Query psy15553
Match_columns 489
No_of_seqs 289 out of 719
Neff 5.1
Searched_HMMs 29240
Date Sat Aug 17 00:15:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15553.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15553hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2g2k_A EIF-5, eukaryotic trans 100.0 1.3E-64 4.5E-69 470.6 15.9 150 2-151 1-150 (170)
2 2e9h_A EIF-5, eukaryotic trans 100.0 5.2E-63 1.8E-67 455.0 15.4 147 3-149 9-155 (157)
3 2d74_B Translation initiation 100.0 5.6E-45 1.9E-49 332.7 10.6 116 12-135 25-140 (148)
4 1nee_A EIF-2-beta, probable tr 100.0 2.9E-45 9.7E-50 331.5 7.7 118 9-134 20-137 (138)
5 2iu1_A EIF5, eukaryotic transl 100.0 3.3E-42 1.1E-46 331.0 17.0 194 236-489 3-200 (208)
6 3cw2_K Translation initiation 100.0 4.8E-46 1.6E-50 337.0 -9.4 123 5-134 16-138 (139)
7 2ful_A EIF-5, eukaryotic trans 100.0 2.1E-34 7.2E-39 270.7 14.0 156 239-437 10-171 (177)
8 1paq_A Translation initiation 99.9 5.9E-23 2E-27 194.3 12.7 96 333-433 91-187 (189)
9 3jui_A Translation initiation 99.9 3.3E-23 1.1E-27 195.1 7.6 95 335-433 87-181 (182)
10 3d3m_A Eukaryotic translation 99.8 4.9E-20 1.7E-24 171.1 10.4 90 333-426 79-168 (168)
11 1k8b_A EIF-2-beta, probable tr 99.8 3.8E-20 1.3E-24 141.3 5.0 52 23-80 1-52 (52)
12 3l6a_A Eukaryotic translation 99.7 1.2E-17 4.2E-22 172.2 11.2 112 310-426 230-364 (364)
13 1k81_A EIF-2-beta, probable tr 99.3 4.8E-13 1.6E-17 94.8 2.5 35 98-134 1-35 (36)
14 1ug3_A EIF4GI, eukaryotic prot 98.9 1E-09 3.5E-14 111.6 7.0 89 309-399 240-335 (339)
15 2ogh_A Eukaryotic translation 87.8 1.6 5.4E-05 37.5 7.5 75 11-93 9-96 (108)
16 1qyp_A RNA polymerase II; tran 84.2 0.86 2.9E-05 34.4 3.6 34 97-130 15-53 (57)
17 1pft_A TFIIB, PFTFIIBN; N-term 84.1 0.74 2.5E-05 33.7 3.1 31 97-131 5-35 (50)
18 1tfi_A Transcriptional elongat 82.9 1.2 4.1E-05 33.2 3.8 34 97-130 9-47 (50)
19 2pk7_A Uncharacterized protein 80.0 0.49 1.7E-05 37.7 0.8 35 94-133 5-39 (69)
20 1dl6_A Transcription factor II 75.4 1.2 4.1E-05 34.1 1.8 28 98-129 12-39 (58)
21 2js4_A UPF0434 protein BB2007; 74.1 1.1 3.6E-05 35.8 1.2 33 96-133 7-39 (70)
22 4bbr_M Transcription initiatio 74.0 1.7 5.9E-05 44.1 3.1 43 98-142 22-67 (345)
23 1twf_I B12.6, DNA-directed RNA 72.8 2.2 7.5E-05 37.2 3.1 40 98-137 73-117 (122)
24 3k1f_M Transcription initiatio 71.5 2.3 8E-05 39.9 3.1 43 98-142 22-67 (197)
25 2jr6_A UPF0434 protein NMA0874 69.6 1.3 4.4E-05 35.2 0.8 33 96-133 7-39 (68)
26 2hf1_A Tetraacyldisaccharide-1 68.3 1.5 5.2E-05 34.7 0.9 33 96-133 7-39 (68)
27 2au3_A DNA primase; zinc ribbo 67.1 5 0.00017 41.3 4.8 32 99-132 36-67 (407)
28 4h62_V Mediator of RNA polymer 67.0 3 0.0001 27.5 1.9 21 79-99 7-27 (31)
29 2vut_I AREA, nitrogen regulato 66.9 1.6 5.5E-05 31.7 0.7 29 99-129 3-31 (43)
30 2if1_A EIF1, SUI1; translation 64.3 6.1 0.00021 34.9 4.1 68 19-92 41-113 (126)
31 1wii_A Hypothetical UPF0222 pr 62.6 5.6 0.00019 32.8 3.3 38 95-132 21-59 (85)
32 1gh9_A 8.3 kDa protein (gene M 61.6 2.7 9.3E-05 33.6 1.2 34 98-138 5-38 (71)
33 3po3_S Transcription elongatio 61.3 2.6 8.8E-05 39.2 1.2 34 97-130 137-175 (178)
34 3h0g_I DNA-directed RNA polyme 59.2 5 0.00017 34.4 2.6 33 98-130 73-110 (113)
35 3h0g_I DNA-directed RNA polyme 59.1 3.8 0.00013 35.1 1.8 36 98-134 5-40 (113)
36 1qxf_A GR2, 30S ribosomal prot 58.7 3.3 0.00011 32.8 1.2 30 97-130 7-36 (66)
37 1d0q_A DNA primase; zinc-bindi 58.4 9.1 0.00031 32.0 4.0 33 98-132 38-70 (103)
38 1pqv_S STP-alpha, transcriptio 58.2 5.9 0.0002 39.6 3.3 34 97-130 268-306 (309)
39 2xzm_F EIF1; ribosome, transla 58.1 19 0.00065 30.4 5.9 69 19-92 16-88 (101)
40 2jny_A Uncharacterized BCR; st 56.9 1.7 5.9E-05 34.3 -0.7 36 93-133 6-41 (67)
41 1gnf_A Transcription factor GA 56.3 1.9 6.5E-05 31.7 -0.5 30 98-129 5-34 (46)
42 2lo3_A SAGA-associated factor 54.8 3.6 0.00012 29.9 0.7 28 105-132 1-29 (44)
43 2kae_A GATA-type transcription 53.1 2.6 9E-05 33.7 -0.2 33 97-130 8-40 (71)
44 3c5t_B Exendin-4, exenatide; l 52.5 6.1 0.00021 26.9 1.6 13 414-426 9-21 (31)
45 1x0t_A Ribonuclease P protein 52.2 8.4 0.00029 33.4 2.9 35 99-133 67-107 (120)
46 1vk6_A NADH pyrophosphatase; 1 52.0 8.3 0.00029 37.6 3.2 40 87-131 97-136 (269)
47 3dfx_A Trans-acting T-cell-spe 52.0 2.4 8.3E-05 33.2 -0.6 31 98-130 8-38 (63)
48 3j20_W 30S ribosomal protein S 51.2 5.1 0.00017 31.4 1.2 29 97-129 15-43 (63)
49 3k7a_M Transcription initiatio 51.0 4 0.00014 41.2 0.7 31 98-130 22-52 (345)
50 2k3r_A Ribonuclease P protein 49.2 8.9 0.00031 33.5 2.6 35 99-133 62-102 (123)
51 3a43_A HYPD, hydrogenase nicke 49.0 11 0.00036 33.5 3.1 16 97-112 107-122 (139)
52 2xzm_6 RPS27E; ribosome, trans 47.7 6 0.00021 32.5 1.1 29 97-129 32-60 (81)
53 3j20_Y 30S ribosomal protein S 47.6 8.8 0.0003 28.5 2.0 29 97-130 19-47 (50)
54 4gat_A Nitrogen regulatory pro 47.1 5.3 0.00018 31.5 0.7 32 98-131 10-41 (66)
55 3qml_C Protein SLS1, nucleotid 46.2 73 0.0025 32.1 8.9 74 348-428 173-268 (315)
56 1nui_A DNA primase/helicase; z 45.9 11 0.00039 35.8 3.0 30 97-130 14-43 (255)
57 3cc2_Z 50S ribosomal protein L 45.6 8.7 0.0003 33.5 1.9 79 38-129 9-87 (116)
58 3u5c_b RP61, YS20, 40S ribosom 42.7 8.7 0.0003 31.6 1.3 29 97-129 34-62 (82)
59 3iz6_X 40S ribosomal protein S 41.4 8.1 0.00028 32.0 1.0 28 98-129 37-64 (86)
60 2fiy_A Protein FDHE homolog; F 41.3 16 0.00056 36.6 3.4 36 97-132 182-220 (309)
61 2kpi_A Uncharacterized protein 40.2 13 0.00046 28.1 2.0 33 94-133 7-41 (56)
62 2qkd_A Zinc finger protein ZPR 39.9 19 0.00066 37.5 3.8 33 98-131 221-260 (404)
63 1x3z_A Peptide: N-glycanase; h 37.5 21 0.00071 36.4 3.5 51 82-132 98-167 (335)
64 1vq8_Z 50S ribosomal protein L 36.6 12 0.00041 30.7 1.3 28 98-130 28-55 (83)
65 3qt1_I DNA-directed RNA polyme 33.9 8.6 0.0003 34.1 0.0 33 98-130 93-130 (133)
66 1twf_I B12.6, DNA-directed RNA 32.4 32 0.0011 29.7 3.4 36 97-133 4-39 (122)
67 1twf_L ABC10-alpha, DNA-direct 32.3 7.3 0.00025 31.0 -0.7 34 98-137 29-62 (70)
68 3cng_A Nudix hydrolase; struct 32.2 9.9 0.00034 34.1 0.1 36 97-134 3-39 (189)
69 2g49_C Glucagon preproprotein; 31.9 20 0.00068 23.9 1.5 12 414-425 17-28 (29)
70 3o9x_A Uncharacterized HTH-typ 31.4 25 0.00086 29.6 2.6 33 99-131 4-47 (133)
71 2l63_A GLP-2, glucagon-like pe 30.0 24 0.00082 24.2 1.7 13 414-426 17-29 (33)
72 2kdx_A HYPA, hydrogenase/ureas 28.7 38 0.0013 28.8 3.2 16 97-112 89-105 (119)
73 1jrj_A Exendin-4; Trp-CAGE, GL 28.3 24 0.00083 25.1 1.5 13 414-426 17-29 (39)
74 3j21_g 50S ribosomal protein L 28.3 12 0.0004 28.1 -0.1 27 94-129 11-37 (51)
75 3iz5_m 60S ribosomal protein L 28.1 29 0.00098 29.1 2.2 45 79-129 19-63 (92)
76 2zjr_Z 50S ribosomal protein L 28.0 15 0.00051 28.3 0.4 25 95-129 28-52 (60)
77 1t5q_A Gastric inhibitory poly 27.7 29 0.00098 23.3 1.7 12 414-425 17-28 (30)
78 2j9u_B VPS36, vacuolar protein 26.8 21 0.00074 28.9 1.2 20 118-137 38-57 (76)
79 1h2v_C 80 kDa nuclear CAP bind 26.5 1.4E+02 0.0048 33.5 8.1 61 332-397 545-605 (771)
80 3mhs_E SAGA-associated factor 25.9 14 0.00047 31.2 -0.1 27 105-131 59-86 (96)
81 3iol_B Glucagon; receptor-liga 25.8 32 0.0011 23.1 1.7 12 414-425 17-28 (31)
82 2b4n_A Gastric inhibitory poly 25.5 29 0.001 25.1 1.6 15 414-428 17-31 (42)
83 2apo_B Ribosome biogenesis pro 25.1 29 0.00099 26.9 1.6 26 97-133 6-31 (60)
84 4esj_A Type-2 restriction enzy 24.9 43 0.0015 32.7 3.1 54 79-134 15-70 (257)
85 2qkd_A Zinc finger protein ZPR 24.1 25 0.00086 36.6 1.4 33 98-131 13-52 (404)
86 3ga8_A HTH-type transcriptiona 24.0 43 0.0015 26.3 2.5 35 99-133 4-49 (78)
87 2jrp_A Putative cytoplasmic pr 22.9 50 0.0017 27.0 2.7 9 98-106 3-11 (81)
88 2inp_L Phenol hydroxylase comp 22.8 1.1E+02 0.0037 25.3 4.8 51 22-77 36-86 (89)
89 3h0g_L DNA-directed RNA polyme 22.4 31 0.0011 26.9 1.3 34 97-136 21-54 (63)
90 1wlx_A Alpha-actinin 4; three- 21.9 35 0.0012 30.1 1.7 23 408-430 13-35 (129)
91 3qt1_I DNA-directed RNA polyme 21.7 35 0.0012 30.1 1.7 37 97-134 24-60 (133)
92 3ge3_E Toluene-4-monooxygenase 21.0 1.2E+02 0.004 25.8 4.7 52 22-78 47-98 (103)
93 4hc9_A Trans-acting T-cell-spe 20.6 18 0.00061 31.3 -0.5 31 98-130 60-90 (115)
94 1d4u_A Nucleotide excision rep 20.4 17 0.00057 31.4 -0.7 50 96-147 4-57 (111)
95 4hc9_A Trans-acting T-cell-spe 20.3 18 0.00062 31.2 -0.5 30 98-129 6-35 (115)
96 3lcz_A YCZA, inhibitor of trap 20.1 36 0.0012 25.4 1.2 38 97-143 9-48 (53)
No 1
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=100.00 E-value=1.3e-64 Score=470.62 Aligned_cols=150 Identities=76% Similarity=1.256 Sum_probs=145.4
Q ss_pred ceeccCCCCCCccccccCCCcEEEEeccCCCeeEEEechHHHHHHhCCCCChhhhHHHHhhcCceeeecCCCeEEEEecc
Q psy15553 2 ATVNVNRNVTDAFYRYKMPKLIAKVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGCELGAQTKLDHKNDRFIVNGSH 81 (489)
Q Consensus 2 ~~iNi~~~~~D~~yRykmP~~~~kieGkgngiKTvi~N~~dIakaL~R~p~~~~kyf~~ELGa~~~~d~~~~r~iinG~~ 81 (489)
|+|||+|+++||||||+||+|++++||+||||||+|+||.+||++|+|||+||+|||++||||+|+||++++||||||+|
T Consensus 1 ~~~Ni~~~~~D~~~RykmP~~~v~~EG~gnG~KTvi~Nf~dIak~L~R~p~hv~kyf~~ELGt~g~id~~~~rliinG~~ 80 (170)
T 2g2k_A 1 LSVNVNRSVMDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSH 80 (170)
T ss_dssp CCSCCCSSCCSCCSSCCCCCCCCEEESCTTTCEEECSSHHHHHHHHSSCCTTTHHHHHHHTTCCCEECTTTCCEEEEBCC
T ss_pred CcccccCCCCCccccccCCCCeEEEeccCCccEEEEEcHHHHHHHhCCCHHHHHHHHHHHhCCceeecCCCCEEEEEeee
Confidence 25999999999999999999999999999999999999999999999999999999999999999999779999999999
Q ss_pred chHHHHHHHHHHHhhcccCCCCCCCCceEEEeccCCeEeeecccccCcccccchhhhhhhhhcCCCCCCC
Q psy15553 82 DVVKLQDLLDGFIRKFVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQFNHKLNTFILKNPPNLNP 151 (489)
Q Consensus 82 ~~~~lq~~L~~fI~~yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~~v~~~~kl~~~i~kn~p~~~~ 151 (489)
++.+||++|++||++||+|++|+||||.|++++++++++++|.|||++++|+++|||+|||+||||+..+
T Consensus 81 ~~~~i~~~L~~yI~~YVlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~V~~~~kl~t~i~knpp~~~~ 150 (170)
T 2g2k_A 81 EANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTFILKNPPENSD 150 (170)
T ss_dssp CHHHHHHHHHHHHHHHHSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCCSCSSSSHHHHHHTSCCCCCS
T ss_pred CHHHHHHHHHHHHHHeEECCCCCCCccEEEEecCCCEEEEEccccCCccccccccceeeeeeecCCCCCc
Confidence 9999999999999999999999999999999767999999999999999999999999999999997654
No 2
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=5.2e-63 Score=455.04 Aligned_cols=147 Identities=78% Similarity=1.288 Sum_probs=143.8
Q ss_pred eeccCCCCCCccccccCCCcEEEEeccCCCeeEEEechHHHHHHhCCCCChhhhHHHHhhcCceeeecCCCeEEEEeccc
Q psy15553 3 TVNVNRNVTDAFYRYKMPKLIAKVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGCELGAQTKLDHKNDRFIVNGSHD 82 (489)
Q Consensus 3 ~iNi~~~~~D~~yRykmP~~~~kieGkgngiKTvi~N~~dIakaL~R~p~~~~kyf~~ELGa~~~~d~~~~r~iinG~~~ 82 (489)
++||+|+++|+||||+||+|++++||+||||||+|+||.|||++|+|+|+||+|||++||||+|+||++++||||||+|+
T Consensus 9 ~~nI~r~~~d~~~RykmP~~~v~~eG~gnG~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELGt~g~id~~~~rlii~G~~~ 88 (157)
T 2e9h_A 9 SVNVNRSVSDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHE 88 (157)
T ss_dssp EEESSTTCCCSCCCCEEECCCEEECSSSSSCEEEETTHHHHHHHTTSCTHHHHHHHHHHHTCCEEEETTTTEEEEEBCCC
T ss_pred EEeccCCCCCcccceecCCCeEEEeccCCccEEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecCCCCEEEEEeeeC
Confidence 49999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred hHHHHHHHHHHHhhcccCCCCCCCCceEEEeccCCeEeeecccccCcccccchhhhhhhhhcCCCCC
Q psy15553 83 VVKLQDLLDGFIRKFVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQFNHKLNTFILKNPPNL 149 (489)
Q Consensus 83 ~~~lq~~L~~fI~~yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~~v~~~~kl~~~i~kn~p~~ 149 (489)
+.+||++|++||++||+|++|+||||.|+++.++++++++|.|||++++|+++|||++||+||||+.
T Consensus 89 ~~~i~~~L~~yI~~YVlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~~V~~~~Kl~~~i~knpp~~ 155 (157)
T 2e9h_A 89 ANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTFILKNPPEN 155 (157)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTCCSCCEEEEETTTTEEEEECSSSCCEEECCCCSSHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHeEECCCCCCCccEEEEecCCCEEEEEccCCCCCCcccchhhhhhhhhcCCCCC
Confidence 9999999999999999999999999999987679999999999999999999999999999999964
No 3
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=100.00 E-value=5.6e-45 Score=332.74 Aligned_cols=116 Identities=27% Similarity=0.563 Sum_probs=112.5
Q ss_pred CccccccCCCcEEEEeccCCCeeEEEechHHHHHHhCCCCChhhhHHHHhhcCceeeecCCCeEEEEeccchHHHHHHHH
Q psy15553 12 DAFYRYKMPKLIAKVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGCELGAQTKLDHKNDRFIVNGSHDVVKLQDLLD 91 (489)
Q Consensus 12 D~~yRykmP~~~~kieGkgngiKTvi~N~~dIakaL~R~p~~~~kyf~~ELGa~~~~d~~~~r~iinG~~~~~~lq~~L~ 91 (489)
...|||+||+|++++||+ ||+|+||.|||++|+|||+||+|||++||||+|++| ++||||||+|++++||++|+
T Consensus 25 ~~~~RykmP~~~v~~eGk----KTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id--~~rlii~G~~~~~~i~~~L~ 98 (148)
T 2d74_B 25 HHKSRFEVPGALVTIEGN----KTIIENFKDIADALNRDPQHLLKFLLREIATAGTLE--GRRVVLQGRFTPYLIANKLK 98 (148)
T ss_dssp SSSCCCCCCCCCEEEETT----EEEESCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEE--TTEEEESSCCCHHHHHHHHH
T ss_pred CCCCceecCCCeEEEecC----eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec--CCEEEEEeeeCHHHHHHHHH
Confidence 567999999999999998 999999999999999999999999999999999999 89999999999999999999
Q ss_pred HHHhhcccCCCCCCCCceEEEeccCCeEeeecccccCcccccch
Q psy15553 92 GFIRKFVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQFN 135 (489)
Q Consensus 92 ~fI~~yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~~v~~~ 135 (489)
+||++||+|++|+||||.|++ ++++++++|.|||++++|+++
T Consensus 99 ~yI~~yVlC~~C~sPdT~L~k--~~r~~~l~C~ACGa~~~V~~~ 140 (148)
T 2d74_B 99 KYIKEYVICPVCGSPDTKIIK--RDRFHFLKCEACGAETPIQHL 140 (148)
T ss_dssp HHHHHHSSCSSSCCTTCCCCB--SSSSBCCCCSSSCCCCCCCC-
T ss_pred HHHHHEEECCCCCCcCcEEEE--eCCEEEEEecCCCCCccccch
Confidence 999999999999999999999 899999999999999999975
No 4
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=100.00 E-value=2.9e-45 Score=331.52 Aligned_cols=118 Identities=28% Similarity=0.548 Sum_probs=113.1
Q ss_pred CCCCccccccCCCcEEEEeccCCCeeEEEechHHHHHHhCCCCChhhhHHHHhhcCceeeecCCCeEEEEeccchHHHHH
Q psy15553 9 NVTDAFYRYKMPKLIAKVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGCELGAQTKLDHKNDRFIVNGSHDVVKLQD 88 (489)
Q Consensus 9 ~~~D~~yRykmP~~~~kieGkgngiKTvi~N~~dIakaL~R~p~~~~kyf~~ELGa~~~~d~~~~r~iinG~~~~~~lq~ 88 (489)
......|||+||+|++++||+ ||+|+||.+||++|||||+||+|||++||||+|++| ++||||||+|++++||+
T Consensus 20 ~~~~~~~R~~mp~~~v~~eG~----kTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id--~~rlii~G~~~~~~i~~ 93 (138)
T 1nee_A 20 PEVFETKRFEVPKAYSVIQGN----RTFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE--GGRAILQGKFTHFLINE 93 (138)
T ss_dssp TTSCCCCCCCCSCCCCCEETT----EEEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB--TTTEEEESSCSSSHHHH
T ss_pred cccCCccceecCCCeEEEECC----cEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec--CCEEEEEeeeCHHHHHH
Confidence 334567999999999999999 899999999999999999999999999999999998 89999999999999999
Q ss_pred HHHHHHhhcccCCCCCCCCceEEEeccCCeEeeecccccCcccccc
Q psy15553 89 LLDGFIRKFVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQF 134 (489)
Q Consensus 89 ~L~~fI~~yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~~v~~ 134 (489)
+|++||++||+|++|+||||.|++ ++++++++|+|||++++|++
T Consensus 94 ~L~~yI~~yVlC~~C~sPdT~l~k--~~r~~~l~C~ACGa~~~V~~ 137 (138)
T 1nee_A 94 RIEDYVNKFVICHECNRPDTRIIR--EGRISLLKCEACGAKAPLKN 137 (138)
T ss_dssp HHHHHHTHHHHHTCCSSCSSCCEE--ETTTTEEECSTTSCCCCSCC
T ss_pred HHHHHHhhEEECCCCCCcCcEEEE--cCCeEEEEccCCCCCcccCC
Confidence 999999999999999999999999 89999999999999999964
No 5
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=100.00 E-value=3.3e-42 Score=331.05 Aligned_cols=194 Identities=52% Similarity=0.857 Sum_probs=155.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCC--hHHHHHHHHhcCcCcchhHHHHHhhcCCCCcchHHHhhhhcccccCcccccccc
Q psy15553 236 KTEKERMDIFYTCVKTALEKNNVD--AKELLSEAERLEVKTKAPLILAELLFADEDKIPIQAKKHRILFFGSNQFTWRSV 313 (489)
Q Consensus 236 ~~~~~~~~~~~~~v~~~~~~~~~~--~~ei~~ea~~l~v~~k~~~vl~e~lF~~~~~i~~qi~k~~~ll~~~~~~~~~s~ 313 (489)
++.++++++|++|+++.++.|.++ +++|+.+|+++++++++++||+++||+++ +.++|++|++||
T Consensus 3 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~ea~~l~~k~~~~~vl~e~lf~~~--i~~~l~k~~~lL----------- 69 (208)
T 2iu1_A 3 RTIEERVNILFDFVKKKKEEGVIDSSDKEIVAEAERLDVKAMGPLVLTEVLFNEK--IREQIKKYRRHF----------- 69 (208)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCGGGCHHHHHHHHHHTTCGGGHHHHHHHHHCSTT--HHHHHHHTHHHH-----------
T ss_pred cchhhHHHHHHHHHHHhcccccccccHHHHHHHHHhcchHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-----------
Confidence 344678999999999977777664 46999999999999999999999999988 999999999998
Q ss_pred hhhHHHHHHHHHHHhHHHHHHhhhhhhhhcccccchHHHHHHHHHHHHHHHhhhhHHHhhHHHHHHHHhhccCcchHHHH
Q psy15553 314 GFYRRQINTIATLINQCQLILLDKQSTVLRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLL 393 (489)
Q Consensus 314 ~~~rali~~i~~~~aq~~~~l~~~~~~L~~fv~~~~~~Q~~lL~alE~~~~~~~~~l~~~~~~ILk~LYD~DILeEE~Il 393 (489)
.+|+.++.++|++||++||+||+.++|.+++.|+.||+.|||.|||+|++|+
T Consensus 70 ----------------------------~~~~~~~~~~Q~~lL~alE~~~~~~~~~~~~~~~~IL~~LYD~DIleEEaIl 121 (208)
T 2iu1_A 70 ----------------------------LRFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVII 121 (208)
T ss_dssp ----------------------------HHHHTTCHHHHHHHHHHHHHHHHHTHHHHGGGHHHHHHHHHHTTSSCHHHHH
T ss_pred ----------------------------HHHHcCChHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccchhhhHHHH
Confidence 8999855799999999999999888889999999999999999999999999
Q ss_pred HHHhhccccccchHHHHHHHHHHHHHHHHHccccccCCCCC--CCcccchhhhhhccccccccccccccccccCCCCCCC
Q psy15553 394 EWAEKTSKKYVSKELSAEIRSRAEPFIKWLREAEEEDSDSE--ESDDDLEIEYNDRARVTLQTETIKPKVIKKDEDEDGT 471 (489)
Q Consensus 394 ~W~ek~skk~v~ke~~kkvrk~a~pFIeWLkEAEEEsdede--Edd~~~e~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (489)
+||++++++|++++.++++|++++|||+||++||||||++| |+|+|+||+|+++|++++ ++++
T Consensus 122 ~W~~~~s~~~~~~e~~k~v~~~~~pFI~WL~EAEEEs~eeeeeeed~~~e~~~~~~~~~~~-~~~~-------------- 186 (208)
T 2iu1_A 122 SWSEKASKKYVSKELAKEIRVKAEPFIKWLKEAEEESSGGEEEDEDENIEVVYSKLESVPK-VETV-------------- 186 (208)
T ss_dssp HHHHSCCCSSSCHHHHHHHHHHHHHHHHHHHCSSCCCCCCCCCCCSCHHHHHHHHHC-----------------------
T ss_pred HHHhcCCcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccceeccCccCCCc-cccc--------------
Confidence 99999999999888777899999999999999999887543 346689999999998887 4443
Q ss_pred CCCCCCcCCCCCCCccCC
Q psy15553 472 NDKDEDEDGTNDVDIDAI 489 (489)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~ 489 (489)
+.+++++|||||||
T Consensus 187 ----~~~~~~~d~di~~~ 200 (208)
T 2iu1_A 187 ----KSDNKDDDIDIDAI 200 (208)
T ss_dssp ------------------
T ss_pred ----ccccccccccHHHH
Confidence 13578899999997
No 6
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=100.00 E-value=4.8e-46 Score=336.96 Aligned_cols=123 Identities=24% Similarity=0.375 Sum_probs=108.4
Q ss_pred ccCCCCCCccccccCCCcEEEEeccCCCeeEEEechHHHHHHhCCCCChhhhHHHHhhcCceeeecCCCeEEEEeccchH
Q psy15553 5 NVNRNVTDAFYRYKMPKLIAKVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGCELGAQTKLDHKNDRFIVNGSHDVV 84 (489)
Q Consensus 5 Ni~~~~~D~~yRykmP~~~~kieGkgngiKTvi~N~~dIakaL~R~p~~~~kyf~~ELGa~~~~d~~~~r~iinG~~~~~ 84 (489)
++-+...+.+|||+||+|++++||+ ||+|+||.|||++|||||+||+|||++||||+|++|+ ++||||||+|+++
T Consensus 16 ~~l~~~~~~~~R~kmp~~~v~~eG~----kTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id~-~~rlii~G~~~~~ 90 (139)
T 3cw2_K 16 SKLPEKGRKEGTQSLPNMIILNIGN----TTIIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDD-KGELVIQGKFSSQ 90 (139)
T ss_dssp TSSTTSSSCSSCCSCCCCCCCCCSS----SCCCSCSSSTTTTTSSCCTTTHHHHSCCSSCCCCCSS-SCCCTTTCSCCSC
T ss_pred HHcccccCCccceecCCCeEEEECC----eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceEECC-CCeEEEEeeeCHH
Confidence 3434455889999999999999999 8999999999999999999999999999999999995 9999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCceEEEeccCCeEeeecccccCcccccc
Q psy15553 85 KLQDLLDGFIRKFVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQF 134 (489)
Q Consensus 85 ~lq~~L~~fI~~yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~~v~~ 134 (489)
+||++|++||++||+|++|+||||.|++ ++++++++|.|||++++|++
T Consensus 91 ~i~~~L~~yI~~yVlC~~C~sPdT~l~k--~~r~~~l~C~ACGa~~~V~~ 138 (139)
T 3cw2_K 91 VINTLMERFLKAYVECSTCKSLDTILKK--EKKSWYIVCLACGAQTPVKP 138 (139)
T ss_dssp CSCSTTTTTSSCCSSCCSSSSSCCCSCS--SCSTTTSSCCC---------
T ss_pred HHHHHHHHHHHHeeECCCCCCcCcEEEE--eCCeEEEEecCCCCCCccCC
Confidence 9999999999999999999999999999 89999999999999999964
No 7
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-34 Score=270.67 Aligned_cols=156 Identities=29% Similarity=0.543 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHH-HhhCCCCh---HHHHHHHHhcCc--CcchhHHHHHhhcCCCCcchHHHhhhhcccccCccccccc
Q psy15553 239 KERMDIFYTCVKTA-LEKNNVDA---KELLSEAERLEV--KTKAPLILAELLFADEDKIPIQAKKHRILFFGSNQFTWRS 312 (489)
Q Consensus 239 ~~~~~~~~~~v~~~-~~~~~~~~---~ei~~ea~~l~v--~~k~~~vl~e~lF~~~~~i~~qi~k~~~ll~~~~~~~~~s 312 (489)
.+++++|++|+++. .+.| ++. .+|+.+|++|++ ++++++||+++||+++ +.++|++|++||
T Consensus 10 ~~~~d~~~~~i~~~~~~~~-~~~~~~~~i~~~a~~l~~~~~~~~~~vl~~~lf~~~--i~~~l~k~~~lL---------- 76 (177)
T 2ful_A 10 LTQLDEYGEWILEQAGEDK-ENLPSDVELYKKAAELDVLNDPKIGCVLAQCLFDED--IVNEIAEHNAFF---------- 76 (177)
T ss_dssp HHHHHHHHHHHHHHHCTTS-TTCCCHHHHHHHHHHTTCTTCTTHHHHHHHHSCSTT--HHHHTTSCHHHH----------
T ss_pred chHHHHHHHHHHHhccccc-ccccchHHHHHHHHhcCcchhhHHHHHHHHHHhchh--HHHHHHHHHHHH----------
Confidence 46799999999985 3445 432 499999999999 8999999999999988 999999999998
Q ss_pred chhhHHHHHHHHHHHhHHHHHHhhhhhhhhcccccchHHHHHHHHHHHHHHHhhhhHHHhhHHHHHHHHhhccCcchHHH
Q psy15553 313 VGFYRRQINTIATLINQCQLILLDKQSTVLRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVL 392 (489)
Q Consensus 313 ~~~~rali~~i~~~~aq~~~~l~~~~~~L~~fv~~~~~~Q~~lL~alE~~~~~~~~~l~~~~~~ILk~LYD~DILeEE~I 392 (489)
.+|++ +.++|++||++||++|+.+++.+++.|++||+.|||.|||+||+|
T Consensus 77 -----------------------------~~~~~-~~~~q~~lL~ale~~~~~~~~~~~~~~~~IL~~LYd~DIleEeaI 126 (177)
T 2ful_A 77 -----------------------------TKILV-TPEYEKNFMGGIERFLGLEHKDLIPLLPKILVQLYNNDIISEEEI 126 (177)
T ss_dssp -----------------------------HHHCC-SHHHHHHHHHHHHHHHHTTCGGGGGGHHHHHHHHHHTTSSCHHHH
T ss_pred -----------------------------HHHcC-CcHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccchhhhHHH
Confidence 89997 479999999999999977889999999999999999999999999
Q ss_pred HHHHhhccccccchHHHHHHHHHHHHHHHHHccccccCCCCCCCc
Q psy15553 393 LEWAEKTSKKYVSKELSAEIRSRAEPFIKWLREAEEEDSDSEESD 437 (489)
Q Consensus 393 l~W~ek~skk~v~ke~~kkvrk~a~pFIeWLkEAEEEsdedeEdd 437 (489)
++||++++++|++++.++++|++++|||+||++||||||++||||
T Consensus 127 l~W~~~~skk~v~~e~~~~v~~~~~pFI~WL~eAEEEseeeeee~ 171 (177)
T 2ful_A 127 MRFGTKSSKKFVPKEVSKKVRRAAKPFITWLETAESDDDEEDDEL 171 (177)
T ss_dssp HHHHHCCCSSSSCHHHHHHHHHTTHHHHHHHHHCC---------C
T ss_pred HHHHhcCCcccCChHHHHHHHHHHHHHHHHHHccccccccccccc
Confidence 999999998899888888999999999999999999888765544
No 8
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=99.89 E-value=5.9e-23 Score=194.27 Aligned_cols=96 Identities=25% Similarity=0.336 Sum_probs=78.5
Q ss_pred HHhhhhhhhhcccccchHHHHHHHHHHHHHHH-hhhhHHHhhHHHHHHHHhhccCcchHHHHHHHhhccccccchHHHHH
Q psy15553 333 ILLDKQSTVLRFTHEDIKAQRYLLNGIEQVIA-LHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAE 411 (489)
Q Consensus 333 ~l~~~~~~L~~fv~~~~~~Q~~lL~alE~~~~-~~~~~l~~~~~~ILk~LYD~DILeEE~Il~W~ek~skk~v~ke~~kk 411 (489)
.|..+.++|.+|+. +.++|+++|+|||.||. .++|.+++.|++||+.|||.|||+||+|++||++++ +++ + .++
T Consensus 91 ~l~~~~~ll~~~~~-~~~~q~~lL~ale~~~~~~~~~~~~~~~~~il~~LYd~DileEe~il~W~~~~~--~~~-~-~~~ 165 (189)
T 1paq_A 91 VFNQWGLLFKRQAF-DEEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVS--TDP-R-YDE 165 (189)
T ss_dssp HHHHHGGGGGGTCC-SHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHTCC--CCG-G-GHH
T ss_pred HHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHhccccccccHHHHHHHhCCC--chH-H-HHH
Confidence 34555667899997 58999999999999996 478999999999999999999999999999999876 344 4 348
Q ss_pred HHHHHHHHHHHHccccccCCCC
Q psy15553 412 IRSRAEPFIKWLREAEEEDSDS 433 (489)
Q Consensus 412 vrk~a~pFIeWLkEAEEEsded 433 (489)
+|++++|||+||++||||||+|
T Consensus 166 v~~~~~~Fi~WL~eAEeEs~~e 187 (189)
T 1paq_A 166 VKKLTVKWVEWLQNADEESSSE 187 (189)
T ss_dssp HHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHhccCcccccc
Confidence 9999999999999999887654
No 9
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0
Probab=99.88 E-value=3.3e-23 Score=195.09 Aligned_cols=95 Identities=25% Similarity=0.410 Sum_probs=77.6
Q ss_pred hhhhhhhhcccccchHHHHHHHHHHHHHHHhhhhHHHhhHHHHHHHHhhccCcchHHHHHHHhhccccccchHHHHHHHH
Q psy15553 335 LDKQSTVLRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRS 414 (489)
Q Consensus 335 ~~~~~~L~~fv~~~~~~Q~~lL~alE~~~~~~~~~l~~~~~~ILk~LYD~DILeEE~Il~W~ek~skk~v~ke~~kkvrk 414 (489)
..+.++|.+|+++ .++|+++|++||++| .+++.+++.|+.||+.|||.|||+||+|++||+++++.+ ++.++.+|+
T Consensus 87 ~~~~~ll~~~~~~-~~~q~~lL~ale~~~-~~~~~~~~~~~~il~~LYd~DileEe~Il~W~~~~~~~~--~~~~~~vr~ 162 (182)
T 3jui_A 87 KAWSPVFRNYIKR-AADHLEALAAIEDFF-LEHEALGISMAKVLMAFYQLEILAGETILSWFSQRDTTD--KGQQLRKNQ 162 (182)
T ss_dssp HHHHHHHHHHCCS-HHHHHHHHHHHHHHH-HHCGGGGGGHHHHHHHHHHTTSSCHHHHHHHHTCCC--C--HHHHHTTCH
T ss_pred HHHHHHHHHHhCC-HHHHHHHHHHHHHHH-HhCchHHHHHHHHHHHHhhcchhchHHHHHHHHcCCccc--cchHHHHHH
Confidence 3444556899984 799999999999999 667888999999999999999999999999999988653 454567999
Q ss_pred HHHHHHHHHccccccCCCC
Q psy15553 415 RAEPFIKWLREAEEEDSDS 433 (489)
Q Consensus 415 ~a~pFIeWLkEAEEEsded 433 (489)
+++|||+||++||||||+|
T Consensus 163 ~~~~Fi~WL~eAEEEs~ee 181 (182)
T 3jui_A 163 QLQRFIQWLKEAEEESSED 181 (182)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHhccCcccCCC
Confidence 9999999999999887753
No 10
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}
Probab=99.81 E-value=4.9e-20 Score=171.08 Aligned_cols=90 Identities=21% Similarity=0.400 Sum_probs=78.2
Q ss_pred HHhhhhhhhhcccccchHHHHHHHHHHHHHHHhhhhHHHhhHHHHHHHHhhccCcchHHHHHHHhhccccccchHHHHHH
Q psy15553 333 ILLDKQSTVLRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEI 412 (489)
Q Consensus 333 ~l~~~~~~L~~fv~~~~~~Q~~lL~alE~~~~~~~~~l~~~~~~ILk~LYD~DILeEE~Il~W~ek~skk~v~ke~~kkv 412 (489)
.+..+.++|.+|++++.++|+++|+|||.||. +++.+++.|+.||+.|||.|||+||+|++||++++++ .+.++++
T Consensus 79 ~l~~~~~ll~~~~~~~~~~q~~lL~alq~~~~-~~~~~~~~~~~il~~LYd~DvleEe~il~W~~~~~~~---~~~~~~~ 154 (168)
T 3d3m_A 79 LLLSFKPVMQKFLHDHVDLQVSALYALQVHCY-NSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQE---FPGKGKA 154 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCTTHHHHHHHHHHHTTSSCHHHHHHHHHCCSCC---CTTHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHhhcchhhHHHHHHHHhCCcch---hhHHHHH
Confidence 35556677899998558999999999999995 4777889999999999999999999999999987754 2346789
Q ss_pred HHHHHHHHHHHccc
Q psy15553 413 RSRAEPFIKWLREA 426 (489)
Q Consensus 413 rk~a~pFIeWLkEA 426 (489)
+++++|||+||+||
T Consensus 155 ~~~~~~Fi~WL~eA 168 (168)
T 3d3m_A 155 LFQVNQWLTWLETA 168 (168)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999987
No 11
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=99.79 E-value=3.8e-20 Score=141.33 Aligned_cols=52 Identities=31% Similarity=0.510 Sum_probs=49.4
Q ss_pred EEEEeccCCCeeEEEechHHHHHHhCCCCChhhhHHHHhhcCceeeecCCCeEEEEec
Q psy15553 23 IAKVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGCELGAQTKLDHKNDRFIVNGS 80 (489)
Q Consensus 23 ~~kieGkgngiKTvi~N~~dIakaL~R~p~~~~kyf~~ELGa~~~~d~~~~r~iinG~ 80 (489)
++.++|+ ||+|+||.|||++|+|||+||+|||++||||+|++| ++||||||+
T Consensus 1 ~v~~eG~----kTvi~Nf~~Ia~~L~R~p~hv~ky~~~ELGt~g~id--~~rlii~G~ 52 (52)
T 1k8b_A 1 EILIEGN----RTIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLE--GGRLILQRR 52 (52)
T ss_dssp CEEEETT----EEEECCHHHHHHHHHTCHHHHHHHHHHHHSSEEEEE--TTEEEEECC
T ss_pred CcEEEcC----eEEEECHHHHHHHHCCCHHHHHHHHHHHhCCCeeec--CCEEEEeCC
Confidence 4678888 899999999999999999999999999999999999 899999996
No 12
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=172.22 Aligned_cols=112 Identities=21% Similarity=0.397 Sum_probs=89.0
Q ss_pred cccchhhHHHHHHHHHHHh-H---------------------HHHHHhhhhhhhhcccccchHHHHHHHHHHHHHHHh-h
Q psy15553 310 WRSVGFYRRQINTIATLIN-Q---------------------CQLILLDKQSTVLRFTHEDIKAQRYLLNGIEQVIAL-H 366 (489)
Q Consensus 310 ~~s~~~~rali~~i~~~~a-q---------------------~~~~l~~~~~~L~~fv~~~~~~Q~~lL~alE~~~~~-~ 366 (489)
+.+++|.|++++.|+...- . ....+..+.++|.+|+.++.++|+++|+|||.+|.. +
T Consensus 230 ~~~~~fir~L~t~v~~~~~~~~~~~~~~~d~~~~~~k~~~~~~~~~l~~~~~ll~~~~~~~~~~q~~~L~alq~~~~~~~ 309 (364)
T 3l6a_A 230 HVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYNSN 309 (364)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcc
Confidence 4678999999998885321 1 123456666788999987557799999999999964 2
Q ss_pred hhHHHhhHHHHHHHHhhccCcchHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHccc
Q psy15553 367 KEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEPFIKWLREA 426 (489)
Q Consensus 367 ~~~l~~~~~~ILk~LYD~DILeEE~Il~W~ek~skk~v~ke~~kkvrk~a~pFIeWLkEA 426 (489)
+| .+.++.||+.|||.|||+||+|++||++.+++|+++ .+++++++|||+||+||
T Consensus 310 ~~--~~~l~~il~~LYd~DileEe~il~W~~~~~~~~~~k---~~~~~~~~~Fi~WL~eA 364 (364)
T 3l6a_A 310 FP--KGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGK---GKALFQVNQWLTWLETA 364 (364)
T ss_dssp CC--TTHHHHHHHHHHHTTSSCHHHHHHHHHCCCCSSTTH---HHHHHHHHHHHHHHHHC
T ss_pred cc--HHHHHHHHHHHHHhhhhhhHHHHHHHhcCCcccchH---HHHHHHHHHHHHHHhcC
Confidence 33 356899999999999999999999999887666554 46899999999999987
No 13
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=99.31 E-value=4.8e-13 Score=94.76 Aligned_cols=35 Identities=29% Similarity=0.675 Sum_probs=33.3
Q ss_pred ccCCCCCCCCceEEEeccCCeEeeecccccCcccccc
Q psy15553 98 VLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQF 134 (489)
Q Consensus 98 VlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~~v~~ 134 (489)
|+|++|+||||.|++ ++++++++|+|||++++|+.
T Consensus 1 VlC~~C~~peT~l~~--~~~~~~l~C~aCG~~~~v~~ 35 (36)
T 1k81_A 1 VICRECGKPDTKIIK--EGRVHLLKCMACGAIRPIRM 35 (36)
T ss_dssp CCCSSSCSCEEEEEE--ETTEEEEEEETTTEEEEECC
T ss_pred CCCcCCCCCCcEEEE--eCCcEEEEhhcCCCcccccc
Confidence 899999999999999 89999999999999999964
No 14
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=98.92 E-value=1e-09 Score=111.60 Aligned_cols=89 Identities=13% Similarity=0.259 Sum_probs=68.7
Q ss_pred ccccchhhHHHHHHHHHH-Hh-----H-HHHHHhhhhhhhhcccccchHHHHHHHHHHHHHHHhhhhHHHhhHHHHHHHH
Q psy15553 309 TWRSVGFYRRQINTIATL-IN-----Q-CQLILLDKQSTVLRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLF 381 (489)
Q Consensus 309 ~~~s~~~~rali~~i~~~-~a-----q-~~~~l~~~~~~L~~fv~~~~~~Q~~lL~alE~~~~~~~~~l~~~~~~ILk~L 381 (489)
.+.++.|.+++++++... +- + ....+..+.++|.+|++ +.+.|+++|++||.+| .++....+.|..|++.|
T Consensus 240 ~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~pll~~~~~-~~~~ql~~L~alQ~~~-~~~~~~~~~l~~~~~~L 317 (339)
T 1ug3_A 240 QIVSNTLVRALMTAVCYSAIIFETPLRVDVAVLKARAKLLQKYLC-DEQKELQALYALQALV-VTLEQPPNLLRMFFDAL 317 (339)
T ss_dssp HHTCHHHHHHHHHHHHHHTEECSSSCEECHHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHHH-HHTTCCTTHHHHHHHHH
T ss_pred hCChHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHH-HhccChHHHHHHHHHHH
Confidence 456788999999988743 10 1 12335555556888997 4799999999999999 45555568899999999
Q ss_pred hhccCcchHHHHHHHhhc
Q psy15553 382 YDYDILEEKVLLEWAEKT 399 (489)
Q Consensus 382 YD~DILeEE~Il~W~ek~ 399 (489)
||.|||+||+|++||+..
T Consensus 318 Yd~dVi~Eeail~W~~~~ 335 (339)
T 1ug3_A 318 YDEDVVKEDAFYSWESSK 335 (339)
T ss_dssp HHTTSSCHHHHHHHTC--
T ss_pred hCcchhhHHHHHHHHhcC
Confidence 999999999999999763
No 15
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=87.76 E-value=1.6 Score=37.51 Aligned_cols=75 Identities=11% Similarity=0.144 Sum_probs=56.7
Q ss_pred CCcccc------ccCCCcEEEEeccCCCe--eEEEechHHHHHHhCCCCChhhhHHHHhhcCceeeecCCC-----eEEE
Q psy15553 11 TDAFYR------YKMPKLIAKVEGKGNGI--KTVIVNMADVAKAIGRPPTYPTKYFGCELGAQTKLDHKND-----RFIV 77 (489)
Q Consensus 11 ~D~~yR------ykmP~~~~kieGkgngi--KTvi~N~~dIakaL~R~p~~~~kyf~~ELGa~~~~d~~~~-----r~ii 77 (489)
-|||+- =..|.+.++++-+ ||. =|+|.+|.. .-++.-+.|.|...+|+.|++- ++ ...|
T Consensus 9 ~dpf~~~~~~~~~~~~~V~Ir~~~R-~g~K~VT~V~Gl~~-----~~dlk~lak~lKkk~acggsV~--~~~~~g~~I~i 80 (108)
T 2ogh_A 9 FDPFADTGDDETATSNYIHIRIQQR-NGRKTLTTVQGVPE-----EYDLKRILKVLKKDFACNGNIV--KDPEMGEIIQL 80 (108)
T ss_dssp CCCCCCCCCCCCCCSCSEEEEEECC-SSSCCEEEEECCCT-----TSCHHHHHHHHHHHHCCCEEEE--CCTTSSCEEEE
T ss_pred CCccccccccccCCCCeEEEEEEEc-cCCceEEEEeCCCc-----chhHHHHHHHHHHHhcCceEEe--cCCCCceEEEE
Confidence 477753 3456788998876 553 467888862 3478889999999999999985 34 8999
Q ss_pred EeccchHHHHHHHHHH
Q psy15553 78 NGSHDVVKLQDLLDGF 93 (489)
Q Consensus 78 nG~~~~~~lq~~L~~f 93 (489)
+|.|...-.+=|+..+
T Consensus 81 QGD~r~~v~~~L~~~g 96 (108)
T 2ogh_A 81 QGDQRAKVCEFMISQL 96 (108)
T ss_dssp ESSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcC
Confidence 9999888776666654
No 16
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=84.20 E-value=0.86 Score=34.39 Aligned_cols=34 Identities=26% Similarity=0.499 Sum_probs=25.5
Q ss_pred cccCCCCCCCCceEEEec-----cCCeEeeecccccCcc
Q psy15553 97 FVLCPECDNPETDLVVSA-----KKGTIQQVCKACGFHG 130 (489)
Q Consensus 97 yVlC~~C~~PeT~l~~~~-----k~~~~~l~C~ACG~~~ 130 (489)
.|.||.|++.+....-.. +..++|..|..||++-
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w 53 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW 53 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEe
Confidence 588999999777655421 2346899999999873
No 17
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=84.12 E-value=0.74 Score=33.72 Aligned_cols=31 Identities=29% Similarity=0.866 Sum_probs=22.4
Q ss_pred cccCCCCCCCCceEEEeccCCeEeeecccccCccc
Q psy15553 97 FVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGM 131 (489)
Q Consensus 97 yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~~ 131 (489)
.+.||.|+++ .|+.+...+ .+.|..||..-+
T Consensus 5 ~~~CP~C~~~--~l~~d~~~g--elvC~~CG~v~~ 35 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERG--EIVCAKCGYVIE 35 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTT--EEEESSSCCBCC
T ss_pred cEeCcCCCCc--ceEEcCCCC--eEECcccCCccc
Confidence 3579999985 466654444 589999999543
No 18
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=82.95 E-value=1.2 Score=33.21 Aligned_cols=34 Identities=21% Similarity=0.432 Sum_probs=26.4
Q ss_pred cccCCCCCCCCceEEEec-----cCCeEeeecccccCcc
Q psy15553 97 FVLCPECDNPETDLVVSA-----KKGTIQQVCKACGFHG 130 (489)
Q Consensus 97 yVlC~~C~~PeT~l~~~~-----k~~~~~l~C~ACG~~~ 130 (489)
-+.||.|++++..+.... +.-++|..|..||++-
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w 47 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 47 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeE
Confidence 468999999999877532 2346899999999863
No 19
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=79.97 E-value=0.49 Score=37.67 Aligned_cols=35 Identities=23% Similarity=0.551 Sum_probs=25.5
Q ss_pred HhhcccCCCCCCCCceEEEeccCCeEeeecccccCccccc
Q psy15553 94 IRKFVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQ 133 (489)
Q Consensus 94 I~~yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~~v~ 133 (489)
+-..+.||.|+.| |..+ ...-.+.|.+||...+|.
T Consensus 5 LLeiL~CP~ck~~---L~~~--~~~~~LiC~~cg~~YPI~ 39 (69)
T 2pk7_A 5 LLDILACPICKGP---LKLS--ADKTELISKGAGLAYPIR 39 (69)
T ss_dssp GGGTCCCTTTCCC---CEEC--TTSSEEEETTTTEEEEEE
T ss_pred HHhheeCCCCCCc---CeEe--CCCCEEEcCCCCcEecCc
Confidence 4456889999986 4442 223467899999999984
No 20
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=75.37 E-value=1.2 Score=34.08 Aligned_cols=28 Identities=29% Similarity=0.606 Sum_probs=21.0
Q ss_pred ccCCCCCCCCceEEEeccCCeEeeecccccCc
Q psy15553 98 VLCPECDNPETDLVVSAKKGTIQQVCKACGFH 129 (489)
Q Consensus 98 VlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~ 129 (489)
..||.|++.. |+.+ ...-.+.|..||..
T Consensus 12 ~~Cp~C~~~~--lv~D--~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 12 VTCPNHPDAI--LVED--YRAGDMICPECGLV 39 (58)
T ss_dssp CSBTTBSSSC--CEEC--SSSCCEECTTTCCE
T ss_pred ccCcCCCCCc--eeEe--CCCCeEEeCCCCCE
Confidence 4799999866 6664 33346899999976
No 21
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=74.06 E-value=1.1 Score=35.83 Aligned_cols=33 Identities=21% Similarity=0.474 Sum_probs=24.6
Q ss_pred hcccCCCCCCCCceEEEeccCCeEeeecccccCccccc
Q psy15553 96 KFVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQ 133 (489)
Q Consensus 96 ~yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~~v~ 133 (489)
..+.||.|+.| |..+... -.+.|.+||...+|.
T Consensus 7 ~iL~CP~ck~~---L~~~~~~--~~LiC~~cg~~YPI~ 39 (70)
T 2js4_A 7 DILVCPVCKGR---LEFQRAQ--AELVCNADRLAFPVR 39 (70)
T ss_dssp CCCBCTTTCCB---EEEETTT--TEEEETTTTEEEEEE
T ss_pred hheECCCCCCc---CEEeCCC--CEEEcCCCCceecCC
Confidence 45789999995 5553233 367899999999984
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=74.00 E-value=1.7 Score=44.12 Aligned_cols=43 Identities=28% Similarity=0.631 Sum_probs=31.7
Q ss_pred ccCCCCCCCCceEEEeccCCeEeeecccccCc---ccccchhhhhhhh
Q psy15553 98 VLCPECDNPETDLVVSAKKGTIQQVCKACGFH---GMLQFNHKLNTFI 142 (489)
Q Consensus 98 VlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~---~~v~~~~kl~~~i 142 (489)
+.||.|+++.|.|+.|...+ .+.|..||-. +.+|...---+|-
T Consensus 22 ~~Cp~C~~~~~~lv~D~~~G--~~vC~~CGlVl~e~~iD~g~EWR~f~ 67 (345)
T 4bbr_M 22 LTCPECKVYPPKIVERFSEG--DVVCALCGLVLSDKLVDTRSEWRTFS 67 (345)
T ss_dssp CCCSSCCCSSCCEEEEGGGT--EEEETTTCBEEESCCBCHHHHHTTTS
T ss_pred CcCCCCCCCCCceeEECCCC--cEEeCCCCCCccCcccccCccccCCC
Confidence 47999999667788754444 8899999965 6677766655553
No 23
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=72.83 E-value=2.2 Score=37.16 Aligned_cols=40 Identities=23% Similarity=0.373 Sum_probs=29.6
Q ss_pred ccCCCCCCCCceEEEec-----cCCeEeeecccccCcccccchhh
Q psy15553 98 VLCPECDNPETDLVVSA-----KKGTIQQVCKACGFHGMLQFNHK 137 (489)
Q Consensus 98 VlC~~C~~PeT~l~~~~-----k~~~~~l~C~ACG~~~~v~~~~k 137 (489)
+.||.|++.+..+.-.+ +.-++|..|..||++-..+...|
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~nn~~~ 117 (122)
T 1twf_I 73 RECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQKNK 117 (122)
T ss_dssp CCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCTTCC
T ss_pred CCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccCChhh
Confidence 78999999999887521 23568999999999865544333
No 24
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=71.51 E-value=2.3 Score=39.86 Aligned_cols=43 Identities=28% Similarity=0.631 Sum_probs=31.5
Q ss_pred ccCCCCCCCCceEEEeccCCeEeeecccccCc---ccccchhhhhhhh
Q psy15553 98 VLCPECDNPETDLVVSAKKGTIQQVCKACGFH---GMLQFNHKLNTFI 142 (489)
Q Consensus 98 VlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~---~~v~~~~kl~~~i 142 (489)
..||.|++..+.|+.|...+ .+.|..||.. +.+|....--+|-
T Consensus 22 ~~CPECGs~~t~IV~D~erG--E~VCsdCGLVLEEriID~GPEWRAFs 67 (197)
T 3k1f_M 22 LTCPECKVYPPKIVERFSEG--DVVCALCGLVLSDKLVDTRSEWRTFS 67 (197)
T ss_dssp CCCTTTCCSSCCEEEEGGGT--EEEETTTCBBCCCCCBCHHHHHHHHH
T ss_pred eECcCCCCcCCeEEEeCCCC--EEEEcCCCCCcCCceeECCCCCcCcC
Confidence 47999999668888854444 7889999986 5566666665554
No 25
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=69.65 E-value=1.3 Score=35.16 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=24.1
Q ss_pred hcccCCCCCCCCceEEEeccCCeEeeecccccCccccc
Q psy15553 96 KFVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQ 133 (489)
Q Consensus 96 ~yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~~v~ 133 (489)
..+.||.|+.| |..+... -.+.|.+||...+|.
T Consensus 7 ~iL~CP~ck~~---L~~~~~~--~~LiC~~cg~~YPI~ 39 (68)
T 2jr6_A 7 DILVCPVTKGR---LEYHQDK--QELWSRQAKLAYPIK 39 (68)
T ss_dssp CCCBCSSSCCB---CEEETTT--TEEEETTTTEEEEEE
T ss_pred hheECCCCCCc---CeEeCCC--CEEEcCCCCcEecCC
Confidence 45789999985 4443233 357899999999984
No 26
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=68.35 E-value=1.5 Score=34.72 Aligned_cols=33 Identities=27% Similarity=0.659 Sum_probs=24.0
Q ss_pred hcccCCCCCCCCceEEEeccCCeEeeecccccCccccc
Q psy15553 96 KFVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQ 133 (489)
Q Consensus 96 ~yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~~v~ 133 (489)
..+.||.|+.| |..+...+ .+.|.+||...+|.
T Consensus 7 ~iL~CP~ck~~---L~~~~~~~--~LiC~~cg~~YPI~ 39 (68)
T 2hf1_A 7 EILVCPLCKGP---LVFDKSKD--ELICKGDRLAFPIK 39 (68)
T ss_dssp EECBCTTTCCB---CEEETTTT--EEEETTTTEEEEEE
T ss_pred hheECCCCCCc---CeEeCCCC--EEEcCCCCcEecCC
Confidence 45789999985 44432333 57899999999984
No 27
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=67.12 E-value=5 Score=41.31 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=23.8
Q ss_pred cCCCCCCCCceEEEeccCCeEeeecccccCcccc
Q psy15553 99 LCPECDNPETDLVVSAKKGTIQQVCKACGFHGML 132 (489)
Q Consensus 99 lC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~~v 132 (489)
+||-|+--.-++.+++.++ +-+|-+||+.+.+
T Consensus 36 ~CPfh~ektpSf~V~~~k~--~~~CFgCg~gGd~ 67 (407)
T 2au3_A 36 NCPFHPDDTPSFYVSPSKQ--IFKCFGCGVGGDA 67 (407)
T ss_dssp CCSSSCCSSCCEEEETTTT--EEEETTTCCEECH
T ss_pred eCcCCCCCCCeEEEECCCC--EEEECCCCCCCCH
Confidence 8999975444677765555 5689999987655
No 28
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=66.96 E-value=3 Score=27.54 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=17.1
Q ss_pred eccchHHHHHHHHHHHhhccc
Q psy15553 79 GSHDVVKLQDLLDGFIRKFVL 99 (489)
Q Consensus 79 G~~~~~~lq~~L~~fI~~yVl 99 (489)
.+|+.++|+++|++-|+.||-
T Consensus 7 trfdekqieelldncietfva 27 (31)
T 4h62_V 7 TRFDEKQIEELLDNCIETFVA 27 (31)
T ss_dssp ---CHHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHHh
Confidence 478999999999999999985
No 29
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=66.90 E-value=1.6 Score=31.66 Aligned_cols=29 Identities=31% Similarity=0.720 Sum_probs=22.9
Q ss_pred cCCCCCCCCceEEEeccCCeEeeecccccCc
Q psy15553 99 LCPECDNPETDLVVSAKKGTIQQVCKACGFH 129 (489)
Q Consensus 99 lC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~ 129 (489)
.|..|+..+|-+-+....+. .-|+|||-.
T Consensus 3 ~C~~C~tt~Tp~WR~gp~G~--~LCNaCGl~ 31 (43)
T 2vut_I 3 TCTNCFTQTTPLWRRNPEGQ--PLCNACGLF 31 (43)
T ss_dssp CCSSSCCCCCSCCEECTTSC--EECHHHHHH
T ss_pred cCCccCCCCCCccccCCCCC--cccHHHHHH
Confidence 59999999999888433443 789999954
No 30
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1
Probab=64.27 E-value=6.1 Score=34.86 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=49.9
Q ss_pred CCCcEEEEeccCCCee--EEEechHHHHHHhCCCCChhhhHHHHhhcCceeeecC---CCeEEEEeccchHHHHHHHHH
Q psy15553 19 MPKLIAKVEGKGNGIK--TVIVNMADVAKAIGRPPTYPTKYFGCELGAQTKLDHK---NDRFIVNGSHDVVKLQDLLDG 92 (489)
Q Consensus 19 mP~~~~kieGkgngiK--Tvi~N~~dIakaL~R~p~~~~kyf~~ELGa~~~~d~~---~~r~iinG~~~~~~lq~~L~~ 92 (489)
.|.+.++++-+ ||.| |+|.+|.. .-++.-+.|.|...+|+.|++-+. ++.+.|+|-|.....+=|+..
T Consensus 41 ~~~V~Ir~~~R-~grK~VT~V~GL~~-----~~dlk~laK~LKkk~acgGtVk~~~e~g~~I~IQGD~r~~I~~~L~~~ 113 (126)
T 2if1_A 41 EDYIHIRIQQR-NGRKTLTTVQGIAD-----DYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEI 113 (126)
T ss_dssp TTCEECCCCCS-SSSCCBCEEBSCCT-----TSCHHHHHTTHHHHTCCCEEEECCTTTSSEEEESBCCHHHHHHHHHHH
T ss_pred CCeEEEEEEee-cCCccEEEEeCCCC-----chhHHHHHHHHHHHhcCCeEEecCCCCccEEEEcCCHHHHHHHHHHHc
Confidence 35678888754 6644 77888862 346788999999999999998522 137999999987765555544
No 31
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=62.57 E-value=5.6 Score=32.85 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=28.5
Q ss_pred hhcccCCCCCCCCceEE-EeccCCeEeeecccccCcccc
Q psy15553 95 RKFVLCPECDNPETDLV-VSAKKGTIQQVCKACGFHGML 132 (489)
Q Consensus 95 ~~yVlC~~C~~PeT~l~-~~~k~~~~~l~C~ACG~~~~v 132 (489)
.++-.||-|+...+.-+ ++.+.++-.+.|..||.....
T Consensus 21 ~t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 21 ETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp SSCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEE
T ss_pred CCeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEe
Confidence 45668999999976444 333567889999999987654
No 32
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=61.64 E-value=2.7 Score=33.63 Aligned_cols=34 Identities=21% Similarity=0.492 Sum_probs=25.3
Q ss_pred ccCCCCCCCCceEEEeccCCeEeeecccccCcccccchhhh
Q psy15553 98 VLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQFNHKL 138 (489)
Q Consensus 98 VlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~~v~~~~kl 138 (489)
|-|| |++. ++. +.+.-...|. ||++-.+.....|
T Consensus 5 v~C~-C~~~---~~~--~~~~kT~~C~-CG~~~~~~k~rif 38 (71)
T 1gh9_A 5 FRCD-CGRA---LYS--REGAKTRKCV-CGRTVNVKDRRIF 38 (71)
T ss_dssp EEET-TSCC---EEE--ETTCSEEEET-TTEEEECCSSSCB
T ss_pred EECC-CCCE---EEE--cCCCcEEECC-CCCeeeeceEEEE
Confidence 6799 9998 444 4667789998 9999888654433
No 33
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=61.25 E-value=2.6 Score=39.17 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=25.2
Q ss_pred cccCCCCCCCCceEEEec-----cCCeEeeecccccCcc
Q psy15553 97 FVLCPECDNPETDLVVSA-----KKGTIQQVCKACGFHG 130 (489)
Q Consensus 97 yVlC~~C~~PeT~l~~~~-----k~~~~~l~C~ACG~~~ 130 (489)
-+.||.|++++..+.-.. +.-++|..|..||++-
T Consensus 137 ~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w 175 (178)
T 3po3_S 137 RFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRW 175 (178)
T ss_dssp SSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEE
T ss_pred CcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCee
Confidence 358999999998775311 1346799999999874
No 34
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=59.19 E-value=5 Score=34.37 Aligned_cols=33 Identities=30% Similarity=0.569 Sum_probs=25.7
Q ss_pred ccCCCCCCCCceEEEec-----cCCeEeeecccccCcc
Q psy15553 98 VLCPECDNPETDLVVSA-----KKGTIQQVCKACGFHG 130 (489)
Q Consensus 98 VlC~~C~~PeT~l~~~~-----k~~~~~l~C~ACG~~~ 130 (489)
+.||.|++.+..+.-.+ +.-++|..|..||++-
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w 110 (113)
T 3h0g_I 73 KECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAF 110 (113)
T ss_dssp SCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCC
T ss_pred cCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEE
Confidence 79999999998876421 2355789999999874
No 35
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=59.05 E-value=3.8 Score=35.12 Aligned_cols=36 Identities=17% Similarity=0.418 Sum_probs=25.1
Q ss_pred ccCCCCCCCCceEEEeccCCeEeeecccccCcccccc
Q psy15553 98 VLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQF 134 (489)
Q Consensus 98 VlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~~v~~ 134 (489)
-.||.|+|. ..+..+..++...+.|..||+...++.
T Consensus 5 ~FCp~Cgn~-L~~~~~~~~~~~~~~C~~C~y~~~~~~ 40 (113)
T 3h0g_I 5 QYCIECNNM-LYPREDKVDRVLRLACRNCDYSEIAAT 40 (113)
T ss_dssp CCCSSSCCC-CEECCCTTTCCCCEECSSSCCEECCSC
T ss_pred eeCcCCCCE-eeEcccCCCCeeEEECCCCCCeEEcCC
Confidence 469999998 222221124567889999999988863
No 36
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=58.70 E-value=3.3 Score=32.80 Aligned_cols=30 Identities=23% Similarity=0.516 Sum_probs=23.4
Q ss_pred cccCCCCCCCCceEEEeccCCeEeeecccccCcc
Q psy15553 97 FVLCPECDNPETDLVVSAKKGTIQQVCKACGFHG 130 (489)
Q Consensus 97 yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~ 130 (489)
-|.||.|.|.-|... .-.....|..||..=
T Consensus 7 ~VKCp~C~niq~VFS----hA~tvV~C~~Cg~~L 36 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFD----HPSTIVKCIICGRTV 36 (66)
T ss_dssp EEECTTTCCEEEEES----SCSSCEECSSSCCEE
T ss_pred EEECCCCCCceEEEe----cCceEEEcccCCCEE
Confidence 489999999877663 445678999999763
No 37
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=58.38 E-value=9.1 Score=31.95 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=23.1
Q ss_pred ccCCCCCCCCceEEEeccCCeEeeecccccCcccc
Q psy15553 98 VLCPECDNPETDLVVSAKKGTIQQVCKACGFHGML 132 (489)
Q Consensus 98 VlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~~v 132 (489)
.+||-|.--.-.+.+++.++ .-+|-+||..+.+
T Consensus 38 ~~CPfh~e~~pSf~V~~~k~--~~~Cf~cg~gGd~ 70 (103)
T 1d0q_A 38 GLCPFHGEKTPSFSVSPEKQ--IFHCFGCGAGGNA 70 (103)
T ss_dssp ECCSSSCCSSCCEEEETTTT--EEEETTTCCEECH
T ss_pred EECCCCCCCCCcEEEEcCCC--EEEECCCCCCCCH
Confidence 48999974333677765444 5689999987654
No 38
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=58.20 E-value=5.9 Score=39.64 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=25.8
Q ss_pred cccCCCCCCCCceEEEec-----cCCeEeeecccccCcc
Q psy15553 97 FVLCPECDNPETDLVVSA-----KKGTIQQVCKACGFHG 130 (489)
Q Consensus 97 yVlC~~C~~PeT~l~~~~-----k~~~~~l~C~ACG~~~ 130 (489)
-+.||.|+..++.+.--. +.-++|..|..||++-
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w 306 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRW 306 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCce
Confidence 468999999999875421 2446899999999963
No 39
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=58.06 E-value=19 Score=30.45 Aligned_cols=69 Identities=16% Similarity=0.123 Sum_probs=48.8
Q ss_pred CCCcEEEEeccCCC-eeEEEechHHHHHHhCCCCChhhhHHHHhhcCceeeecCCC---eEEEEeccchHHHHHHHHH
Q psy15553 19 MPKLIAKVEGKGNG-IKTVIVNMADVAKAIGRPPTYPTKYFGCELGAQTKLDHKND---RFIVNGSHDVVKLQDLLDG 92 (489)
Q Consensus 19 mP~~~~kieGkgng-iKTvi~N~~dIakaL~R~p~~~~kyf~~ELGa~~~~d~~~~---r~iinG~~~~~~lq~~L~~ 92 (489)
-+.+.++++-+..| .=|+|.+|. -.-++.-+.|.|...+|+.|++-+..+ ...|+|.|.....+=|+..
T Consensus 16 ~~~v~I~~~~R~g~K~VT~V~Gl~-----~~~dlk~laK~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~ 88 (101)
T 2xzm_F 16 QTHIHIRVEQRRGRKCFTTVEGIP-----PEFDYEKIMKYWKKWLSCNATIVEEDEGKKVIKLNGDHRNQIQQFLSEE 88 (101)
T ss_dssp SCCEEEEEEEEETTEEEEEEECCC-----TTSCTHHHHHHHHHHHTSCCCEEECSTTCEEEEEESCCHHHHHHHHHHH
T ss_pred CCeEEEEEEeccCCccEEEEecCC-----CchhHHHHHHHHHHHhcCCeEEecCCCCceEEEEeCcHHHHHHHHHHHc
Confidence 46688888776223 346677884 345678899999999999999852212 8999999987765555443
No 40
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=56.94 E-value=1.7 Score=34.34 Aligned_cols=36 Identities=14% Similarity=0.203 Sum_probs=25.6
Q ss_pred HHhhcccCCCCCCCCceEEEeccCCeEeeecccccCccccc
Q psy15553 93 FIRKFVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQ 133 (489)
Q Consensus 93 fI~~yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~~v~ 133 (489)
.+-....||.|+.| |..+...+ .+.|.+||...+|.
T Consensus 6 ~LLeiL~CP~ck~~---L~~~~~~g--~LvC~~c~~~YPI~ 41 (67)
T 2jny_A 6 QLLEVLACPKDKGP---LRYLESEQ--LLVNERLNLAYRID 41 (67)
T ss_dssp GGTCCCBCTTTCCB---CEEETTTT--EEEETTTTEEEEEE
T ss_pred HHHHHhCCCCCCCc---CeEeCCCC--EEEcCCCCccccCC
Confidence 34557899999995 43322333 57899999999984
No 41
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=56.32 E-value=1.9 Score=31.71 Aligned_cols=30 Identities=30% Similarity=0.680 Sum_probs=23.1
Q ss_pred ccCCCCCCCCceEEEeccCCeEeeecccccCc
Q psy15553 98 VLCPECDNPETDLVVSAKKGTIQQVCKACGFH 129 (489)
Q Consensus 98 VlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~ 129 (489)
..|..|+..+|-+-+....+ ..-|.|||-.
T Consensus 5 ~~C~~C~tt~Tp~WR~gp~G--~~LCNaCGl~ 34 (46)
T 1gnf_A 5 RECVNCGATATPLWRRDRTG--HYLCNACGLY 34 (46)
T ss_dssp CCCTTTCCCCCSSCBCCTTC--CCBCSHHHHH
T ss_pred CCCCCcCCCCCCcCccCCCC--CccchHHHHH
Confidence 46999999999988832233 3789999964
No 42
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=54.82 E-value=3.6 Score=29.89 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=20.8
Q ss_pred CCCceEEEecc-CCeEeeecccccCcccc
Q psy15553 105 NPETDLVVSAK-KGTIQQVCKACGFHGML 132 (489)
Q Consensus 105 ~PeT~l~~~~k-~~~~~l~C~ACG~~~~v 132 (489)
||.|.|+.++- ...-+..|.+||..-.+
T Consensus 1 n~n~~ii~~ple~~~~YRvC~~CgkPi~l 29 (44)
T 2lo3_A 1 NPNAQLIEDPLDKPIQYRVCEKCGKPLAL 29 (44)
T ss_dssp CCSSCCCCCCCCCCCCEEECTTTCCEEET
T ss_pred CCccchhhcccCccccchhhcccCCcchH
Confidence 68888887653 45569999999976544
No 43
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=53.08 E-value=2.6 Score=33.75 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=23.6
Q ss_pred cccCCCCCCCCceEEEeccCCeEeeecccccCcc
Q psy15553 97 FVLCPECDNPETDLVVSAKKGTIQQVCKACGFHG 130 (489)
Q Consensus 97 yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~ 130 (489)
-..|..|+..+|-+-+...... ..-|.|||-..
T Consensus 8 ~~~C~nC~tt~Tp~WRrg~~~~-g~LCNACGl~~ 40 (71)
T 2kae_A 8 SFQCSNCSVTETIRWRNIRSKE-GIQCNACFIYQ 40 (71)
T ss_dssp CCCCSSSCCSCCSSCCCCSSSS-CCCSSHHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCC-CccchHHHHHH
Confidence 3679999999999988310111 27899999543
No 44
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=52.49 E-value=6.1 Score=26.85 Aligned_cols=13 Identities=31% Similarity=0.828 Sum_probs=10.7
Q ss_pred HHHHHHHHHHccc
Q psy15553 414 SRAEPFIKWLREA 426 (489)
Q Consensus 414 k~a~pFIeWLkEA 426 (489)
++|+.||.||.+.
T Consensus 9 ~aakdFv~WL~ng 21 (31)
T 3c5t_B 9 EAVRLFIEWLKNG 21 (31)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC
Confidence 4688999999864
No 45
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=52.22 E-value=8.4 Score=33.43 Aligned_cols=35 Identities=20% Similarity=0.549 Sum_probs=24.1
Q ss_pred cCCCCCC---CCceEEEeccCC---eEeeecccccCccccc
Q psy15553 99 LCPECDN---PETDLVVSAKKG---TIQQVCKACGFHGMLQ 133 (489)
Q Consensus 99 lC~~C~~---PeT~l~~~~k~~---~~~l~C~ACG~~~~v~ 133 (489)
+|..|++ |--...+...++ .+...|..||+..-.+
T Consensus 67 ~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~p 107 (120)
T 1x0t_A 67 YCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYP 107 (120)
T ss_dssp BCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEEE
T ss_pred hccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEc
Confidence 7999998 532222212344 6899999999987765
No 46
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=52.05 E-value=8.3 Score=37.58 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcccCCCCCCCCceEEEeccCCeEeeecccccCccc
Q psy15553 87 QDLLDGFIRKFVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGM 131 (489)
Q Consensus 87 q~~L~~fI~~yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~~ 131 (489)
...|..|-..+--|+.|+.|-.. ....+...|.+||....
T Consensus 97 a~~l~~w~~~~~fC~~CG~~~~~-----~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 97 GVQLAEFYRSHKYCGYCGHEMYP-----SKTEWAMLCSHCRERYY 136 (269)
T ss_dssp HHHHHHHHHTTSBCTTTCCBEEE-----CSSSSCEEESSSSCEEC
T ss_pred HHHHHhhhhcCCccccCCCcCcc-----CCCceeeeCCCCCCEec
Confidence 44567788899999999988432 34567889999998654
No 47
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=52.01 E-value=2.4 Score=33.20 Aligned_cols=31 Identities=32% Similarity=0.685 Sum_probs=23.6
Q ss_pred ccCCCCCCCCceEEEeccCCeEeeecccccCcc
Q psy15553 98 VLCPECDNPETDLVVSAKKGTIQQVCKACGFHG 130 (489)
Q Consensus 98 VlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~ 130 (489)
..|..|+..+|-+-+....+. .-|.|||-..
T Consensus 8 ~~C~~C~tt~Tp~WR~gp~G~--~LCNACGl~~ 38 (63)
T 3dfx_A 8 TSCANCQTTTTTLWRRNANGD--PVCNACGLYY 38 (63)
T ss_dssp CCCTTTCCSCCSSCCCCTTSC--CCCHHHHHHH
T ss_pred CcCCCcCCCCCCccCCCCCCC--chhhHHHHHH
Confidence 469999999999887433343 7899999654
No 48
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=51.16 E-value=5.1 Score=31.43 Aligned_cols=29 Identities=24% Similarity=0.529 Sum_probs=22.2
Q ss_pred cccCCCCCCCCceEEEeccCCeEeeecccccCc
Q psy15553 97 FVLCPECDNPETDLVVSAKKGTIQQVCKACGFH 129 (489)
Q Consensus 97 yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~ 129 (489)
-|.||.|.|.-|.. ..-.....|..||..
T Consensus 15 ~VkCp~C~~~q~VF----Sha~t~V~C~~Cgt~ 43 (63)
T 3j20_W 15 RVKCIDCGNEQIVF----SHPATKVRCLICGAT 43 (63)
T ss_dssp EEECSSSCCEEEEE----SSCSSCEECSSSCCE
T ss_pred EEECCCCCCeeEEE----ecCCeEEEccCcCCE
Confidence 48999999876665 344567889999976
No 49
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=51.01 E-value=4 Score=41.20 Aligned_cols=31 Identities=29% Similarity=0.581 Sum_probs=23.3
Q ss_pred ccCCCCCCCCceEEEeccCCeEeeecccccCcc
Q psy15553 98 VLCPECDNPETDLVVSAKKGTIQQVCKACGFHG 130 (489)
Q Consensus 98 VlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~ 130 (489)
..||.|+++.+.++.|. ..-.+.|..||..-
T Consensus 22 ~~Cp~Cg~~~~~iv~D~--~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 22 LTCPECKVYPPKIVERF--SEGDVVCALCGLVL 52 (345)
T ss_dssp CCCSTTCCSCCCCCCCS--SSCSCCCSSSCCCC
T ss_pred CcCcCCCCCCCceEEEC--CCCCEecCCCCeEc
Confidence 57999999866777643 33478999999853
No 50
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=49.16 E-value=8.9 Score=33.46 Aligned_cols=35 Identities=23% Similarity=0.504 Sum_probs=23.9
Q ss_pred cCCCCCC---CCceEEEeccCC---eEeeecccccCccccc
Q psy15553 99 LCPECDN---PETDLVVSAKKG---TIQQVCKACGFHGMLQ 133 (489)
Q Consensus 99 lC~~C~~---PeT~l~~~~k~~---~~~l~C~ACG~~~~v~ 133 (489)
.|..|++ |-....+...++ .+...|..||+..-.+
T Consensus 62 ~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~p 102 (123)
T 2k3r_A 62 YCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRYP 102 (123)
T ss_dssp BCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred hccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEe
Confidence 7999998 532222212333 6899999999987765
No 51
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=49.00 E-value=11 Score=33.49 Aligned_cols=16 Identities=31% Similarity=0.958 Sum_probs=12.6
Q ss_pred cccCCCCCCCCceEEE
Q psy15553 97 FVLCPECDNPETDLVV 112 (489)
Q Consensus 97 yVlC~~C~~PeT~l~~ 112 (489)
|..||.|++|+..++.
T Consensus 107 ~~~CP~Cgs~~~~i~~ 122 (139)
T 3a43_A 107 FLACPKCGSHDFEVVK 122 (139)
T ss_dssp GCSCSSSSCCCEEEEE
T ss_pred CCcCccccCCccEEec
Confidence 5778888888888765
No 52
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=47.70 E-value=6 Score=32.48 Aligned_cols=29 Identities=21% Similarity=0.503 Sum_probs=22.7
Q ss_pred cccCCCCCCCCceEEEeccCCeEeeecccccCc
Q psy15553 97 FVLCPECDNPETDLVVSAKKGTIQQVCKACGFH 129 (489)
Q Consensus 97 yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~ 129 (489)
-|.||.|.|.-|.. ..-.....|..||..
T Consensus 32 ~VkCp~C~n~q~VF----ShA~t~V~C~~Cg~~ 60 (81)
T 2xzm_6 32 DVKCAQCQNIQMIF----SNAQSTIICEKCSAI 60 (81)
T ss_dssp EEECSSSCCEEEEE----TTCSSCEECSSSCCE
T ss_pred EeECCCCCCeeEEE----ecCccEEEccCCCCE
Confidence 48999999976665 344567899999976
No 53
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=47.64 E-value=8.8 Score=28.46 Aligned_cols=29 Identities=21% Similarity=0.531 Sum_probs=19.5
Q ss_pred cccCCCCCCCCceEEEeccCCeEeeecccccCcc
Q psy15553 97 FVLCPECDNPETDLVVSAKKGTIQQVCKACGFHG 130 (489)
Q Consensus 97 yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~ 130 (489)
+-.||.|+++- .+.- .. --+.|..||...
T Consensus 19 ~k~CP~CG~~~-fm~~--~~--~R~~C~kCG~t~ 47 (50)
T 3j20_Y 19 NKFCPRCGPGV-FMAD--HG--DRWACGKCGYTE 47 (50)
T ss_dssp SEECSSSCSSC-EEEE--CS--SEEECSSSCCEE
T ss_pred cccCCCCCCce-EEec--CC--CeEECCCCCCEE
Confidence 56799999863 2332 22 357999999763
No 54
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=47.10 E-value=5.3 Score=31.48 Aligned_cols=32 Identities=28% Similarity=0.592 Sum_probs=24.0
Q ss_pred ccCCCCCCCCceEEEeccCCeEeeecccccCccc
Q psy15553 98 VLCPECDNPETDLVVSAKKGTIQQVCKACGFHGM 131 (489)
Q Consensus 98 VlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~~ 131 (489)
..|..|+.-+|-+-+..-.+. .-|.|||-...
T Consensus 10 ~~C~~C~t~~Tp~WR~gp~G~--~LCNaCGl~~~ 41 (66)
T 4gat_A 10 TTCTNCFTQTTPLWRRNPEGQ--PLCNACGLFLK 41 (66)
T ss_dssp CCCTTTCCCCCSSCEEETTTE--EECHHHHHHHH
T ss_pred CCCCCCCCCCCCcCCcCCCCC--CccHHHHHHHH
Confidence 479999999999887433443 66999996543
No 55
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=46.23 E-value=73 Score=32.15 Aligned_cols=74 Identities=14% Similarity=0.202 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHHHHHHhhh-------------------hHHHhhHHHHHHHHhhccCcchHHHHHHHhhccccccchHH
Q psy15553 348 DIKAQRYLLNGIEQVIALHK-------------------EKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKEL 408 (489)
Q Consensus 348 ~~~~Q~~lL~alE~~~~~~~-------------------~~l~~~~~~ILk~LYD~DILeEE~Il~W~ek~skk~v~ke~ 408 (489)
+...|+-+|.-|+.+...+. |. ...+...|..++....++|..+...|..... +
T Consensus 173 d~~~k~Kvl~li~d~f~~~~~~~~~~~~~~~kR~~e~~~~~-~q~w~~~~q~~iq~k~~dE~~~r~fF~~L~~------i 245 (315)
T 3qml_C 173 DKQLQIKVLELISKILKADMYENDDTNLILFKRNAENWSSN-LQEWANEFQEMVQNKSIDELHTRTFFDTLYN------L 245 (315)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTC--------------------CHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH------H
T ss_pred CHHHHHHHHHHHHHHcccccccccccccchhhhcccccCch-HHHHHHHHHHHHhccccCHHHHHHHHHHHHH------H
Confidence 45677777777776663110 11 1125567777888888888888888865321 1
Q ss_pred HHHHH---HHHHHHHHHHccccc
Q psy15553 409 SAEIR---SRAEPFIKWLREAEE 428 (489)
Q Consensus 409 ~kkvr---k~a~pFIeWLkEAEE 428 (489)
.+..+ +-...|+.||...-|
T Consensus 246 k~~~~~~lK~~~~FLnWLa~E~e 268 (315)
T 3qml_C 246 KKIFKSDITINKGFLNWLAQQCK 268 (315)
T ss_dssp HHHHGGGSCCCHHHHHHHHHHHH
T ss_pred HHhcccccCCCHHHHHHHHHHHH
Confidence 22222 223469999975443
No 56
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=45.87 E-value=11 Score=35.80 Aligned_cols=30 Identities=17% Similarity=0.505 Sum_probs=22.6
Q ss_pred cccCCCCCCCCceEEEeccCCeEeeecccccCcc
Q psy15553 97 FVLCPECDNPETDLVVSAKKGTIQQVCKACGFHG 130 (489)
Q Consensus 97 yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~ 130 (489)
...||.|+.-+. +.+. .++ ...|..||+..
T Consensus 14 ~~~CP~Cg~~d~-~~~~-~dg--~~~C~~Cg~~~ 43 (255)
T 1nui_A 14 HIPCDNCGSSDG-NSLF-SDG--HTFCYVCEKWT 43 (255)
T ss_dssp EECCSSSCCSSC-EEEE-TTS--CEEETTTCCEE
T ss_pred CCcCCCCCCCCC-ceEe-CCC--CeecccCCCcC
Confidence 478999998775 6654 344 48999999864
No 57
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=45.61 E-value=8.7 Score=33.54 Aligned_cols=79 Identities=15% Similarity=0.367 Sum_probs=32.1
Q ss_pred echHHHHHHhCCCCChhhhHHHHhhcCceeeecCCCeEEEEeccchHHHHHHHHHHHhhcccCCCCCCCCceEEEeccCC
Q psy15553 38 VNMADVAKAIGRPPTYPTKYFGCELGAQTKLDHKNDRFIVNGSHDVVKLQDLLDGFIRKFVLCPECDNPETDLVVSAKKG 117 (489)
Q Consensus 38 ~N~~dIakaL~R~p~~~~kyf~~ELGa~~~~d~~~~r~iinG~~~~~~lq~~L~~fI~~yVlC~~C~~PeT~l~~~~k~~ 117 (489)
+|+.-+-..|++.-....|- ..-.|..|.| +-|| |+.-.+.+.++... -..-..||.|+. +.+.+. -.+
T Consensus 9 ~~~~~~~~~~~~~~~~Makr-tKkVGi~Gky---G~RY---GaslRK~vkkiE~~-q~akytCPfCGk--~~vKR~-avG 77 (116)
T 3cc2_Z 9 PNLEGLMWPLGGQQTTMASK-SGKTGSSGRF---GARY---GRVSRRRVAEIESE-MNEDHACPNCGE--DRVDRQ-GTG 77 (116)
T ss_dssp --------------------------CGGGG---TTCS---CHHHHHHHHHHHHH-HHSCEECSSSCC--EEEEEE-ETT
T ss_pred CchhhhhhhhhhhHHHHHhc-cCcccccccc---cccc---chHHHHHHHHHHHH-hccCCcCCCCCC--ceeEec-Cce
Confidence 35555555566553322221 1125666665 3355 55545555554222 223357999997 456652 233
Q ss_pred eEeeecccccCc
Q psy15553 118 TIQQVCKACGFH 129 (489)
Q Consensus 118 ~~~l~C~ACG~~ 129 (489)
+-.|..||..
T Consensus 78 --IW~C~~Cgk~ 87 (116)
T 3cc2_Z 78 --IWQCSYCDYK 87 (116)
T ss_dssp --EEEETTTCCE
T ss_pred --eEECCCCCCE
Confidence 4599999987
No 58
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=42.71 E-value=8.7 Score=31.60 Aligned_cols=29 Identities=28% Similarity=0.511 Sum_probs=21.9
Q ss_pred cccCCCCCCCCceEEEeccCCeEeeecccccCc
Q psy15553 97 FVLCPECDNPETDLVVSAKKGTIQQVCKACGFH 129 (489)
Q Consensus 97 yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~ 129 (489)
-|.|+.|.|.-|... .-.....|..||..
T Consensus 34 ~VkCp~C~~~q~VFS----ha~t~V~C~~Cg~~ 62 (82)
T 3u5c_b 34 DVKCPGCLNITTVFS----HAQTAVTCESCSTI 62 (82)
T ss_dssp EEECTTSCSCEEEES----BCSSCCCCSSSCCC
T ss_pred EEECCCCCCeeEEEe----cCCeEEEccccCCE
Confidence 489999999776664 34457889999875
No 59
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=41.37 E-value=8.1 Score=32.05 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=21.6
Q ss_pred ccCCCCCCCCceEEEeccCCeEeeecccccCc
Q psy15553 98 VLCPECDNPETDLVVSAKKGTIQQVCKACGFH 129 (489)
Q Consensus 98 VlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~ 129 (489)
|.|+.|.+.-|.. ..-.....|..||..
T Consensus 37 VkCp~C~~~~~VF----ShA~t~V~C~~Cgtv 64 (86)
T 3iz6_X 37 VKCQGCFNITTVF----SHSQTVVVCPGCQTV 64 (86)
T ss_dssp EECTTTCCEEEEE----TTCSSCCCCSSSCCC
T ss_pred EECCCCCCeeEEE----ecCCcEEEccCCCCE
Confidence 9999999876655 344567889999975
No 60
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=41.29 E-value=16 Score=36.61 Aligned_cols=36 Identities=22% Similarity=0.511 Sum_probs=26.0
Q ss_pred cccCCCCCCCCceEEEec---cCCeEeeecccccCcccc
Q psy15553 97 FVLCPECDNPETDLVVSA---KKGTIQQVCKACGFHGML 132 (489)
Q Consensus 97 yVlC~~C~~PeT~l~~~~---k~~~~~l~C~ACG~~~~v 132 (489)
.-.||.|+++=+.-++.. ..+.-++.|.-||..-.+
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~ 220 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY 220 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee
Confidence 578999998865533321 356679999999988655
No 61
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=40.20 E-value=13 Score=28.07 Aligned_cols=33 Identities=24% Similarity=0.728 Sum_probs=24.8
Q ss_pred HhhcccCCCCCCCCceEEEeccCCeEeeecc--cccCccccc
Q psy15553 94 IRKFVLCPECDNPETDLVVSAKKGTIQQVCK--ACGFHGMLQ 133 (489)
Q Consensus 94 I~~yVlC~~C~~PeT~l~~~~k~~~~~l~C~--ACG~~~~v~ 133 (489)
+-+..-||.|+.| |..+ . -.+.|. +||...+|.
T Consensus 7 lL~iL~CP~c~~~---L~~~--~--~~L~C~~~~c~~~YPI~ 41 (56)
T 2kpi_A 7 LLEILACPACHAP---LEER--D--AELICTGQDCGLAYPVR 41 (56)
T ss_dssp CTTSCCCSSSCSC---EEEE--T--TEEEECSSSCCCEEEEE
T ss_pred HHhheeCCCCCCc---ceec--C--CEEEcCCcCCCcEEeeE
Confidence 3456789999996 5552 2 357899 999998884
No 62
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=39.93 E-value=19 Score=37.47 Aligned_cols=33 Identities=30% Similarity=0.809 Sum_probs=22.4
Q ss_pred ccCCCCCCCC-ceEEEecc----CCe--EeeecccccCccc
Q psy15553 98 VLCPECDNPE-TDLVVSAK----KGT--IQQVCKACGFHGM 131 (489)
Q Consensus 98 VlC~~C~~Pe-T~l~~~~k----~~~--~~l~C~ACG~~~~ 131 (489)
..||.|+.+= |.+.. .+ +.+ ....|..||+++.
T Consensus 221 s~Cp~C~~~~~t~~~~-~~IP~F~eViims~~C~~CGyr~n 260 (404)
T 2qkd_A 221 TNCPECNAPAQTNMKL-VQIPHFKEVIIMATNCENCGHRTN 260 (404)
T ss_dssp ECCTTTCCTTCEEEEE-ECCTTSCCEEEEEEECSSSCCEEE
T ss_pred ccCccCCCccEEEEEE-EeCCCCCcEEEEEEECCCCCCccc
Confidence 5899999874 44433 12 333 3678999999964
No 63
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=37.54 E-value=21 Score=36.41 Aligned_cols=51 Identities=18% Similarity=0.263 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHhhc------ccCCCCCCCCc--eEE---E--ec------cCCeEeeecccccCcccc
Q psy15553 82 DVVKLQDLLDGFIRKF------VLCPECDNPET--DLV---V--SA------KKGTIQQVCKACGFHGML 132 (489)
Q Consensus 82 ~~~~lq~~L~~fI~~y------VlC~~C~~PeT--~l~---~--~~------k~~~~~l~C~ACG~~~~v 132 (489)
..-.|+.||+=|=..| -.|+.|+++.+ ... . .+ -.++-.-+|..||+..-.
T Consensus 98 ~d~ll~~LL~WFk~~fF~wvn~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~~rF 167 (335)
T 1x3z_A 98 TDYLVKELLRYFKQDFFKWCNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITRF 167 (335)
T ss_dssp HHHHHHHHHHHHHHTTCEECSSCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEEEE
T ss_pred hHHHHHHHHHHHHhcCCEeeCCCCccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCccccc
Confidence 4456788888886664 36999999863 331 0 00 123567889999997654
No 64
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=36.59 E-value=12 Score=30.67 Aligned_cols=28 Identities=25% Similarity=0.566 Sum_probs=19.5
Q ss_pred ccCCCCCCCCceEEEeccCCeEeeecccccCcc
Q psy15553 98 VLCPECDNPETDLVVSAKKGTIQQVCKACGFHG 130 (489)
Q Consensus 98 VlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~ 130 (489)
-.||.|+.+ +++.+..+ .++|..||+.-
T Consensus 28 y~Cp~CG~~---~v~r~atG--iW~C~~Cg~~~ 55 (83)
T 1vq8_Z 28 HACPNCGED---RVDRQGTG--IWQCSYCDYKF 55 (83)
T ss_dssp EECSSSCCE---EEEEEETT--EEEETTTCCEE
T ss_pred CcCCCCCCc---ceeccCCC--eEECCCCCCEe
Confidence 479999973 33322334 78999999873
No 65
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=33.86 E-value=8.6 Score=34.08 Aligned_cols=33 Identities=24% Similarity=0.445 Sum_probs=0.0
Q ss_pred ccCCCCCCCCceEEEec-----cCCeEeeecccccCcc
Q psy15553 98 VLCPECDNPETDLVVSA-----KKGTIQQVCKACGFHG 130 (489)
Q Consensus 98 VlC~~C~~PeT~l~~~~-----k~~~~~l~C~ACG~~~ 130 (489)
+.||.|++.+..+...+ +.-++|..|..||++-
T Consensus 93 ~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w 130 (133)
T 3qt1_I 93 RECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRW 130 (133)
T ss_dssp --------------------------------------
T ss_pred CCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCEe
Confidence 79999999998765311 2456799999999864
No 66
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=32.37 E-value=32 Score=29.67 Aligned_cols=36 Identities=17% Similarity=0.461 Sum_probs=25.5
Q ss_pred cccCCCCCCCCceEEEeccCCeEeeecccccCccccc
Q psy15553 97 FVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQ 133 (489)
Q Consensus 97 yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~~v~ 133 (489)
..-||.|+|-=.--. +...+...+.|..||+...++
T Consensus 4 ~~FCp~CgnlL~~~~-~~~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 4 FRFCRDCNNMLYPRE-DKENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp CCBCSSSCCBCEEEE-ETTTTEEEEECSSSSCEEECS
T ss_pred CCcccccCccCcccc-cCcCCCCEEECCcCCCeeecC
Confidence 356999998643222 112567899999999998875
No 67
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=32.26 E-value=7.3 Score=31.00 Aligned_cols=34 Identities=26% Similarity=0.540 Sum_probs=22.1
Q ss_pred ccCCCCCCCCceEEEeccCCeEeeecccccCcccccchhh
Q psy15553 98 VLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQFNHK 137 (489)
Q Consensus 98 VlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~~v~~~~k 137 (489)
-+|+.|+..-... .. -.++|..||++-....|.+
T Consensus 29 Y~C~~CG~~~e~~----~~--d~irCp~CG~RILyK~R~~ 62 (70)
T 1twf_L 29 YICAECSSKLSLS----RT--DAVRCKDCGHRILLKARTK 62 (70)
T ss_dssp EECSSSCCEECCC----TT--STTCCSSSCCCCCBCCCCS
T ss_pred EECCCCCCcceeC----CC--CCccCCCCCceEeEecCCC
Confidence 4799999752221 12 2458999999877665543
No 68
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=32.21 E-value=9.9 Score=34.12 Aligned_cols=36 Identities=11% Similarity=0.256 Sum_probs=24.6
Q ss_pred cccCCCCCCCCceEEEeccC-CeEeeecccccCcccccc
Q psy15553 97 FVLCPECDNPETDLVVSAKK-GTIQQVCKACGFHGMLQF 134 (489)
Q Consensus 97 yVlC~~C~~PeT~l~~~~k~-~~~~l~C~ACG~~~~v~~ 134 (489)
|-.||.|+.+-+.... .+ ......|..||......+
T Consensus 3 ~~~C~~CG~~~~~~~~--~G~~~~~~~~~~~~~~~~~~~ 39 (189)
T 3cng_A 3 MKFCSQCGGEVILRIP--EGDTLPRYICPKCHTIHYQNP 39 (189)
T ss_dssp CCBCTTTCCBCEEECC--TTCSSCEEEETTTTEEECCCC
T ss_pred cccCchhCCccccccc--cCCCCcceECCCCCCccCCCC
Confidence 6689999999886543 32 334678999996554333
No 69
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=31.85 E-value=20 Score=23.95 Aligned_cols=12 Identities=42% Similarity=1.024 Sum_probs=9.8
Q ss_pred HHHHHHHHHHcc
Q psy15553 414 SRAEPFIKWLRE 425 (489)
Q Consensus 414 k~a~pFIeWLkE 425 (489)
.+|+.||+||..
T Consensus 17 ~aak~fv~wL~~ 28 (29)
T 2g49_C 17 RRAQDFVQWLMN 28 (29)
T ss_pred HHHHHHHHHHhc
Confidence 458899999974
No 70
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=31.44 E-value=25 Score=29.63 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=19.3
Q ss_pred cCCCCCCCCceEE-----EeccCCe------EeeecccccCccc
Q psy15553 99 LCPECDNPETDLV-----VSAKKGT------IQQVCKACGFHGM 131 (489)
Q Consensus 99 lC~~C~~PeT~l~-----~~~k~~~------~~l~C~ACG~~~~ 131 (489)
.||.|+...+... ..-++.. -...|..||..-.
T Consensus 4 ~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~ 47 (133)
T 3o9x_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIM 47 (133)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEEC
T ss_pred CCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEee
Confidence 6999998754321 1113322 3456888887643
No 71
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=30.03 E-value=24 Score=24.25 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=10.5
Q ss_pred HHHHHHHHHHccc
Q psy15553 414 SRAEPFIKWLREA 426 (489)
Q Consensus 414 k~a~pFIeWLkEA 426 (489)
.+++.||.||...
T Consensus 17 ~aak~fl~wL~~~ 29 (33)
T 2l63_A 17 LAARDFINWLIQT 29 (33)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 4688999999854
No 72
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=28.70 E-value=38 Score=28.77 Aligned_cols=16 Identities=13% Similarity=0.397 Sum_probs=10.8
Q ss_pred cc-cCCCCCCCCceEEE
Q psy15553 97 FV-LCPECDNPETDLVV 112 (489)
Q Consensus 97 yV-lC~~C~~PeT~l~~ 112 (489)
+. .||.|++|.+.++-
T Consensus 89 ~~~~CP~Cgs~~~~i~~ 105 (119)
T 2kdx_A 89 DYGVCEKCHSKNVIITQ 105 (119)
T ss_dssp TTCCCSSSSSCCCEEEE
T ss_pred CCCcCccccCCCcEEec
Confidence 45 67777777776654
No 73
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=28.27 E-value=24 Score=25.11 Aligned_cols=13 Identities=31% Similarity=0.828 Sum_probs=10.6
Q ss_pred HHHHHHHHHHccc
Q psy15553 414 SRAEPFIKWLREA 426 (489)
Q Consensus 414 k~a~pFIeWLkEA 426 (489)
.+|+.||+||...
T Consensus 17 ~aak~fv~wL~~~ 29 (39)
T 1jrj_A 17 EAVRLFIEWLKNG 29 (39)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 4688999999864
No 74
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.26 E-value=12 Score=28.13 Aligned_cols=27 Identities=26% Similarity=0.603 Sum_probs=18.8
Q ss_pred HhhcccCCCCCCCCceEEEeccCCeEeeecccccCc
Q psy15553 94 IRKFVLCPECDNPETDLVVSAKKGTIQQVCKACGFH 129 (489)
Q Consensus 94 I~~yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~ 129 (489)
....-+|+.|+.. . - .-...|.-||+.
T Consensus 11 ~~~k~iCpkC~a~-----~--~--~gaw~CrKCG~~ 37 (51)
T 3j21_g 11 IFKKYVCLRCGAT-----N--P--WGAKKCRKCGYK 37 (51)
T ss_dssp SSSEEECTTTCCE-----E--C--TTCSSCSSSSSC
T ss_pred HhCCccCCCCCCc-----C--C--CCceecCCCCCc
Confidence 3345679999986 2 2 235688899998
No 75
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=28.10 E-value=29 Score=29.10 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=27.3
Q ss_pred eccchHHHHHHHHHHHhhcccCCCCCCCCceEEEeccCCeEeeecccccCc
Q psy15553 79 GSHDVVKLQDLLDGFIRKFVLCPECDNPETDLVVSAKKGTIQQVCKACGFH 129 (489)
Q Consensus 79 G~~~~~~lq~~L~~fI~~yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~ 129 (489)
|+--...+.++-..=-.+| .||.|+.. .+.+ ...-+-+|..||..
T Consensus 19 G~slRK~vkkie~~q~~ky-~CpfCgk~--~vkR---~a~GIW~C~~Cg~~ 63 (92)
T 3iz5_m 19 GASLRKQIKKMEVSQHSKY-FCEFCGKF--AVKR---KAVGIWGCKDCGKV 63 (92)
T ss_dssp CHHHHHHHHHHHHHHHSCB-CCTTTCSS--CBEE---EETTEEECSSSCCE
T ss_pred ChHHHHHHHHHHHHHhccc-cCcccCCC--eeEe---cCcceEEcCCCCCE
Confidence 4444445555444444555 79999987 3544 22335589999875
No 76
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=27.97 E-value=15 Score=28.33 Aligned_cols=25 Identities=24% Similarity=0.852 Sum_probs=17.2
Q ss_pred hhcccCCCCCCCCceEEEeccCCeEeeecccccCc
Q psy15553 95 RKFVLCPECDNPETDLVVSAKKGTIQQVCKACGFH 129 (489)
Q Consensus 95 ~~yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~ 129 (489)
-..|.|+.|+.+ + +-...|..||+-
T Consensus 28 p~l~~c~~cG~~-----~-----~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 28 PNLTECPQCHGK-----K-----LSHHICPNCGYY 52 (60)
T ss_dssp CCCEECTTTCCE-----E-----CTTBCCTTTCBS
T ss_pred CCceECCCCCCE-----e-----CCceEcCCCCcC
Confidence 346788888876 2 346678888854
No 77
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=27.69 E-value=29 Score=23.35 Aligned_cols=12 Identities=25% Similarity=0.736 Sum_probs=9.5
Q ss_pred HHHHHHHHHHcc
Q psy15553 414 SRAEPFIKWLRE 425 (489)
Q Consensus 414 k~a~pFIeWLkE 425 (489)
.+++.||+||-.
T Consensus 17 ~~ak~fv~wLl~ 28 (30)
T 1t5q_A 17 IHQQDFVNWLLA 28 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 458899999964
No 78
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=26.84 E-value=21 Score=28.86 Aligned_cols=20 Identities=15% Similarity=0.461 Sum_probs=14.4
Q ss_pred eEeeecccccCcccccchhh
Q psy15553 118 TIQQVCKACGFHGMLQFNHK 137 (489)
Q Consensus 118 ~~~l~C~ACG~~~~v~~~~k 137 (489)
.-.-.|.+||.+.+.++..+
T Consensus 38 ~~lPpC~aCGIkP~~~~i~~ 57 (76)
T 2j9u_B 38 LPTPICINCGVPADYELTKS 57 (76)
T ss_dssp SSCCBCTTTCCBCCHHHHGG
T ss_pred CCCCcccccCccCCHHHHHH
Confidence 45778999998887765443
No 79
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=26.50 E-value=1.4e+02 Score=33.48 Aligned_cols=61 Identities=10% Similarity=0.129 Sum_probs=50.3
Q ss_pred HHHhhhhhhhhcccccchHHHHHHHHHHHHHHHhhhhHHHhhHHHHHHHHhhccCcchHHHHHHHh
Q psy15553 332 LILLDKQSTVLRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAE 397 (489)
Q Consensus 332 ~~l~~~~~~L~~fv~~~~~~Q~~lL~alE~~~~~~~~~l~~~~~~ILk~LYD~DILeEE~Il~W~e 397 (489)
..|..+...|+.++. ++..|..+|.++-++. .++|. .+..|+..|-...||+-.+|..|.=
T Consensus 545 ~~lery~~~lk~l~~-~~~~q~~il~~v~~~W-~~~~q---~~~ividkll~~~iv~p~~Vv~w~f 605 (771)
T 1h2v_C 545 SALAKFHEVFKTLAE-SDEGKLHVLRVMFEVW-RNHPQ---MIAVLVDKMIRTQIVDCAAVANWIF 605 (771)
T ss_dssp HHHHHTHHHHHHHTS-SHHHHHHHHHHHHHHH-TTCHH---HHHHHHHHHHHTTSSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHH-hcCCc---eEehHHHHHHhcCCCCHHHHHHHHc
Confidence 456777778888888 4789999999999988 45665 3567888888999999999999973
No 80
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=25.89 E-value=14 Score=31.22 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=18.5
Q ss_pred CCCceEEEecc-CCeEeeecccccCccc
Q psy15553 105 NPETDLVVSAK-KGTIQQVCKACGFHGM 131 (489)
Q Consensus 105 ~PeT~l~~~~k-~~~~~l~C~ACG~~~~ 131 (489)
+|.|.|+.++- ...-+..|.+||..=.
T Consensus 59 n~nt~ii~~~Ld~~~~YRvCn~CGkPI~ 86 (96)
T 3mhs_E 59 NPNAQLIEDPLDKPIQYRVCEKCGKPLA 86 (96)
T ss_dssp CTTCCCCSSTTSSSCCCEEETTTCCEEC
T ss_pred CCcchhhcccCCCcccchhhhccCCcee
Confidence 67788776532 3456889999997543
No 81
>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G-PR coupled receptor, glycoprotein, membrane, receptor, transdu transmembrane; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A
Probab=25.80 E-value=32 Score=23.13 Aligned_cols=12 Identities=42% Similarity=0.852 Sum_probs=9.9
Q ss_pred HHHHHHHHHHcc
Q psy15553 414 SRAEPFIKWLRE 425 (489)
Q Consensus 414 k~a~pFIeWLkE 425 (489)
+.++.||.||..
T Consensus 17 ~~ak~Fv~wL~~ 28 (31)
T 3iol_B 17 QAAKEFIAWLVK 28 (31)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc
Confidence 568899999964
No 82
>2b4n_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Homo sapiens} PDB: 2l70_A 2l71_A 2obu_A 2qkh_B*
Probab=25.52 E-value=29 Score=25.08 Aligned_cols=15 Identities=20% Similarity=0.594 Sum_probs=11.9
Q ss_pred HHHHHHHHHHccccc
Q psy15553 414 SRAEPFIKWLREAEE 428 (489)
Q Consensus 414 k~a~pFIeWLkEAEE 428 (489)
.+|+.||.||...-.
T Consensus 17 ~~akdFv~WL~~~k~ 31 (42)
T 2b4n_A 17 IHQQDFVNWLLAQKG 31 (42)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCC
Confidence 458889999987653
No 83
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=25.06 E-value=29 Score=26.86 Aligned_cols=26 Identities=27% Similarity=0.798 Sum_probs=16.6
Q ss_pred cccCCCCCCCCceEEEeccCCeEeeecccccCccccc
Q psy15553 97 FVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQ 133 (489)
Q Consensus 97 yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~~v~ 133 (489)
.+.|+.|+.. +| ...|..||..+.+.
T Consensus 6 mr~C~~CgvY--TL---------k~~CP~CG~~T~~~ 31 (60)
T 2apo_B 6 MKKCPKCGLY--TL---------KEICPKCGEKTVIP 31 (60)
T ss_dssp CEECTTTCCE--ES---------SSBCSSSCSBCBCC
T ss_pred ceeCCCCCCE--ec---------cccCcCCCCcCCCC
Confidence 3568888432 11 23499999887664
No 84
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=24.85 E-value=43 Score=32.75 Aligned_cols=54 Identities=15% Similarity=0.295 Sum_probs=36.4
Q ss_pred eccchHHHHH-HHHHHHhhcccCCCCCCC-CceEEEeccCCeEeeecccccCcccccc
Q psy15553 79 GSHDVVKLQD-LLDGFIRKFVLCPECDNP-ETDLVVSAKKGTIQQVCKACGFHGMLQF 134 (489)
Q Consensus 79 G~~~~~~lq~-~L~~fI~~yVlC~~C~~P-eT~l~~~~k~~~~~l~C~ACG~~~~v~~ 134 (489)
|-++.+++-. +=..++.+-..||.|++. =+.+.- ...+--.-|..|+...-+..
T Consensus 15 ~YkS~SQ~aRVLTE~Wv~~n~yCPnCG~~~l~~f~n--N~PVaDF~C~~C~EeyELKS 70 (257)
T 4esj_A 15 TYKSNSQKARILTEDWVYRQSYCPNCGNNPLNHFEN--NRPVADFYCNHCSEEFELKS 70 (257)
T ss_dssp HTTTCTTHHHHHHHHHHHHHCCCTTTCCSSCEEC------CCCEEECTTTCCEEEEEE
T ss_pred hccChhheehhhhHHHHHHCCcCCCCCChhhhhccC--CCcccccccCCcchhheecc
Confidence 3444444444 447899999999999994 445553 34555688999999888754
No 85
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=24.13 E-value=25 Score=36.63 Aligned_cols=33 Identities=27% Similarity=0.669 Sum_probs=22.1
Q ss_pred ccCCCCCCC-CceEEEecc----CCe--EeeecccccCccc
Q psy15553 98 VLCPECDNP-ETDLVVSAK----KGT--IQQVCKACGFHGM 131 (489)
Q Consensus 98 VlC~~C~~P-eT~l~~~~k----~~~--~~l~C~ACG~~~~ 131 (489)
.+||.|+.. .|.+... + +.+ ....|..||+++.
T Consensus 13 s~Cp~C~~~g~t~~~~~-~IP~F~eVii~Sf~C~~CGyrn~ 52 (404)
T 2qkd_A 13 SLCMNCYRNGTTRLLLT-KIPFFREIIVSSFSCEHCGWNNT 52 (404)
T ss_dssp EECTTTSSEEEEEEEEE-EETTTEEEEEEEEECTTTCCEEE
T ss_pred ccCCCCCCCceEEEEEE-cCCCCceEEEEEEECCCCCCchh
Confidence 579999944 5555531 2 233 4678999999854
No 86
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=23.99 E-value=43 Score=26.29 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=21.2
Q ss_pred cCCCCCCCCceE-----EEeccCCe------EeeecccccCccccc
Q psy15553 99 LCPECDNPETDL-----VVSAKKGT------IQQVCKACGFHGMLQ 133 (489)
Q Consensus 99 lC~~C~~PeT~l-----~~~~k~~~------~~l~C~ACG~~~~v~ 133 (489)
.||.|++.++.- ...-++.. -...|..||..-.-+
T Consensus 4 ~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~~~~ 49 (78)
T 3ga8_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNK 49 (78)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEECCH
T ss_pred ECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEEECH
Confidence 699999875421 12113332 356799999875543
No 87
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=22.92 E-value=50 Score=27.00 Aligned_cols=9 Identities=33% Similarity=1.198 Sum_probs=6.4
Q ss_pred ccCCCCCCC
Q psy15553 98 VLCPECDNP 106 (489)
Q Consensus 98 VlC~~C~~P 106 (489)
+.||.|.+|
T Consensus 3 ~~CP~C~~~ 11 (81)
T 2jrp_A 3 ITCPVCHHA 11 (81)
T ss_dssp CCCSSSCSC
T ss_pred CCCCCCCCc
Confidence 567777766
No 88
>2inp_L Phenol hydroxylase component PHM; DIIRON, four-helix bundle, regulatory protein, oxidoreductase; 2.30A {Pseudomonas stutzeri} PDB: 2inn_L 1hqi_A
Probab=22.79 E-value=1.1e+02 Score=25.25 Aligned_cols=51 Identities=16% Similarity=0.373 Sum_probs=32.8
Q ss_pred cEEEEeccCCCeeEEEechHHHHHHhCCCCChhhhHHHHhhcCceeeecCCCeEEE
Q psy15553 22 LIAKVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGCELGAQTKLDHKNDRFIV 77 (489)
Q Consensus 22 ~~~kieGkgngiKTvi~N~~dIakaL~R~p~~~~kyf~~ELGa~~~~d~~~~r~ii 77 (489)
.-++|++. ...+.++.+|.++|+||-+- ..|.-.=....|.++..++++++
T Consensus 36 a~vrI~a~----g~l~i~~~tieE~LGr~~~~-~elev~mss~~Gri~~~DD~~~~ 86 (89)
T 2inp_L 36 AMIRIQAE----KRLVINRETMEEKLGRDWDV-QEMLINVISIAGNVDEDDDHFIL 86 (89)
T ss_dssp TEEEEECB----SEEEECHHHHHHHHTSCCCG-GGTTTTC-CEESEEEEC--CEEE
T ss_pred CEEEEecC----CeEEEEHHHHHHHhCCCCcH-HHeeeeheeeeeEEEEeCCEEEE
Confidence 45778887 35677999999999999553 34433333455667766666654
No 89
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=22.37 E-value=31 Score=26.90 Aligned_cols=34 Identities=24% Similarity=0.646 Sum_probs=23.6
Q ss_pred cccCCCCCCCCceEEEeccCCeEeeecccccCcccccchh
Q psy15553 97 FVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQFNH 136 (489)
Q Consensus 97 yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~~v~~~~ 136 (489)
.-+|..|+..-. | + ..-.++|.-||++-....|.
T Consensus 21 ~Y~C~~Cg~~~~-l----~-~~~~iRC~~CG~RILyK~Rt 54 (63)
T 3h0g_L 21 IYLCADCGARNT-I----Q-AKEVIRCRECGHRVMYKMRT 54 (63)
T ss_dssp CCBCSSSCCBCC-C----C-SSSCCCCSSSCCCCCBCCCC
T ss_pred EEECCCCCCeee-c----C-CCCceECCCCCcEEEEEecC
Confidence 457999986544 2 2 23468999999997776553
No 90
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=21.92 E-value=35 Score=30.12 Aligned_cols=23 Identities=39% Similarity=0.653 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHccccccC
Q psy15553 408 LSAEIRSRAEPFIKWLREAEEED 430 (489)
Q Consensus 408 ~~kkvrk~a~pFIeWLkEAEEEs 430 (489)
+.-.|.++|.||=.||+.|+|+=
T Consensus 13 L~leFAKrAa~fNnW~e~A~EdL 35 (129)
T 1wlx_A 13 LHLEYAKRAAPFNNWMESAMEDL 35 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHhHHHHh
Confidence 45678899999999999999763
No 91
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=21.73 E-value=35 Score=30.15 Aligned_cols=37 Identities=16% Similarity=0.424 Sum_probs=24.4
Q ss_pred cccCCCCCCCCceEEEeccCCeEeeecccccCcccccc
Q psy15553 97 FVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQF 134 (489)
Q Consensus 97 yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~~v~~ 134 (489)
+-.||.|+|-=.--. +..++...+.|..||+...++.
T Consensus 24 ~~FCPeCgNmL~pke-d~~~~~l~~~CrtCgY~~~~~~ 60 (133)
T 3qt1_I 24 FRFCRDCNNMLYPRE-DKENNRLLFECRTCSYVEEAGS 60 (133)
T ss_dssp CCBCTTTCCBCBCCB-CTTTCCBCCBCSSSCCBCCCSC
T ss_pred CeeCCCCCCEeeECc-cCCCceeEEECCCCCCcEEcCC
Confidence 456999998422111 1123567899999999887653
No 92
>3ge3_E Toluene-4-monooxygenase system protein D; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.137.1.1 PDB: 3dhh_E* 3dhi_E 3ge8_E 3i5j_E 3i63_E 3q14_E 3q2a_E* 3q3m_E* 3q3n_E* 3q3o_E* 1g10_A 1g11_A 2bf2_A 3ri7_E 2bf5_A 2bf3_A* 2bf3_B*
Probab=21.02 E-value=1.2e+02 Score=25.81 Aligned_cols=52 Identities=10% Similarity=0.158 Sum_probs=35.4
Q ss_pred cEEEEeccCCCeeEEEechHHHHHHhCCCCChhhhHHHHhhcCceeeecCCCeEEEE
Q psy15553 22 LIAKVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGCELGAQTKLDHKNDRFIVN 78 (489)
Q Consensus 22 ~~~kieGkgngiKTvi~N~~dIakaL~R~p~~~~kyf~~ELGa~~~~d~~~~r~iin 78 (489)
.-++|++. ...+.++..|.+.|+||-+-- .|...=....|.++..++++++-
T Consensus 47 a~vrI~a~----g~L~i~r~tieE~LGr~~~~~-elev~mss~~Gri~~~DD~~~l~ 98 (103)
T 3ge3_E 47 AYVRIAAE----GELILTRKTLEEQLGRPFNMQ-ELEINLASFAGQIQADEDQIRFY 98 (103)
T ss_dssp SEEEEEEE----SEEEEEHHHHHHHHTSCCCGG-GGGGTEEEEESEEEECSSEEEEE
T ss_pred CEEEEecC----CeEEEEHHHHHHHhCCCCcHH-HhhhhhheeeeEEEeeCCEEEEE
Confidence 45677877 346679999999999995432 33333334566777777777764
No 93
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=20.64 E-value=18 Score=31.27 Aligned_cols=31 Identities=32% Similarity=0.695 Sum_probs=23.9
Q ss_pred ccCCCCCCCCceEEEeccCCeEeeecccccCcc
Q psy15553 98 VLCPECDNPETDLVVSAKKGTIQQVCKACGFHG 130 (489)
Q Consensus 98 VlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~ 130 (489)
..|..|+..+|.+-+....+ ..-|.|||-..
T Consensus 60 ~~C~~C~t~~tp~WRr~~~g--~~lCNaCgl~~ 90 (115)
T 4hc9_A 60 TSCANCQTTTTTLWRRNANG--DPVCNACGLYY 90 (115)
T ss_dssp CCCTTTCCSCCSSCEECTTS--CEECHHHHHHH
T ss_pred ccCCCcCCCCcceeEECCCC--CCcchHHHHHH
Confidence 68999999999988743334 46699999654
No 94
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=20.39 E-value=17 Score=31.45 Aligned_cols=50 Identities=18% Similarity=0.385 Sum_probs=29.1
Q ss_pred hcccCCCCCCCCceEEEeccCCeEeeecccccCc----ccccchhhhhhhhhcCCC
Q psy15553 96 KFVLCPECDNPETDLVVSAKKGTIQQVCKACGFH----GMLQFNHKLNTFILKNPP 147 (489)
Q Consensus 96 ~yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~----~~v~~~~kl~~~i~kn~p 147 (489)
.|..|-.|+++...-.- .+..-...|.+|-.. +.+...+=..+|.|+.+-
T Consensus 4 ~~~~C~eC~~~~~d~~l--~~~F~~~VC~~Cr~~~~~~~liTkt~ak~dYlL~d~d 57 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYL--MDHFDLPTCDDCRDADDKHKLITKTEAKQEYLLKDCD 57 (111)
T ss_dssp CCEECTTTCCEESCSSS--TTTTSCCCCTTTCSSSSSCCCEEHHHHTTTTTCCSSS
T ss_pred CCCccccCCChhhHHHH--HHhCCeeechhhcccccccccccHHHHHHHHcCCchh
Confidence 46789999988532221 233336778888643 233333444568886654
No 95
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=20.33 E-value=18 Score=31.20 Aligned_cols=30 Identities=33% Similarity=0.638 Sum_probs=23.1
Q ss_pred ccCCCCCCCCceEEEeccCCeEeeecccccCc
Q psy15553 98 VLCPECDNPETDLVVSAKKGTIQQVCKACGFH 129 (489)
Q Consensus 98 VlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~ 129 (489)
-.|..|+..+|-+-+. +..-..-|.|||-.
T Consensus 6 ~~C~~Cg~~~Tp~WRr--~~~g~~lCnaCgl~ 35 (115)
T 4hc9_A 6 RECVNCGATSTPLWRR--DGTGHYLCNACGLY 35 (115)
T ss_dssp CCCTTTCCSCCSSCEE--CTTSCEECHHHHHH
T ss_pred CCCCCCCCccCCcceE--CCCCCCcCcchhhh
Confidence 4699999999998883 33335799999963
No 96
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=20.14 E-value=36 Score=25.39 Aligned_cols=38 Identities=24% Similarity=0.470 Sum_probs=24.7
Q ss_pred cccCCCCCCCCceEEEeccCCeEeeecccccCcccccch--hhhhhhhh
Q psy15553 97 FVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQFN--HKLNTFIL 143 (489)
Q Consensus 97 yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~~v~~~--~kl~~~i~ 143 (489)
-..|+.|+.- +..+...|..|+-.+.+..+ -.|..||-
T Consensus 9 ~~~C~~C~Gs---------G~~i~~~C~~C~G~G~v~~~~G~~~~~~~~ 48 (53)
T 3lcz_A 9 ETTCPNCNGS---------GREEPEPCPKCLGKGVILTAQGSTLLHFIK 48 (53)
T ss_dssp EEECTTTTTS---------CEETTEECTTTTTSSEEECHHHHHHHHHHH
T ss_pred eccCcCCccc---------ccCCCCcCCCCCCcEEEEEEeCchHHHHHH
Confidence 3579999753 33334789999999887544 34455554
Done!