RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15551
(640 letters)
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae
[TaxId: 727]}
Length = 205
Score = 29.1 bits (64), Expect = 1.3
Identities = 19/164 (11%), Positives = 52/164 (31%), Gaps = 2/164 (1%)
Query: 211 DLSAHEIFNNNKFD-SRLRDLSAHEIFNNNKFDSRLY-DLSAHEIFNNKNKFDSRLRDLS 268
D+ A E+ + S++ + +I +R +K ++ L
Sbjct: 33 DVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDKLWLNNLLHPAI 92
Query: 269 AHEIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEK 328
+ + + + N R L + ++ + + +
Sbjct: 93 RERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQRDNNNFEQI 152
Query: 329 HEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQ 372
+ Q +E+ + ++I + +L Q + L+ +LH+
Sbjct: 153 QRIMNSQVSQQERLKWADDVINNDAELAQNLPHLQQKVLELHQF 196
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 29.6 bits (66), Expect = 1.3
Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 6/96 (6%)
Query: 326 HEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQ 385
E ++++ + + + E+++ + + R+ E+ + Q D AE +
Sbjct: 289 AEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGE 348
Query: 386 LSVQKLELEDLVSKQAE-----EIVDLEAL-QVVSD 415
L + E+E L K V E + ++VS
Sbjct: 349 LPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSR 384
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal
domain {Streptococcus pneumoniae [TaxId: 1313]}
Length = 241
Score = 28.9 bits (64), Expect = 1.6
Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 410 LQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIR 469
+ D + LK + S + +R + + + +++T+ KFR+L++
Sbjct: 144 MHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLE 203
Query: 470 EKEAALESLADRELTIVKFRELNSL-DEKVSTEN 502
+ + + + + E+N + D K T +
Sbjct: 204 YMKKEYPEMTEYVFSEEELAEINRIKDTKFGTWD 237
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4
[TaxId: 9606]}
Length = 144
Score = 27.5 bits (61), Expect = 3.3
Identities = 14/104 (13%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 1 MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREK-T 59
++A + + ++L K + E+ L + + + + +++ + + R +
Sbjct: 39 LRALMDETMKELKAYKSELEEQ---LTPVAEETRARLSKELQAAQARLGADMEDVRGRLV 95
Query: 60 RDLDEMKIQLDQSAE-FKAKIMESQAGLKRELEKLKQEKQEAVE 102
+ E++ L QS E + ++ L++ L + + Q+ +
Sbjct: 96 QYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLA 139
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 27.7 bits (61), Expect = 3.9
Identities = 16/140 (11%), Positives = 35/140 (25%)
Query: 317 DSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAA 376
+ R + + E+K A L ++ D ++
Sbjct: 132 EQRRQRHDLERIRIANDTTLSPEQKAARLAALDAQLTPDERAQQAALHAQQDAVTKIADL 191
Query: 377 LGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMAR 436
A Q+ Q + + + + + A+ I + R
Sbjct: 192 QKAGATPDQMRAQIAQTLGPEAAARAAQMQQDDEAWQTRYQAYAAERDRIAAQGLAPQDR 251
Query: 437 SATREVIREKEAALESLADR 456
A +R++ A R
Sbjct: 252 DARIAQLRQQTFTAPGEAIR 271
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 27.7 bits (61), Expect = 4.3
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 417 LQEDAKEIEIELKEE-VEMARSATREVIREKEAALESLADRELTIV-----KFRELVIRE 470
L++ K+ E+ VE A + V+ E E+ +V KFR L E
Sbjct: 178 LEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSE----IEVGVVTVENPKFRILTEAE 233
Query: 471 KEAALESLADR 481
+A L +LA+R
Sbjct: 234 IDAHLVALAER 244
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 26.0 bits (57), Expect = 4.3
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 333 KLQKDIEEKKQENAELIKSQEKLKQRVTELE 363
+Q + ++ E L K +E+LK ++ +L
Sbjct: 56 SVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 231
Score = 26.9 bits (58), Expect = 7.4
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 426 IELKEEVEMARSATREVIREKEAALESLADRE 457
+EL E +M R R+ ++ + + D+E
Sbjct: 5 VELPETHQMLRQTCRDFAEKELVPIAAQLDKE 36
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 26.8 bits (59), Expect = 8.2
Identities = 39/244 (15%), Positives = 76/244 (31%), Gaps = 27/244 (11%)
Query: 139 KEKIEELTLD--IELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDL-S 195
EKI EL + +E + A ++S D + + + + L L
Sbjct: 245 IEKIAELVKEKRVEGISALRDES-----DKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQV 299
Query: 196 AHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLYDLSAHEIFN 255
+ I + + ++ +I R ++ IF K R + L A +
Sbjct: 300 SFGINMVALHHGQPKIMNLKDIIAAF-VRHRREVVTRRTIFELRKARDRAHILEALAVAL 358
Query: 256 NKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNKNK 315
L + + + + + D+ + E
Sbjct: 359 ANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGL 418
Query: 316 F-----------DSRLRDLSAHEKHEMSKLQKDIEEKKQENAEL---IKSQEKLKQRV-T 360
+ D RL+ L+ E KL + +E + AEL + S ++L + +
Sbjct: 419 YYLTEQQAQAILDLRLQKLTGLEH---EKLLDEYKELLDQIAELLRILGSADRLMEVIRE 475
Query: 361 ELEA 364
ELE
Sbjct: 476 ELEL 479
>d1f32a_ d.62.1.1 (A:) Pepsin inhibitor-3 {Pig roundworm (Ascaris
suum) [TaxId: 6253]}
Length = 147
Score = 26.1 bits (57), Expect = 8.6
Identities = 3/36 (8%), Positives = 10/36 (27%)
Query: 319 RLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEK 354
L + + +E+ ++ + K
Sbjct: 25 PWTMLEGDDIQVGKEFAARVEDCTNVKHDMAPTCTK 60
>d2im9a1 d.3.1.13 (A:49-352) Hypothetical protein Lpg0564
{Legionella pneumophila [TaxId: 446]}
Length = 305
Score = 26.5 bits (58), Expect = 9.4
Identities = 26/143 (18%), Positives = 46/143 (32%), Gaps = 4/143 (2%)
Query: 255 NNKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNKN 314
N+ F L+ N K + +R S N K L+D++ K
Sbjct: 84 NSLESFQECLKHT---RYKNGKRSYINRNHFTSIDWNNYNQK-RGLLKDITFSIRNEKKQ 139
Query: 315 KFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVD 374
L + K I +KQ+ E K +LK + LE +++
Sbjct: 140 PVALYANALINKPQWYNHKTIDTIRLQKQDKNEQEKRLVELKAKGKTLETSLSNVPYIPF 199
Query: 375 AALGAEEMVQQLSVQKLELEDLV 397
AL +E ++ ++
Sbjct: 200 TALFSENKPNLHLFSQIPNGAVI 222
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal
domain {Bacillus anthracis [TaxId: 1392]}
Length = 57
Score = 24.4 bits (53), Expect = 9.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 330 EMSKLQKDIEEKKQENAELIK 350
++KL IE KK+E L++
Sbjct: 2 NVTKLNDRIEAKKKELIYLVE 22
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.130 0.346
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,211,315
Number of extensions: 106952
Number of successful extensions: 492
Number of sequences better than 10.0: 1
Number of HSP's gapped: 480
Number of HSP's successfully gapped: 95
Length of query: 640
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 549
Effective length of database: 1,158,166
Effective search space: 635833134
Effective search space used: 635833134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.5 bits)