RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15553
         (489 letters)



>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta,
          aIF2beta, N-terminal domain {Archaeon Methanobacterium
          thermoautotrophicum [TaxId: 145262]}
          Length = 98

 Score = 89.8 bits (223), Expect = 1e-22
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 11 TDAFYRYKMPKLIAKVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGCELGAQTKLDH 70
               R+++PK  + ++G     +T I N  +VA A+ R P +  K+   ELG    L+ 
Sbjct: 19 VFETKRFEVPKAYSVIQGN----RTFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE- 73

Query: 71 KNDRFIVNGSHDVVKLQDLLDGFIRK 96
             R I+ G      + + ++ ++ K
Sbjct: 74 -GGRAILQGKFTHFLINERIEDYVNK 98


>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta,
          aIF2beta, N-terminal domain {Archaeon Methanococcus
          jannaschii [TaxId: 2190]}
          Length = 52

 Score = 67.3 bits (165), Expect = 4e-15
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 25 KVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGCELGAQTKLDHKNDRFIVNG 79
           +EG     +T+I N  ++AKA+ R   +  KY   E G+   L+    R I+  
Sbjct: 3  LIEGN----RTIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLE--GGRLILQR 51


>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b
           epsilon {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 161

 Score = 64.5 bits (157), Expect = 5e-13
 Identities = 17/95 (17%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 334 LLDKQSTVL-RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVL 392
           + ++   +  R   ++ +    +   +E+++    +K   ++   L   YD DI+EE V+
Sbjct: 71  VFNQWGLLFKRQAFDEEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVI 130

Query: 393 LEWAEKTSKKYVSKELSAEIRSRAEPFIKWLREAE 427
            +W +  S    +     E++     +++WL+ A+
Sbjct: 131 YKWWDNVS----TDPRYDEVKKLTVKWVEWLQNAD 161


>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 127

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 11/62 (17%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 334 LLDKQSTVLRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLL 393
           +L  ++ +L+    D + +   L  + Q + +  E+  +++       YD D+++E    
Sbjct: 67  VLKARAKLLQKYLCDEQKELQALYAL-QALVVTLEQPPNLLRMFFDALYDEDVVKEDAFY 125

Query: 394 EW 395
            W
Sbjct: 126 SW 127


>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation
           initiation factor 2 beta {Archaeon Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 37

 Score = 35.0 bits (81), Expect = 6e-04
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 97  FVLCPECDNPETDLVVSAKKGTIQQVCKACG 127
           FV+C EC+ P+T ++   +       C+ACG
Sbjct: 1   FVICHECNRPDTRII--REGRISLLKCEACG 29


>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation
           factor 2 beta {Archaeon Methanococcus jannaschii [TaxId:
           2190]}
          Length = 36

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 98  VLCPECDNPETDLVVSAKKGTIQQVCKACG 127
           V+C EC  P+T ++   +       C ACG
Sbjct: 1   VICRECGKPDTKII--KEGRVHLLKCMACG 28


>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium
           butyricum [TaxId: 1492]}
          Length = 786

 Score = 28.7 bits (64), Expect = 1.8
 Identities = 15/68 (22%), Positives = 20/68 (29%), Gaps = 7/68 (10%)

Query: 224 GVKGL--TISEDLEKTEKERMDI-----FYTCVKTALEKNNVDAKELLSEAERLEVKTKA 276
           G  G+     E LEK      D      F   V  + E           +A+ +   T  
Sbjct: 175 GFNGIINEAKEQLEKNRSIDPDFIKKEKFLNSVIISCEAAITYVNRYAKKAKEIADNTSD 234

Query: 277 PLILAELL 284
               AEL 
Sbjct: 235 AKRKAELN 242


>d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus
           subtilis [TaxId: 1423]}
          Length = 377

 Score = 27.3 bits (59), Expect = 4.9
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 324 ATLINQCQLILLDKQSTVLRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYD 383
            +   Q +   L K   VLR T E       +  G  ++    +E +  +   +L    +
Sbjct: 282 DSGGVQEEAPSLGKPVLVLRDTTER---PEGVEAGTLKLAGTDEENIYQLAKQLLTDPDE 338

Query: 384 YDILEEKVLLEWAEKTSKKYV 404
           Y  + +        + S++ V
Sbjct: 339 YKKMSQASNPYGDGEASRRIV 359


>d1nbwa2 c.55.1.6 (A:2-91,A:257-405) ATPase domain of the glycerol
          dehydratase reactivase alpha subunit {Klebsiella
          pneumoniae [TaxId: 573]}
          Length = 239

 Score = 25.9 bits (57), Expect = 9.8
 Identities = 6/28 (21%), Positives = 10/28 (35%)

Query: 20 PKLIAKVEGKGNGIKTVIVNMADVAKAI 47
             +A       G+K    N+A    A+
Sbjct: 25 RAFVASGIVATTGMKGTRDNIAGTLAAL 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0664    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,801,328
Number of extensions: 87696
Number of successful extensions: 227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 16
Length of query: 489
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 400
Effective length of database: 1,185,626
Effective search space: 474250400
Effective search space used: 474250400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.1 bits)