Query psy15554
Match_columns 339
No_of_seqs 247 out of 2185
Neff 8.1
Searched_HMMs 46136
Date Sat Aug 17 00:15:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15554.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15554hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3713|consensus 100.0 1.7E-44 3.6E-49 343.1 16.0 257 13-287 172-438 (477)
2 KOG1545|consensus 100.0 1.7E-39 3.7E-44 295.9 10.5 238 17-259 175-431 (507)
3 KOG4390|consensus 100.0 1.1E-32 2.4E-37 253.5 -1.2 232 15-265 167-400 (632)
4 KOG3713|consensus 99.9 1.7E-28 3.6E-33 234.0 7.8 143 189-336 242-392 (477)
5 KOG1545|consensus 99.9 1.7E-27 3.7E-32 217.5 8.3 143 189-336 255-408 (507)
6 KOG1419|consensus 99.9 2.4E-23 5.2E-28 199.4 5.0 246 3-281 63-324 (654)
7 KOG4390|consensus 99.9 1.4E-24 3.1E-29 200.2 -3.5 138 194-336 234-371 (632)
8 KOG2302|consensus 99.7 3.5E-18 7.7E-23 171.9 6.5 151 29-204 1120-1278(1956)
9 KOG1419|consensus 99.6 5.1E-15 1.1E-19 142.6 11.9 148 187-336 125-284 (654)
10 KOG2301|consensus 99.5 3.6E-13 7.9E-18 146.6 17.3 147 29-202 836-982 (1592)
11 PLN03192 Voltage-dependent pot 99.4 4.7E-13 1E-17 141.7 9.3 212 21-265 51-294 (823)
12 PF00520 Ion_trans: Ion transp 99.3 2.6E-12 5.7E-17 111.6 6.5 150 93-242 1-168 (200)
13 KOG1420|consensus 99.3 1.6E-12 3.4E-17 126.0 5.2 175 87-276 160-341 (1103)
14 KOG2301|consensus 99.2 3.6E-11 7.8E-16 131.3 9.5 174 32-232 1156-1336(1592)
15 KOG2302|consensus 99.1 7.9E-11 1.7E-15 119.8 4.6 145 32-203 1440-1590(1956)
16 KOG0498|consensus 98.7 2.9E-08 6.4E-13 101.6 8.9 195 86-285 114-356 (727)
17 KOG0501|consensus 98.4 8.2E-07 1.8E-11 87.1 9.4 160 89-255 249-459 (971)
18 PF00520 Ion_trans: Ion transp 98.3 2.5E-07 5.5E-12 80.0 2.2 141 194-336 4-160 (200)
19 PLN03223 Polycystin cation cha 97.6 0.0004 8.6E-09 74.6 10.4 72 156-231 1300-1371(1634)
20 KOG0500|consensus 97.5 0.00026 5.6E-09 68.8 7.6 190 87-287 27-246 (536)
21 PF08016 PKD_channel: Polycyst 97.2 0.0019 4.1E-08 63.7 9.7 124 99-228 221-373 (425)
22 PRK10537 voltage-gated potassi 97.2 0.0013 2.8E-08 64.0 8.2 101 151-263 107-210 (393)
23 KOG3599|consensus 97.1 0.0027 5.8E-08 66.8 9.8 150 94-252 471-652 (798)
24 PF07885 Ion_trans_2: Ion chan 97.1 0.00033 7.1E-09 52.2 2.2 62 194-263 3-66 (79)
25 PLN03192 Voltage-dependent pot 96.9 0.00034 7.5E-09 74.6 1.0 50 286-336 202-265 (823)
26 PRK10537 voltage-gated potassi 96.1 0.0073 1.6E-07 58.9 4.6 76 251-336 107-183 (393)
27 PLN03223 Polycystin cation cha 96.0 0.014 3E-07 63.3 6.5 73 250-326 1294-1366(1634)
28 PF08016 PKD_channel: Polycyst 95.4 0.04 8.7E-07 54.3 6.9 73 250-326 299-371 (425)
29 KOG0499|consensus 94.5 0.53 1.1E-05 47.5 11.8 143 88-243 260-426 (815)
30 KOG1023|consensus 93.6 0.026 5.6E-07 56.2 0.9 74 1-78 319-405 (484)
31 KOG4404|consensus 93.6 0.23 5E-06 46.4 6.8 103 222-336 81-201 (350)
32 KOG1420|consensus 93.5 0.16 3.4E-06 50.8 6.0 122 204-336 177-303 (1103)
33 KOG4171|consensus 92.8 0.047 1E-06 55.7 1.2 32 1-32 465-496 (671)
34 KOG1418|consensus 91.3 0.18 3.9E-06 48.8 3.4 33 220-254 114-148 (433)
35 KOG0498|consensus 90.3 0.17 3.8E-06 52.7 2.4 114 224-337 165-310 (727)
36 TIGR00870 trp transient-recept 90.2 2.2 4.7E-05 45.2 10.5 116 92-208 392-530 (743)
37 KOG3599|consensus 88.1 0.62 1.3E-05 49.4 4.5 78 252-330 558-636 (798)
38 PF07885 Ion_trans_2: Ion chan 87.2 0.2 4.3E-06 37.0 0.2 38 293-336 2-39 (79)
39 KOG3193|consensus 86.2 4.4 9.5E-05 40.7 8.8 50 206-257 204-255 (1087)
40 KOG3684|consensus 69.8 5.3 0.00011 39.3 3.7 56 191-248 259-316 (489)
41 KOG3614|consensus 56.4 56 0.0012 36.6 8.7 43 100-142 833-881 (1381)
42 KOG3609|consensus 56.2 61 0.0013 34.5 8.7 90 92-182 384-504 (822)
43 KOG0500|consensus 46.8 80 0.0017 31.7 7.4 44 218-265 70-114 (536)
44 KOG0510|consensus 44.1 31 0.00066 36.6 4.3 133 91-230 565-701 (929)
45 TIGR00870 trp transient-recept 42.9 24 0.00052 37.3 3.6 58 250-307 471-529 (743)
46 KOG1418|consensus 31.8 24 0.00051 33.9 1.3 28 220-247 241-270 (433)
47 KOG4404|consensus 29.6 63 0.0014 30.6 3.5 22 222-243 187-210 (350)
48 PF08196 UL2: UL2 protein; In 29.1 24 0.00052 23.8 0.5 22 302-325 6-27 (60)
49 PF02101 Ocular_alb: Ocular al 24.1 2.2E+02 0.0048 27.8 6.2 77 234-310 197-273 (405)
No 1
>KOG3713|consensus
Probab=100.00 E-value=1.7e-44 Score=343.08 Aligned_cols=257 Identities=33% Similarity=0.612 Sum_probs=230.7
Q ss_pred HHhhccccceeeccccchhhhHhhHhHHHHHhhhheeeEEecccCCccccccCccccccCCCCcccccccccCCCCchhh
Q psy15554 13 DRIIKGYDVYKVETIGDAYMVILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSSFFISLDNSTAWVLHKEKTDPHAAFF 92 (339)
Q Consensus 13 ~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~I~ls~i~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 92 (339)
-+.+++.+.++|+|+||.+||+|+..+.++|++|++.+|++|+|++|.++.++..... +.++...+.++.+.
T Consensus 172 ~~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~--------~~~~~~~~~~p~l~ 243 (477)
T KOG3713|consen 172 GRLRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLV--------NVEKIESEPHPILT 243 (477)
T ss_pred hhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccc--------cccccCCCCCCchH
Confidence 3577788889999999999999999999999999999999999999987654221111 22444667788899
Q ss_pred hhhhHHHHHHHHHHHHhhhccCcchhhccccccchhhhhhhHHHHHHHHcc--------ccccchhHHHHHhhhhhhccc
Q psy15554 93 YVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQD--------KVQQSDILEFFSIIRILRLFK 164 (339)
Q Consensus 93 ~ie~~~~~iF~~E~~lrl~~a~~~~~y~~~~~niiDl~~ilp~~v~~~~~~--------~~~~~~~lr~lRllRllRilr 164 (339)
++|.+|.++||+||++|+..+|+|.+|++++.|+||+++++|+|+++.+.. ..++...+|++|++|++|++|
T Consensus 244 ~vE~vCi~WFT~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~K 323 (477)
T KOG3713|consen 244 YVETVCIAWFTFEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFK 323 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999977763 133447899999999999999
Q ss_pred ccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEeccc--chhhhhc
Q psy15554 165 LTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSF--YTDILLQ 242 (339)
Q Consensus 165 l~r~~~~l~~l~~tl~~s~~~l~~l~~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tltt--Ygdi~p~ 242 (339)
|.|++.|+|.++.|++++.++++.+++++.+++.+||..+||+|+ ..|++ .|.++|.++||+++|||| |||++|.
T Consensus 324 LaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek--~~~~~-~FtSIPa~~WWaiVTMTTVGYGDm~P~ 400 (477)
T KOG3713|consen 324 LARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEK--DEPDT-KFTSIPAGFWWAVVTMTTVGYGDMVPV 400 (477)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCC-CCccccchhheeeEEEeeecccCcccc
Confidence 999999999999999999999999999999999999999999999 66766 699999999999999999 9999999
Q ss_pred ccccchhhhhHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHH
Q psy15554 243 DKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELT 287 (339)
Q Consensus 243 t~~g~~~~l~~lrilri~ri~kL~r~~~~l~~L~~~~~~~~~~l~ 287 (339)
|..|+ ++...+++.+.-++.| ++.++.+.+.+..++..
T Consensus 401 T~~Gk--lvas~cil~GVLvlAl-----PItiIv~nF~~~y~~~k 438 (477)
T KOG3713|consen 401 TVLGK--LVASLCILCGVLVLAL-----PITIIVNNFSMYYSELK 438 (477)
T ss_pred ccchH--HHHHHHHHHhHHHhhc-----chHhHhhhHHHHHHHHH
Confidence 99998 9999999999999999 99999999988887754
No 2
>KOG1545|consensus
Probab=100.00 E-value=1.7e-39 Score=295.86 Aligned_cols=238 Identities=32% Similarity=0.486 Sum_probs=199.4
Q ss_pred ccccceeeccccchhhhHhhHhHHHHHhhhheeeEEecccCCccccccCcc--ccccCC--CCcc--cccccccCCCCch
Q psy15554 17 KGYDVYKVETIGDAYMVILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSS--FFISLD--NSTA--WVLHKEKTDPHAA 90 (339)
Q Consensus 17 ~~~~~~~~~~~~s~~~~~~~~~i~~~I~ls~i~~~l~t~~~~~~~~~~~~~--~~~~~~--~~~~--~~~~~~~~~~~~~ 90 (339)
+..+.++|.|.||..|+.++.+++++|++|++.+|+||+|+++++...+.. .+.+++ +.+. .-....+....+.
T Consensus 175 RqvWlLfEYPeSS~~AR~iAiVSVlVIliSIviFClETlPefrderd~~~~~~~~~~~~~~n~~~~~~~~~~~~~~f~dP 254 (507)
T KOG1545|consen 175 RQVWLLFEYPESSGPARIIAIVSVLVILISIVIFCLETLPEFRDERDLTGHFPAGTGGGVMNPTSGPELLDLGDTKFTDP 254 (507)
T ss_pred hhhhheeecccccCCeeeeeehhHHHHHHHHHHHHHHhCchhhhhccccccccccCCCcccCCCCCcccccccccccCCc
Confidence 345789999999999999999999999999999999999999876222111 111111 1110 0001123446777
Q ss_pred hhhhhhHHHHHHHHHHHHhhhccCcchhhccccccchhhhhhhHHHHHHHHcc------c-----cccchhHHHHHhhhh
Q psy15554 91 FFYVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQD------K-----VQQSDILEFFSIIRI 159 (339)
Q Consensus 91 l~~ie~~~~~iF~~E~~lrl~~a~~~~~y~~~~~niiDl~~ilp~~v~~~~~~------~-----~~~~~~lr~lRllRl 159 (339)
+.++|..|.+||++|.++|+++||+|..|+++.+|++|+++++|+++.+.... + ...+.++|++|++|+
T Consensus 255 FFiVEt~CIiWFtfEllvRf~aCPsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRViRLVRV 334 (507)
T KOG1545|consen 255 FFIVETLCIIWFTFELLVRFFACPSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVIRLVRV 334 (507)
T ss_pred hHhHHHHHHHHHhHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999887653 1 123578999999999
Q ss_pred hhcccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEeccc--ch
Q psy15554 160 LRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSF--YT 237 (339)
Q Consensus 160 lRilrl~r~~~~l~~l~~tl~~s~~~l~~l~~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tltt--Yg 237 (339)
+|++||.|+++++|.+++++++++++++.++++++++++.|+..+|++|. ..|+. +|.++|+++||+++|||| ||
T Consensus 335 FRIFKLSRHSkGLQILGqTl~aSmrElgLLIFFlfIgviLFsSavYFAEa--de~~S-~F~SIPdaFWwavVTMTTVGYG 411 (507)
T KOG1545|consen 335 FRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVILFSSAVYFAEA--DEPES-HFSSIPDAFWWAVVTMTTVGYG 411 (507)
T ss_pred hhheeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeeeec--CCCcc-CCCcCcccceEEEEEEEeeccc
Confidence 99999999999999999999999999999999999999999999999998 77777 899999999999999999 99
Q ss_pred hhhhcccccchhhhhHHHHHHH
Q psy15554 238 DILLQDKVQQSDILEFFSIIRI 259 (339)
Q Consensus 238 di~p~t~~g~~~~l~~lrilri 259 (339)
|++|.|..|+ ++..+|.+-+
T Consensus 412 Dm~P~TvgGK--IVGslCAiaG 431 (507)
T KOG1545|consen 412 DMVPVTVGGK--IVGSLCAIAG 431 (507)
T ss_pred cceecccCce--ehhhHHhhhh
Confidence 9999999988 6666665443
No 3
>KOG4390|consensus
Probab=99.97 E-value=1.1e-32 Score=253.46 Aligned_cols=232 Identities=28% Similarity=0.457 Sum_probs=199.4
Q ss_pred hhccccceeeccccchhhhHhhHhHHHHHhhhheeeEEecccCCccccccCccccccCCCCcccccccccCCCCchhhhh
Q psy15554 15 IIKGYDVYKVETIGDAYMVILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSSFFISLDNSTAWVLHKEKTDPHAAFFYV 94 (339)
Q Consensus 15 ~~~~~~~~~~~~~~s~~~~~~~~~i~~~I~ls~i~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 94 (339)
.+++.+--.|+|+.|..+-+|-++..++|.+|+++.++||.|-=..+- +....+| ...+...+..+
T Consensus 167 ~rq~mWrAFENPHTst~ALVFYYVtGFFIAVSVi~NvVETiPCg~~~~--------~~~e~pC------GEry~~aFFcl 232 (632)
T KOG4390|consen 167 LRQRMWRAFENPHTSTAALVFYYVTGFFIAVSVIANVVETIPCGGSPG--------RSKELPC------GERYPVAFFCL 232 (632)
T ss_pred HHHHHHHHhcCCCcchhhhhhhhhhhhhhhhhhhhceeeecccCCCCC--------Cceeccc------ccccceeeEEe
Confidence 344555566899999999999999999999999999999977321110 0001111 23356678899
Q ss_pred hhHHHHHHHHHHHHhhhccCcchhhccccccchhhhhhhHHHHHHHHccccccchhHHHHHhhhhhhcccccccCcchhH
Q psy15554 95 ELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKI 174 (339)
Q Consensus 95 e~~~~~iF~~E~~lrl~~a~~~~~y~~~~~niiDl~~ilp~~v~~~~~~~~~~~~~lr~lRllRllRilrl~r~~~~l~~ 174 (339)
|..|..+|+.||++|+++||+|.+|+++.++++|.++++|+|+.+++.++......+-.+|++|++|++|..|+..++|.
T Consensus 233 DTACVmIFT~EYlLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVSGaFVTLRVFRVFRIFKFSRHSQGLRI 312 (632)
T KOG4390|consen 233 DTACVMIFTGEYLLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDNEDVSGAFVTLRVFRVFRIFKFSRHSQGLRI 312 (632)
T ss_pred cceeEEEeeHHHHHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCCccccceeEEEEeeeeeeeeeecccccccch
Confidence 99999999999999999999999999999999999999999999988765555667778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEeccc--chhhhhcccccchhhhh
Q psy15554 175 LIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSF--YTDILLQDKVQQSDILE 252 (339)
Q Consensus 175 l~~tl~~s~~~l~~l~~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tltt--Ygdi~p~t~~g~~~~l~ 252 (339)
++.+++.+..+++.+++-+...+++|+..+||.|. +.... +|.++|.++|+.++|||| |||++|.|..|+ ++.
T Consensus 313 LGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEK--g~~at-~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGK--IfG 387 (632)
T KOG4390|consen 313 LGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEK--GSSAT-KFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGK--IFG 387 (632)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhc--ccccc-ccccCcHhHhhheeeeeeccccccchHHHHHH--Hhh
Confidence 99999999999999999999999999999999998 44444 899999999999999999 999999999998 888
Q ss_pred HHHHHHHhhhccc
Q psy15554 253 FFSIIRILRLFKL 265 (339)
Q Consensus 253 ~lrilri~ri~kL 265 (339)
.++-+.+.-+..|
T Consensus 388 siCSLSGVLVIAL 400 (632)
T KOG4390|consen 388 SICSLSGVLVIAL 400 (632)
T ss_pred hhhcccceEEEec
Confidence 8888887777665
No 4
>KOG3713|consensus
Probab=99.95 E-value=1.7e-28 Score=233.97 Aligned_cols=143 Identities=35% Similarity=0.643 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEecccchhhhhccccc--------chhhhhHHHHHHHh
Q psy15554 189 LVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQ--------QSDILEFFSIIRIL 260 (339)
Q Consensus 189 l~~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tlttYgdi~p~t~~g--------~~~~l~~lrilri~ 260 (339)
+.....+|+.+|+.+ |..|+..+|++.+|.+.|.|++|+++++|+|.++......+ .+.++|++|++|++
T Consensus 242 l~~vE~vCi~WFT~E--~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~ 319 (477)
T KOG3713|consen 242 LTYVETVCIAWFTFE--YLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRIL 319 (477)
T ss_pred hHHHHHHHHHHHHHH--HHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHH
Confidence 456778999999999 99999999999999999999999999999998877653332 13689999999999
Q ss_pred hhcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeccCCCCccCCCCCCcccchheeeeeeecc
Q psy15554 261 RLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSF 336 (339)
Q Consensus 261 ri~kL~r~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~~~s~~~y~~E~~~~~~~~~~f~s~~~~~ww~~~t~~~~ 336 (339)
|++||+|||.|+|+|+.|+++|.+|++++++++++++++||+++|++|++.... +|.|||.++||+.||||..
T Consensus 320 RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~~~---~FtSIPa~~WWaiVTMTTV 392 (477)
T KOG3713|consen 320 RIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDEPDT---KFTSIPAGFWWAVVTMTTV 392 (477)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC---CCccccchhheeeEEEeee
Confidence 999999999999999999999999999999999999999999999999985443 4999999999999999974
No 5
>KOG1545|consensus
Probab=99.94 E-value=1.7e-27 Score=217.53 Aligned_cols=143 Identities=33% Similarity=0.584 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEecccch----hhhhccccc---c----hhhhhHHHHH
Q psy15554 189 LVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSFYT----DILLQDKVQ---Q----SDILEFFSII 257 (339)
Q Consensus 189 l~~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tlttYg----di~p~t~~g---~----~~~l~~lril 257 (339)
.++....|+++|+.+ +..|+..||.+..|.+..+|++|.++++|++. +..-+...| + ..++|++|++
T Consensus 255 FFiVEt~CIiWFtfE--llvRf~aCPsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRViRLV 332 (507)
T KOG1545|consen 255 FFIVETLCIIWFTFE--LLVRFFACPSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVIRLV 332 (507)
T ss_pred hHhHHHHHHHHHhHH--HHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHHHHH
Confidence 445667999999999 79999999999999999999999999999832 233232111 1 4688999999
Q ss_pred HHhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeccCCCCccCCCCCCcccchheeeeeeecc
Q psy15554 258 RILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSF 336 (339)
Q Consensus 258 ri~ri~kL~r~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~~~s~~~y~~E~~~~~~~~~~f~s~~~~~ww~~~t~~~~ 336 (339)
|+||+|||+|||+++++|+++++++.+||+.+++++++++++||+.+|++|.+++.. .|+|||+|+||+.||||..
T Consensus 333 RVFRIFKLSRHSkGLQILGqTl~aSmrElgLLIFFlfIgviLFsSavYFAEade~~S---~F~SIPdaFWwavVTMTTV 408 (507)
T KOG1545|consen 333 RVFRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVILFSSAVYFAEADEPES---HFSSIPDAFWWAVVTMTTV 408 (507)
T ss_pred HHhhheeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeeeecCCCcc---CCCcCcccceEEEEEEEee
Confidence 999999999999999999999999999999999999999999999999999874433 6999999999999999974
No 6
>KOG1419|consensus
Probab=99.88 E-value=2.4e-23 Score=199.45 Aligned_cols=246 Identities=20% Similarity=0.205 Sum_probs=195.8
Q ss_pred ccchHHHHh--HHHhhccccceeeccccchhhhHhhHhHHHHHhhhheeeEEecccCCccccccCccccccCCCCccccc
Q psy15554 3 NFLNDLYTL--FDRIIKGYDVYKVETIGDAYMVILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSSFFISLDNSTAWVL 80 (339)
Q Consensus 3 ~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~I~ls~i~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (339)
|+=|..|++ +.|+.-.....+|+| ..+.+..++.++.++++.+.+..++.|.+|+.
T Consensus 63 ~~~~~~~Rn~r~Rr~q~~vYN~LERP-rGWkaf~YH~~VFllVl~CLILsV~STi~e~~--------------------- 120 (654)
T KOG1419|consen 63 NLGKMRQRNARYRRIQNKVYNFLERP-RGWKAFLYHFFVFLLVLSCLILSVLSTIEEYE--------------------- 120 (654)
T ss_pred CccccchhhHHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHHHHHHHHhcccHHHH---------------------
Confidence 344555666 777766666677888 55667788888888888888888889966652
Q ss_pred ccccCCCCchhhhhhhHHHHHHHHHHHHhhhccCc---------chhhccccccchhhhhhhHHHHHHHHcc--ccccch
Q psy15554 81 HKEKTDPHAAFFYVELACNAWFTFELLVRAVVSPN---------IFQFIRSPVNVIDIIATLSFYTDILLQD--KVQQSD 149 (339)
Q Consensus 81 ~~~~~~~~~~l~~ie~~~~~iF~~E~~lrl~~a~~---------~~~y~~~~~niiDl~~ilp~~v~~~~~~--~~~~~~ 149 (339)
.....++.++|++..++|.+||++|+|+|+. |.+|.++++.+||+++++.+...+..+. +..+..
T Consensus 121 ----~~a~~~L~~LEiv~IV~Fg~EfivRlWSAGC~~rYrG~~GRLrFarkp~cvIDiivi~Asi~vl~~g~qG~vfatS 196 (654)
T KOG1419|consen 121 ----KLASGILYILEIVMIVFFGLEFIVRLWSAGCCCRYRGWYGRLRFARKPFCVIDIIVIIASIAVLAAGSQGNVFATS 196 (654)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceeeEEeecCCceEEEEeeeeeeeeEEEecCccceeehh
Confidence 2245678999999999999999999999885 6889999999999998888766665553 222345
Q ss_pred hHHHHHhhhhhhcccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCCCcceeecCccceee
Q psy15554 150 ILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERL-QVSPNIFQFIRSPVNVID 228 (339)
Q Consensus 150 ~lr~lRllRllRilrl~r~~~~l~~l~~tl~~s~~~l~~l~~~~~i~v~iFa~~iy~~er~-~~~~~~~~f~~~~~al~~ 228 (339)
.+|-+|.+.++|++|+-|....++.|+.++....+++....++-+++.+..+.++|..|.. .+...+..|.++.+++||
T Consensus 197 alrslRFlQILRmlr~DRrggTWKLLGSvV~aH~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWW 276 (654)
T KOG1419|consen 197 ALRSLRFLQILRMLRMDRRGGTWKLLGSVVYAHSKELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWW 276 (654)
T ss_pred hhhhhHHHHHHHHHHhhccCchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHh
Confidence 6899999999999999999999999999999999999999999999999999999999983 122234579999999999
Q ss_pred eEEeccc--chhhhhcccccchhhhhHHHHHHHhhhcccccCchHHHHHHHHHHH
Q psy15554 229 IIATLSF--YTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKA 281 (339)
Q Consensus 229 ~i~tltt--Ygdi~p~t~~g~~~~l~~lrilri~ri~kL~r~~~~l~~L~~~~~~ 281 (339)
.++|++| |||.+|+|..|| ++....-+-.+-.|.| +..+|+..+.-
T Consensus 277 G~ITltTIGYGDk~P~TWlGr--~laa~fsligiSFFAL-----PAGILGSGfAL 324 (654)
T KOG1419|consen 277 GVITLTTIGYGDKTPQTWLGR--LLAACFSLIGISFFAL-----PAGILGSGFAL 324 (654)
T ss_pred hheeEEeeccCCcCcccchhH--HHHHHHHHHHHHHHhc-----ccccccchhhh
Confidence 9999999 999999999998 5555555555555655 55566655543
No 7
>KOG4390|consensus
Probab=99.88 E-value=1.4e-24 Score=200.17 Aligned_cols=138 Identities=31% Similarity=0.648 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEecccchhhhhcccccchhhhhHHHHHHHhhhcccccCchHHH
Q psy15554 194 VLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLK 273 (339)
Q Consensus 194 ~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tlttYgdi~p~t~~g~~~~l~~lrilri~ri~kL~r~~~~l~ 273 (339)
..|+.+|.++ |..|+..+|++.+|.++.++++|++++||+|...+...+..-...+-.+|++|+||+||.+||++++|
T Consensus 234 TACVmIFT~E--YlLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVSGaFVTLRVFRVFRIFKFSRHSQGLR 311 (632)
T KOG4390|consen 234 TACVMIFTGE--YLLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDNEDVSGAFVTLRVFRVFRIFKFSRHSQGLR 311 (632)
T ss_pred ceeEEEeeHH--HHHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCCccccceeEEEEeeeeeeeeeecccccccc
Confidence 4788899999 99999999999999999999999999999988877765444444677789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeccCCCCccCCCCCCcccchheeeeeeecc
Q psy15554 274 ILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSF 336 (339)
Q Consensus 274 ~L~~~~~~~~~~l~~~~~~~~~~~~~~s~~~y~~E~~~~~~~~~~f~s~~~~~ww~~~t~~~~ 336 (339)
+|+.++++|..||+.+++-+.+.+++|+++|||+|++....+ |+|||.|+||++||||..
T Consensus 312 ILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEKg~~at~---FTsIPaaFWYTIVTmTTL 371 (632)
T KOG4390|consen 312 ILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGSSATK---FTSIPAAFWYTIVTMTTL 371 (632)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccccc---cccCcHhHhhheeeeeec
Confidence 999999999999999999999999999999999999977665 999999999999999964
No 8
>KOG2302|consensus
Probab=99.73 E-value=3.5e-18 Score=171.89 Aligned_cols=151 Identities=22% Similarity=0.341 Sum_probs=126.3
Q ss_pred chhhhHhhHhHHHHHhhhheeeEEecccCCccccccCccccccCCCCcccccccccCCCCchhhhhh-hHHHHHHHHHHH
Q psy15554 29 DAYMVILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSSFFISLDNSTAWVLHKEKTDPHAAFFYVE-LACNAWFTFELL 107 (339)
Q Consensus 29 s~~~~~~~~~i~~~I~ls~i~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie-~~~~~iF~~E~~ 107 (339)
-...+.|+.++.++|++|++..++|+..+. ....+..+..++ .+|+.+|.+|+.
T Consensus 1120 ii~hk~Fd~vVl~~IfLNcVtialerp~i~-------------------------~~s~EriFltlsnyIFtaIfV~Em~ 1174 (1956)
T KOG2302|consen 1120 IIQHKAFDTVVLFFIFLNCVTIALERPAIV-------------------------EGSTERIFLTLSNYIFTAIFVVEMT 1174 (1956)
T ss_pred HHHHhhhhheehhhhhhhhHHHHhcccccc-------------------------cCcceEEEEEecchHHHHHHHHHHH
Confidence 345788999999999999999999993221 122333444444 999999999999
Q ss_pred HhhhccC---cchhhccccccchhhhhhhHHHHHHHHcc----ccccchhHHHHHhhhhhhcccccccCcchhHHHHHHH
Q psy15554 108 VRAVVSP---NIFQFIRSPVNVIDIIATLSFYTDILLQD----KVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFK 180 (339)
Q Consensus 108 lrl~~a~---~~~~y~~~~~niiDl~~ilp~~v~~~~~~----~~~~~~~lr~lRllRllRilrl~r~~~~l~~l~~tl~ 180 (339)
+|..+-+ ....|+++.||.+|.+.+.-+.+++.+.+ ..+.+..+|++|++|.+|.+|.+...+++|....++.
T Consensus 1175 lKVVALGl~fge~aYl~ssWN~LDgflv~vsviDilvs~asa~g~kILgVlrvLRlLRtlRpLRviSra~glklVveTL~ 1254 (1956)
T KOG2302|consen 1175 LKVVALGLYFGEQAYLRSSWNVLDGFLVAVSVIDILVSQASAGGAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLI 1254 (1956)
T ss_pred HHHHhhhhccchHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHhhcccHHHHHHHHH
Confidence 9999754 46899999999999999888888887776 3455678899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15554 181 ASAKELTLLVFFLVLGIVVFASLV 204 (339)
Q Consensus 181 ~s~~~l~~l~~~~~i~v~iFa~~i 204 (339)
.+.+.+++++++++.+.++|++..
T Consensus 1255 sSLkpIgnIvliccaffiiFgilg 1278 (1956)
T KOG2302|consen 1255 SSLKPIGNIVLICCAFFIIFGILG 1278 (1956)
T ss_pred hccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998753
No 9
>KOG1419|consensus
Probab=99.60 E-value=5.1e-15 Score=142.62 Aligned_cols=148 Identities=24% Similarity=0.315 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCC---------CcceeecCccceeeeEEecccc--hhhhhcccccchhhhhHHH
Q psy15554 187 TLLVFFLVLGIVVFASLVYYAERLQVSP---------NIFQFIRSPVNVIDIIATLSFY--TDILLQDKVQQSDILEFFS 255 (339)
Q Consensus 187 ~~l~~~~~i~v~iFa~~iy~~er~~~~~---------~~~~f~~~~~al~~~i~tlttY--gdi~p~t~~g~~~~l~~lr 255 (339)
..++++.++.+++|+.+ |+.|+|++. .+.+|...|.+++|.++...+- .-+-++...-....+|-+|
T Consensus 125 ~~L~~LEiv~IV~Fg~E--fivRlWSAGC~~rYrG~~GRLrFarkp~cvIDiivi~Asi~vl~~g~qG~vfatSalrslR 202 (654)
T KOG1419|consen 125 GILYILEIVMIVFFGLE--FIVRLWSAGCCCRYRGWYGRLRFARKPFCVIDIIVIIASIAVLAAGSQGNVFATSALRSLR 202 (654)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHhcccccccccceeeEEeecCCceEEEEeeeeeeeeEEEecCccceeehhhhhhhH
Confidence 44556666778889989 999999776 3467788999999999887762 1111222222234688999
Q ss_pred HHHHhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeccCCCCccCC-CCCCcccchheeeeeee
Q psy15554 256 IIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQTLDRLY-EYSKLEIAIDYTSLKIS 334 (339)
Q Consensus 256 ilri~ri~kL~r~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~~~s~~~y~~E~~~~~~~~~-~f~s~~~~~ww~~~t~~ 334 (339)
.++++|++|+.|....+++|++++...++||....++-++..+++|.++|++|+++|.|..+ +|++..+|+||..||+|
T Consensus 203 FlQILRmlr~DRrggTWKLLGSvV~aH~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITlt 282 (654)
T KOG1419|consen 203 FLQILRMLRMDRRGGTWKLLGSVVYAHSKELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLT 282 (654)
T ss_pred HHHHHHHHHhhccCchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEE
Confidence 99999999999999999999999999999999999999999999999999999997776533 89999999999999998
Q ss_pred cc
Q psy15554 335 SF 336 (339)
Q Consensus 335 ~~ 336 (339)
..
T Consensus 283 TI 284 (654)
T KOG1419|consen 283 TI 284 (654)
T ss_pred ee
Confidence 64
No 10
>KOG2301|consensus
Probab=99.51 E-value=3.6e-13 Score=146.62 Aligned_cols=147 Identities=15% Similarity=0.269 Sum_probs=122.5
Q ss_pred chhhhHhhHhHHHHHhhhheeeEEecccCCccccccCccccccCCCCcccccccccCCCCchhhhhhhHHHHHHHHHHHH
Q psy15554 29 DAYMVILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSSFFISLDNSTAWVLHKEKTDPHAAFFYVELACNAWFTFELLV 108 (339)
Q Consensus 29 s~~~~~~~~~i~~~I~ls~i~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~~~~iF~~E~~l 108 (339)
-....+|..++..+|++|.++.+.|... ..+....+.++.+.|.+++.+|++|+++
T Consensus 836 iv~~~~f~~~I~~~illSs~ala~ed~~------------------------~~~~~~~~~~L~y~D~~Ft~iFt~Em~l 891 (1592)
T KOG2301|consen 836 IVEHDWFEAFILTVILISSLALAFEDVR------------------------GENRPTINGILEYADYIFTYIFTFEMLL 891 (1592)
T ss_pred eeeeeHHHHHHHHHHHHhhhcccccCcc------------------------hhhchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3445678999999999999998877711 1123335678999999999999999999
Q ss_pred hhhccCcchhhccccccchhhhhhhHHHHHHHHccccccchhHHHHHhhhhhhcccccccCcchhHHHHHHHHHHHHHHH
Q psy15554 109 RAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTL 188 (339)
Q Consensus 109 rl~~a~~~~~y~~~~~niiDl~~ilp~~v~~~~~~~~~~~~~lr~lRllRllRilrl~r~~~~l~~l~~tl~~s~~~l~~ 188 (339)
|+.+.+-+. |+++.||++|++++.-+.+.+.... ......+.+|.+|++|.+|.....+++|.....+..+.+.+.+
T Consensus 892 K~ia~Gf~~-y~rn~w~~lDf~Vv~vslisl~~~~--~~~~~ik~lr~lRaLRPLR~i~r~~~mr~Vv~~l~~a~~~I~n 968 (1592)
T KOG2301|consen 892 KWIAYGFFF-YFRNAWNWLDFVVVIVSLISLIASL--KILSLIKSLRILRALRPLRALSRFPGMRVVVLALFGGLPEIFN 968 (1592)
T ss_pred HHHHhHHHH-HHhhHHhhhhHHHhhhHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHH
Confidence 999877766 9999999999999999998887652 2456788999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHH
Q psy15554 189 LVFFLVLGIVVFAS 202 (339)
Q Consensus 189 l~~~~~i~v~iFa~ 202 (339)
..+...+.+++||.
T Consensus 969 v~lV~li~~fiFai 982 (1592)
T KOG2301|consen 969 VLLVCLIFWFIFAI 982 (1592)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887774
No 11
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.41 E-value=4.7e-13 Score=141.71 Aligned_cols=212 Identities=13% Similarity=0.196 Sum_probs=128.5
Q ss_pred ceeeccccchhhhHhhHhHHHHHhhhheeeEEecccCCccccccCccccccCCCCcccccccccCCCCchhhhhhhHHHH
Q psy15554 21 VYKVETIGDAYMVILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSSFFISLDNSTAWVLHKEKTDPHAAFFYVELACNA 100 (339)
Q Consensus 21 ~~~~~~~~s~~~~~~~~~i~~~I~ls~i~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~~~~ 100 (339)
-+.-+|.++.+ ++++.++.++++.+++..-.+..-. +......+..+|.++.+
T Consensus 51 ~~ii~P~~~~~-~~Wd~~~~~~~~y~~~~~p~~~~F~--------------------------~~~~~~~~~~~d~i~~~ 103 (823)
T PLN03192 51 GWIISPMDSRY-RWWETLMVVLVAYSAWVYPFEVAFL--------------------------NASPKRGLEIADNVVDL 103 (823)
T ss_pred CeEECCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHee--------------------------CCCCCCCeeeHHHHHHH
Confidence 34567865555 6788888888888777654444100 11122246789999999
Q ss_pred HHHHHHHHhhhccC----------c----chhhccccccchhhhhhhHHHHHHHH-ccccccchhHHHHHhhhhhhcccc
Q psy15554 101 WFTFELLVRAVVSP----------N----IFQFIRSPVNVIDIIATLSFYTDILL-QDKVQQSDILEFFSIIRILRLFKL 165 (339)
Q Consensus 101 iF~~E~~lrl~~a~----------~----~~~y~~~~~niiDl~~ilp~~v~~~~-~~~~~~~~~lr~lRllRllRilrl 165 (339)
+|.+|+++|++.+. + .++|+++++ ++|+++++|+.+.... ....+....++++|++|++|+.|+
T Consensus 104 ~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~~~f-~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl~ri 182 (823)
T PLN03192 104 FFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLSTWF-LMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRV 182 (823)
T ss_pred HHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHHHhH-HHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHH
Confidence 99999999998872 1 468987765 9999999998654322 211112223444444444444444
Q ss_pred cccCcchhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCc-------------ceeecCccceeeeE
Q psy15554 166 TRHSPGLKILIHTFKA--SAKELTLLVFFLVLGIVVFASLVYYAERLQVSPNI-------------FQFIRSPVNVIDII 230 (339)
Q Consensus 166 ~r~~~~l~~l~~tl~~--s~~~l~~l~~~~~i~v~iFa~~iy~~er~~~~~~~-------------~~f~~~~~al~~~i 230 (339)
.+....++ ...+. ...++..++..++.++.++|+++|+....+..++. ..+..+..++||++
T Consensus 183 ~~~~~~le---~~~~~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai 259 (823)
T PLN03192 183 KQLFTRLE---KDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSI 259 (823)
T ss_pred HHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHHHHHHHHHH
Confidence 43332222 12111 12234444555566778888888776542222221 01112334899999
Q ss_pred Eeccc--chhhhhcccccchhhhhHHHHHHHhhhccc
Q psy15554 231 ATLSF--YTDILLQDKVQQSDILEFFSIIRILRLFKL 265 (339)
Q Consensus 231 ~tltt--Ygdi~p~t~~g~~~~l~~lrilri~ri~kL 265 (339)
+||+| |||+.|.+..++ ++.++-++-+.-++..
T Consensus 260 ~TmtTVGYGDi~p~t~~E~--i~~i~~ml~g~~~~a~ 294 (823)
T PLN03192 260 TTMTTVGYGDLHAVNTIEM--IFIIFYMLFNLGLTAY 294 (823)
T ss_pred HHHhhccCCCcCCCccchH--HHHHHHHHHHHHHHHH
Confidence 99999 999999999887 6666666655555433
No 12
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.31 E-value=2.6e-12 Score=111.55 Aligned_cols=150 Identities=19% Similarity=0.283 Sum_probs=117.1
Q ss_pred hhhhHHHHHHHHHHHHhhhccCc-chhhccccccchhhhhhhHHHHHHHHccccc--cchhHHHHHhhhhhhcccccccC
Q psy15554 93 YVELACNAWFTFELLVRAVVSPN-IFQFIRSPVNVIDIIATLSFYTDILLQDKVQ--QSDILEFFSIIRILRLFKLTRHS 169 (339)
Q Consensus 93 ~ie~~~~~iF~~E~~lrl~~a~~-~~~y~~~~~niiDl~~ilp~~v~~~~~~~~~--~~~~lr~lRllRllRilrl~r~~ 169 (339)
++|.++..+|++|.++|+++.+- +.+|++++||++|+++++|..+......... .....+..|++|.+|++|+.|..
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~~~~~~ 80 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRLLRLLRLLRLLRRF 80 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhcccccccccccccccccccccccccceEEEEEeecccccccccccc
Confidence 47899999999999999998775 3899999999999999999977765543111 02357888888888888888888
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------------CCCcceeecCccceeeeEEeccc-
Q psy15554 170 PGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQV-------------SPNIFQFIRSPVNVIDIIATLSF- 235 (339)
Q Consensus 170 ~~l~~l~~tl~~s~~~l~~l~~~~~i~v~iFa~~iy~~er~~~-------------~~~~~~f~~~~~al~~~i~tltt- 235 (339)
+.++....++.++.+.+...........+.++...+...+... ..+...|.+.+.+++++..++++
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~~~~~~t~~ 160 (200)
T PF00520_consen 81 RSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFGESLYWLFQTMTGE 160 (200)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHHHHHHHHHHHHTTT
T ss_pred ccccccccccccccccccccccccccccccccchhheecccccccccccccccccccccccccccccccccccccccccC
Confidence 9999998888888888888877777888888877655544211 11123567778899999999988
Q ss_pred -chhhhhc
Q psy15554 236 -YTDILLQ 242 (339)
Q Consensus 236 -Ygdi~p~ 242 (339)
|+|..|.
T Consensus 161 ~~~~~~~~ 168 (200)
T PF00520_consen 161 GWGDVMPS 168 (200)
T ss_dssp TCCCCHHH
T ss_pred Cccccccc
Confidence 8888886
No 13
>KOG1420|consensus
Probab=99.31 E-value=1.6e-12 Score=125.97 Aligned_cols=175 Identities=20% Similarity=0.253 Sum_probs=119.3
Q ss_pred CCchhhhhhhHHHHHHHHHHHHhhhccCcchhhccccccchhhhhhhHHHHHHHHccccccchhHHHHHhhhhhhccccc
Q psy15554 87 PHAAFFYVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLT 166 (339)
Q Consensus 87 ~~~~l~~ie~~~~~iF~~E~~lrl~~a~~~~~y~~~~~niiDl~~ilp~~v~~~~~~~~~~~~~lr~lRllRllRilrl~ 166 (339)
+++.-..+|..++++|.+.+.+|+++|.+|..|+...++++|+.++.|+++.+.+. ...-.+|++|.+|++.+-.+.
T Consensus 160 ~~~~tqqidlafnifflvyffirfiaasdklwf~lemys~vdfftippsfvsiyl~---r~wlglrflralrlmtvpdil 236 (1103)
T KOG1420|consen 160 YKDFTQQIDLAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSFVSIYLN---RSWLGLRFLRALRLMTVPDIL 236 (1103)
T ss_pred hhChHHHhhhHhhHHHHHHHHHHHhhcccceeeeeehhhheeeeecCchheEEEec---cchHHHHHHHHHHhccHHHHH
Confidence 44556789999999999999999999999999999999999999999998876543 222334555544444333333
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceee-----cCccceeeeEEeccc--chhh
Q psy15554 167 RHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFI-----RSPVNVIDIIATLSF--YTDI 239 (339)
Q Consensus 167 r~~~~l~~l~~tl~~s~~~l~~l~~~~~i~v~iFa~~iy~~er~~~~~~~~~f~-----~~~~al~~~i~tltt--Ygdi 239 (339)
++. ..+ -..+..++..++-+....++..++.++..|. .+.|.+ +|. ++..+.|++++||+| |||+
T Consensus 237 qyl---nil---ktsssirl~qlvsifisvwltaag~ihllen-sgdp~~-~f~n~hrltyw~cvyfl~vtmstvgygdv 308 (1103)
T KOG1420|consen 237 QYL---NIL---KTSSSIRLVQLVSIFISVWLTAAGFIHLLEN-SGDPWE-NFQNNHRLTYWECVYFLMVTMSTVGYGDV 308 (1103)
T ss_pred HHH---HHH---hccchhhHHHHHHHHHHHHHhhcceeehhhc-CCChhH-hccCcccchhhheeeeeEEEeeeccccce
Confidence 322 111 1223334444433344444556666666665 223322 233 356789999999999 9999
Q ss_pred hhcccccchhhhhHHHHHHHhhhcccccCchHHHHHH
Q psy15554 240 LLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILI 276 (339)
Q Consensus 240 ~p~t~~g~~~~l~~lrilri~ri~kL~r~~~~l~~L~ 276 (339)
+-+|..|| .+.++.++.++.+| +.|.+++--|.
T Consensus 309 yc~t~lgr--lfmvffil~glamf--asyvpeiieli 341 (1103)
T KOG1420|consen 309 YCKTTLGR--LFMVFFILGGLAMF--ASYVPEIIELI 341 (1103)
T ss_pred eehhhhhH--HHHHHHHHHHHHHH--HhhhHHHHHHH
Confidence 99999988 77888888888877 56666654443
No 14
>KOG2301|consensus
Probab=99.21 E-value=3.6e-11 Score=131.30 Aligned_cols=174 Identities=16% Similarity=0.254 Sum_probs=138.7
Q ss_pred hhHhhHhHHHHHhhhheeeEEecccCCccccccCccccccCCCCcccccccccCCCCchhhhhhhHHHHHHHHHHHHhhh
Q psy15554 32 MVILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSSFFISLDNSTAWVLHKEKTDPHAAFFYVELACNAWFTFELLVRAV 111 (339)
Q Consensus 32 ~~~~~~~i~~~I~ls~i~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~~~~iF~~E~~lrl~ 111 (339)
++.|++.++.+|+++.+.+++++ ++|+..+...+..++.+++.+|+.|+++|++
T Consensus 1156 ~~~F~~~i~~li~ln~i~l~~~~--------------------------~~qs~~~~~~l~~in~vft~~Ft~E~vLKii 1209 (1592)
T KOG2301|consen 1156 SQAFDYLIMLLIFLNTIIMMVET--------------------------YDQSDTYTAILTILNAVFIVLFTIECILKVI 1209 (1592)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhh--------------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56699999999999999999999 3345556678899999999999999999999
Q ss_pred ccCcchhhccccccchhhhhhhHHHHHHHHccc----cccchhHHHHHhhhhhhcccccccCcchhHHHHHHHHHHHHHH
Q psy15554 112 VSPNIFQFIRSPVNVIDIIATLSFYTDILLQDK----VQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELT 187 (339)
Q Consensus 112 ~a~~~~~y~~~~~niiDl~~ilp~~v~~~~~~~----~~~~~~lr~lRllRllRilrl~r~~~~l~~l~~tl~~s~~~l~ 187 (339)
+ -....|+.++||++|++.++-+.+...+... .......++.|++|+.|++|+.+..+++|.+..++..|.+.+.
T Consensus 1210 A-~~~~~yf~~~WN~FDfvvvIlSIv~~~ls~~~~~~~~~~~~~~~~rl~rV~R~l~Li~~~~~ir~LL~t~~~Sl~al~ 1288 (1592)
T KOG2301|consen 1210 A-LRFRGYFTSAWNVFDFVVTILSIVGIVLSEAVEKYESSPTLLRFLRLFRVGRFLRLIPQAKTIRTLLLTLMMSLPALF 1288 (1592)
T ss_pred H-hhhhHhccccchheEeeeeeHhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhHHHH
Confidence 7 3447899999999999999888877666541 1235578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh---ccCCCcceeecCccceeeeEEe
Q psy15554 188 LLVFFLVLGIVVFASLVYYAERL---QVSPNIFQFIRSPVNVIDIIAT 232 (339)
Q Consensus 188 ~l~~~~~i~v~iFa~~iy~~er~---~~~~~~~~f~~~~~al~~~i~t 232 (339)
.+.+.+.+..++||..+-..... .+-.+..+|.+.+.++.=+.-.
T Consensus 1289 ~i~lLl~ll~fiYAi~Gmq~Fg~Vkl~~i~~~~NF~tf~~a~i~LFr~ 1336 (1592)
T KOG2301|consen 1289 FIILLLFLLFFIYAIIGMQLFGYVKLGGINDHNNFRTFPNSMVVLFRC 1336 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeccccCCCcccccchhheeeeeeh
Confidence 98888888888888754333321 1112233677777776555443
No 15
>KOG2302|consensus
Probab=99.08 E-value=7.9e-11 Score=119.78 Aligned_cols=145 Identities=22% Similarity=0.368 Sum_probs=123.7
Q ss_pred hhHhhHhHHHHHhhhheeeEEecccCCccccccCccccccCCCCcccccccccCCCCchhhhhhhHHHHHHHHHHHHhhh
Q psy15554 32 MVILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSSFFISLDNSTAWVLHKEKTDPHAAFFYVELACNAWFTFELLVRAV 111 (339)
Q Consensus 32 ~~~~~~~i~~~I~ls~i~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~~~~iF~~E~~lrl~ 111 (339)
+.+.+.++.++|.+|++++..|. +||+......+.+.++.++++|..|.+++++
T Consensus 1440 Shyld~fit~ii~LnvVtms~eh--------------------------yqqp~sldealkycny~ft~vfV~EaV~klv 1493 (1956)
T KOG2302|consen 1440 SHYLDQFITFIICLNVVTMSEEH--------------------------YQQPTSLDEALKYCNYRFTAVFVLEAVLKLV 1493 (1956)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--------------------------HhCcccHHHHhhhcceeeeehhHHHHHHHHH
Confidence 34567789999999999999888 5667778889999999999999999999999
Q ss_pred ccCcchhhccccccchhhhhhhHHHHHHHHcc------ccccchhHHHHHhhhhhhcccccccCcchhHHHHHHHHHHHH
Q psy15554 112 VSPNIFQFIRSPVNVIDIIATLSFYTDILLQD------KVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKE 185 (339)
Q Consensus 112 ~a~~~~~y~~~~~niiDl~~ilp~~v~~~~~~------~~~~~~~lr~lRllRllRilrl~r~~~~l~~l~~tl~~s~~~ 185 (339)
+++. .+|+++-||-+|+..++-+...+.++. .+-...+.|++|++|+.|++|+.+...++|.+..++....++
T Consensus 1494 afG~-rrFfkdrwnqldlaivlls~mgitleeie~naalpinptiirimrvlriarvlkllkmatgmralldtvvqalpq 1572 (1956)
T KOG2302|consen 1494 AFGE-RRFFKDRWNQLDLAIVLLSVMGITLEEIEINAALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQ 1572 (1956)
T ss_pred HHhH-HHHHhhhhhhhhHHHHHHHHhcccHhheeecccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8764 579999999999988887776665544 233456899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15554 186 LTLLVFFLVLGIVVFASL 203 (339)
Q Consensus 186 l~~l~~~~~i~v~iFa~~ 203 (339)
.+++.++..+..++|+..
T Consensus 1573 vgnlgllfmllffiyaal 1590 (1956)
T KOG2302|consen 1573 VGNLGLLFMLLFFIYAAL 1590 (1956)
T ss_pred ccchhHHHHHHHHHHHHH
Confidence 998887777777777764
No 16
>KOG0498|consensus
Probab=98.74 E-value=2.9e-08 Score=101.60 Aligned_cols=195 Identities=15% Similarity=0.183 Sum_probs=119.0
Q ss_pred CCCchhhhhhhHHHHHHHHHHHHhhhccCc--------------chhhccccccchhhhhhhHHHHHHHHcc------cc
Q psy15554 86 DPHAAFFYVELACNAWFTFELLVRAVVSPN--------------IFQFIRSPVNVIDIIATLSFYTDILLQD------KV 145 (339)
Q Consensus 86 ~~~~~l~~ie~~~~~iF~~E~~lrl~~a~~--------------~~~y~~~~~niiDl~~ilp~~v~~~~~~------~~ 145 (339)
.....+..+|.+..++|++++++++..+-- ..+|+++++ ++|+++++|+-....... ..
T Consensus 114 ~~~~~l~v~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA~rYl~twF-iiDlis~lP~~~i~~~~~~~~~~~~~ 192 (727)
T KOG0498|consen 114 KLAAPLTVLDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIAKRYLKTWF-LIDLISTLPFDQIVVLVVIGSTSLAL 192 (727)
T ss_pred cccCceeeHHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHHHHHHhhhH-HHHHHHhcChhhheeeeeecccchhh
Confidence 345567899999999999999999987541 368999877 999999999876544311 01
Q ss_pred ccchhHHHHHhhhhhhcccccccCcchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CCCc------
Q psy15554 146 QQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFK-ASAKELTLLVFFLVLGIVVFASLVYYAERLQV--SPNI------ 216 (339)
Q Consensus 146 ~~~~~lr~lRllRllRilrl~r~~~~l~~l~~tl~-~s~~~l~~l~~~~~i~v~iFa~~iy~~er~~~--~~~~------ 216 (339)
+.....+++.+.|+.|+.|+.+..+.+..-..... .+..-....+...+++..+.|++.|++..-.. |+.+
T Consensus 193 ~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~ 272 (727)
T KOG0498|consen 193 ESTILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGS 272 (727)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccc
Confidence 11123333333444444444433333332222222 11222324444455677788888777643222 2221
Q ss_pred ------ce-----ee------cCccceeeeEEeccc--chhhhhcccccchhhhhHHHHHHHhhhcccccCchHHHHHHH
Q psy15554 217 ------FQ-----FI------RSPVNVIDIIATLSF--YTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIH 277 (339)
Q Consensus 217 ------~~-----f~------~~~~al~~~i~tltt--Ygdi~p~t~~g~~~~l~~lrilri~ri~kL~r~~~~l~~L~~ 277 (339)
+. |. ++..++||.+.+|+| ||+..|++.... ++.++-++-++-++.+ -...++.+.+
T Consensus 273 l~~~~~~~~~~~~fg~~s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~--iFsi~~mi~GllL~A~--lIGNmt~~iq 348 (727)
T KOG0498|consen 273 LGRLLSCYNLSFTFGIYSLALKYVYALYWGLSTLSTVGYGLVHANNMGEK--IFSIFIMLFGLLLFAY--LIGNMTALLQ 348 (727)
T ss_pred cccccccCcccccccchhHHHHHHHHHHHHhhHhhhccCCccCCCCcHHH--HHHHHHHHHhHHHHHH--HHhhHHHhHH
Confidence 00 11 234689999999999 999999887765 7777777777776644 3455666666
Q ss_pred HHHHHHHH
Q psy15554 278 TFKASAKE 285 (339)
Q Consensus 278 ~~~~~~~~ 285 (339)
.+....++
T Consensus 349 s~tsR~~~ 356 (727)
T KOG0498|consen 349 SLTSRTEE 356 (727)
T ss_pred HHhHHHHH
Confidence 66655544
No 17
>KOG0501|consensus
Probab=98.45 E-value=8.2e-07 Score=87.09 Aligned_cols=160 Identities=14% Similarity=0.207 Sum_probs=98.2
Q ss_pred chhhhhhhHHHHHHHHHHHHhhhccC---c----------chhhccccccchhhhhhhHHHHHHHHcc-ccccchhHHHH
Q psy15554 89 AAFFYVELACNAWFTFELLVRAVVSP---N----------IFQFIRSPVNVIDIIATLSFYTDILLQD-KVQQSDILEFF 154 (339)
Q Consensus 89 ~~l~~ie~~~~~iF~~E~~lrl~~a~---~----------~~~y~~~~~niiDl~~ilp~~v~~~~~~-~~~~~~~lr~l 154 (339)
..+..+|.+..++|.+|+++++-..- . |..|+++|+ ++|+++-+|+.+.-.+.. ..+..+.+..+
T Consensus 249 vs~lvvDSiVDVIF~vDIvLNFHTTFVGPgGEVvsdPkvIRmNYlKsWF-vIDLLSCLPYDi~naF~~~degI~SLFSaL 327 (971)
T KOG0501|consen 249 VSWLVVDSIVDVIFFVDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWF-VIDLLSCLPYDIFNAFERDDEGIGSLFSAL 327 (971)
T ss_pred eeEEEecchhhhhhhhhhhhhcceeeecCCCceecChhHHhHHHHHHHH-HHHHHhcccHHHHHHhhcccccHHHHHHHH
Confidence 34668999999999999999987621 1 789999987 999999999988766654 22223344444
Q ss_pred HhhhhhhcccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------cCCCc----------
Q psy15554 155 SIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQ--------VSPNI---------- 216 (339)
Q Consensus 155 RllRllRilrl~r~~~~l~~l~~tl~~s~~~l~~l~~~~~i~v~iFa~~iy~~er~~--------~~~~~---------- 216 (339)
+++|++|+=|..|. +-+.+.-....+..+++.-.+...+.++++|.+-+.. ..|+.
T Consensus 328 KVVRLLRLGRVaRK------LD~YlEYGAA~LvLLlC~y~lvAHWlACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~~~ 401 (971)
T KOG0501|consen 328 KVVRLLRLGRVARK------LDHYLEYGAAVLVLLLCVYGLVAHWLACIWYSIGDYEVRDEMDNTIQPDSWLWKLANDIG 401 (971)
T ss_pred HHHHHHHHHHHHHH------HHHHHHhhHHHHHHHHHHHHHHHHHHHHhheeccchheecccccccccchHHHHHHhhcC
Confidence 44444444444432 2233333333333333333445566777766554421 00100
Q ss_pred -----------------ceeecCccceeeeEEeccc--chhhhhcccccchhhhhHHH
Q psy15554 217 -----------------FQFIRSPVNVIDIIATLSF--YTDILLQDKVQQSDILEFFS 255 (339)
Q Consensus 217 -----------------~~f~~~~~al~~~i~tltt--Ygdi~p~t~~g~~~~l~~lr 255 (339)
.+-.-+..++|+.+..|+| +|.+.|+|...+...+.++.
T Consensus 402 tpY~~~~s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMi 459 (971)
T KOG0501|consen 402 TPYNYNLSNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMI 459 (971)
T ss_pred CCceeccCCCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHH
Confidence 1111134578999999999 99999999988844444333
No 18
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=98.31 E-value=2.5e-07 Score=80.02 Aligned_cols=141 Identities=18% Similarity=0.242 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHhhhccCCC-cceeecCccceeeeEEecccchhhhhcccccc--hhhhhHHHHHHHhhhcccccCch
Q psy15554 194 VLGIVVFASLVYYAERLQVSPN-IFQFIRSPVNVIDIIATLSFYTDILLQDKVQQ--SDILEFFSIIRILRLFKLTRHSP 270 (339)
Q Consensus 194 ~i~v~iFa~~iy~~er~~~~~~-~~~f~~~~~al~~~i~tlttYgdi~p~t~~g~--~~~l~~lrilri~ri~kL~r~~~ 270 (339)
.++..+|..+ ...+....+- +.+|.+.+.+..|.++.+|...+..+....+. ....+..|++|.+|++|+.|..+
T Consensus 4 ~~~~~~f~~e--~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~~~~~~~ 81 (200)
T PF00520_consen 4 IIFDVIFILE--IVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRLLRLLRLLRLLRRFR 81 (200)
T ss_dssp HHHHHHHHHH--HHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHH--HHHHHHHhccHHHHHhcChhhcccccccccccccccccccccccccceEEEEEeeccccccccccccc
Confidence 3455667776 4556555553 23788889999999999988555555432210 13577788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeccCCCC-------------ccCCCCCCcccchheeeeeeecc
Q psy15554 271 GLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQTL-------------DRLYEYSKLEIAIDYTSLKISSF 336 (339)
Q Consensus 271 ~l~~L~~~~~~~~~~l~~~~~~~~~~~~~~s~~~y~~E~~~~~-------------~~~~~f~s~~~~~ww~~~t~~~~ 336 (339)
.++.+..++.+..+++.....+..+.+..+|.+.+..-++.+. +..++|++.+.++||++.|+|.-
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~~~~~~t~~ 160 (200)
T PF00520_consen 82 SLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFGESLYWLFQTMTGE 160 (200)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHHHHHHHHHHHHTTT
T ss_pred cccccccccccccccccccccccccccccccchhheecccccccccccccccccccccccccccccccccccccccccC
Confidence 8999999999999999888888888888888888877665432 12347999999999999988864
No 19
>PLN03223 Polycystin cation channel protein; Provisional
Probab=97.58 E-value=0.0004 Score=74.64 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=53.2
Q ss_pred hhhhhhcccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEE
Q psy15554 156 IIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIA 231 (339)
Q Consensus 156 llRllRilrl~r~~~~l~~l~~tl~~s~~~l~~l~~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~ 231 (339)
+++++|++|++|..+.++.+..++..+.+.+...++..+++.+.|+...+.... .... .|.+...++..++.
T Consensus 1300 FLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF~IVF~AFAqLG~LLFG---t~ve-~FSTf~sSL~TLFq 1371 (1634)
T PLN03223 1300 ILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIFGMVFVGYAFIGHVIFG---NASV-HFSDMTDSINSLFE 1371 (1634)
T ss_pred HHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCch-hhcCHHHHHHHHHH
Confidence 467788999999999999999999999999998888888888888877655433 2222 56665555444443
No 20
>KOG0500|consensus
Probab=97.53 E-value=0.00026 Score=68.80 Aligned_cols=190 Identities=12% Similarity=0.142 Sum_probs=114.3
Q ss_pred CCchhhhhhhHHHHHHHHHHHHhhhccC------------cchhhccccccchhhhhhhHHHHHHHHccccccchhHHHH
Q psy15554 87 PHAAFFYVELACNAWFTFELLVRAVVSP------------NIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFF 154 (339)
Q Consensus 87 ~~~~l~~ie~~~~~iF~~E~~lrl~~a~------------~~~~y~~~~~niiDl~~ilp~~v~~~~~~~~~~~~~lr~l 154 (339)
+...+..+|..+..+|.+|.++|.-..- -+.+|+.+..-.+|.++++|.....+... .....|..
T Consensus 27 y~~~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~liP~D~l~~~~~---~~~~~r~n 103 (536)
T KOG0500|consen 27 YLENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSLIPLDLLLFKDG---SASLERLN 103 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhhcchhHHhhcCC---cchHHHHH
Confidence 3445678999999999999999976521 15788888877999999999887765442 12334444
Q ss_pred HhhhhhhcccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------ccCC--Ccceeec----
Q psy15554 155 SIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERL-------QVSP--NIFQFIR---- 221 (339)
Q Consensus 155 RllRllRilrl~r~~~~l~~l~~tl~~s~~~l~~l~~~~~i~v~iFa~~iy~~er~-------~~~~--~~~~f~~---- 221 (339)
|++|+-|+...... .-.++-....-++..++..+++...+.|+..|++-.. |..| ....|..
T Consensus 104 Rllk~yRl~~F~~r-----TetrT~~Pn~fri~~lv~~~~ilfHWNaClYf~iS~~~g~~~d~wvY~~i~d~~~~~c~~~ 178 (536)
T KOG0500|consen 104 RLLKIYRLFEFFDR-----TETRTTYPNAFRISKLVHYCLILFHWNACLYFLISKAIGFTTDDWVYPKINDPEFATCDAG 178 (536)
T ss_pred HHHHHHHHHHHHHH-----hccccCCchHHHHHHHHHHHHHHHHHhhHHHHhhhHhcCccccccccCCccCccccccchh
Confidence 44444444433321 1223333444455666677777778888874443221 2222 1112221
Q ss_pred -----CccceeeeEEecccchhhhhcccccchhhhhHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHH
Q psy15554 222 -----SPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELT 287 (339)
Q Consensus 222 -----~~~al~~~i~tlttYgdi~p~t~~g~~~~l~~lrilri~ri~kL~r~~~~l~~L~~~~~~~~~~l~ 287 (339)
+..++||..-|+||-|+..|+..... -.+.++-.+-++-+|.- -..+.......+.+.+.|.-
T Consensus 179 n~~ReY~~S~YWStLTlTTiGe~P~P~t~~e-y~F~I~d~LiGvliFAt--IvG~VGsmVtnmna~r~EFq 246 (536)
T KOG0500|consen 179 NLTREYLYSLYWSTLTLTTIGEQPPPVTSSE-YAFVIVDTLIGVLIFAT--IVGNVGSMVTNMNAARTEFQ 246 (536)
T ss_pred HHHHHHHHHHHHHhhhhhhccCCCCCCcCch-hhHHHHHHHHHHHHHhh--hhccHhHHHHhhhHHHHHHH
Confidence 34689999999999999876654433 24555555555555532 23345555566666655543
No 21
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=97.21 E-value=0.0019 Score=63.68 Aligned_cols=124 Identities=19% Similarity=0.246 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhhhccCcchhhccccccchhhhhhhHHHHHHHHcc---------------ccccc--------------h
Q psy15554 99 NAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQD---------------KVQQS--------------D 149 (339)
Q Consensus 99 ~~iF~~E~~lrl~~a~~~~~y~~~~~niiDl~~ilp~~v~~~~~~---------------~~~~~--------------~ 149 (339)
.+.|+..-+.++... +++|++++||++|++.++-....+.... +.... .
T Consensus 221 ~l~~~~~ei~~i~~~--g~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~f~~~a~~~~~~~~ 298 (425)
T PF08016_consen 221 VLYFLYREIKKIRRE--GRAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVDFQELAQWDQLYRY 298 (425)
T ss_pred HHHHHHHHHHHHHHh--hhHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHHHHHHHHHHH
Confidence 334444444455443 4789999999999987765544333221 00000 0
Q ss_pred hHHHHHhhhhhhcccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceeecCccceee
Q psy15554 150 ILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVID 228 (339)
Q Consensus 150 ~lr~lRllRllRilrl~r~~~~l~~l~~tl~~s~~~l~~l~~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~ 228 (339)
....+=.+-.+|++|+.|..+.++.+.++++.+.+++....+...++.+-|+...+.... +...+|.+.+.++..
T Consensus 299 l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG----~~~~~f~s~~~s~~t 373 (425)
T PF08016_consen 299 LLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFG----SYSEDFSSFSSSLVT 373 (425)
T ss_pred HHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCccccCCHHHHHHH
Confidence 011111234578888888889999999999999999999888888888888887655544 222256665555433
No 22
>PRK10537 voltage-gated potassium channel; Provisional
Probab=97.19 E-value=0.0013 Score=64.04 Aligned_cols=101 Identities=19% Similarity=0.215 Sum_probs=58.1
Q ss_pred HHHHHhhhhhhcccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhccCCCcceeecCccceeee
Q psy15554 151 LEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLV-YYAERLQVSPNIFQFIRSPVNVIDI 229 (339)
Q Consensus 151 lr~lRllRllRilrl~r~~~~l~~l~~tl~~s~~~l~~l~~~~~i~v~iFa~~i-y~~er~~~~~~~~~f~~~~~al~~~ 229 (339)
.+.++.+-++++..+.++.+.......+.. ..........+..++... |+.+. ...| .+.+..+++||.
T Consensus 107 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~l~~~~~~~~l~~~~~~g~~~~~~-~f~~---~~~s~~dA~y~s 176 (393)
T PRK10537 107 LKFLIGYCIVLLVALLIYRRDFDRSSLAAG------TLFAVISITSLLFYSTFGALYLGD-GFSP---PIESLSTAFYFS 176 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHcc-ccCc---CCCCHHHHHHhh
Confidence 455555566666666665544433321111 122233334445555553 34443 1122 345677999999
Q ss_pred EEeccc--chhhhhcccccchhhhhHHHHHHHhhhc
Q psy15554 230 IATLSF--YTDILLQDKVQQSDILEFFSIIRILRLF 263 (339)
Q Consensus 230 i~tltt--Ygdi~p~t~~g~~~~l~~lrilri~ri~ 263 (339)
++|++| |||+.|.+..|| ++.+..++-+.-++
T Consensus 177 vvt~tTvGyGdi~p~t~~gr--l~~i~~ii~Gi~vf 210 (393)
T PRK10537 177 IVTMSTVGYGDIVPVSESAR--LFTISVIILGITVF 210 (393)
T ss_pred heeeecccCCCCCCCCHHHH--HHHHHHHHHHHHHH
Confidence 999999 999999998877 55555554444433
No 23
>KOG3599|consensus
Probab=97.09 E-value=0.0027 Score=66.79 Aligned_cols=150 Identities=18% Similarity=0.196 Sum_probs=92.1
Q ss_pred hhhHHHHHHHHHHHHhhhccCcchhhccccccchhhhhhhHHHHHHHHcc----------------cc----------cc
Q psy15554 94 VELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQD----------------KV----------QQ 147 (339)
Q Consensus 94 ie~~~~~iF~~E~~lrl~~a~~~~~y~~~~~niiDl~~ilp~~v~~~~~~----------------~~----------~~ 147 (339)
+=.++...|+++-.+++.. ...++|+++.||++|+..+.-.++...+.. +. +.
T Consensus 471 vf~l~~~yf~~~e~~~i~~-~~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~a~~ 549 (798)
T KOG3599|consen 471 VFLLFVLYFAVAEGLKIWI-HRLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEVAQW 549 (798)
T ss_pred HHHHHHHHHHHHHHHHHHH-hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHH
Confidence 3344455667777777664 234599999999999987766655544432 00 00
Q ss_pred chhHHHHH----hhhhhhcccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceeecCc
Q psy15554 148 SDILEFFS----IIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSP 223 (339)
Q Consensus 148 ~~~lr~lR----llRllRilrl~r~~~~l~~l~~tl~~s~~~l~~l~~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~ 223 (339)
....+.++ .+-.+|+.|..|..+.++.+..++.++.+++....+...+..+.++...|.....+ -+ .|.
T Consensus 550 ~~~~~~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~--v~--~f~--- 622 (798)
T KOG3599|consen 550 NIAARNLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQ--VS--DFR--- 622 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--cC--ChH---
Confidence 11122222 34468888999999999999999999999998877777677777777766655411 11 232
Q ss_pred cceeeeEEeccc--chhhhhcccccchhhhh
Q psy15554 224 VNVIDIIATLSF--YTDILLQDKVQQSDILE 252 (339)
Q Consensus 224 ~al~~~i~tltt--Ygdi~p~t~~g~~~~l~ 252 (339)
++...+.|+.- -||..|.+.....+.+.
T Consensus 623 -~f~~s~~t~~~~~~G~~~~~~i~~~~r~LG 652 (798)
T KOG3599|consen 623 -TFVASIVTLLRYILGDFCPAEIFHANRILG 652 (798)
T ss_pred -HHHHHHHHHHHHHhccCCccccccCCchHH
Confidence 23333333332 67777766443333443
No 24
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=97.07 E-value=0.00033 Score=52.17 Aligned_cols=62 Identities=18% Similarity=0.265 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEeccc--chhhhhcccccchhhhhHHHHHHHhhhc
Q psy15554 194 VLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSF--YTDILLQDKVQQSDILEFFSIIRILRLF 263 (339)
Q Consensus 194 ~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tltt--Ygdi~p~t~~g~~~~l~~lrilri~ri~ 263 (339)
+..++.++...|+.++ . +++ .+..+++|+.+++++| |||+.|+++.|| .+.++-++-+.-++
T Consensus 3 ~~~~l~~~~~~~~~~~--~-~~~---~~~~da~yfs~~t~tTvGyGDi~p~t~~gr--~~~~~~~~~G~~~~ 66 (79)
T PF07885_consen 3 LLLVLAFGAIFFYISE--G-SEK---WSFIDALYFSFVTITTVGYGDIVPQTPAGR--IFTIIYMLIGIFLF 66 (79)
T ss_dssp HHHHHHHHHHHHHHTT--S-SST---TSHHHHHHHHHHHHTT---SSSSTSSHHHH--HHHHHHHHHHHHHH
T ss_pred EEeeeHHHHHHHHHHH--h-ccc---CCHHHHHHHHHHHHhcccCCCccCCccchH--HHHHHHHHHHHHHH
Confidence 3445556666555522 1 333 3455899999999999 999999988776 45455544444443
No 25
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=96.87 E-value=0.00034 Score=74.61 Aligned_cols=50 Identities=10% Similarity=0.056 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhhhhheeccCCCCccCCC-C----CCccc---------chheeeeeeecc
Q psy15554 286 LTLLVFFLVLGIVVFASLVYYAERLQTLDRLYE-Y----SKLEI---------AIDYTSLKISSF 336 (339)
Q Consensus 286 l~~~~~~~~~~~~~~s~~~y~~E~~~~~~~~~~-f----~s~~~---------~~ww~~~t~~~~ 336 (339)
+.-++++++.++-++|++.|++... +|+..++ . .++.+ |+|||++|||+.
T Consensus 202 ~~kli~~~l~~~H~~aC~~y~i~~~-~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai~TmtTV 265 (823)
T PLN03192 202 CARLLSVTLFLVHCAGCLYYLIADR-YPHQGKTWIGAVIPNFRETSLWIRYISAIYWSITTMTTV 265 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCchHHHhhhccccCcHHHHHHHHHHHHHHHHhhc
Confidence 4445555666677788888887532 2222111 1 22222 899999999974
No 26
>PRK10537 voltage-gated potassium channel; Provisional
Probab=96.06 E-value=0.0073 Score=58.86 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=46.8
Q ss_pred hhHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hheeccCCCCccCCCCCCcccchhee
Q psy15554 251 LEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASL-VYYAERLQTLDRLYEYSKLEIAIDYT 329 (339)
Q Consensus 251 l~~lrilri~ri~kL~r~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~~~s~~-~y~~E~~~~~~~~~~f~s~~~~~ww~ 329 (339)
.+.++++.++++++|.++.+.+.....+.. ....++.+..+++++++ .|+.|++-+| .+.|+.+|+|||
T Consensus 107 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~l~~~~~~~~l~~~~~~g~~~~~~~f~~----~~~s~~dA~y~s 176 (393)
T PRK10537 107 LKFLIGYCIVLLVALLIYRRDFDRSSLAAG------TLFAVISITSLLFYSTFGALYLGDGFSP----PIESLSTAFYFS 176 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHccccCc----CCCCHHHHHHhh
Confidence 344566667777777766655544422222 23333333445566666 4667754333 378999999999
Q ss_pred eeeeecc
Q psy15554 330 SLKISSF 336 (339)
Q Consensus 330 ~~t~~~~ 336 (339)
++|+|..
T Consensus 177 vvt~tTv 183 (393)
T PRK10537 177 IVTMSTV 183 (393)
T ss_pred heeeecc
Confidence 9999974
No 27
>PLN03223 Polycystin cation channel protein; Provisional
Probab=95.98 E-value=0.014 Score=63.31 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=60.8
Q ss_pred hhhHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeccCCCCccCCCCCCcccch
Q psy15554 250 ILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAI 326 (339)
Q Consensus 250 ~l~~lrilri~ri~kL~r~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~~~s~~~y~~E~~~~~~~~~~f~s~~~~~ 326 (339)
+..++-+++++|++|+.|+.+.++.|..+++++.++++.++++++++++.||.+.|++-|...+ .|+|+..++
T Consensus 1294 L~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF~IVF~AFAqLG~LLFGt~ve----~FSTf~sSL 1366 (1634)
T PLN03223 1294 LSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIFGMVFVGYAFIGHVIFGNASV----HFSDMTDSI 1366 (1634)
T ss_pred HHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch----hhcCHHHHH
Confidence 3445566778888888899999999999999999999999999999999999999998876433 477776654
No 28
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=95.37 E-value=0.04 Score=54.32 Aligned_cols=73 Identities=25% Similarity=0.399 Sum_probs=62.2
Q ss_pred hhhHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeccCCCCccCCCCCCcccch
Q psy15554 250 ILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAI 326 (339)
Q Consensus 250 ~l~~lrilri~ri~kL~r~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~~~s~~~y~~E~~~~~~~~~~f~s~~~~~ 326 (339)
+..+.-.+-.+|++|+.|+.+.+..+.++++++.+++....+++++.++.||.+.|.+-|+..+ +|+|++.++
T Consensus 299 l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~~----~f~s~~~s~ 371 (425)
T PF08016_consen 299 LLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYSE----DFSSFSSSL 371 (425)
T ss_pred HHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc----ccCCHHHHH
Confidence 3445556677888888999999999999999999999999999999999999999999976433 488888776
No 29
>KOG0499|consensus
Probab=94.54 E-value=0.53 Score=47.46 Aligned_cols=143 Identities=14% Similarity=0.126 Sum_probs=73.8
Q ss_pred CchhhhhhhHHHHHHHHHHHH-----hhhccCc--------chhhccccccchhhhhhhHHHHHHHHccccccchhHHHH
Q psy15554 88 HAAFFYVELACNAWFTFELLV-----RAVVSPN--------IFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFF 154 (339)
Q Consensus 88 ~~~l~~ie~~~~~iF~~E~~l-----rl~~a~~--------~~~y~~~~~niiDl~~ilp~~v~~~~~~~~~~~~~lr~l 154 (339)
-..+.+.|+.|.+++..|+++ ++.--++ |.+|+++--=-.|+++++|..+-...-+ ..+.+|
T Consensus 260 ~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G---~~p~wR-- 334 (815)
T KOG0499|consen 260 IHYWLIADYICDIIYLLDMLFIQPRLQFVRGGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFG---FNPMWR-- 334 (815)
T ss_pred chhhhhHHHHhhHHHHHHHhhhhhhheeeeCceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhc---cchhhh--
Confidence 345778999999999999864 1111111 5667777555689999999876654321 123333
Q ss_pred HhhhhhhcccccccCcchhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-Ccceeec----Ccc
Q psy15554 155 SIIRILRLFKLTRHSPGLKILIHT-----FKASAKELTLLVFFLVLGIVVFASLVYYAERLQVSP-NIFQFIR----SPV 224 (339)
Q Consensus 155 RllRllRilrl~r~~~~l~~l~~t-----l~~s~~~l~~l~~~~~i~v~iFa~~iy~~er~~~~~-~~~~f~~----~~~ 224 (339)
+=|.+|......-.+.+-.. +.+..+.++.+++.+ .+-|+.-|..-...+-+ +++-|.. +.-
T Consensus 335 ----~~R~lK~~sF~e~~~~Le~i~s~~y~~RV~rT~~Ymlyil----HinacvYY~~SayqglG~~rWVydg~Gn~YiR 406 (815)
T KOG0499|consen 335 ----ANRMLKYTSFFEFNHHLESIMSKAYIYRVIRTTGYLLYIL----HINACVYYWASAYQGLGTTRWVYDGEGNEYIR 406 (815)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHH----hhhHHHHHHHHhhcccccceeEEcCCCCceee
Confidence 33344444333322223222 223344455544444 33344322222211111 1222222 235
Q ss_pred ceeeeEEecccchhh-hhcc
Q psy15554 225 NVIDIIATLSFYTDI-LLQD 243 (339)
Q Consensus 225 al~~~i~tlttYgdi-~p~t 243 (339)
+.||++.|++|-|.. -|++
T Consensus 407 Cyyfa~kt~~tiG~~P~P~~ 426 (815)
T KOG0499|consen 407 CYYFAVKTLITIGGLPEPQT 426 (815)
T ss_pred ehhhHHHHHHHhcCCCCcch
Confidence 789999999885443 3443
No 30
>KOG1023|consensus
Probab=93.62 E-value=0.026 Score=56.20 Aligned_cols=74 Identities=43% Similarity=0.498 Sum_probs=49.1
Q ss_pred CcccchHHHHhHHHhhccccceeeccccchhh------------hHhhHhHHHHH-hhhheeeEEecccCCccccccCcc
Q psy15554 1 VVNFLNDLYTLFDRIIKGYDVYKVETIGDAYM------------VILAVTSVFFI-CVSVVSFALKTHPDMRVPTIRNSS 67 (339)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------------~~~~~~i~~~I-~ls~i~~~l~t~~~~~~~~~~~~~ 67 (339)
|||+|||+|+.||++++.|++|.+++..+.|. .+-+...+.+= .-.+-.+-+++.|..+ ...+
T Consensus 319 vv~~lNdlyt~Fd~ii~~~d~yKVetiGDaYmvvSglp~~n~~~H~~eia~msl~~~~~~~~f~i~H~P~~~----l~iR 394 (484)
T KOG1023|consen 319 VVTLLNDLYTTFDRIIDKHDVYKVETIGDAYMVVSGLPIRNGYRHAREIASMALGLRSFLESFSLPHRPWEK----LRLR 394 (484)
T ss_pred eeeeccchHHhhhhcccccCCeeEeccCcceeecccCceecHhHHHHHHHHHHHHHHHHHhccCCCCCCchh----hhee
Confidence 79999999999999999999999999988873 22333322222 2233344444444332 2466
Q ss_pred ccccCCCCccc
Q psy15554 68 FFISLDNSTAW 78 (339)
Q Consensus 68 ~~~~~~~~~~~ 78 (339)
.+.|+++..|+
T Consensus 395 ig~~sg~~~ag 405 (484)
T KOG1023|consen 395 IGFHSGPVVAG 405 (484)
T ss_pred eccccCCceec
Confidence 77777777665
No 31
>KOG4404|consensus
Probab=93.56 E-value=0.23 Score=46.38 Aligned_cols=103 Identities=10% Similarity=0.126 Sum_probs=65.4
Q ss_pred CccceeeeEEeccc--chhhhhcccccchhhhhHHHHH----HHhhhcccc--cCchHHHHHHHHHHHH---------HH
Q psy15554 222 SPVNVIDIIATLSF--YTDILLQDKVQQSDILEFFSII----RILRLFKLT--RHSPGLKILIHTFKAS---------AK 284 (339)
Q Consensus 222 ~~~al~~~i~tltt--Ygdi~p~t~~g~~~~l~~lril----ri~ri~kL~--r~~~~l~~L~~~~~~~---------~~ 284 (339)
.+-++|++.+.++| ||--.|.|..|| ++.++--+ -.+-+|... |-...++-+.+..+++ ..
T Consensus 81 F~GaFYFa~TVItTIGyGhstP~T~~GK--~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~~~r~~~~~r~~~~S~~ 158 (350)
T KOG4404|consen 81 FAGAFYFATTVITTIGYGHSTPSTDGGK--AFCMFYALVGIPLTLVMFQSIGERLNTFVAYILRRCRRRLGRRRWDVSVY 158 (350)
T ss_pred cCcceEEEEEEEeeeccCCCCCCCcCce--ehhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcHH
Confidence 45799999999999 999999999999 33332221 122222221 2222233333333332 22
Q ss_pred HHHHHHHHHHHHHHHHhhhhhe-eccCCCCccCCCCCCcccchheeeeeeecc
Q psy15554 285 ELTLLVFFLVLGIVVFASLVYY-AERLQTLDRLYEYSKLEIAIDYTSLKISSF 336 (339)
Q Consensus 285 ~l~~~~~~~~~~~~~~s~~~y~-~E~~~~~~~~~~f~s~~~~~ww~~~t~~~~ 336 (339)
.+..+.+.+.++++..|+.||- +|+ =|+.|+.|+-+||.|..
T Consensus 159 ~l~~i~~~~~~~~i~~gaa~fs~~E~----------Wsyfds~YyCFITltTI 201 (350)
T KOG4404|consen 159 NLVLILFTACILLICCGAAMFSSVEG----------WSYFDSYYYCFITLTTI 201 (350)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhcccC----------cchhhhhheeeeeeeec
Confidence 3667777777788888888885 332 24889999999999863
No 32
>KOG1420|consensus
Probab=93.48 E-value=0.16 Score=50.81 Aligned_cols=122 Identities=17% Similarity=0.194 Sum_probs=72.9
Q ss_pred HHHHhhhccCCCcceeecCccceeeeEEecccchhhhhcccccchhhhhHHHHHHHhhhcccccCchHHHHHHHHHHHHH
Q psy15554 204 VYYAERLQVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASA 283 (339)
Q Consensus 204 iy~~er~~~~~~~~~f~~~~~al~~~i~tlttYgdi~p~t~~g~~~~l~~lrilri~ri~kL~r~~~~l~~L~~~~~~~~ 283 (339)
.|+..|+..+.++..|.--..++.|...+=|.+..++.+-..- -+|.+|.+|+... ..-++-|---..++.
T Consensus 177 vyffirfiaasdklwf~lemys~vdfftippsfvsiyl~r~wl------glrflralrlmtv---pdilqylnilktsss 247 (1103)
T KOG1420|consen 177 VYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSFVSIYLNRSWL------GLRFLRALRLMTV---PDILQYLNILKTSSS 247 (1103)
T ss_pred HHHHHHHhhcccceeeeeehhhheeeeecCchheEEEeccchH------HHHHHHHHHhccH---HHHHHHHHHHhccch
Confidence 4567787788888777777778888777766655555432221 1344444444333 122222221122233
Q ss_pred HHHHHHHHHHHHHHHHHhhhhheeccCCCCccCCCCCC-----cccchheeeeeeecc
Q psy15554 284 KELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSK-----LEIAIDYTSLKISSF 336 (339)
Q Consensus 284 ~~l~~~~~~~~~~~~~~s~~~y~~E~~~~~~~~~~f~s-----~~~~~ww~~~t~~~~ 336 (339)
-+|.-++.+.....+..+-++.++|+...| .++|.+ ..++.|.-.||||..
T Consensus 248 irl~qlvsifisvwltaag~ihllensgdp--~~~f~n~hrltyw~cvyfl~vtmstv 303 (1103)
T KOG1420|consen 248 IRLVQLVSIFISVWLTAAGFIHLLENSGDP--WENFQNNHRLTYWECVYFLMVTMSTV 303 (1103)
T ss_pred hhHHHHHHHHHHHHHhhcceeehhhcCCCh--hHhccCcccchhhheeeeeEEEeeec
Confidence 345555566666778889999999987544 446665 456677778999864
No 33
>KOG4171|consensus
Probab=92.75 E-value=0.047 Score=55.67 Aligned_cols=32 Identities=81% Similarity=1.194 Sum_probs=30.1
Q ss_pred CcccchHHHHhHHHhhccccceeeccccchhh
Q psy15554 1 VVNFLNDLYTLFDRIIKGYDVYKVETIGDAYM 32 (339)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 32 (339)
|||+||++|+.||+++..|++|..+..++.|.
T Consensus 465 vV~~LN~lyt~fD~~i~~~~VYKVETIGDaYm 496 (671)
T KOG4171|consen 465 VVNMLNELYTRFDRIIDTHDVYKVETIGDAYM 496 (671)
T ss_pred HHHHHHHHHHHHHHhhcccCeEEEeeccchhe
Confidence 68999999999999999999999999998883
No 34
>KOG1418|consensus
Probab=91.25 E-value=0.18 Score=48.79 Aligned_cols=33 Identities=9% Similarity=0.194 Sum_probs=27.4
Q ss_pred ecCccceeeeEEeccc--chhhhhcccccchhhhhHH
Q psy15554 220 IRSPVNVIDIIATLSF--YTDILLQDKVQQSDILEFF 254 (339)
Q Consensus 220 ~~~~~al~~~i~tltt--Ygdi~p~t~~g~~~~l~~l 254 (339)
.+...++++..+++|| ||++.|.|..|| ++.++
T Consensus 114 W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr--~~~i~ 148 (433)
T KOG1418|consen 114 WSFSSALLFSITVITTIGYGNIAPRTDAGR--LFTIL 148 (433)
T ss_pred eecchhHhhhhheeeeccCCcccCCcCcch--hHHHH
Confidence 4566899999999999 999999999997 44444
No 35
>KOG0498|consensus
Probab=90.34 E-value=0.17 Score=52.70 Aligned_cols=114 Identities=17% Similarity=0.157 Sum_probs=56.2
Q ss_pred cceeeeEEeccc-chhhhhcc-----cccchhhhhHHHHHHHhhhcccccCchHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy15554 224 VNVIDIIATLSF-YTDILLQD-----KVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKE-LTLLVFFLVLG 296 (339)
Q Consensus 224 ~al~~~i~tltt-Ygdi~p~t-----~~g~~~~l~~lrilri~ri~kL~r~~~~l~~L~~~~~~~~~~-l~~~~~~~~~~ 296 (339)
+=++|+++++|. +.-+.-.. ..+......++...|+.|+.|+.++...+.--+....+..-. .+.++++.+++
T Consensus 165 wFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~ 244 (727)
T KOG0498|consen 165 WFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLA 244 (727)
T ss_pred hHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 456788888887 22221110 122223455555566666666655555544444443322222 22334444444
Q ss_pred HHHHhhhhheeccCCC---Ccc------------CCC----CCC------cccchheeeeeeeccc
Q psy15554 297 IVVFASLVYYAERLQT---LDR------------LYE----YSK------LEIAIDYTSLKISSFL 337 (339)
Q Consensus 297 ~~~~s~~~y~~E~~~~---~~~------------~~~----f~s------~~~~~ww~~~t~~~~~ 337 (339)
.=..|++-|++=...+ +.+ -++ |+- +-.|+||++.|+||..
T Consensus 245 sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~aLyw~l~tLstvG 310 (727)
T KOG0498|consen 245 SHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYNLSFTFGIYSLALKYVYALYWGLSTLSTVG 310 (727)
T ss_pred HHHHHHHHHHHHhcccccCccccccccccccccccCcccccccchhHHHHHHHHHHHHhhHhhhcc
Confidence 4566666666422111 111 001 222 2248999999999964
No 36
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=90.16 E-value=2.2 Score=45.20 Aligned_cols=116 Identities=13% Similarity=0.120 Sum_probs=58.5
Q ss_pred hhhhhHHHHHHHHHHHHhhhccCcchhhccccccchhhhhhhHHHHHHHHcc--------------------ccc--cch
Q psy15554 92 FYVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQD--------------------KVQ--QSD 149 (339)
Q Consensus 92 ~~ie~~~~~iF~~E~~lrl~~a~~~~~y~~~~~niiDl~~ilp~~v~~~~~~--------------------~~~--~~~ 149 (339)
..+.......+..+-...++. .....|+++.||++|+....-+...+.... ... ...
T Consensus 392 e~~~~~~~~~~~~~e~~~~~~-~g~~~y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (743)
T TIGR00870 392 EMLIVTWVDGLRLGEEKLIWL-GGIFEYIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLRFDPTLIEEA 470 (743)
T ss_pred hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCchhHHHH
Confidence 333344444455555445554 234579999999999955433322211110 000 001
Q ss_pred hHHHHHhhhhhhcccccccCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q psy15554 150 ILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAK-ELTLLVFFLVLGIVVFASLVYYAE 208 (339)
Q Consensus 150 ~lr~lRllRllRilrl~r~~~~l~~l~~tl~~s~~-~l~~l~~~~~i~v~iFa~~iy~~e 208 (339)
.+-+.-++..+|++++.|..+.+-.+..++.+... .+...+++..++++-|+...+...
T Consensus 471 l~a~~~~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~ 530 (743)
T TIGR00870 471 LFAFALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLY 530 (743)
T ss_pred HHHHHHHHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223334445555555544444445555666666 666665666666666776654443
No 37
>KOG3599|consensus
Probab=88.06 E-value=0.62 Score=49.44 Aligned_cols=78 Identities=14% Similarity=0.277 Sum_probs=60.7
Q ss_pred hHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeccCCCCccCCC-CCCcccchheee
Q psy15554 252 EFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYE-YSKLEIAIDYTS 330 (339)
Q Consensus 252 ~~lrilri~ri~kL~r~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~~~s~~~y~~E~~~~~~~~~~-f~s~~~~~ww~~ 330 (339)
.+.-.+-.++++|+.|+.+.++.+.+++.++.+++..+.++.++..+.++.+.|.+-|. +-+++.+ ..|+...++|.+
T Consensus 558 a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~-~v~~f~~f~~s~~t~~~~~~ 636 (798)
T KOG3599|consen 558 AFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGN-QVSDFRTFVASIVTLLRYIL 636 (798)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ccCChHHHHHHHHHHHHHHh
Confidence 34455667888999999999999999999999999999999999999999999999965 3333222 234444555544
No 38
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=87.19 E-value=0.2 Score=36.99 Aligned_cols=38 Identities=13% Similarity=0.308 Sum_probs=27.0
Q ss_pred HHHHHHHHhhhhheeccCCCCccCCCCCCcccchheeeeeeecc
Q psy15554 293 LVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSF 336 (339)
Q Consensus 293 ~~~~~~~~s~~~y~~E~~~~~~~~~~f~s~~~~~ww~~~t~~~~ 336 (339)
+++.++.+|.+.|..+++ ++ -.|..+++||+.+|+|..
T Consensus 2 ~~~~~l~~~~~~~~~~~~--~~----~~~~~da~yfs~~t~tTv 39 (79)
T PF07885_consen 2 ILLLVLAFGAIFFYISEG--SE----KWSFIDALYFSFVTITTV 39 (79)
T ss_dssp HHHHHHHHHHHHHHHTTS--SS----TTSHHHHHHHHHHHHTT-
T ss_pred EEEeeeHHHHHHHHHHHh--cc----cCCHHHHHHHHHHHHhcc
Confidence 345667777777777422 22 478999999999999874
No 39
>KOG3193|consensus
Probab=86.21 E-value=4.4 Score=40.68 Aligned_cols=50 Identities=18% Similarity=0.086 Sum_probs=34.6
Q ss_pred HHhhhccCCCcceeecCccceeeeEEeccc--chhhhhcccccchhhhhHHHHH
Q psy15554 206 YAERLQVSPNIFQFIRSPVNVIDIIATLSF--YTDILLQDKVQQSDILEFFSII 257 (339)
Q Consensus 206 ~~er~~~~~~~~~f~~~~~al~~~i~tltt--Ygdi~p~t~~g~~~~l~~lril 257 (339)
-++++..+..+ -.+.+.+.|++++|++| |||.+|.-...+.-++-++++.
T Consensus 204 ~i~h~qra~~k--~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icva 255 (1087)
T KOG3193|consen 204 SIEHLQRARGK--RIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVA 255 (1087)
T ss_pred hHHHHHHccCc--eeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHH
Confidence 35555555544 45677899999999999 9999998766654444444443
No 40
>KOG3684|consensus
Probab=69.81 E-value=5.3 Score=39.30 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEeccc--chhhhhcccccch
Q psy15554 191 FFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSF--YTDILLQDKVQQS 248 (339)
Q Consensus 191 ~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tltt--Ygdi~p~t~~g~~ 248 (339)
.+.+..+++-+-..-.+||....++ .-.+...++|...+|.-+ |||++|+|.-||+
T Consensus 259 vftl~~Wii~sW~~~~cER~~~~~~--~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~ 316 (489)
T KOG3684|consen 259 VFTLSLWIIASWMLRQCERYHDSQD--VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRG 316 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchh--hHHHHHhhHHHHHHHHhhcccCcccCCccccch
Confidence 3333444444444446777433333 223344677777777666 9999999999983
No 41
>KOG3614|consensus
Probab=56.43 E-value=56 Score=36.64 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhhccCc-----c-hhhccccccchhhhhhhHHHHHHHHc
Q psy15554 100 AWFTFELLVRAVVSPN-----I-FQFIRSPVNVIDIIATLSFYTDILLQ 142 (339)
Q Consensus 100 ~iF~~E~~lrl~~a~~-----~-~~y~~~~~niiDl~~ilp~~v~~~~~ 142 (339)
.-+++|-+=+.+...+ | .-|+.+.||+.|.+++.-+.+.....
T Consensus 833 ftl~~E~vRq~~~se~~~l~~kv~v~f~d~wN~~d~~ai~~F~vG~~~R 881 (1381)
T KOG3614|consen 833 FTLFLEEVRQIFISESGLLPQKVRVYFADFWNLIDLLAILLFLVGPVLR 881 (1381)
T ss_pred HHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhheeE
Confidence 3445566666655443 1 34999999999999999988887654
No 42
>KOG3609|consensus
Probab=56.24 E-value=61 Score=34.52 Aligned_cols=90 Identities=13% Similarity=0.154 Sum_probs=49.2
Q ss_pred hhhhhHHHHHHH---HHHHHhhhccCcchhhccccccchhhhhhhHHHHHHHHcc-------------------------
Q psy15554 92 FYVELACNAWFT---FELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQD------------------------- 143 (339)
Q Consensus 92 ~~ie~~~~~iF~---~E~~lrl~~a~~~~~y~~~~~niiDl~~ilp~~v~~~~~~------------------------- 143 (339)
..+|+....+-. .|=+-.+|. .+...|++.+||++|+..+.-+...+...-
T Consensus 384 ~~vE~li~~wV~G~iw~E~k~lw~-~G~~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ 462 (822)
T KOG3609|consen 384 QALEILIYLWVMGLIWEEIKELWR-VGRDGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPS 462 (822)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHH
Confidence 345554443332 233344553 467889999999999977655443333221
Q ss_pred --ccccchhHHHHHhhhhhhcccccccCcchhH-HHHHHHHH
Q psy15554 144 --KVQQSDILEFFSIIRILRLFKLTRHSPGLKI-LIHTFKAS 182 (339)
Q Consensus 144 --~~~~~~~lr~lRllRllRilrl~r~~~~l~~-l~~tl~~s 182 (339)
..+....--++-.+|++-++..-.+...++. +++.+.+.
T Consensus 463 ll~E~lfAiA~V~S~lrl~~i~t~n~~lGPlqISlGrmv~Di 504 (822)
T KOG3609|consen 463 LLAEGLFAIANVLSFLKLFYIFTMNPSLGPLQISLGRMVGDI 504 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHH
Confidence 0111223344555666677777777666665 44444433
No 43
>KOG0500|consensus
Probab=46.84 E-value=80 Score=31.68 Aligned_cols=44 Identities=14% Similarity=0.334 Sum_probs=26.7
Q ss_pred eeecCccceeeeEEeccc-chhhhhcccccchhhhhHHHHHHHhhhccc
Q psy15554 218 QFIRSPVNVIDIIATLSF-YTDILLQDKVQQSDILEFFSIIRILRLFKL 265 (339)
Q Consensus 218 ~f~~~~~al~~~i~tltt-Ygdi~p~t~~g~~~~l~~lrilri~ri~kL 265 (339)
+|..+..-..|+++.+|+ |.-+.+.+. ...|..|++|+-|++..
T Consensus 70 hY~~s~~f~lD~l~liP~D~l~~~~~~~----~~~r~nRllk~yRl~~F 114 (536)
T KOG0500|consen 70 HYVHSTQFKLDVLSLIPLDLLLFKDGSA----SLERLNRLLKIYRLFEF 114 (536)
T ss_pred HHHHhhhhhhhhhhhcchhHHhhcCCcc----hHHHHHHHHHHHHHHHH
Confidence 455555667899999999 555544332 24455565555555544
No 44
>KOG0510|consensus
Probab=44.09 E-value=31 Score=36.65 Aligned_cols=133 Identities=8% Similarity=0.093 Sum_probs=70.5
Q ss_pred hhhhhhHHHHHHHHHHHHhhhccCcchhhccccccchhhhhhhHHHHHHHHcc--ccccc-hhHHHHHh-hhhhhccccc
Q psy15554 91 FFYVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQD--KVQQS-DILEFFSI-IRILRLFKLT 166 (339)
Q Consensus 91 l~~ie~~~~~iF~~E~~lrl~~a~~~~~y~~~~~niiDl~~ilp~~v~~~~~~--~~~~~-~~lr~lRl-lRllRilrl~ 166 (339)
+..+-+...+++..-.+..++. .|.+|+.+.-|++|-+.....++...... ..... ..+..+-+ +-.++++-++
T Consensus 565 ~~ili~~~i~~~~~~E~iQifq--qk~~Y~~~i~Nimew~iyts~li~v~~~~~~~~~~~Q~~laa~aV~l~W~nllLmi 642 (929)
T KOG0510|consen 565 CMILIFTSIILGILRECIQIFQ--QKRHYFMDIENIMEWFIYTSALITVYPLFFEITAHLQWVLAAFAVLLGWMNLLLMI 642 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhHHHHHHHHHhhhhheeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555664 67999999999999755433322211110 00000 11122211 3345556666
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeE
Q psy15554 167 RHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDII 230 (339)
Q Consensus 167 r~~~~l~~l~~tl~~s~~~l~~l~~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i 230 (339)
+..+.+......+....+.+...+....+.++-|+.-+|.... ...+|.+.|++..-..
T Consensus 643 ~~~p~~gIfvvM~~~I~ktflk~f~vfs~lliaF~lsFYVll~-----~~~eFs~p~ms~l~t~ 701 (929)
T KOG0510|consen 643 GRFPVFGIFVVMLEVILKTFLKSFMVFSILLIAFGLSFYVLLN-----KSSEFSNPFMSKLETF 701 (929)
T ss_pred ccCCccceehHHHHHHHHHHHHHHHHHHHHHHHhhhhheeeec-----CCCCcCCCcchhhhhH
Confidence 6666666655556666666666555555666667777655443 2224666666655443
No 45
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=42.92 E-value=24 Score=37.35 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=41.7
Q ss_pred hhhHHHHHHHhhhcccccCchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhee
Q psy15554 250 ILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAK-ELTLLVFFLVLGIVVFASLVYYA 307 (339)
Q Consensus 250 ~l~~lrilri~ri~kL~r~~~~l~~L~~~~~~~~~-~l~~~~~~~~~~~~~~s~~~y~~ 307 (339)
++.+.-+++.+|++.+.|..+.+.-+..++++... .+..++++.++.++-||...|.+
T Consensus 471 l~a~~~~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l 529 (743)
T TIGR00870 471 LFAFALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQL 529 (743)
T ss_pred HHHHHHHHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666667777888888877 88888888888888888877766
No 46
>KOG1418|consensus
Probab=31.82 E-value=24 Score=33.92 Aligned_cols=28 Identities=11% Similarity=0.031 Sum_probs=24.1
Q ss_pred ecCccceeeeEEeccc--chhhhhcccccc
Q psy15554 220 IRSPVNVIDIIATLSF--YTDILLQDKVQQ 247 (339)
Q Consensus 220 ~~~~~al~~~i~tltt--Ygdi~p~t~~g~ 247 (339)
.+...++|+.+++++| |||++|.+..++
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~ 270 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGR 270 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcce
Confidence 4455899999999999 999999997765
No 47
>KOG4404|consensus
Probab=29.55 E-value=63 Score=30.64 Aligned_cols=22 Identities=14% Similarity=0.010 Sum_probs=19.3
Q ss_pred CccceeeeEEeccc--chhhhhcc
Q psy15554 222 SPVNVIDIIATLSF--YTDILLQD 243 (339)
Q Consensus 222 ~~~al~~~i~tltt--Ygdi~p~t 243 (339)
++++.|+-.+|++| +||.++-.
T Consensus 187 yfds~YyCFITltTIGFGDyValQ 210 (350)
T KOG4404|consen 187 YFDSYYYCFITLTTIGFGDYVALQ 210 (350)
T ss_pred hhhhhheeeeeeeeccccchhhhc
Confidence 55999999999999 99999843
No 48
>PF08196 UL2: UL2 protein; InterPro: IPR013269 This entry contains Orf UL2 of Human cytomegalovirus (HHV-5) (Human herpesvirus 5), which is a short protein of unknown function [].
Probab=29.07 E-value=24 Score=23.81 Aligned_cols=22 Identities=14% Similarity=0.082 Sum_probs=15.6
Q ss_pred hhhheeccCCCCccCCCCCCcccc
Q psy15554 302 SLVYYAERLQTLDRLYEYSKLEIA 325 (339)
Q Consensus 302 ~~~y~~E~~~~~~~~~~f~s~~~~ 325 (339)
.-+..+|.+ +++..+|+|+|.+
T Consensus 6 v~ilivedd--d~~ypsfgtlpas 27 (60)
T PF08196_consen 6 VSILIVEDD--DDAYPSFGTLPAS 27 (60)
T ss_pred eEEEEEecC--CCcCCCCCccchH
Confidence 345678865 3556789999975
No 49
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=24.12 E-value=2.2e+02 Score=27.80 Aligned_cols=77 Identities=16% Similarity=0.110 Sum_probs=56.3
Q ss_pred ccchhhhhcccccchhhhhHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeccC
Q psy15554 234 SFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERL 310 (339)
Q Consensus 234 ttYgdi~p~t~~g~~~~l~~lrilri~ri~kL~r~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~~~s~~~y~~E~~ 310 (339)
+||+.+...-...-....+..|-+-...--|...|...=|-++++++.+.-++..++++.-+--++=+.++++.|-.
T Consensus 197 ttY~PlllVlvaNPiLy~~a~~~V~~~lk~r~g~yT~~ER~l~~~IK~kFf~I~lVF~iCWlpNIINg~LL~~l~~~ 273 (405)
T PF02101_consen 197 TTYIPLLLVLVANPILYIKAVRAVASLLKGRQGIYTENERRLGAQIKIKFFKIMLVFYICWLPNIINGSLLFYLEMQ 273 (405)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHhhcc
Confidence 34777666543332223344444444445567889999999999999999999999998888889999999998853
Done!