RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15551
(640 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 74.9 bits (183), Expect = 4e-14
Identities = 94/654 (14%), Positives = 197/654 (30%), Gaps = 155/654 (23%)
Query: 38 EFKAKIMESQAASSLFRYREK-TRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQE 96
+F+ + Q L + + + D +Q + I+ K E++ +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-----DMPKSILS-----KEEIDHIIMS 57
Query: 97 KQEAVEAKEDTADLVETLEMMTLDKEMAEERAET-LQVELDLAKEKIEELTLDIELMKAD 155
K T L TL + +EM ++ E L++ I+ +M
Sbjct: 58 KDA----VSGTLRLFWTLL--SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 156 IEKSCDGA-GDGTEVSHYQIKQLEQQNMRLRETLVRLRD---LSAHEIFNNNKFDSRL-- 209
+ D D + Y + +L+ +LR+ L+ LR + + + K + +
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYL-KLRQALLELRPAKNVLIDGVLGSGK--TWVAL 168
Query: 210 ---RDLSAHEIFNNN----KFDSRLRDLSAHEIFNN--NKFDSRLYDLSAH--EIFNNKN 258
+ + + E+ + D S H I +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 259 KFDSRLRDLSAHEIFNNKNKFDSR--LRDLSAHEIFNNNKFD--SRL----RDLSAHEIF 310
+ LR L + + N L ++ + + N F+ ++ R +
Sbjct: 229 SIQAELRRLLKSKPYEN-----CLLVLLNVQNAKAW--NAFNLSCKILLTTRFKQVTDFL 281
Query: 311 NNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLH 370
+ L H L D E L+ L R +L + +
Sbjct: 282 SAATTTHISL-------DHHSMTLTPD------EVKSLLLK--YLDCRPQDLPREVLTTN 326
Query: 371 EQVDAALGAE--------EMVQQLSVQKLE------LEDLVSKQAEEIVDL-EALQVVSD 415
+ + + + + ++ KL L L + E + + L V
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL---EPAEYRKMFDRLSV--- 380
Query: 416 QLQEDAKEIEIELKEEV--EMARSATREVIREKEAALESLADR---ELTI----VKFREL 466
A I L + ++ +S V+ + SL ++ E TI +
Sbjct: 381 -FPPSAH-IPTILLSLIWFDVIKSDVMVVV--NKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 467 VIREKEAALESLADRELTIVKFRELNSLD-EKVSTENIEKCVTYFNTFYPVLFPDTKFSH 525
V E E AL R + + + + D + + +++ YF +SH
Sbjct: 437 VKLENEYALH----RSI-VDHYNIPKTFDSDDLIPPYLDQ---YF------------YSH 476
Query: 526 VG-HL----LMDYVKILSTASDCLQTDSKIIQALIQETMMPCECYSLFLHSYGNEIGREG 580
+G HL + + + + D + ++ I+ G
Sbjct: 477 IGHHLKNIEHPERMTLFRM----VFLDFRFLEQKIRHDSTAWNA--------------SG 518
Query: 581 STENIEKCVTYFNTFYPVLFPGHPSFSSCGSLLMDYVK------ILSTACDCLQ 628
S N + + P + P + + ++D++ I S D L+
Sbjct: 519 SILNT---LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
Score = 43.3 bits (101), Expect = 3e-04
Identities = 69/472 (14%), Positives = 138/472 (29%), Gaps = 123/472 (26%)
Query: 15 MKIKYREKTRDLDEMKIQL------------DQSAEFKAKIMESQAA-SSLFRYREKTRD 61
+ +K + EM +L D S+ K +I QA L + +
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 62 LDEMKIQLD--QSAE------FKAKIM--ESQAGLKRELEKLKQEKQEAVEAKEDTADLV 111
L + L Q+A+ KI+ + L +++ T
Sbjct: 247 L----LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL-SAATTTHISLDHHSMTLTPD 301
Query: 112 ETLEMMT--LDKEMAEERAETLQVE---LDLAKEKIEE--------LTLDIELMKADIEK 158
E ++ LD + E L L + E I + ++ + + IE
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 159 SCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNN-----KFDSRL-RDL 212
S + LE R LS +F + S + D+
Sbjct: 362 S--------------LNVLEPAEYR-----KMFDRLS---VFPPSAHIPTILLSLIWFDV 399
Query: 213 SAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLYDLSAHEIFNNKNKFDSRLRDLSAH-- 270
++ ++L S E + + + K K ++ + + H
Sbjct: 400 IKSDVMV---VVNKLHKYSLVEK-QPKESTISIPSIY----LELKVKLEN---EYALHRS 448
Query: 271 --EIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEK 328
+ +N FDS DL + + F S + H + N ++
Sbjct: 449 IVDHYNIPKTFDSD--DLIP--PYLDQYFYSHI----GHHLKNIEH----------PERM 490
Query: 329 HEMSKLQKD---IEEKKQENAELIKSQEKLKQRVTELEADCADL--HEQ--VDAALGAEE 381
+ D +E+K I+ + L ++ D E
Sbjct: 491 TLFRMVFLDFRFLEQK-------IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 382 MVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVE 433
+V + D + K E ++ + ++ L + + I E ++V+
Sbjct: 544 LVN-------AILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 35.6 bits (81), Expect = 0.053
Identities = 37/294 (12%), Positives = 80/294 (27%), Gaps = 84/294 (28%)
Query: 3 AEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFK------------AKIMES---- 46
I+D D K +K + E + + + AE++ A I
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 47 -----------QAASSLFRYREKTRDLDEMKIQL-DQSAEFKAKIMESQAGLKRELEKLK 94
+ L +Y + E I + E K K+ A + ++
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 95 QEKQEAVEAKEDTADLVETLE-----------MMTLDKEMAEERAETLQVELDLAKEKIE 143
K D+ DL+ + + E E
Sbjct: 455 IPK------TFDSDDLIPPYLDQYFYSHIGHHLKNI--EHPERMTL------------FR 494
Query: 144 ELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNN 203
+ LD ++ I + + TL +L+ + N+
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILN---------------TLQQLKFYKPYICDNDP 539
Query: 204 KFDSRLRDLSAHEIF----NNNKFDSRLRDLSAHEIFNNNKFDSRLYDLSAHEI 253
K++ + + F N S+ DL + ++ +++ + ++
Sbjct: 540 KYERLVNAI---LDFLPKIEENLICSKYTDLLRIALMAEDEA---IFEEAHKQV 587
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 66.8 bits (163), Expect = 1e-11
Identities = 64/392 (16%), Positives = 143/392 (36%), Gaps = 67/392 (17%)
Query: 4 EIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLD 63
E+Q E+L K + ++ +L E++ + Q E K + E L E + +
Sbjct: 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEK-----LQAETELYAEAE 912
Query: 64 EMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEM 123
EM+++L AK E + L ++++E++ + + + + + + + + E
Sbjct: 913 EMRVRL------AAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEE 966
Query: 124 AEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMR 183
E + LQ+E A KI+++ DI +M+ K + K LE++
Sbjct: 967 EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKL-----------TKERKLLEERVSD 1015
Query: 184 LRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDS 243
L L + + + NK +S + +L + RL+
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHESMISEL-----------EVRLKKEEK----------- 1053
Query: 244 RLYDLSAHEIFNNKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRD 303
S E+ K K + DL +I + + L+ E
Sbjct: 1054 -----SRQELEKIKRKLEGESSDLH-EQIAELQAQIAELKAQLAKKE------------- 1094
Query: 304 LSAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELE 363
E+ + + + K ++ +L+ I + +++ ++ K +++ +L
Sbjct: 1095 ---EELQAALARLEDETSQKNNALK-KIRELESHISDLQEDLESEKAARNKAEKQKRDLS 1150
Query: 364 ADCADLHEQVDAALGAEEMVQQLSVQKLELED 395
+ L +++ L Q+L + +D
Sbjct: 1151 EELEALKTELEDTLDTTATQQELRGSDYKDDD 1182
Score = 61.0 bits (148), Expect = 9e-10
Identities = 37/218 (16%), Positives = 93/218 (42%), Gaps = 3/218 (1%)
Query: 1 MKAEIQDLKEKLDTMKIKYREKTRDLDE-MKIQLDQSAEFKA--KIMESQAASSLFRYRE 57
+ AE ++++ +L K + E +++ ++ + ++S + +A K M+ Q + E
Sbjct: 907 LYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEE 966
Query: 58 KTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMM 117
+ +++++ + K+ + ++ + KL +E++ E D + E
Sbjct: 967 EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEK 1026
Query: 118 TLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQL 177
+ + + E++ EL++ +K E+ ++E +K +E + QI +L
Sbjct: 1027 AKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAEL 1086
Query: 178 EQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAH 215
+ Q + E L E N ++R+L +H
Sbjct: 1087 KAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH 1124
Score = 54.5 bits (131), Expect = 1e-07
Identities = 24/185 (12%), Positives = 71/185 (38%), Gaps = 3/185 (1%)
Query: 320 LRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGA 379
+ S + E K+Q+ + + +++ E +++KL+ + + + +
Sbjct: 939 EEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM--- 995
Query: 380 EEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSAT 439
E+ +L+ ++ LE+ VS + + E +L+ + + EL+ ++ +
Sbjct: 996 EDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSR 1055
Query: 440 REVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELTIVKFRELNSLDEKVS 499
+E+ + K +D I + + + K + + + + + + S
Sbjct: 1056 QELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNAL 1115
Query: 500 TENIE 504
+ E
Sbjct: 1116 KKIRE 1120
Score = 47.9 bits (114), Expect = 9e-06
Identities = 34/208 (16%), Positives = 86/208 (41%), Gaps = 11/208 (5%)
Query: 299 SRLRDL--SAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLK 356
+R+ + + ++ K K ++ DL + E + QK EK + ++ K ++ +
Sbjct: 934 ARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDIL 993
Query: 357 Q---RVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVV 413
+ +L + L E+V + + + L L +K I +LE
Sbjct: 994 IMEDQNNKLTKERKLLEERVSD---LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKK 1050
Query: 414 SDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEA 473
++ +++ ++I+ +L+ E E+ + LA +E + + E E
Sbjct: 1051 EEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARL--EDET 1108
Query: 474 ALESLADRELTIVKFRELNSLDEKVSTE 501
+ ++ A +++ ++ ++ L E + +E
Sbjct: 1109 SQKNNALKKIRELE-SHISDLQEDLESE 1135
Score = 47.9 bits (114), Expect = 1e-05
Identities = 34/192 (17%), Positives = 80/192 (41%), Gaps = 12/192 (6%)
Query: 319 RLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALG 378
L E + LQ+ ++ + + AE + + +L + ELE ++ +++
Sbjct: 882 ELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEE-- 939
Query: 379 AEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSA 438
EE QQL +K +++ + E++ + EA + + A ++++++ +
Sbjct: 940 -EERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQ 998
Query: 439 TREVIREKEA-------ALESLADRELTIVKFRELVIREKEAALESLADRELTIVKFR-E 490
++ +E++ +LA+ E +L + E+ + L R K R E
Sbjct: 999 NNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKL-KNKHESMISELEVRLKKEEKSRQE 1057
Query: 491 LNSLDEKVSTEN 502
L + K+ E+
Sbjct: 1058 LEKIKRKLEGES 1069
Score = 46.4 bits (110), Expect = 3e-05
Identities = 41/193 (21%), Positives = 87/193 (45%), Gaps = 13/193 (6%)
Query: 324 SAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALG----A 379
++ EM ++++ K+ + ++L+Q+ T+L + L E++ A A
Sbjct: 852 VTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEA 911
Query: 380 EEMVQQLSVQKLELEDLVSKQAEEIVDLE----ALQVVSDQLQEDAKEIEIELKEEVEMA 435
EEM +L+ +K ELE+++ + I + E LQ ++Q+ ++E +L+EE E A
Sbjct: 912 EEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEE-EAA 970
Query: 436 RSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELTIV----KFREL 491
R + + ++ + D L + + +E++ E ++D + K + L
Sbjct: 971 RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030
Query: 492 NSLDEKVSTENIE 504
L K + E
Sbjct: 1031 TKLKNKHESMISE 1043
Score = 45.6 bits (108), Expect = 5e-05
Identities = 70/405 (17%), Positives = 147/405 (36%), Gaps = 62/405 (15%)
Query: 52 LFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLV 111
LF + + ++ E + E Q + EL++L+Q+ + E K L
Sbjct: 842 LFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNL---LQ 898
Query: 112 ETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSH 171
E L+ T AEE L + +E + E+ IE + ++
Sbjct: 899 EKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQL-----------Q 947
Query: 172 YQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDLS 231
+ K+++QQ + L E L D +++ + + + L+
Sbjct: 948 AEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDD----ILIMEDQNNKLT 1003
Query: 232 AHEIFNNNKFDSRLYDLSAHEIFNNKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEI 291
+ +L+ E + ++L+ KNK +S + +L
Sbjct: 1004 KERKLLEERVSDLTTNLAEEE---------EKAKNLTKL-----KNKHESMISEL----- 1044
Query: 292 FNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKS 351
+ RL+ ++ + + R L + E S L + I E + + AEL
Sbjct: 1045 ------EVRLKKEE-----KSRQELEKIKRKL----EGESSDLHEQIAELQAQIAEL--- 1086
Query: 352 QEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQ 411
+ +L ++ EL+A A L ++ A + +++L +L++ + + E
Sbjct: 1087 KAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEK-- 1144
Query: 412 VVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADR 456
Q ++ ++E+E LK E+E T + + + D+
Sbjct: 1145 ----QKRDLSEELE-ALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
Score = 39.4 bits (92), Expect = 0.003
Identities = 24/149 (16%), Positives = 61/149 (40%), Gaps = 8/149 (5%)
Query: 1 MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTR 60
++ I +L+ +L + +E + +++ + + +++Q A + +K
Sbjct: 1037 HESMISELEVRLKKEEKSRQELEKIKRKLEGES-SDLHEQIAELQAQIAELKAQLAKKEE 1095
Query: 61 DLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQ----EKQEAVEAKEDTADLVETLEM 116
+L +L+ K ++ L+ + L++ EK +A++ DL E LE
Sbjct: 1096 ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEA 1155
Query: 117 MTLDKEMAEERAETLQVELDLAKEKIEEL 145
+ K E+ +T + +L ++
Sbjct: 1156 L---KTELEDTLDTTATQQELRGSDYKDD 1181
Score = 30.2 bits (68), Expect = 2.6
Identities = 15/99 (15%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 1 MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFR--YREK 58
+ E+Q +L+ + + + E++ + + + + +AA + R+
Sbjct: 1093 KEEELQAALARLEDETSQKNNALKKIRELESHIS---DLQEDLESEKAARNKAEKQKRDL 1149
Query: 59 TRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEK 97
+ +L+ +K +L+ + + A E L+ K +K
Sbjct: 1150 SEELEALKTELEDTLDTTATQQE----LRGSDYKDDDDK 1184
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.3 bits (143), Expect = 3e-09
Identities = 86/473 (18%), Positives = 153/473 (32%), Gaps = 137/473 (28%)
Query: 4 EIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIM-----ESQAASSLFRYREK 58
+I L KL KT++L I+ A+IM + ++ S+LFR
Sbjct: 100 DIHALAAKLLQENDTTLVKTKEL----IK----NYITARIMAKRPFDKKSNSALFR---- 147
Query: 59 TRDLDEMKIQLDQSAEFKAKIM-------ESQAGLKRELEKLKQEKQEAVEAKEDTADLV 111
E A+++ + + EL L Q V DL+
Sbjct: 148 ------------AVGEGNAQLVAIFGGQGNTDDYFE-ELRDLYQTYHVLVG------DLI 188
Query: 112 ETLEMMTLDKEMAEERAETLQ--VELDLAKEKIEELTLDIE--LMKAD----------IE 157
+ AETL + L EK+ L+I L I
Sbjct: 189 KFS-------------AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 158 KSCDGAGDGTEVSHYQI--KQL----EQQNMRLRETLVRLRDL-SAHEI--------FNN 202
SC G +++HY + K L + L+ + L +A I F
Sbjct: 236 ISCPLIG-VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV 294
Query: 203 NKFDSRLRDL-----SAHEIFNNNKFDSRLRDLSAHEIFNNNKFDS---RLYDLSAHEIF 254
+ + L +E + N + + S + NN S + +L+ ++
Sbjct: 295 S-VRKAITVLFFIGVRCYEAYPNTSLPPSILEDS---LENNEGVPSPMLSISNLTQEQVQ 350
Query: 255 NNKNKFDSRLRDLSAHEI--FNNKNKF------------DSRLRDLSAHEIFNNNK--FD 298
+ NK +S L EI N + LR A + ++ F
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 299 SRLRDLSAHEIFNNKNKFDSRLRDLSA--HEKHEMSKLQKDIEEKKQENAELIKSQEKLK 356
R K KF +R +++ H + I + +N +++ ++
Sbjct: 411 ER------------KLKFSNRFLPVASPFHSHL-LVPASDLINKDLVKNNVSFNAKD-IQ 456
Query: 357 QRV--TELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDL 407
V T D +DL +V + +E +V + ++ E +A I+D
Sbjct: 457 IPVYDTF---DGSDL--RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF 504
Score = 51.2 bits (122), Expect = 1e-06
Identities = 47/285 (16%), Positives = 94/285 (32%), Gaps = 69/285 (24%)
Query: 264 LRDLS--AHEIFNNKNKFDSRLRDLSAHEIFNNN------KFDSRLRDLSAHEIFNNKNK 315
L S A +++N + S +I NN F I N
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE----KGKRIREN--- 1687
Query: 316 FDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELI--KSQEKLKQRVTELEADCADLHEQV 373
+ + + + K + K+ K+I E + L T+ Q
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHST---SYTFRSEKGLLSA--TQ--------FTQP 1734
Query: 374 DAALGAEEMVQQLSVQKLELEDLVSKQA--------E--------EIVDLE-ALQVVSD- 415
AL E + L+ + L+ A E +++ +E ++VV
Sbjct: 1735 --ALTLMEKAA---FEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR 1789
Query: 416 -QLQEDAKEIEIELKEEVEM-ARSATREVIREKEAALESLADR-------ELTIVKF--- 463
+ A + + M A + R + AL+ + +R + IV +
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE 1849
Query: 464 -RELVIREKEAALESLADRELTIVKFR--ELNSLDEKVSTENIEK 505
++ V AL+++ + L +K + ++ L + +S E +E
Sbjct: 1850 NQQYVAAGDLRALDTVTN-VLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 45.4 bits (107), Expect = 5e-05
Identities = 104/614 (16%), Positives = 170/614 (27%), Gaps = 212/614 (34%)
Query: 82 SQAGLKRELEKLKQEKQEAVEAKEDTADLVETLE------MMTLDKEMAEERAETLQVEL 135
SQ L+ + K+ E E A ++ E + ++ + + L + L
Sbjct: 31 SQ--LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL 88
Query: 136 DLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDL- 194
+ L DI H +L Q+N TLV+ ++L
Sbjct: 89 TEFENCY--------LEGNDI--------------HALAAKLLQEN---DTTLVKTKELI 123
Query: 195 ----SAHEIFN---NNKFDSRLRDLSAHE--------IF----NNNK-FDSRLRDLSAHE 234
+A + + K +S L A IF N + F+ LRD
Sbjct: 124 KNYITARIMAKRPFDKKSNSAL--FRAVGEGNAQLVAIFGGQGNTDDYFEE-LRD----- 175
Query: 235 IFNNNKFDSRLYDLSAHEIFNNKNKFDSRLRDLSAHEIFNNK---NKFDSR--LRD---- 285
LY + + L +L + K + L +
Sbjct: 176 ----------LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 286 ----------LS---------AH-EIFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSA 325
+S AH + ++L + E+ S L+ +
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLAHYVVT------AKLLGFTPGELR-------SYLKGATG 272
Query: 326 HEKH-------EMSKLQKDIEEKKQENAELI---------KSQEKLKQRVTELEADCADL 369
H + + D E + + E T L + L
Sbjct: 273 HSQGLVTAVAIAET----DSWESFFVSVRKAITVLFFIGVRCYEAY--PNTSLPP--SIL 324
Query: 370 HEQVDAALGAEE-MVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIEL 428
+ ++ G M LS+ L E + ++ V+ + L K++EI L
Sbjct: 325 EDSLENNEGVPSPM---LSISNLTQEQV-----QDYVNK-----TNSHLPAG-KQVEISL 370
Query: 429 KEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELTIVKF 488
A V+ +L L L +R+ +A R + F
Sbjct: 371 VN------GAKNLVVSGPPQSLYGLN-----------LTLRKAKAPSGLDQSR----IPF 409
Query: 489 RELNSLDEKVSTENIEKCVTYFNTFYPVLFPDTKFSHVGHLLMDYVKILSTASDCLQTDS 548
E K + + N F PV P F H HLL+ ASD + D
Sbjct: 410 SE-----RK---------LKFSNRFLPVASP---F-H-SHLLVP-------ASDLINKDL 443
Query: 549 KIIQALIQETMMPCECYSLF----LHSYGNEIGREGSTENIEKCV-----TYFNTFYPVL 599
+ Y F L I I V T F + +
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD 503
Query: 600 F-PGHPSFSSCGSL 612
F PG S G L
Sbjct: 504 FGPG--GASGLGVL 515
Score = 43.9 bits (103), Expect = 2e-04
Identities = 44/268 (16%), Positives = 86/268 (32%), Gaps = 74/268 (27%)
Query: 245 LYDLS--AHEIFNNKNKFDSRLRDLSAHEIFNNKNK-----FDS----RLRDLSAHEIFN 293
LY S A +++N + S +I N F R+R+ + IF
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 294 NNKFDSRLRDLSAHEIFNNKNKFDSRLRDLS-AHEKHEMSKLQ--------------KDI 338
D +L+ +IF + + EK +S Q +D+
Sbjct: 1695 TIV-DGKLK---TEKIFKE---INEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDL 1747
Query: 339 EEK--KQENA--------E---L--------IKSQEKL-KQRVTELEADCADLHEQVD-- 374
+ K +A E L I+S ++ R E
Sbjct: 1748 KSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR-GMTMQVAVPRDELGRSN 1806
Query: 375 ---AALGAEEMVQQLSVQKLE-LEDLVSKQAEEIVD-----LEALQVVS-------DQLQ 418
A+ + S + L+ + + V K+ +V+ +E Q V+ D +
Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVT 1866
Query: 419 EDAKEIEIELKEEVEMARSATREVIREK 446
I+++ + +E+ +S + E +
Sbjct: 1867 NVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 34.6 bits (79), Expect = 0.12
Identities = 25/125 (20%), Positives = 41/125 (32%), Gaps = 33/125 (26%)
Query: 475 LESLADRELTIVKFRELNSLDEKVSTENIEKCVTYFNTFYPVLFPDTKFSHVGHLLMDYV 534
+++ + R LT+ S ++E + +L P F L +
Sbjct: 1 MDAYSTRPLTL-------------SHGSLE---------HVLLVPTASFFIASQLQEQFN 38
Query: 535 KILSTASDCLQTDSKIIQALIQETMMPCECYSLFLH--SYGNEIGREGSTENI-EKCVTY 591
KIL ++ D E P E FL S E + G + + C+T
Sbjct: 39 KILPEPTEGFAAD--------DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE 90
Query: 592 FNTFY 596
F Y
Sbjct: 91 FENCY 95
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 51.3 bits (123), Expect = 1e-06
Identities = 24/183 (13%), Positives = 65/183 (35%), Gaps = 6/183 (3%)
Query: 319 RLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALG 378
R + + ++ E KK + +S E+ K+ LE L ++D
Sbjct: 885 RTLKAIVYLQCCYRRMMAKRELKKLKIEA--RSVERYKKLHIGLENKIMQLQRKIDEQNK 942
Query: 379 A-EEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIE---LKEEVEM 434
+ ++++++ ++ K ++ L + + ++ E L++E+
Sbjct: 943 EYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQ 1002
Query: 435 ARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELTIVKFRELNSL 494
++ + + + + + L+ EKE + D+ I + E +
Sbjct: 1003 TQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLV 1062
Query: 495 DEK 497
+E
Sbjct: 1063 EET 1065
Score = 50.5 bits (121), Expect = 2e-06
Identities = 27/170 (15%), Positives = 63/170 (37%), Gaps = 17/170 (10%)
Query: 313 KNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQ 372
++++ L K+ + +E K ++ + +L +D L
Sbjct: 923 HIGLENKIMQLQR-------KIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS 975
Query: 373 VDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEV 432
EE + + + L L++ ++K +E+ + ++E A + + E ++ V
Sbjct: 976 -------EEEAKNATNRVLSLQEEIAKLRKELHQTQT---EKKTIEEWADKYKHETEQLV 1025
Query: 433 EMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRE 482
+ + EKE + D+ I + E + E+ LE + E
Sbjct: 1026 SELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDE 1075
Score = 47.8 bits (114), Expect = 9e-06
Identities = 29/207 (14%), Positives = 66/207 (31%), Gaps = 14/207 (6%)
Query: 10 EKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQL 69
+ + I + R E K+ I++ L R + +Q
Sbjct: 836 QCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQC 895
Query: 70 DQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAE 129
KREL+KLK E + K+ L + + + + +
Sbjct: 896 CYRRMMA----------KRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYK 945
Query: 130 TLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLV 189
+L +++ + T + + S + A + T ++ L+++ +LR+ L
Sbjct: 946 SLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATN----RVLSLQEEIAKLRKELH 1001
Query: 190 RLRDLSAHEIFNNNKFDSRLRDLSAHE 216
+ + +K+ L +
Sbjct: 1002 QTQTEKKTIEEWADKYKHETEQLVSEL 1028
Score = 45.9 bits (109), Expect = 4e-05
Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 18/182 (9%)
Query: 4 EIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLD 63
++ K+ ++ K + R +DE + K + + + Y +T L
Sbjct: 915 SVERYKKLHIGLENKIMQLQRKIDEQNKEY--------KSLLEKMNNLEITYSTETEKLR 966
Query: 64 EMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEM 123
+L S E L+ E+ KL++E + K+ + + K
Sbjct: 967 SDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY------KHE 1020
Query: 124 AEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMR 183
E+ L+ + L K + EEL I +I ++ + + +L+ + R
Sbjct: 1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEET----KQLELDLNDER 1076
Query: 184 LR 185
LR
Sbjct: 1077 LR 1078
Score = 43.6 bits (103), Expect = 2e-04
Identities = 21/143 (14%), Positives = 54/143 (37%), Gaps = 11/143 (7%)
Query: 308 EIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQE---KLKQRVTELEA 364
+ N + + + ++ +L+ EE K ++ QE KL++ + + +
Sbjct: 946 SLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT 1005
Query: 365 DCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEI 424
+ + E ++ + EL++ + E +L + + DQ +E + +
Sbjct: 1006 EKKTIEEWA------DKYKHETEQLVSELKEQNTLLKTEKEELN--RRIHDQAKEITETM 1057
Query: 425 EIELKEEVEMARSATREVIREKE 447
E +L EE + + +
Sbjct: 1058 EKKLVEETKQLELDLNDERLRYQ 1080
Score = 41.2 bits (97), Expect = 0.001
Identities = 23/181 (12%), Positives = 65/181 (35%), Gaps = 15/181 (8%)
Query: 328 KHEMSKLQKDIEEKKQENAELIKSQEK---LKQRVTELEADCADLHEQVDAALGAEEMVQ 384
+ LQ + N + +E + Q+ H + A + + +
Sbjct: 839 RDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYR 898
Query: 385 QLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIR 444
++ ++ EL+ L K +E + + L+ +++ ++ E+ + +S + +
Sbjct: 899 RMMAKR-ELKKL--KIEAR--SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEK-MN 952
Query: 445 EKEAALESLADRELTIVKFRELVIREKEAALESLADRELTIVKFRELNSLDEKVSTENIE 504
E + ++ + V+ + E + A + + E+ L +++ E
Sbjct: 953 NLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQ------EEIAKLRKELHQTQTE 1006
Query: 505 K 505
K
Sbjct: 1007 K 1007
Score = 37.8 bits (88), Expect = 0.012
Identities = 24/182 (13%), Positives = 67/182 (36%), Gaps = 10/182 (5%)
Query: 327 EKHEMSKLQKDIEEKKQENAELIKS-----QEKLKQRVTELEADCADLHEQVDAALGAEE 381
+KH L + + + ++ K + + ++EA + ++++ L E
Sbjct: 871 QKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGL--EN 928
Query: 382 MVQQLSVQKLELEDLVSKQAEEIVDLEA-LQVVSDQLQEDAKEIEIELKEEVEMARSATR 440
+ QL + E E++ +LE +++L+ D + + + +E A +
Sbjct: 929 KIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKN-ATNRVL 987
Query: 441 EVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELTIVKFR-ELNSLDEKVS 499
+ E + L + E + K + +++ + + E L+ ++
Sbjct: 988 SLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIH 1047
Query: 500 TE 501
+
Sbjct: 1048 DQ 1049
Score = 31.6 bits (72), Expect = 1.0
Identities = 14/95 (14%), Positives = 34/95 (35%)
Query: 2 KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRD 61
+Q+ KL + + + + ++E + E ++ Q E R
Sbjct: 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRR 1045
Query: 62 LDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQE 96
+ + ++ ++ E K Q L E+L+ +
Sbjct: 1046 IHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 45.4 bits (108), Expect = 5e-05
Identities = 16/158 (10%), Positives = 40/158 (25%), Gaps = 7/158 (4%)
Query: 1 MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTR 60
++ ++ +E L + + A K + +
Sbjct: 849 AGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVY 908
Query: 61 DLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLD 120
+ + K K +E+ G + LE ++ A+ +
Sbjct: 909 LGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNY-------NGV 961
Query: 121 KEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEK 158
E+ E + + K E + ++K
Sbjct: 962 PELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQK 999
Score = 42.7 bits (101), Expect = 4e-04
Identities = 23/204 (11%), Positives = 57/204 (27%), Gaps = 7/204 (3%)
Query: 254 FNNKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNK 313
K + + E+ N ++LR + D + + +
Sbjct: 808 HKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAE 867
Query: 314 NKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQV 373
+ LR +K LQK K+ E + + + E + ++
Sbjct: 868 QEHAEALRIELKRQKKIAVLLQKYNRILKKL--ENWATTKSVYLGSNETGDSITAVQAKL 925
Query: 374 DAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVE 433
E + + + + ++ +L V +L E + V+
Sbjct: 926 KNL---EAFDGECQSLEGQSNSDLLSILAQLTELNYNGVP--ELTERKDTFFAQQWTGVK 980
Query: 434 MARSATREVIREKEAALESLADRE 457
+ + + + L+ + D
Sbjct: 981 SSAETYKNTLLAELERLQKIEDLH 1004
Score = 32.3 bits (74), Expect = 0.66
Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 2/105 (1%)
Query: 1 MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTR 60
+ + + + ++ K + E + QS I+ + E T
Sbjct: 907 VYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTE 966
Query: 61 DLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE 105
D Q + A+ ++ L ELE+L++ +
Sbjct: 967 RKDTFFAQQWTGVKSSAETYKNT--LLAELERLQKIEDLHHHHHH 1009
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 43.7 bits (102), Expect = 2e-04
Identities = 42/286 (14%), Positives = 103/286 (36%), Gaps = 25/286 (8%)
Query: 13 DTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEM------- 65
D M K+ + + +E+++ Q E + K ++ + +Y+E R +
Sbjct: 8 DAMSQKHLQINQRFEELRLIT-QDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLN 66
Query: 66 -KIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMA 124
+ ++ + + K + + L+RE + L+Q + E E + T L+ + + LD E+
Sbjct: 67 PQERMSRETALQQKQVSLETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELI 126
Query: 125 EERAE--------TLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQ 176
+ + + LD+ + E+L I + I + + + +
Sbjct: 127 QWKRRQQLAGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRR-AEHLCQQLPIPGPVEEM 185
Query: 177 LEQQNMRLRETLVRLRDLSA-------HEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRD 229
L + N + + + L + + KF + +R L ++ +
Sbjct: 186 LAEVNATITDIISALVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQVKAT 245
Query: 230 LSAHEIFNNNKFDSRLYDLSAHEIFNNKNKFDSRLRDLSAHEIFNN 275
+ + + + + + + EI NN + + F N
Sbjct: 246 IISEQQAKSLLKNENTRNECSGEILNNCCVMEYHQATGTLSAHFRN 291
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 38.6 bits (89), Expect = 0.006
Identities = 31/230 (13%), Positives = 79/230 (34%), Gaps = 10/230 (4%)
Query: 256 NKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNKNK 315
+KN + E+ + + L +F N D+ + E + + +
Sbjct: 592 HKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTR 651
Query: 316 FDSRLRDLSAHE---KHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQ 372
+ A E + + + + + +QE ++ Q+ L Q E E
Sbjct: 652 DALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEA 711
Query: 373 VDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEV 432
+ A+ + + + + E + E V L+ + ++ +A+ ++ E+
Sbjct: 712 MSMAVESTGNAKAEAESRAEAA---RIEGEGSVLQAKLKAQALAIETEAELERVKKVREM 768
Query: 433 EMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRE 482
E+ + + + +A + + + KF+E+ + LA
Sbjct: 769 ELIYARAQLELEVSKAQQLANVEAK----KFKEMTEALGPGTIRDLAVAG 814
Score = 32.5 bits (73), Expect = 0.45
Identities = 22/154 (14%), Positives = 51/154 (33%)
Query: 6 QDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEM 65
E +D +++ L Q A K + + + R+K D E
Sbjct: 640 VQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEA 699
Query: 66 KIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAE 125
+ + E +A M ++ + E + + +E + + + ++ E
Sbjct: 700 EKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAEL 759
Query: 126 ERAETLQVELDLAKEKIEELTLDIELMKADIEKS 159
ER + ++ + EL + A++E
Sbjct: 760 ERVKKVREMELIYARAQLELEVSKAQQLANVEAK 793
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 37.2 bits (85), Expect = 0.015
Identities = 41/330 (12%), Positives = 105/330 (31%), Gaps = 4/330 (1%)
Query: 98 QEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIE 157
Q+++ A + + + + + L A E + T+ ++
Sbjct: 370 QQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRS 429
Query: 158 KSCDGAGDGTEVSHYQIKQLEQQNMR-LRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHE 216
G + ++ +L Q+N L E+L L + A + KF R + ++E
Sbjct: 430 VIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNE 489
Query: 217 IFNNNKFDSRLRDLSAHEIFNNNKFDSRLYDLSAHEI---FNNKNKFDSRLRDLSAHEIF 273
++ + + + + Y I + + ++ + + +
Sbjct: 490 LYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTM 549
Query: 274 NNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEKHEMSK 333
+ LS + + S + +K + E +++
Sbjct: 550 QGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTE 609
Query: 334 LQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLEL 393
L + + E +K QE L + + + + + + + A EE+++ L+
Sbjct: 610 LDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNF 669
Query: 394 EDLVSKQAEEIVDLEALQVVSDQLQEDAKE 423
+LV+ E L + + Q +
Sbjct: 670 VELVANLKEGTKFYNELTEILVRFQNKCSD 699
Score = 30.7 bits (68), Expect = 1.9
Identities = 27/202 (13%), Positives = 67/202 (33%), Gaps = 11/202 (5%)
Query: 2 KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMES-----QAASSLFRYR 56
+ IQ + + + + + LDE LD+ + Q S Y+
Sbjct: 433 QGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYK 492
Query: 57 EKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEM 116
+ + LD++ + ++ E + + L + + E A +
Sbjct: 493 PLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPEL------NAAIPSANPA 546
Query: 117 MTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQ 176
T+ ++L LD K++ E L D++ + D+ A V + +
Sbjct: 547 KTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALS 606
Query: 177 LEQQNMRLRETLVRLRDLSAHE 198
+ + + ++++ +
Sbjct: 607 VTELDRVYGGLTTKVQESLKKQ 628
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 37.2 bits (86), Expect = 0.019
Identities = 19/142 (13%), Positives = 51/142 (35%), Gaps = 21/142 (14%)
Query: 330 EMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQ 389
+ + +K++ +L + Q L + +L D +++ L+ +
Sbjct: 1899 DFINQVVLLINEKRD--QLEEEQLHLNIGLKKLR----------DTEAQVKDLQVSLAQK 1946
Query: 390 KLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVE---------MARSATR 440
EL+ + +++ + Q ++ Q+DA+E++++L + A
Sbjct: 1947 NRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKA 2006
Query: 441 EVIREKEAALESLADRELTIVK 462
E +E L + +
Sbjct: 2007 EPTGPLREEVEQLENAANELKL 2028
Score = 29.9 bits (67), Expect = 3.5
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 335 QKDIEEKKQENAELIKSQEKLKQRVTELEAD-CADLHEQVDAALGAEEMVQQLSVQKLEL 393
+ D +K+ + L+K Q + + ++ LE L + L + ++ L K E
Sbjct: 2321 RPDTHKKRSD---LLKIQGEFQVKLRILEKSLLNALSQASGNILDDDSVISTLETLKKET 2377
Query: 394 EDLVSKQAE 402
++ K E
Sbjct: 2378 TEIALKVEE 2386
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor
1 (RF-1), structural joint center for structural
genomics, JCSG; 2.34A {Streptococcus mutans}
Length = 371
Score = 36.0 bits (84), Expect = 0.034
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 10/99 (10%)
Query: 54 RYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVET 113
RY E L + + D F ++ +A + +E + ++ AD E
Sbjct: 25 RYEELGELLSDPDVVSDT-KRFM-ELSREEA----NSRETVAVYREYKQVVQNIADAQEM 78
Query: 114 LEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELM 152
++ + D E+ E E EL +K EE + +
Sbjct: 79 IKDASGDPELEEMAKE----ELKNSKVAKEEYEEKLRFL 113
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 34.0 bits (77), Expect = 0.14
Identities = 17/127 (13%), Positives = 49/127 (38%), Gaps = 4/127 (3%)
Query: 301 LRDLSAHEIFNN--KNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQR 358
LR+ + + + K + + + S + ++ + EL K +E+++Q
Sbjct: 286 LREQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQM 345
Query: 359 VTELEADCADLHEQVDAALGA--EEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQ 416
+ + ++ + L + + + +K +LED +E+ + + ++
Sbjct: 346 FVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAEL 405
Query: 417 LQEDAKE 423
LQ +
Sbjct: 406 LQSQGSQ 412
Score = 28.9 bits (64), Expect = 5.5
Identities = 17/102 (16%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 56 REKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLE 115
+D D ++AK E L+++ E+++Q + V+ KE +L E +
Sbjct: 305 EMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEA--ELKEAEK 362
Query: 116 MMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIE 157
+ + ++ + + +L+ K+ +++ + K E
Sbjct: 363 ELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAE 404
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 34.2 bits (79), Expect = 0.15
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 2/97 (2%)
Query: 1 MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTR 60
+ + + + ++ K + E + QS I+ + E T
Sbjct: 899 VYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTE 958
Query: 61 DLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEK 97
D Q Q K+ + L ELE+L++ +
Sbjct: 959 RKDTFFAQ--QWTGVKSSAETYKNTLLAELERLQKIE 993
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein,
ribosomal protein, RNA-binding, binding, metal-binding,
zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y
3d5c_X 3mr8_V 3ms0_V
Length = 354
Score = 33.7 bits (78), Expect = 0.17
Identities = 18/99 (18%), Positives = 41/99 (41%), Gaps = 14/99 (14%)
Query: 54 RYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVET 113
YRE L + ++ D+ ++ + A + + +++ ++ +E E L++
Sbjct: 11 EYRELEALLSDPEVLKDK-GRYQ-SLSRRYAEMGEVIGLIREYRK-VLEDLEQAESLLDD 67
Query: 114 LEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELM 152
E+ KEMA+ E + + E L ++E
Sbjct: 68 PEL----KEMAKA-------EREALLARKEALEKELERH 95
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 33.4 bits (77), Expect = 0.27
Identities = 10/53 (18%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 328 KHEMSKLQKDIEEKK---QENAELIKSQEKLKQRVTELEADCADLHEQVDAAL 377
+++ +QK+I ++ ++ +LI +EKL E+ A+ + + + +
Sbjct: 53 NKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKI 105
Score = 28.4 bits (64), Expect = 7.8
Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 16/108 (14%)
Query: 42 KIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAV 101
I SQ R + +L + I + E+ + ++L +++E +
Sbjct: 17 IIKASQKK------RGDSVELVDEIIAEYK--EWVKLRFDLDE-HNKKLNSVQKEIGKRF 67
Query: 102 EAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDI 149
+AKED DL+ E L E E + + A + + +
Sbjct: 68 KAKEDAKDLIA--EKEKLSNEKKE-----IIEKEAEADKNLRSKINQV 108
>2b3t_B RF-1, peptide chain release factor 1; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: e.38.1.1
Length = 360
Score = 32.9 bits (76), Expect = 0.32
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 14/99 (14%)
Query: 54 RYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVET 113
R+ E L + + DQ F+ + A L +Q E E +++
Sbjct: 15 RHEEVQALLGDAQTIADQ-ERFR-ALSREYAQLSDVSRCFTDWQQ-VQEDIETAQMMLDD 71
Query: 114 LEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELM 152
EM +EMA++ EL AKEK E+L ++++
Sbjct: 72 PEM----REMAQD-------ELREAKEKSEQLEQQLQVL 99
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A
{Saccharomyces cerevisiae}
Length = 956
Score = 33.1 bits (74), Expect = 0.33
Identities = 40/308 (12%), Positives = 93/308 (30%), Gaps = 13/308 (4%)
Query: 193 DLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLYDLSAHE 252
D+ IF N+ F S D + H + L + N + + S
Sbjct: 483 DIFQDPIFGNSDFQSYFNDKTIHSKGSPILSFDILPGFNKIYKNKTNFYSLLIERPSQLT 542
Query: 253 IFNNKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNN 312
++ N + + ++L +L + F +F + F
Sbjct: 543 FASSHNPDTHPTQKQESEGPLQMSQLDTTQLNELLKQQSFEYVQFQTLSN-------FQI 595
Query: 313 KNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQ 372
+++ + +K + + K E IK + + E
Sbjct: 596 LLSVFNKIFEKLEMKKSSRGYILHQLNLFKITLDERIKKSKIDDADKFIRDNQPIKKEEN 655
Query: 373 VDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEV 432
+ G + +++ L + E + + + ED E E + +
Sbjct: 656 IVNEDGPNTSRRTKRPKQIRLLSIADSSDESSTEDSNVFKKDGESIEDGAYGENEDENDS 715
Query: 433 EMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELTIVKFRELN 492
EM + + + + ++ + + A L+ + + ++T + ++L
Sbjct: 716 EMQEQLKSMINELINSKISTFLRDQM------DQFELKINALLDKILEEKVTRIIEQKLG 769
Query: 493 SLDEKVST 500
S K ST
Sbjct: 770 SHTGKFST 777
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 32.4 bits (74), Expect = 0.43
Identities = 19/145 (13%), Positives = 58/145 (40%), Gaps = 9/145 (6%)
Query: 4 EIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLD 63
+ E + + IK + +++ QS +++ E + S + ++ +
Sbjct: 130 DYSIFLENEN-ILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSI-----QYKKEYE 183
Query: 64 EMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEA---VEAKEDTADLVETLEMMTLD 120
E+K ++++ ++ + ++++ + EL+ K E + E++ +
Sbjct: 184 ELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNE 243
Query: 121 KEMAEERAETLQVELDLAKEKIEEL 145
E + + + + K+K +EL
Sbjct: 244 TEQLKAEEKKILNQFLKIKKKRKEL 268
Score = 31.2 bits (71), Expect = 1.1
Identities = 18/104 (17%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Query: 1 MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTR 60
K E ++LKEK++ + E ++ + +L +++ S RY E
Sbjct: 178 YKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGS--RYDEAEG 235
Query: 61 DLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAK 104
+ + + +Q + KI+ +K++ ++L ++ + V
Sbjct: 236 RFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDH 279
Score = 30.0 bits (68), Expect = 2.8
Identities = 23/147 (15%), Positives = 53/147 (36%), Gaps = 10/147 (6%)
Query: 295 NKFDSRLRD----LSAHEIFNNKNKFD---SRLRDLSAHEKHEMSKLQKDIE---EKKQE 344
+ +D L I F + ++A E+S++ +++ + K+E
Sbjct: 122 DGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKE 181
Query: 345 NAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEI 404
EL + EKL + TE + +H ++ V + ++ +
Sbjct: 182 YEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVIN 241
Query: 405 VDLEALQVVSDQLQEDAKEIEIELKEE 431
+ E L+ ++ +I+ + KE
Sbjct: 242 NETEQLKAEEKKILNQFLKIKKKRKEL 268
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 30.6 bits (69), Expect = 0.64
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 324 SAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALG----A 379
SA + EM+ ++++ K+ + +++L++++ L + DL QV A A
Sbjct: 8 SAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADA 67
Query: 380 EEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKE 430
EE QL K++LE V + + + D E ++ +L +++E E E
Sbjct: 68 EERCDQLIKNKIQLEAKVKEMNKRLEDEEE---MNAELTAKKRKLEDECSE 115
Score = 29.5 bits (66), Expect = 1.7
Identities = 21/80 (26%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 330 EMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQ 389
E + LQ ++ ++ A+ + ++L + +LEA +++++++ EEM +L+ +
Sbjct: 49 EKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDE---EEMNAELTAK 105
Query: 390 KLELEDLVSKQAEEIVDLEA 409
K +LED S+ +I DLE
Sbjct: 106 KRKLEDECSELKRDIDDLEL 125
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 31.7 bits (73), Expect = 0.82
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 317 DSRLRDLSAHE---KHEMSKLQKDIEEKKQENAE-LIKSQEKLKQRVTELEADCADLHEQ 372
D +++L + E +++ K + + E E LI + L + LE + +
Sbjct: 34 DREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEAR 93
Query: 373 VDAAL 377
++A L
Sbjct: 94 LEALL 98
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 31.2 bits (71), Expect = 1.1
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 294 NNKFDSRLRDLSAHEI----FNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQEN---A 346
F + + SA EI K + + S + + A
Sbjct: 117 RENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYA 176
Query: 347 ELIKSQEKLKQRVTELEADCADLHEQVDAAL 377
+++K E L+ + +LE D D ++++A L
Sbjct: 177 DMLKRVEPLRNELQKLEDDAKDNQQKLEALL 207
Score = 30.4 bits (69), Expect = 2.1
Identities = 10/94 (10%), Positives = 32/94 (34%), Gaps = 9/94 (9%)
Query: 56 REKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLE 115
++ + ++ + + + A+ + AD+++
Sbjct: 126 NFSAEEISD--AIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLK--R 181
Query: 116 MMTLDKEMAEERAETLQVELDLAKEKIEELTLDI 149
+ L E+ + L+ + ++K+E L L +
Sbjct: 182 VEPLRNELQK-----LEDDAKDNQQKLEALLLQV 210
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding,
protein transport; HET: ANP; 3.00A {Chaetomium
thermophilum} PDB: 3iqx_A* 3ibg_A*
Length = 334
Score = 30.7 bits (69), Expect = 1.5
Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 361 ELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQED 420
+ +DC + + +++L ++ + + EE+ E L+ S+ L +
Sbjct: 265 KPGSDCEQCTARRRMQKKYLDQIEELYDEEFNV-VKMPLLVEEVRGKERLEKFSEMLIKP 323
Query: 421 AKEIEIELKEE 431
E
Sbjct: 324 FVPPEHHHHHH 334
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 30.7 bits (69), Expect = 1.6
Identities = 23/135 (17%), Positives = 61/135 (45%), Gaps = 2/135 (1%)
Query: 323 LSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEM 382
LS E+ +KL++ +E++ E L + + ++ ELE ++ + +A + E+
Sbjct: 88 LSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQ 147
Query: 383 VQQLSVQKLELEDLVSKQAEEIVDL-EALQVVSDQLQEDAKEIEIELKEEVE-MARSATR 440
L+ +++++ ++ L ALQ + + E +++++ + +
Sbjct: 148 FDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEV 207
Query: 441 EVIREKEAALESLAD 455
E +E A++ +A
Sbjct: 208 ERDGMQEEAIQEIAG 222
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA
polymerase, stringent response, PPGPP, riken structural
genomics/proteomics initiative; 2.00A {Escherichia coli}
SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Length = 151
Score = 29.5 bits (66), Expect = 1.6
Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 63 DEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKE 122
E + Q A F+ + + L+ E+++ Q+ D D E +L+
Sbjct: 28 GEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELR 87
Query: 123 MAEERAETLQVELDLAKEKIEE 144
+ + ++ +++ +K+E+
Sbjct: 88 NRDRERKLIK-KIEKTLKKVED 108
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.9
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 327 EKHEMSKLQKDIEEKKQENA-EL-IKSQ 352
EK + KLQ ++ ++A L IK+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKAT 45
Score = 28.4 bits (62), Expect = 4.5
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 15/45 (33%)
Query: 340 EKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQ 384
EK+ +K KL+ + D A AL + ++
Sbjct: 18 EKQA-----LK---KLQASLKLYADDSA-------PALAIKATME 47
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation;
2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X
2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Length = 365
Score = 30.3 bits (69), Expect = 2.0
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 25/122 (20%)
Query: 61 DLDEMKIQLDQSAEFKAKIME---------SQAGLKRELEKLKQEKQEAVEAKEDTADLV 111
D+ + + +L E + ++ + ++ + +E +L++ + D L+
Sbjct: 18 DIPQKETRL---KELERRLEDPSLWNDPEAARK-VSQEAARLRRTVDTFRSLESDLQGLL 73
Query: 112 ETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSC-----DGAGDG 166
E +E + E E L+ EL+ A +K++EL L EK+ GAG G
Sbjct: 74 ELMEEL------PAEEREALKPELEEAAKKLDELYHQTLLNFPHAEKNAILTIQPGAG-G 126
Query: 167 TE 168
TE
Sbjct: 127 TE 128
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 30.2 bits (67), Expect = 2.0
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 324 SAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGA--EE 381
+ S L + EE+++ A++ K + +++Q + + +A L E+
Sbjct: 307 KNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQ 366
Query: 382 MVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQE 419
M + L Q ELE+ + +E + EA Q + +Q
Sbjct: 367 MKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNS 404
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 30.3 bits (69), Expect = 2.1
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 315 KFDSRLRDLSA------HEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCAD 368
K D+ R HE+++++ +K + EL+ ++ +R+ ELE + +
Sbjct: 35 KLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEE 94
Query: 369 LHEQVDAAL 377
L +++D L
Sbjct: 95 LKKKIDYYL 103
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 30.4 bits (68), Expect = 2.1
Identities = 8/63 (12%), Positives = 22/63 (34%), Gaps = 7/63 (11%)
Query: 75 FKAKIMESQAGLKRELEKLKQEKQEAVEAK-EDTADLVETLE---MMTLDKEM---AEER 127
S+A L ++ ++++++ D +L+ E + + R
Sbjct: 553 VGTYYNTSKALLDTGFWLMEMLEEDSLKLAARDLHELLRCWENYHRLWTVRLHMQHIAFR 612
Query: 128 AET 130
E+
Sbjct: 613 EES 615
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA
complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Length = 438
Score = 30.3 bits (68), Expect = 2.2
Identities = 37/188 (19%), Positives = 73/188 (38%), Gaps = 11/188 (5%)
Query: 18 KYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKA 77
K + K + ++++ + + + E +AA L E +L + +L+ A+
Sbjct: 3 KSKSKKKAAKAQEVEVKEPVKEPEPLPELEAAEDLQDLPEPDPELLASEPELEDLADPLD 62
Query: 78 KIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDL 137
+A L E L++E++E K T+D V E+ + TL+ E+DL
Sbjct: 63 LEGPLEADLLPEEGLLEEEEEELSLPKVSTSDPVRQYL-----HEIGQVPLLTLEEEIDL 117
Query: 138 AK------EKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRL 191
A+ E I++L+ L + I + GT E+ + + E +
Sbjct: 118 ARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTVEEVDGK 177
Query: 192 RDLSAHEI 199
E+
Sbjct: 178 LKSLPKEL 185
Score = 29.9 bits (67), Expect = 2.4
Identities = 25/194 (12%), Positives = 67/194 (34%), Gaps = 13/194 (6%)
Query: 315 KFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVD 374
K S+ + A E +++ + E AE ++ + + E + DL + +D
Sbjct: 3 KSKSKKKAAKAQEVEVKEPVKEPEPLPELEAAEDLQDLPEPDPELLASEPELEDLADPLD 62
Query: 375 AALGA-----------EEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKE 423
EE ++LS+ K+ D V + EI + L + ++ + A++
Sbjct: 63 LEGPLEADLLPEEGLLEEEEEELSLPKVSTSDPVRQYLHEIGQVPLLTL--EEEIDLARK 120
Query: 424 IEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADREL 483
+E ++ +++ + + +E + + + E +
Sbjct: 121 VEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTVEEVDGKLKS 180
Query: 484 TIVKFRELNSLDEK 497
+ + + +
Sbjct: 181 LPKELKRYLHIARE 194
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein,
targeting factor, ATP-bindi TRC40, ARSA,
nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus
jannaschii} PDB: 3ug6_A*
Length = 349
Score = 29.9 bits (67), Expect = 2.3
Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 366 CADLHEQVDAALGA-EEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEI 424
C E L +E + + L E +E L+ ++ L + ++
Sbjct: 286 CRARRELQLKRLEMIKEKFGDKVIAYVPL------LRTEAKGIETLKQIAKILYGEEEKE 339
Query: 425 EIELKEEV 432
E +++++V
Sbjct: 340 EQKIEQKV 347
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 30.2 bits (69), Expect = 2.3
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 318 SRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQE-----KLKQRVTELEADCADLHEQ 372
S++R S + +L++ ++E ++E ++SQE L+ L D +
Sbjct: 383 SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKS 442
Query: 373 VDAALGAEEMV 383
G E
Sbjct: 443 WKEKQGQENSE 453
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 30.2 bits (69), Expect = 2.4
Identities = 34/145 (23%), Positives = 68/145 (46%), Gaps = 27/145 (18%)
Query: 1 MKAEIQDLKEKLDTMKIKY---REKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYRE 57
++AEI L E++ ++ ++ RE R L E + +LD+ + A
Sbjct: 435 IEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDE-----VRREIELA--------- 480
Query: 58 KTRDLDEMKIQLDQSAEFK-AKIMESQAGLKRELEKLKQEK--QEAVEAKEDTADLVETL 114
R D L+++AE + ++ + +A ++ EKL+ + + V ED A++V
Sbjct: 481 -ERQYD-----LNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTE-EDIAEIVSRW 533
Query: 115 EMMTLDKEMAEERAETLQVELDLAK 139
+ + K + ER + L++E +L K
Sbjct: 534 TGIPVSKLLEGEREKLLRLEEELHK 558
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 2.8
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 32 QLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRE-L 90
+L Q E K E Q R +E M+ + + A+ K +E + E +
Sbjct: 79 RLTQEPESIRKWREEQRK----RLQELDAASKVMEQEWREKAK---KDLEEWNQRQSEQV 131
Query: 91 EKLKQEKQEAVEA--KEDTADLV 111
EK K + A +A ++ AD++
Sbjct: 132 EKNKINNRIADKAFYQQPDADII 154
Score = 28.6 bits (63), Expect = 4.8
Identities = 14/97 (14%), Positives = 43/97 (44%), Gaps = 25/97 (25%)
Query: 339 EEKKQENAELIKS-QEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQ-KLELEDL 396
++ + E I+ +E+ ++R+ EL+A ++ M Q+ + K +LE+
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQELDA-------------ASKVMEQEWREKAKKDLEEW 123
Query: 397 VSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVE 433
+Q+E++ ++ + + + + ++ +
Sbjct: 124 NQRQSEQV----------EKNKINNRIADKAFYQQPD 150
Score = 28.2 bits (62), Expect = 6.8
Identities = 10/61 (16%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 74 EFKAKIMESQAGLKRELEKLKQE-KQEAVEAKEDTADLVET--LEMMTLDKEMAEERAET 130
E + ++ E A K ++ +++ K++ E + ++ VE + DK ++
Sbjct: 93 EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
Query: 131 L 131
+
Sbjct: 153 I 153
Score = 27.8 bits (61), Expect = 7.4
Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 313 KNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQ-EKLKQRVTELEADCADLHE 371
+ + RL++L A K + E+ K++ E + Q E++++ ++
Sbjct: 91 REEQRKRLQELDAASKVMEQEW---REKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQ 147
Query: 372 QVDAAL 377
Q DA +
Sbjct: 148 QPDADI 153
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 29.9 bits (68), Expect = 2.9
Identities = 12/61 (19%), Positives = 30/61 (49%), Gaps = 19/61 (31%)
Query: 86 LKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEEL 145
L+++L+++++EK AV+++E E+A +L+ +E++E+
Sbjct: 399 LEQKLDEVRKEKDAAVQSQE-------------------FEKAASLRDTEQRLREQVEDT 439
Query: 146 T 146
Sbjct: 440 K 440
Score = 29.9 bits (68), Expect = 3.3
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 318 SRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQE-----KLKQRVTELEADCADLHEQ 372
S++R S + +L++ ++E ++E ++SQE L+ L D +
Sbjct: 383 SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKS 442
Query: 373 VDAALGAEEMV 383
G E
Sbjct: 443 WKEKQGQENSE 453
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton,
hemidesmosomes epidermolysis bullosa, structural
protein; 2.05A {Homo sapiens} PDB: 2odu_A
Length = 235
Score = 29.3 bits (65), Expect = 3.1
Identities = 31/183 (16%), Positives = 69/183 (37%), Gaps = 8/183 (4%)
Query: 20 REKTRDLDEMKIQLDQSAEFK-----AKIMESQAASSLFRYREKTRDLDEMKIQLDQSAE 74
R +E++I Q +FK AK + + +++ E ++K+
Sbjct: 37 RRFPSSFEEIEILWSQFLKFKEMELPAKEADKNRSKGIYQSLEGAVQAGQLKVPPGYHPL 96
Query: 75 FKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVET---LEMMTLDKEMAEERAETL 131
K E EK + + E +EA + ++ L L++ A +++
Sbjct: 97 DVEKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAGLAEEQLNQADALLQSDVR 156
Query: 132 QVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRL 191
+ ++ E+ D++ + I + + H Q +Q+ ++ RL + LV +
Sbjct: 157 LLAAGKVPQRAGEVERDLDKADSMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHKRLVAI 216
Query: 192 RDL 194
R
Sbjct: 217 RTE 219
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 30.0 bits (67), Expect = 3.2
Identities = 13/160 (8%), Positives = 52/160 (32%), Gaps = 11/160 (6%)
Query: 2 KAEIQDLKEKLDTMKIKYREKTRDLD-EMKIQLDQSAEFKAKIMESQAASSLFRYREKTR 60
+ L+ +++ + + ++ E+ + ++ + +
Sbjct: 590 DHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLG-------FPRFNK 642
Query: 61 DLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLD 120
+ + + ++ + + E ++ + + E+ E L M +
Sbjct: 643 EGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIW 702
Query: 121 KEMAEERAETLQVELDLAKEKIEEL--TLDIELMKADIEK 158
+ +ER + L + + ++E L ++ D++
Sbjct: 703 S-LTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKA 741
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 29.8 bits (68), Expect = 3.4
Identities = 17/93 (18%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 293 NNNKFDSRL--RDLSAHEIFNNKNKFDSRLRDLSA------HEKHEMSKLQKDIEEKKQE 344
+ RL RD + + + D R R++ E++++SK ++ + ++
Sbjct: 10 KPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKD 69
Query: 345 NAELIKSQEKLKQRVTELEADCADLHEQVDAAL 377
E+ ++LK+ + LE + + E++ L
Sbjct: 70 TTEIQNRVKELKEEIDRLEEELRKVEEELKNTL 102
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 29.5 bits (65), Expect = 3.5
Identities = 33/229 (14%), Positives = 71/229 (31%), Gaps = 8/229 (3%)
Query: 214 AHEIFNNNKF-DSRLRDLSAHEIFNNNKFDSRLYDLSAHEIFNNKNKFDSRLRDLSAHEI 272
A E+F + F D K D L
Sbjct: 364 AIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVK 423
Query: 273 FNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEKHEMS 332
+K + + ++ + + A EI K + D ++
Sbjct: 424 AGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLT 483
Query: 333 KLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLE 392
+ +K+IE ++ + S + L + + E +E ++QL+ +
Sbjct: 484 EKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERS------YQEHLKQLTEKMEN 537
Query: 393 LEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATRE 441
+ K+ E + L+ LQ L+E ++ +K E++ ++ R
Sbjct: 538 DRVQLLKEQERTLALK-LQEQEQLLKEGFQKESRIMKNEIQDLQTKMRR 585
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1
a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F*
2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Length = 423
Score = 29.5 bits (66), Expect = 3.8
Identities = 25/156 (16%), Positives = 51/156 (32%), Gaps = 8/156 (5%)
Query: 331 MSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQK 390
EE ++ + + D + L EE + L + K
Sbjct: 15 QETEVLVQEEAEELPEFPEGEPDPDLEDPDLALEDDLLDLPEEGEGLDLEEEEEDLPIPK 74
Query: 391 LELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSA------TREVIR 444
+ D V + EI + L + ++ E A+++E ++ +++ REV+R
Sbjct: 75 ISTSDPVRQYLHEIGQVPLLTL--EEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVR 132
Query: 445 EKEAALESLADRELTIVKFRELVIREKEAALESLAD 480
K + + E + L+SL
Sbjct: 133 AKILGSARVRHIPGLKETLDPKTVEEIDQKLKSLPK 168
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 29.4 bits (66), Expect = 4.5
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 335 QKDIEEKKQENAELIKSQEKLKQRVTELEADC-ADLHEQVDAALGAEEMVQQLSVQKLEL 393
+++ K+++ LIK + K ++ LE +L+ L +E++ L+ K E
Sbjct: 2141 NAEMQRKRED---LIKLNTEYKLKLKNLEKRLLEELNNSQGNMLENDELMVTLNNLKKEA 2197
Query: 394 EDLVSKQAE 402
++ K +E
Sbjct: 2198 MNIEKKLSE 2206
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 29.3 bits (65), Expect = 5.1
Identities = 23/173 (13%), Positives = 53/173 (30%), Gaps = 19/173 (10%)
Query: 379 AEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVS-----------DQLQEDAKEIEIE 427
A+ ++ + + L+ + I D +++ D L ++ +E
Sbjct: 617 AQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEA 676
Query: 428 LKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAA------LESLADR 481
LK ++E R E+ ++LA+ L+ + D
Sbjct: 677 LKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDN 736
Query: 482 ELTIVKFRELNSLDEKVSTENIEKCVTYFNTFYPVLFPDTKFSHVGHLLMDYV 534
+ + + D +E+ F+ + D +F H L+
Sbjct: 737 MIVLTPSDHMLVPDFPGLSEDGITIT--FDREVALAREDAQFITWEHPLIRNG 787
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 28.2 bits (62), Expect = 6.1
Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 3/128 (2%)
Query: 330 EMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQ 389
++S+LQK +EE + +L++ TE+ + L +E + L
Sbjct: 7 KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNREL---QERNRILENS 63
Query: 390 KLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAA 449
K + + + + + ++ D + L+EEV+ + +V E++ A
Sbjct: 64 KSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEA 123
Query: 450 LESLADRE 457
+ L E
Sbjct: 124 QDMLNHSE 131
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Length = 246
Score = 28.3 bits (64), Expect = 6.6
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 411 QVVSDQLQEDAKEI-EIELKEEVEMARSATREVIREKEAALESLADRELTIV-----KFR 464
+ L++ K+ + ++ VE A + V+ E E+ +V KFR
Sbjct: 173 TESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEI----EVGVVTVENPKFR 228
Query: 465 ELVIREKEAALESLADRE 482
L E +A L +LA+R+
Sbjct: 229 ILTEAEIDAHLVALAERD 246
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 28.7 bits (63), Expect = 6.8
Identities = 53/395 (13%), Positives = 118/395 (29%), Gaps = 12/395 (3%)
Query: 1 MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEF---KAKIMESQAAS---SLFR 54
M ++I + L+ + Y E + +LD AE KA I ES L +
Sbjct: 336 MVSDINNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQ 395
Query: 55 YREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETL 114
+T L E+K L + F++ + Q +++ ++ + + +
Sbjct: 396 KDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKI 455
Query: 115 EMMTLD-KEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQ 173
+ + ++R E L+ L E I++L L+ A +GA + + +
Sbjct: 456 CDQWDNLGALTQKRREALERTEKL-LETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIV 514
Query: 174 IKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAH 233
E Q + + A + N + ++
Sbjct: 515 HTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQ 574
Query: 234 EIFNNNKFDSRLYDLSAHEIFNNKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEIFN 293
EI + +L + + R + N ++
Sbjct: 575 EINGKWEHVRQLVPRRDQALMEEHARQQQNERLR--KQFGAQANVIGPWIQTKMEEIGRI 632
Query: 294 NNKFDSRLRDLSAH--EIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKS 351
+ + L D H + + + ++ L + L D + +
Sbjct: 633 SIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKHTNYTMEHIRVG 692
Query: 352 QEKLKQRVTELEADCADLHEQVDAALGAEEMVQQL 386
E+L + + + DA ++E + +
Sbjct: 693 WEQLLTTIARTINEVENQILTRDAKGISQEQMNEF 727
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular
mimicry, translation; 1.81A {Escherichia coli} SCOP:
e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Length = 365
Score = 28.4 bits (64), Expect = 7.0
Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 26/149 (17%)
Query: 35 QSAEFKAKIMESQAASSLFR----YREKTRDLDEMKIQLDQSAEF-----KA-KIMESQA 84
+ +I + S + R Y K L+E+ +L + + +A + + ++
Sbjct: 3 EINPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAEL-EQPDVWNEPERAQALGKERS 61
Query: 85 GLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEE 144
L+ ++ L Q KQ ED + L+E L + D+E E ELD +EK+ +
Sbjct: 62 SLEAVVDTLDQMKQGL----EDVSGLLE-LAVEADDEETFNE----AVAELDALEEKLAQ 112
Query: 145 LTLDIELMKADIEKSC-----DGAGDGTE 168
L C G+G GTE
Sbjct: 113 LEFRRMFSGEYDSADCYLDIQAGSG-GTE 140
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 88
Score = 26.5 bits (59), Expect = 7.3
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 333 KLQKDIEEKKQENAELIKSQEKLKQRVTELE 363
+Q + ++ E L K +E+LK ++ +L
Sbjct: 56 SVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
c.26.1.1 PDB: 1li7_A 1u0b_B
Length = 461
Score = 28.7 bits (65), Expect = 7.5
Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 16/112 (14%)
Query: 47 QAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMES--------QA-----GLKRELEKL 93
QA ++L R R D+ + F+A+ +E+ +A + RE+ +L
Sbjct: 311 QARAALERLYTALRGTDK-TVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRL 369
Query: 94 KQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEEL 145
K E A A L + ++ L ++ E ++ D +IE L
Sbjct: 370 KAEDMAAANAMASH--LRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEAL 419
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 28.4 bits (64), Expect = 8.1
Identities = 12/70 (17%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 59 TRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMT 118
T +DE IQ EF K ++ A + ++ ++ K+ +++ L+ ++
Sbjct: 481 TEPVDEYCIQ--ALPEFDGKRFQNVAKEGVKFDESEKTKESREAIEKEFEPLLNWMKDKA 538
Query: 119 LDKEMAEERA 128
L ++ +
Sbjct: 539 LKDKIEKAVV 548
>3gaa_A Uncharacterized protein TA1441; the protein with unknown function
from thermoplasma acidophi structural genomics,PSI,
MCSG; 2.70A {Thermoplasma acidophilum}
Length = 252
Score = 28.2 bits (62), Expect = 8.3
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 402 EEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREV 442
E I L++ +D L+E K ++ ++K+ E + +
Sbjct: 204 EAINKAYNLKIKTDLLEEQVKALDEQIKKIEEQYKELQEKQ 244
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4
chimera; alpha-helical coiled coil, disorder, salt
links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB:
1nkn_A 3bat_A
Length = 89
Score = 26.5 bits (58), Expect = 8.4
Identities = 15/81 (18%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 324 SAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQV----DAALGA 379
A ++ EM + K +++ K++ A+ + +++L+++ L DL + D
Sbjct: 9 IARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEEL 68
Query: 380 EEMVQQLSVQKLELEDLVSKQ 400
L + L+ LV ++
Sbjct: 69 LSKNYHLENEVARLKKLVGER 89
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 28.2 bits (63), Expect = 9.1
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 64 EMKIQ--LDQSAEFKAKI-MESQAGLKRELEKLKQEKQEAVEAK-EDTADLVETLE---M 116
+++Q +D+ A A I ++ L+R LE L K++ + D +L+ E
Sbjct: 518 LVRLQKIMDEYAAGIATIYKTNEKMLQRALELLAFLKEDLEKLAARDLHELMRAWELVHR 577
Query: 117 MTLDKEM---AEERAET 130
+ + R ET
Sbjct: 578 VWTAEAHVRHMLFRKET 594
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 28.4 bits (64), Expect = 9.7
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 14/75 (18%)
Query: 317 DSRLRDLSA------HEKHEMSKL--------QKDIEEKKQENAELIKSQEKLKQRVTEL 362
LR L EK +++ ++ + L ++++++T L
Sbjct: 76 WQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLL 135
Query: 363 EADCADLHEQVDAAL 377
A L EQ
Sbjct: 136 YPKEAQLEEQFYLRA 150
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.130 0.346
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,304,784
Number of extensions: 584202
Number of successful extensions: 2596
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2327
Number of HSP's successfully gapped: 444
Length of query: 640
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 540
Effective length of database: 3,909,693
Effective search space: 2111234220
Effective search space used: 2111234220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.6 bits)