKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAK 205
Query: 404 IVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATRE 441
+ ++ + A+ E ++ A++A +E
Sbjct: 206 EASALGEKAALEEQKALAEAAAAEAAKQEAAAKAAAQE 243
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 30.4 bits (69), Expect = 2.3
Identities = 25/150 (16%), Positives = 66/150 (44%), Gaps = 6/150 (4%)
Query: 318 SRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVD--- 374
RL + + K + ++E + L E L+ +V++LE++ ++ E++
Sbjct: 20 DRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAE 79
Query: 375 ---AALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEE 431
+A+ E ++ L+++ ++ ++ +E+ +L ++ ED KE L++
Sbjct: 80 EKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKN 139
Query: 432 VEMARSATREVIREKEAALESLADRELTIV 461
+ A + E + E + L+ + +
Sbjct: 140 LAEAEARLEEEVAEIREEGQELSSKREELK 169
>gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA. During
the bacterial cell cycle, the tubulin-like cell-division
protein FtsZ polymerises into a ring structure that
establishes the location of the nascent division site.
EzrA modulates the frequency and position of FtsZ ring
formation.
Length = 559
Score = 31.0 bits (71), Expect = 2.3
Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 331 MSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQV--------DAALGAEEM 382
+ +++DIE+ +E EL +S+EK ++ V EL+ +L + + A E+
Sbjct: 110 LDTIEEDIEQILEELNELKESEEKNRKEVEELKDKYRELRKTLLAKSFSYGPALDELEKQ 169
Query: 383 VQQLSVQKLELEDLVSK----QAEEIVDLEALQVVSDQLQEDAKEI 424
+ +L + + +L +A E+ L L+ +D L++ +EI
Sbjct: 170 LDELEEEFEQFVELTESGDYLEAREV--LLKLEEETDALEQKMEEI 213
>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200). This
family is found in eukaryotes. It is a coiled-coil
domain of unknwon function.
Length = 126
Score = 29.5 bits (67), Expect = 2.5
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 54 RYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVET 113
R EK R+++E+++ LD E + E + ELEK ++E QE++ + E
Sbjct: 1 RLLEKRREMEEVQLALDAKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENE- 59
Query: 114 LEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEK 158
+ +K+ EE+ + E E+I+EL ++E +KA+IEK
Sbjct: 60 AKRRRAEKKAEEEKKLRKEKE-----EEIKELKAELEELKAEIEK 99
Score = 28.3 bits (64), Expect = 5.7
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 7/116 (6%)
Query: 18 KYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKA 77
+ EK R+++E+++ LD E + E RE+ + E ++Q + +F
Sbjct: 1 RLLEKRREMEEVQLALDAKREEFERREELLKQ------REEELEKKEEELQ-ESLIKFDK 53
Query: 78 KIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQV 133
+ E++A +R +K ++EK+ E +E+ +L LE + + E EE+ E Q
Sbjct: 54 FLKENEAKRRRAEKKAEEEKKLRKEKEEEIKELKAELEELKAEIEKLEEKLEEYQP 109
>gnl|CDD|216295 pfam01093, Clusterin, Clusterin.
Length = 434
Score = 30.8 bits (70), Expect = 2.5
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 64 EMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDT 107
+MK ++++ E +M LEK K+EK+EA++ +
Sbjct: 27 QMKTLMERTEEEHKNLM-------STLEKTKKEKEEALKLANEV 63
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups.
Length = 977
Score = 31.0 bits (70), Expect = 2.6
Identities = 38/169 (22%), Positives = 80/169 (47%), Gaps = 16/169 (9%)
Query: 1 MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSA-EFKAKIMESQA---ASSLFRYR 56
+K +IQ LK +L + + E+ L++ + LD S E ++K + +Q S +Y
Sbjct: 238 LKDDIQFLKAELIEVA-ETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYD 296
Query: 57 ---EKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVET 113
EK +L ++ + E A +++ L+ +++KL+ +EA +K +
Sbjct: 297 CWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSS----YK 352
Query: 114 LEMMTLDKEMAEERAETLQVEL----DLAKEKIEELTLDIELMKADIEK 158
+E++ ++ EER + E+ L +E I+E + +K + +K
Sbjct: 353 VELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKK 401
>gnl|CDD|225471 COG2919, COG2919, Septum formation initiator [Cell division and
chromosome partitioning].
Length = 117
Score = 29.2 bits (66), Expect = 2.6
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 328 KHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALG 378
++ +LQ+ I ++ E +L L+ + +L+ + E+ + LG
Sbjct: 49 AADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIEERARSELG 99
>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 257 to 277 amino acids in length. This domain is
found associated with pfam00004. This domain has a
conserved LER sequence motif.
Length = 276
Score = 30.5 bits (69), Expect = 2.8
Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 16/156 (10%)
Query: 335 QKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHE--------QVDAALGAEEMVQQL 386
Q ++E K +E + + RV E + Q L + ++L
Sbjct: 65 QAELEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQDELARKRYQKEL 124
Query: 387 SVQKLELEDLVSKQAEEIVDLEALQ-VVSDQLQEDAKEI---EIELKEEVEMARSATREV 442
Q+ + E+L+ Q E ++ EA++ +++ E +E E EL+ E A+
Sbjct: 125 EQQRRQNEELLKMQEESVLRQEAMRRATEEEILEMRRETIEEEAELERENIRAKIEAEAR 184
Query: 443 IREKEAALESLADRELTIVKFRELVIREKEAALESL 478
R KE +RE+ +K E E+E LES+
Sbjct: 185 GRAKEERENEDINREMLKLKANE----ERETVLESI 216
>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1. This model
describes peptide chain release factor 1 (PrfA, RF-1),
and excludes the related peptide chain release factor 2
(PrfB, RF-2). RF-1 helps recognize and terminate
translation at UAA and UAG stop codons. The
mitochondrial release factors are prfA-like, although
not included above the trusted cutoff for this model.
RF-1 does not have a translational frameshift [Protein
synthesis, Translation factors].
Length = 360
Score = 30.4 bits (69), Expect = 2.8
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Query: 39 FKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQ 98
K ++E S L RY E L + ++ DQ + + E +LE++ +
Sbjct: 1 MKPSLLEK-LESLLERYEELEALLSDPEVISDQ-DKLRKLSKE-----YSQLEEIVDCYR 53
Query: 99 EAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELM 152
E +A+ED + E LE D EM E + EL+ +EKIEEL ++++
Sbjct: 54 EYQQAQEDIKEAKEILE--ESDPEMREM----AKEELEELEEKIEELEEQLKVL 101
Score = 30.4 bits (69), Expect = 3.0
Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 348 LIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDL 407
L++ E L +R ELEA +D E + Q ++KL E Q EEIVD
Sbjct: 5 LLEKLESLLERYEELEALLSD----------PEVISDQDKLRKLSKE---YSQLEEIVDC 51
Query: 408 -EALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADR 456
Q Q QED KE + L+E R +E + E E +E L ++
Sbjct: 52 YREYQ----QAQEDIKEAKEILEESDPEMREMAKEELEELEEKIEELEEQ 97
Score = 30.0 bits (68), Expect = 3.8
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 17/122 (13%)
Query: 8 LKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIME-SQAASSLFRYREKTRDLDEMK 66
L EKL+++ +Y E L + ++ DQ + + E SQ + YRE + +++K
Sbjct: 5 LLEKLESLLERYEELEALLSDPEVISDQ-DKLRKLSKEYSQLEEIVDCYREYQQAQEDIK 63
Query: 67 IQLDQSAEFKAKIMESQAGLKRELEKLKQE-KQEAVEAKEDTADLVETLEMMTLDKEMAE 125
E++ L+ ++++ K+E E +E +L E L+++ L K+ +
Sbjct: 64 --------------EAKEILEESDPEMREMAKEELEELEEKIEELEEQLKVLLLPKDPND 109
Query: 126 ER 127
E+
Sbjct: 110 EK 111
>gnl|CDD|235999 PRK07353, PRK07353, F0F1 ATP synthase subunit B'; Validated.
Length = 140
Score = 29.2 bits (66), Expect = 2.9
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 421 AKEIEIELKEEVEMARSATREVIREKEAALESLADREL---------TIVKFRELVIREK 471
A+++E + ++++ AR + VI E EA + LA L + K R + ++K
Sbjct: 55 AEKLEAQYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEKARREIEQQK 114
Query: 472 EAALESL 478
+AAL L
Sbjct: 115 QAALAQL 121
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 30.2 bits (68), Expect = 2.9
Identities = 20/97 (20%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 55 YREKTRDL---DEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLV 111
Y+++ +D+ ++ K +Q +A E + +R L K+E+++ + +++ L+
Sbjct: 125 YQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQALL 184
Query: 112 ETLEMMTLDKE--MAEERAETLQVELDLAKEKIEELT 146
+ LE TL +A+ + ++++E+ + K K E+
Sbjct: 185 DELETSTLPAAELIAQHKKNSVKLEMQVEKPKPEKPN 221
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 30.4 bits (68), Expect = 3.0
Identities = 22/121 (18%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
Query: 4 EIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLD 63
+ ++K D +K RD K Q ++ A + + + R+++
Sbjct: 228 DADKAQQKADF-AQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQV--AENQKREIE 284
Query: 64 EMKIQLDQSAEFKAKIMESQA-GLKREL-EKLKQEKQEAVEAKEDTADLVETLEMMTLDK 121
+ +I++ ++ E K + +A LK+E K+ + + +EA++ + E L+
Sbjct: 285 KAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPVAEDLQKTKPQV 344
Query: 122 E 122
E
Sbjct: 345 E 345
>gnl|CDD|219784 pfam08302, tRNA_lig_CPD, Fungal tRNA ligase phosphodiesterase
domain. This domain is found in fungal tRNA ligases and
has cyclic phosphodiesterase activity. tRNA ligases are
enzymes required for the splicing of precursor tRNA
molecules containing introns.
Length = 259
Score = 30.0 bits (68), Expect = 3.1
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 580 GSTENIEKCVTYFNTFYPVLFPGHPS 605
S EN+E V + YP L P PS
Sbjct: 1 SSRENLETVVNELHKQYPKLVPKVPS 26
>gnl|CDD|220173 pfam09311, Rab5-bind, Rabaptin-like protein. Members of this
family are predominantly found in Rabaptin and allow for
binding to the GTPase Rab5. This interaction is
necessary and sufficient for Rab5-dependent recruitment
of Rabaptin5 to early endosomal membranes.
Length = 180
Score = 29.7 bits (67), Expect = 3.1
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 13/133 (9%)
Query: 346 AELIKSQEKLKQRVTELEADCADL---HEQVDAALGA-EEMVQQLSVQKLELEDLVSKQA 401
EL S++KL+ ++ L+ + L L A E+ V QL + L+ L ++
Sbjct: 18 QELEASRQKLRAQLRRLQQENQWLRGELALTQQELQASEQEVIQLPEEVKHLQFLCLQRR 77
Query: 402 EEIVDLEALQVVSDQLQEDAKEIEIELKE-----EVEMARSATREVIR-EKEAALESLAD 455
E +L + S+ L+E+ K LKE E E+A I+ EK+ SL +
Sbjct: 78 E---ELIESRTASEHLEEELKSEIDPLKELKPNLEEELAAEIELPQIQSEKDQLQASLYE 134
Query: 456 RELTIVKFRELVI 468
+ LVI
Sbjct: 135 IPARLRTLHNLVI 147
>gnl|CDD|184048 PRK13428, PRK13428, F0F1 ATP synthase subunit delta; Provisional.
Length = 445
Score = 30.5 bits (69), Expect = 3.1
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 63 DEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAV-EAKEDTADLVETLE 115
D ++ QL +SA ++ E+ + +E K E V EA+ED + E L
Sbjct: 35 DTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLR 88
>gnl|CDD|213754 TIGR02971, heterocyst_DevB, ABC exporter membrane fusion protein,
DevB family. Members of this protein family are found
mostly in the Cyanobacteria, but also in the
Planctomycetes. DevB from Anabaena sp. strain PCC 7120
is partially characterized as a membrane fusion protein
of the DevBCA ABC exporter, probably a glycolipid
exporter, required for heterocyst formation. Most
Cyanobacteria have one member only, but Nostoc sp. PCC
7120 has seven members.
Length = 327
Score = 30.2 bits (68), Expect = 3.2
Identities = 36/155 (23%), Positives = 59/155 (38%), Gaps = 27/155 (17%)
Query: 19 YREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAK 78
E+T +LD + QLD+ AK +Q R K ++ + + FK
Sbjct: 50 RPERTAELDVARTQLDE-----AKARLAQV-----RAGAKKGEIAAQRAARAAAKLFKD- 98
Query: 79 IMESQAGLKR---ELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAE------ 129
+ QA L R ELE ++E D A L+ L AEE E
Sbjct: 99 VAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRTAEEELEEALASR 158
Query: 130 -----TLQVELDLAKEKIEELTLDIELMKADIEKS 159
+ L E++ E D++L +A+++ +
Sbjct: 159 SEQIDGARAALASLAEEVRE--TDVDLAQAEVKSA 191
Score = 29.4 bits (66), Expect = 6.0
Identities = 36/153 (23%), Positives = 56/153 (36%), Gaps = 17/153 (11%)
Query: 335 QKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELE 394
Q KK E A ++ + ++ A A L+ L AE Q V +
Sbjct: 73 QVRAGAKKGEIAAQRAARAA-AKLFKDVAAQQATLN-----RLEAELETAQREVDRYR-- 124
Query: 395 DLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLA 454
L A DL++ + +E+ +E E+++ AR+A + E LA
Sbjct: 125 SLFRDGAVSASDLDSKALKLRTAEEELEEALASRSEQIDGARAALASLAEEVRETDVDLA 184
Query: 455 DRELTIVKFRELVIREKEAALESLADRELTIVK 487
E V EA ++ A ELT VK
Sbjct: 185 QAE---------VKSALEAVQQAEALLELTYVK 208
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 30.4 bits (69), Expect = 3.3
Identities = 21/118 (17%), Positives = 48/118 (40%), Gaps = 16/118 (13%)
Query: 22 KTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIME 81
KT + K+Q ++ K ++ + + + ++ D + K+K
Sbjct: 273 KTHEKSMEKLQ-EKIKALKYQLKRLK------------KMILLFEMISDLKRKLKSKFER 319
Query: 82 SQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAK 139
L E+++ K+EK++ + K+ L E +E + + ++ E V L +K
Sbjct: 320 DNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQA---TDKEENKTVALGTSK 374
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 30.4 bits (69), Expect = 3.3
Identities = 17/80 (21%), Positives = 43/80 (53%)
Query: 330 EMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQ 389
+ KL++ +E ++EN+EL + E+LK+ + +LE++ +V + + ++ +
Sbjct: 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRR 482
Query: 390 KLELEDLVSKQAEEIVDLEA 409
LE + ++ + + +LE
Sbjct: 483 IERLEKELEEKKKRVEELER 502
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 30.4 bits (69), Expect = 3.5
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Query: 5 IQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDE 64
I +K+KL ++ + +DE++ +D+ E K++E + S +
Sbjct: 301 ITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQ--------S 352
Query: 65 MKIQLDQSAEFKAKIMESQAGL---KRELEKLKQEKQEAVEAKED 106
+ +D++ + KA I E QA EL KL+ E + V+ K +
Sbjct: 353 LITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSE 397
>gnl|CDD|178768 PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha; Provisional.
Length = 762
Score = 30.2 bits (68), Expect = 3.7
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 65 MKIQLDQSAEF-KAK-IMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKE 122
+K +LD EF +AK + E K + EKLK E + + D ++ E +M L E
Sbjct: 533 LKYKLDMLNEFSRAKALSE----KKSKAEKLKAEINKKFKEVMDRPEIKE--KMEALKAE 586
Query: 123 MAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCD 161
+A A + D KEK+E++ +IEL A + KS
Sbjct: 587 VASSGASSGDELDDDLKEKVEKMKKEIELELAGVLKSMG 625
>gnl|CDD|237391 PRK13473, PRK13473, gamma-aminobutyraldehyde dehydrogenase;
Provisional.
Length = 475
Score = 30.3 bits (69), Expect = 3.9
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 359 VTEL-EADCADLHEQVDAALGAEEMVQQLSVQK-----LELEDLVSKQAEEIVDLEALQ 411
+ E+ EA A + V AA A Q + ++ L+L D + + A+E LE+L
Sbjct: 30 LAEIAEASAAQVDAAVAAADAAFPEWSQTTPKERAEALLKLADAIEENADEFARLESLN 88
>gnl|CDD|227250 COG4913, COG4913, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 1104
Score = 30.4 bits (68), Expect = 3.9
Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 18/167 (10%)
Query: 313 KNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQ 372
K + ++ +R + + SK++ E + + + +KQ V H
Sbjct: 297 KEEQETLVRQFTVEQTQAKSKVESAKIETDRAREMETLAHDNVKQIV-------GAQHGI 349
Query: 373 VDAAL-GAEEMVQQLSVQKLELEDLVSK-------QAEEIVDL-EALQVVSDQLQEDAKE 423
+ A GA + + +S + L+ LV AEE+++L A ++ D+ +
Sbjct: 350 LSAKREGAVDKRRTISTARAGLDALVKGLGGAAPESAEELLELNNAARLTVDEYPAAREA 409
Query: 424 IEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIRE 470
+E + VE R+ + + + L SL+ I ++R L +RE
Sbjct: 410 LESAGQRNVE-DRTRAVDEFKAADQELSSLSKGSSNI-EYRLLQVRE 454
Score = 29.6 bits (66), Expect = 6.6
Identities = 28/166 (16%), Positives = 64/166 (38%), Gaps = 14/166 (8%)
Query: 317 DSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLK--QRVTELEADCADLHEQVD 374
D+++ L K +S+ + + ++ E IK QE+ + L DL
Sbjct: 615 DAKVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHIQALNFASIDLPSAQR 674
Query: 375 AALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEM 434
+ +++L+ + ++ ++K A + + Q V ++ + LK++++
Sbjct: 675 QIAELQARLERLTHTQSDIA--IAKAALD--AAQTRQKVLERQYQQEVTECAGLKKDLKR 730
Query: 435 ARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLAD 480
A +R+V S+A + +T + A E D
Sbjct: 731 AAMLSRKV--------HSIAKQGMTGALQALGAAHFPQVAPEQHDD 768
>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau;
Validated.
Length = 725
Score = 30.2 bits (68), Expect = 3.9
Identities = 48/315 (15%), Positives = 97/315 (30%), Gaps = 30/315 (9%)
Query: 61 DLDEMKIQLDQSAEFKAKIMESQAGLKR--------ELEKLK-QEKQEAVEAKEDTADLV 111
DL+++KI D + +F + + LK E+ +K E E E+
Sbjct: 310 DLEKLKIDDDFAYKFIEILFDLLKDLKISDNPNDTLEILIIKLLALSELEEEDENEIKFK 369
Query: 112 ETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSH 171
+ E + ++ E++ E + K E + + K + + S
Sbjct: 370 KIEENSIDNLDIKEKKIENENDIEGKSDTKNLEEGFETKDNKNKNSSFINKTENILTNSP 429
Query: 172 YQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEI-FNNNKFDSRLRDL 230
+ + LE+ + I N + + I + D +
Sbjct: 430 LKDELLEK---------------TTEIINIENPQEFEFGQIGNDIISTEIAQLDENQNLI 474
Query: 231 SAHEIFNNNKFDSRLYDLSAHEIFNNKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHE 290
E N F + + ++I N N ++ + + NK F + +
Sbjct: 475 DTGEFDLENNFSNSFNPENGNKIDENIN--ETFDTSTISANLSENKTNFAQSFNNKDTNL 532
Query: 291 IFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIK 350
I + D ++ + N K ++ LS E + L Q E K
Sbjct: 533 INSEIPIDLIKDTITINNSQKNVKKNGNK-DYLSVEEVINLIMLAIKFH--SQNQVEYKK 589
Query: 351 SQEKLKQRVTELEAD 365
+ + + E D
Sbjct: 590 LVQNWNKNLPLFEYD 604
>gnl|CDD|221059 pfam11285, DUF3086, Protein of unknown function (DUF3086). This
family of proteins with unknown function appears to be
restricted to Cyanobacteria.
Length = 283
Score = 30.0 bits (68), Expect = 4.1
Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 26/116 (22%)
Query: 336 KDIEEKKQENAELIKSQEKLKQRVTELEADCA--------DLHEQV------------DA 375
KD+E+++Q L EKL++R ++E + + +V D
Sbjct: 7 KDLEQRRQA---LEIEIEKLERRKEQIEQELRTSFAGQSDAIARRVKGFQDYLVGALQDL 63
Query: 376 ALGAEEM---VQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIEL 428
A AE++ Q + VQ L++ + A +D + D + I L
Sbjct: 64 AQSAEQLELVPQPVVVQPSPLDEQATPPAAAEKPASTPPAAADTFKPDERLIRQLL 119
>gnl|CDD|200948 pfam00038, Filament, Intermediate filament protein.
Length = 312
Score = 29.9 bits (68), Expect = 4.1
Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 25/154 (16%)
Query: 2 KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRD 61
K ++Q+L ++L + Y +K R L++ Q+ E +AKI E + S E +R
Sbjct: 3 KEQMQNLNDRLAS----YIDKVRFLEQ------QNKELEAKIEELRQKKS----AEPSRL 48
Query: 62 -------LDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQ----EKQEAVEAKEDTADL 110
+ E++ QLD+ +A++ L+ E ++ E A+ D L
Sbjct: 49 YSLYEQEIRELRKQLDELTNERARLQLEIDNLRLAAEDFREKYEDELNLRQSAENDIVGL 108
Query: 111 VETLEMMTLDKEMAEERAETLQVELDLAKEKIEE 144
+ L+ TL + E + E+LQ EL K+ EE
Sbjct: 109 RKDLDEATLARVDLEMKIESLQEELAFLKKNHEE 142
>gnl|CDD|182988 PRK11133, serB, phosphoserine phosphatase; Provisional.
Length = 322
Score = 29.9 bits (68), Expect = 4.4
Identities = 30/116 (25%), Positives = 44/116 (37%), Gaps = 39/116 (33%)
Query: 353 EKLKQRVTELEADCADLHEQVDAAL----GAEEMVQQLSV-------------------- 388
L+QRV L+ A++ +QV L G E+V +L
Sbjct: 156 ASLRQRVATLKGADANILQQVRENLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLR 215
Query: 389 QKLELEDLVSKQAE------------EIVDLEALQVVSDQLQEDAKEIEIELKEEV 432
KL L+ V+ + E +IVD Q +D L A+E EI L + V
Sbjct: 216 DKLRLDAAVANELEIMDGKLTGNVLGDIVDA---QYKADTLTRLAQEYEIPLAQTV 268
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome
partitioning].
Length = 1480
Score = 30.2 bits (68), Expect = 4.6
Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 12/130 (9%)
Query: 351 SQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEAL 410
Q L ++V L ++L +++ AE ++ K+ + +D E L
Sbjct: 507 DQRHLAEQVQPLRMRLSELEQRLRQQQSAERLLADF-----------CKRQGKNLDAEEL 555
Query: 411 QVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIRE 470
+ + +L+ + + + E R A R+ + ++ ++SL R + + + +
Sbjct: 556 EALHQELEALIESLSDSVSNARE-QRMALRQEQEQLQSRIQSLMQRAPVWLAAQNALEQL 614
Query: 471 KEAALESLAD 480
E + E D
Sbjct: 615 SEQSGEEFTD 624
Score = 29.1 bits (65), Expect = 9.3
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 5/118 (4%)
Query: 320 LRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTE-LEADCADLHEQVDAALG 378
R LS HE + + ++ K+ L + +L E L ++ E++D A
Sbjct: 849 ERALSNHENDN-QQQRIQFDQAKEGVTALNRLIPQLNLLADESLADRVEEIRERLDEAQE 907
Query: 379 AEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQ---VVSDQLQEDAKEIEIELKEEVE 433
A +QQ +LE + S + E L+ + Q+Q A++ L E V+
Sbjct: 908 AARFIQQHGNTLSKLEPIASVLQSDPEQFEQLKEDYAQAQQMQRQARQQAFALTEVVQ 965
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 30.0 bits (68), Expect = 4.6
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 315 KFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVD 374
K S + +L A ++ K +KK + E+ K ++LK+ +TEL A L ++
Sbjct: 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQ 100
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 29.9 bits (67), Expect = 4.8
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 3/153 (1%)
Query: 327 EKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQL 386
E+ K ++ EE K + A QE+LKQ E + +A A+ +Q
Sbjct: 78 EQQRKKKEEQVAEELKPKQAA---EQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQ 134
Query: 387 SVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREK 446
Q + K+AE A + + +AK+ E + E A++ +K
Sbjct: 135 EEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKK 194
Query: 447 EAALESLADRELTIVKFRELVIREKEAALESLA 479
+A E+ A E + EK+A +
Sbjct: 195 KAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEE 227
>gnl|CDD|221757 pfam12761, End3, Actin cytoskeleton-regulatory complex protein
END3. Endocytosis is accomplished through the
sequential recruitment at endocytic sites of proteins
that drive cargo sorting, membrane invagination and
vesicle release. End3p is part of the coat module
protein complex Pan1, along with Pan1p, Sla1p, and
Sla2p. The proteins in this complex are regulated by
phosphorylation events. End3p also regulates the
cortical actin cytoskeleton. The subunits of the Pan1
complex are homologous to mammalian intersectin.
Length = 193
Score = 29.3 bits (66), Expect = 4.8
Identities = 22/92 (23%), Positives = 42/92 (45%)
Query: 54 RYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVET 113
R R + +L+ + Q +E + + A +KRELE+L + K+ + +
Sbjct: 100 RLRRELAELESKLSKAQQESESRNDAKPNSALVKRELEQLLKYKENQLRELGGRSSNGVN 159
Query: 114 LEMMTLDKEMAEERAETLQVELDLAKEKIEEL 145
L + D + EE+ L+ L KE++ +L
Sbjct: 160 LGSVREDIDSIEEQVTGLEEHLASRKEELAQL 191
>gnl|CDD|218670 pfam05639, Pup, Pup-like protein. This family consists of several
short bacterial proteins formely known as (DUF797). It
was recently shown that Mycobacterium tuberculosis
contains a small protein, Pup (Rv2111c), that is
covalently conjugated to the e-NH2 groups of lysines on
several target proteins (pupylation) such as the malonyl
CoA acyl carrier protein (FabD). Pupylation of FabD was
shown to result in its recruitment to the mycobacterial
proteasome and subsequent degradation analogous to
eukaryotic ubiquitin-conjugated proteins. Searches
recovered Pup orthologs in all major actinobacteria
lineages including the basal bifidobacteria and also
sporadically in certain other bacterial lineages. The
Pup proteins were all between 50-90 residues in length
and a multiple alignment shows that they all contain a
conserved motif with a G [EQ] signature at the
C-terminus. Thus, all of them are suitable for
conjugation via the terminal glutamate or the deamidated
glutamine (as shown in the case of the Mycobacterium
Pup). The conserved globular core of Pup is predicted to
form a bihelical unit with the extreme C-terminal 6-7
residues forming a tail in the extended conformation.
Thus, Pup is structurally unrelated to the ubiquitin
fold and has convergently evolved the function of
protein modifier.
Length = 66
Score = 27.4 bits (61), Expect = 4.9
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 329 HEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAAL--GAEEMVQQL 386
+ Q+D +++E E ++ +R +L D DL +++D L AEE V+
Sbjct: 1 KDTGGGQQDDTRREEEVEETAEATADGAERREKLTEDVDDLLDEIDDVLEENAEEFVRSY 60
Query: 387 SVQK 390
VQK
Sbjct: 61 -VQK 63
>gnl|CDD|234634 PRK00103, PRK00103, rRNA large subunit methyltransferase;
Provisional.
Length = 157
Score = 28.9 bits (66), Expect = 4.9
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 421 AKEIEIELKE--EVEMARSATREVIREKEAA--LESLADRELTIVKFRELVIREKEAALE 476
+ +++EL E + + ++A E I+ KE L +L I L R K+ + E
Sbjct: 28 PRYLKLELIEIPDEKRPKNADAEQIKAKEGERILAALPKGARVIA----LDERGKQLSSE 83
Query: 477 SLADR 481
A
Sbjct: 84 EFAQE 88
>gnl|CDD|233262 TIGR01078, arcA, arginine deiminase. Arginine deiminase is the
first enzyme of the arginine deiminase pathway of
arginine degradation [Energy metabolism, Amino acids and
amines].
Length = 405
Score = 29.7 bits (67), Expect = 5.0
Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 27/111 (24%)
Query: 380 EEMVQQL---SVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMAR 436
++ L ++ L LEDL++ E L + +AKE I+ E + +
Sbjct: 47 DQFANTLRDNGIEVLYLEDLLA---------ETLDL------PEAKEKFID--EFLSESE 89
Query: 437 SATREVIREKEAALESLADRELTI-----VKFRELVIREKEAALESLADRE 482
+ E L+SL REL V EL E + +SL D
Sbjct: 90 ILGLGLKVELRDYLKSLDTRELVEKLMAGVAKNEL--PASEGSEKSLMDLG 138
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 29.9 bits (68), Expect = 5.1
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 369 LHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIEL 428
LH L ++ ++ + +K + + L Q +E+V LE L +L+E +E+E +L
Sbjct: 144 LHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAA---ELEEKQQELEAQL 200
Query: 429 KEEVEMARSATREVI-REKEAALESLADRELT 459
++ E A ++E + KE ++ EL+
Sbjct: 201 EQLQEKAAETSQERKQKRKEITDQAAKRLELS 232
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 29.8 bits (67), Expect = 5.4
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 87 KRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMA----EERAETLQVELDLAKEKI 142
+RELEKL +E+ E E+ E M D+ A E+R E LQ L A
Sbjct: 255 RRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQNLLKKASRSA 314
Query: 143 EEL 145
+ +
Sbjct: 315 DNV 317
>gnl|CDD|144876 pfam01442, Apolipoprotein, Apolipoprotein A1/A4/E domain. These
proteins contain several 22 residue repeats which form a
pair of alpha helices. This family includes:
Apolipoprotein A-I. Apolipoprotein A-IV. Apolipoprotein
E.
Length = 191
Score = 29.1 bits (66), Expect = 5.5
Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 26/144 (18%)
Query: 333 KLQKDIEEKK----QENAELIKSQEKLKQRVTELEADCA----DLHEQVDAALGAEEMVQ 384
+LQKD+E+ + EL + K+ Q + EL A +L ++++ AEE+ +
Sbjct: 42 ELQKDLEDVRARLQPYLDEL---KAKVGQNLEELRQRLAPYAEELRKRLNR--DAEELRR 96
Query: 385 QLSVQKLELEDLVSKQAEEIVDL-------------EALQVVSDQLQEDAKEIEIELKEE 431
+L+ EL D + + E + E L+ + + + A+E + +L E+
Sbjct: 97 KLAPYAEELRDRLRQNVEALRARLGPYVEELRQKLAERLEELKESVGPYAEEYKAQLSEQ 156
Query: 432 VEMARSATREVIREKEAALESLAD 455
VE R + LE A+
Sbjct: 157 VEELREKLEPYAEDLREKLEPYAE 180
Score = 28.3 bits (64), Expect = 8.2
Identities = 24/118 (20%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 1 MKAEIQDLKEKLDTMKIKYREK-TRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKT 59
+ +++L+++L + R++ RD +E++ +L AE + + ++ R +
Sbjct: 65 VGQNLEELRQRLAPYAEELRKRLNRDAEELRRKLAPYAE----ELRDRLRQNVEALRARL 120
Query: 60 R-DLDEMKIQLDQS-AEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLE 115
++E++ +L + E K + K +L + +E +E +E DL E LE
Sbjct: 121 GPYVEELRQKLAERLEELKESVGPYAEEYKAQLSEQVEELREKLE--PYAEDLREKLE 176
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 29.5 bits (66), Expect = 5.8
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 365 DCAD-LHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKE 423
+CAD L E++D+ L E + Q L + Q EI + EAL D+L+++ +
Sbjct: 25 ECADILLERLDSELRDAEKERDTYKQYL---SKLESQNVEISNYEALDSELDELKKEEER 81
Query: 424 IEIELKEEVEMARSATREVIREKEAALESLADREL 458
+ EL EE+E + E + E L + EL
Sbjct: 82 LLDEL-EELEKEDDDLDGELVELQEEKEQLENEEL 115
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 29.7 bits (67), Expect = 5.9
Identities = 38/237 (16%), Positives = 79/237 (33%), Gaps = 40/237 (16%)
Query: 296 KFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKL 355
K + I + E L+++I + + E E+ ++ E L
Sbjct: 39 KLRKLESKIKKLGIPLKDTGGKPDVPPSK-----EFLDLEEEILDLEAEIKEVEENLESL 93
Query: 356 KQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEI------VDLEA 409
++ + ELE L E+ E + +LS ++ + L + ++ ++ E
Sbjct: 94 EKEINELEEWLNVLDEEKSFLDENLEELSELSNLDIDFKYLRGAEGLKLGFVAGVINREK 153
Query: 410 L----QVVSDQLQEDAK--EIEIELKEEVEMA----------RSATREVIREKEAALESL 453
L + + + + EIE L++ + ++++ L +
Sbjct: 154 LEAFERELWRACRGYIRQAEIEEPLEDPKKTVFIIFFVGKEDLDKVKKILDSFGFELYDV 213
Query: 454 ADRELTIVKFRELVIREKEAALESLADRELTIVKFR---------ELNSLDEKVSTE 501
+ E EL I + +E L EL + DE+VS E
Sbjct: 214 PETEGE---RSEL-ISKVNKRIEELQRVLEQTESHLEKVLVKIADELLAWDEQVSKE 266
>gnl|CDD|191973 pfam08232, Striatin, Striatin family. Striatin is an intracellular
protein which has a caveolin-binding motif, a
coiled-coil structure, a calmodulin-binding site, and a
WD (pfam00400) repeat domain. It acts as a scaffold
protein and is involved in signalling pathways.
Length = 133
Score = 28.5 bits (64), Expect = 6.0
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 339 EEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVS 398
E + EN +E LK+R+ LE ++ + Q+ S ++ E E
Sbjct: 40 ERRGLEN-----LKEDLKRRIKMLEYALKQERAKLKKLKYGTDSPQKPSKEEEEEELEED 94
Query: 399 KQAE---EIVDLEALQVVSDQLQEDAKEI 424
E E VD L+ L++ +EI
Sbjct: 95 DDEESNSEKVDESELKKSRLYLRKSLQEI 123
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 29.7 bits (68), Expect = 6.1
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 326 HEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAAL 377
E++ +SK + K ++ LI ++LK+ + LEA+ +L +++ L
Sbjct: 49 AERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELL 100
>gnl|CDD|232785 TIGR00020, prfB, peptide chain release factor 2. In many but not
all taxa, there is a conserved real translational
frameshift at a TGA codon. RF-2 helps terminate
translation at TGA codons and can therefore regulate its
own production by readthrough when RF-2 is insufficient.
There is a PFAM model called "RF-1" for the superfamily
of RF-1, RF-2, mitochondrial, RF-H, etc [Protein
synthesis, Translation factors].
Length = 364
Score = 29.4 bits (66), Expect = 6.4
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 330 EMSKLQKDIEE--KKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLS 387
E++++ IE+ + + EK K R+ ELE + D + D +E Q +
Sbjct: 1 EINEVNNRIEDLTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWND-----QERAQAVI 55
Query: 388 VQKLELEDLVSKQAEEIVDLEALQVVSDQLQED-----AKEIEIELKE 430
++ LE ++ E LE L + + E+ E++ ELK
Sbjct: 56 KERSSLEAVLDTLEELKNSLEDLSELLELAVEEDDEETFNELDAELKA 103
>gnl|CDD|218434 pfam05103, DivIVA, DivIVA protein. The Bacillus subtilis divIVA1
mutation causes misplacement of the septum during cell
division, resulting in the formation of small, circular,
anucleate mini-cells. Inactivation of divIVA produces a
mini-cell phenotype, whereas overproduction of DivIVA
results in a filamentation phenotype. These proteins
appear to contain coiled-coils.
Length = 131
Score = 28.4 bits (64), Expect = 6.4
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 347 ELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLV----SKQAE 402
++IK E L + EL+ + L E+++ EE +Q+ V E + V K+AE
Sbjct: 29 QVIKDYEALYKENEELKEEIERLEEKLEEYKELEETLQKTLVVAQETAEEVKANAQKEAE 88
Query: 403 EIVDLEALQVVSDQLQEDAKEIEIELKEEVEMAR 436
I+ EA + ++++ DA E +L E + +
Sbjct: 89 LIIK-EA-EAKAERIVNDANEEAKKLATEYDELK 120
>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in
cell division proteins which are required for
kinetochore-spindle association.
Length = 321
Score = 29.2 bits (66), Expect = 6.5
Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 76 KAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETL-EMMTLDKEMAEERAETLQVE 134
K + E+ G+KR+ E L ++ K ++ L E + +++A+E +E
Sbjct: 149 KEGLEENLEGMKRDEELLNKDLNLINSIKPKLRKKLQALKEEIASLRQLADELNLCDPLE 208
Query: 135 LDLAKEKIEELTLDIELMKADIE 157
L+ A++++ L++ I + +E
Sbjct: 209 LEKARQELRSLSVKISEKRKQLE 231
Score = 29.2 bits (66), Expect = 7.0
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 328 KHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAA 376
+ E+ L I EK+++ EL + ++L + L ++L E++ A
Sbjct: 213 RQELRSLSVKISEKRKQLEELQQELQELTIAIEALTNKKSELLEEIAEA 261
>gnl|CDD|234275 TIGR03599, YloV, DAK2 domain fusion protein YloV. This model
describes a protein family that contains an N-terminal
DAK2 domain (pfam02734), so named because of similarity
to the dihydroxyacetone kinase family family. The
GTP-binding protein CgtA (a member of the obg family) is
a bacterial GTPase associated with ribosome biogenesis,
and it has a characteristic extension (TIGR03595) in
certain lineages. This protein family described here was
found, by the method of partial phylognetic profiling,
to have a phylogenetic distribution strongly correlated
to that of TIGR03595. This correlation implies some form
of functional coupling.
Length = 530
Score = 29.5 bits (67), Expect = 7.2
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 13/71 (18%)
Query: 419 EDAKEIEIE-----LKEEVEMARSATRE--------VIREKEAALESLADRELTIVKFRE 465
E+ +E++ E +E VE A A + V+RE A E A+ + + E
Sbjct: 90 ENKEELDAEDLAAAFQEAVETAYKAVMKPVEGTILTVLREAAEAAEKAAEEGDDLEEVME 149
Query: 466 LVIREKEAALE 476
+ E AL
Sbjct: 150 AAVEAAEKALA 160
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 29.6 bits (66), Expect = 7.3
Identities = 33/201 (16%), Positives = 82/201 (40%), Gaps = 6/201 (2%)
Query: 2 KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRD 61
K +++ +E L + + R ++ D+ E ++ E + + K
Sbjct: 217 KEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENK 276
Query: 62 LDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQ----EKQEAVEAKEDTADLVETLEMM 117
+E + +L + E + + + LK EL KL++ ++++ E++++ L + L+
Sbjct: 277 EEEKEKKLQE--EELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKE 334
Query: 118 TLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQL 177
+ E E+ + L+++ + +E+ E+L E ++ E+ +E K
Sbjct: 335 KEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLK 394
Query: 178 EQQNMRLRETLVRLRDLSAHE 198
E++ E + L
Sbjct: 395 EEELELKNEEEKEAKLLLELS 415
>gnl|CDD|192987 pfam12325, TMF_TATA_bd, TATA element modulatory factor 1 TATA
binding. This is the C-terminal conserved coiled coil
region of a family of TATA element modulatory factor 1
proteins conserved in eukaryotes. The proteins bind to
the TATA element of some RNA polymerase II promoters and
repress their activity. by competing with the binding of
TATA binding protein. TMF1_TATA_bd is the most conserved
part of the TMFs. TMFs are evolutionarily conserved
golgins that bind Rab6, a ubiquitous ras-like
GTP-binding Golgi protein, and contribute to Golgi
organisation in animal and plant cells. The Rab6-binding
domain appears to be the same region as this C-terminal
family.
Length = 121
Score = 27.9 bits (63), Expect = 7.5
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKL---KQRVTELEADCADLHEQVDAALGAEE 381
A K E+++L+ + +E +QE +L + E+L K+ + ELE + DL ++ + L E
Sbjct: 34 ASLKDELARLEAERDEARQEIVKLTEENEELRELKKEIEELEKELEDLEQRYETTL---E 90
Query: 382 MVQQLSVQKLELE 394
++ + S + EL
Sbjct: 91 LLGEKSERVEELR 103
>gnl|CDD|227606 COG5281, COG5281, Phage-related minor tail protein [Function
unknown].
Length = 833
Score = 29.2 bits (65), Expect = 7.6
Identities = 25/144 (17%), Positives = 45/144 (31%), Gaps = 14/144 (9%)
Query: 3 AEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDL 62
Q L K K ++ L + + Q E +AK + Q +L ++++T
Sbjct: 495 LAFQQQIADLSGAKEKASDQKSLLWKAEEQYALLKE-EAKQRQLQEQKALLEHKKET--- 550
Query: 63 DEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKE 122
E+ +++ E E Q E D L+K
Sbjct: 551 ----------LEYTSQLAELLDQQADRFELSAQAAGSQKERGSDLYREALAQNAAALNKA 600
Query: 123 MAEERAETLQVELDLAKEKIEELT 146
+ E A ++L K L+
Sbjct: 601 LNELAAYWSALDLLQGDWKAGALS 624
>gnl|CDD|213359 cd12825, EcCorA-like, Escherichia coli Mg2+ transporter CorA_like
subfamily. A bacterial subfamily of the Escherichia
coli CorA-Salmonella typhimurium
ZntB_like(EcCorA_ZntB-like) family of the MIT
superfamily of essential membrane proteins involved in
transporting divalent cations (uptake or efflux) across
membranes. This subfamily includes the Mg2+ transporters
Escherichia coli, Salmonella typhimurium, and
Helicobacter pylori CorAs (which can also transport
Co2+, and Ni2+). Structures of the intracellular domain
of Vibrio parahaemolyticus and Salmonella typhimurium
ZntB form funnel-shaped homopentamers, the tip of the
funnel is formed from two C-terminal transmembrane (TM)
helices from each monomer, and the large opening of the
funnel from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport through Salmonella typhimurium CorA, and
Mrs2p. Natural variants such as GVN and GIN, such as
occur in some ZntB family proteins, may be associated
with the transport of different divalent cations, such
as zinc and cadmium. The functional diversity of MIT
transporters may also be due to minor structural
differences regulating gating, substrate selection, and
transport.
Length = 287
Score = 28.8 bits (65), Expect = 7.8
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 268 SAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNKNKFDS-RLRDLSAH 326
I F R RDL A +IF F R S E+F + L D+ +
Sbjct: 64 PVTFIIKGNILFTIRYRDLPAFDIFPKRAFSQRKFFNSGEELFLFLFEVIVDYLADILEN 123
Query: 327 EKHEMSKLQKDIEEKKQENAELIKSQEKLK 356
++ +L ++I E+KQ + E + + KL
Sbjct: 124 ISKKIKQLSREILEEKQFSEEDLDALTKLN 153
>gnl|CDD|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed.
Length = 1112
Score = 29.2 bits (66), Expect = 7.9
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 71 QSAEFKAKIMESQAGLKRELEKLKQEKQEA--VEAKEDTADLVETLEMMTLDK 121
++ EFK I E+ A + ++E+LK E E+ ++ +ED ++ LE +
Sbjct: 45 KTDEFKQYIKEAVADIDAKIEELKAEAIESLDIDEREDIYAQIDKLEKEAYEI 97
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 28.5 bits (64), Expect = 8.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 81 ESQAGLKRELEKLKQEKQEAVEAKE 105
+ A L RELEK+K+E+ E E +E
Sbjct: 142 DETAALLRELEKIKKERAEEKEREE 166
>gnl|CDD|224247 COG1328, NrdD, Oxygen-sensitive ribonucleoside-triphosphate
reductase [Nucleotide transport and metabolism].
Length = 700
Score = 29.2 bits (66), Expect = 9.0
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 9/74 (12%)
Query: 403 EIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVK 462
L V +++ A+E+EIE + V + + R +
Sbjct: 36 IAKALIRATGVDEEVARIAREVEIEEIQ---------LLVEYLLMPMINKILARAYIEYR 86
Query: 463 FRELVIREKEAALE 476
F +RE
Sbjct: 87 FERDRVRETLGDPV 100
>gnl|CDD|148650 pfam07163, Pex26, Pex26 protein. This family consists of Pex26 and
related mammalian proteins. Pex26 is a type II
peroxisomal membrane protein which recruits Pex6-Pex1
complexes to peroxisomes. Mutations in Pex26 can lead to
human disorders.
Length = 309
Score = 28.8 bits (64), Expect = 9.2
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 354 KLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIV-------- 405
K+ + L+ CA L + + + + +L V ++ L +AEE++
Sbjct: 130 KMGEPGAVLDVVCAWLQDPGNQSQPGYGTLAELHVLRILLPMGHLSEAEELLVGSAAFTE 189
Query: 406 --DLEALQVVSDQLQEDAKE 423
ALQ + D Q++A
Sbjct: 190 EQRQAALQAIHDARQQNASS 209
>gnl|CDD|218956 pfam06248, Zw10, Centromere/kinetochore Zw10. Zw10 and rough deal
proteins are both required for correct metaphase
check-pointing during mitosis. These proteins bind to
the centromere/kinetochore.
Length = 593
Score = 28.9 bits (65), Expect = 9.4
Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 312 NKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHE 371
K ++ L + + +++ I +K + + S E L ++V+ L D +DL +
Sbjct: 8 EKEDLRGKISKLLSKVEEYKEEVRDMINKKYSDFLPNMSSAEDLLEQVSSLSEDISDLLK 67
Query: 372 QVDAALGAEEMVQQLSVQKLELEDLVSKQAEE----IVDLEALQVVSDQLQE 419
+ E++Q L+ EL +L +Q EE + L+ L + + L+E
Sbjct: 68 SEV----SNEILQDLNDAVEELAEL-KRQLEEKILGLKILQKLLKIHEALEE 114
>gnl|CDD|223266 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), A subunit [DNA replication,
recombination, and repair].
Length = 804
Score = 29.2 bits (66), Expect = 9.6
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 317 DSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRV-TELEAD 365
D RLR L+ E+ ++ K K++E++ + +++ S+E+L + EL
Sbjct: 425 DLRLRRLTGLEEEKIEKELKELEKEIADLEKILASEERLLDIIKKELLEI 474
>gnl|CDD|237964 PRK15426, PRK15426, putative diguanylate cyclase YedQ; Provisional.
Length = 570
Score = 28.8 bits (65), Expect = 9.8
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 205 FDSRLRDL--SAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRL 245
+DS LR L SA + N FD R L A + ++ + R+
Sbjct: 282 YDSHLRLLTSSAPGVRTGNIFDPRELALLARAMEHDTRGGIRM 324
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.130 0.346
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,950,532
Number of extensions: 3278279
Number of successful extensions: 8829
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7149
Number of HSP's successfully gapped: 1133
Length of query: 640
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 537
Effective length of database: 6,369,140
Effective search space: 3420228180
Effective search space used: 3420228180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.8 bits)