Query psy15554
Match_columns 339
No_of_seqs 247 out of 2185
Neff 8.1
Searched_HMMs 29240
Date Sat Aug 17 00:16:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15554.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15554hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r9r_B Paddle chimera voltage 100.0 1.3E-30 4.5E-35 259.4 10.3 255 15-281 164-430 (514)
2 1orq_C Potassium channel; volt 99.9 1.8E-25 6.3E-30 199.5 5.6 210 33-281 8-220 (223)
3 3beh_A MLL3241 protein; transm 99.9 2.7E-25 9.4E-30 211.6 4.2 213 30-285 5-220 (355)
4 3rvy_A ION transport protein; 99.9 4.6E-24 1.6E-28 197.3 2.5 177 32-246 29-209 (285)
5 4dxw_A Navrh, ION transport pr 99.9 2.8E-23 9.7E-28 186.1 2.2 179 30-243 9-189 (229)
6 1ors_C Potassium channel; volt 99.8 1.5E-21 5.1E-26 160.2 2.7 125 32-186 5-129 (132)
7 2r9r_B Paddle chimera voltage 99.7 4.1E-17 1.4E-21 162.2 5.9 141 191-336 243-390 (514)
8 2kyh_A KVAP, voltage-gated pot 99.6 9.7E-17 3.3E-21 133.5 0.4 119 33-181 21-139 (147)
9 4dxw_A Navrh, ION transport pr 99.5 3.4E-15 1.2E-19 133.3 2.2 135 191-336 46-180 (229)
10 3rvy_A ION transport protein; 99.5 2.1E-15 7.3E-20 139.1 -0.1 131 191-336 65-195 (285)
11 1orq_C Potassium channel; volt 99.5 1.9E-14 6.4E-19 127.9 3.8 137 191-336 43-180 (223)
12 3beh_A MLL3241 protein; transm 99.5 6.3E-15 2.1E-19 139.9 0.5 128 196-336 48-176 (355)
13 2a9h_A Voltage-gated potassium 99.4 1.2E-13 4.1E-18 115.8 1.4 106 124-259 15-122 (155)
14 2ih3_C Voltage-gated potassium 99.2 9E-12 3.1E-16 100.3 4.5 116 149-284 2-119 (122)
15 2a9h_A Voltage-gated potassium 99.1 2.2E-11 7.5E-16 102.0 1.2 85 224-336 15-99 (155)
16 1ors_C Potassium channel; volt 99.1 6.1E-11 2.1E-15 96.7 3.8 90 191-287 41-130 (132)
17 2ih3_C Voltage-gated potassium 98.9 4E-10 1.4E-14 90.5 1.4 74 250-336 3-76 (122)
18 2k1e_A Water soluble analogue 98.4 1.8E-07 6E-12 72.7 5.2 74 185-263 7-82 (103)
19 2kyh_A KVAP, voltage-gated pot 98.2 2.9E-07 9.9E-12 76.1 1.1 87 191-284 56-142 (147)
20 3ukm_A Potassium channel subfa 98.1 3.6E-07 1.2E-11 83.2 0.1 27 221-247 93-121 (280)
21 3um7_A Potassium channel subfa 98.1 3.6E-07 1.2E-11 84.4 -0.2 38 221-260 115-154 (309)
22 3eff_K Voltage-gated potassium 98.1 8.8E-07 3E-11 72.4 1.4 71 185-260 7-79 (139)
23 2k1e_A Water soluble analogue 97.9 7.7E-06 2.6E-10 63.3 3.9 52 282-336 4-55 (103)
24 4h33_A LMO2059 protein; bilaye 97.8 2.6E-06 9E-11 69.5 0.4 56 192-257 22-79 (137)
25 1p7b_A Integral membrane chann 97.5 3E-05 1E-09 72.4 1.6 71 175-247 52-124 (333)
26 2q67_A Potassium channel prote 97.4 5.5E-05 1.9E-09 59.6 2.0 56 192-258 29-86 (114)
27 1p7b_A Integral membrane chann 97.4 0.0001 3.4E-09 68.9 4.1 64 271-336 48-111 (333)
28 3ouf_A Potassium channel prote 97.3 0.0001 3.6E-09 56.2 2.3 62 191-263 11-74 (97)
29 3eff_K Voltage-gated potassium 97.3 8E-05 2.7E-09 60.6 1.7 51 283-336 5-55 (139)
30 1xl4_A Inward rectifier potass 97.2 8.2E-05 2.8E-09 68.6 1.3 79 176-259 39-120 (301)
31 3ldc_A Calcium-gated potassium 97.1 0.00018 6.3E-09 53.0 1.9 38 221-260 28-67 (82)
32 3vou_A ION transport 2 domain 97.1 0.00022 7.4E-09 58.7 2.5 59 191-260 31-91 (148)
33 2qks_A KIR3.1-prokaryotic KIR 97.0 0.00027 9.2E-09 65.7 3.1 81 171-258 29-115 (321)
34 1xl4_A Inward rectifier potass 96.9 0.00021 7.1E-09 65.9 1.1 59 275-336 38-97 (301)
35 4h33_A LMO2059 protein; bilaye 96.8 0.00021 7.3E-09 58.0 0.5 44 285-336 15-58 (137)
36 3pjs_K KCSA, voltage-gated pot 96.7 3.9E-05 1.3E-09 64.5 -5.3 59 195-258 44-104 (166)
37 2qks_A KIR3.1-prokaryotic KIR 96.4 0.00079 2.7E-08 62.5 1.3 61 271-336 29-93 (321)
38 2q67_A Potassium channel prote 95.5 0.0049 1.7E-07 48.2 1.9 40 288-336 25-64 (114)
39 4gx0_A TRKA domain protein; me 95.4 0.0097 3.3E-07 59.2 4.2 37 221-259 51-89 (565)
40 3pjs_K KCSA, voltage-gated pot 94.9 0.0007 2.4E-08 56.8 -5.1 46 288-336 37-82 (166)
41 3vou_A ION transport 2 domain 94.2 0.012 4.1E-07 48.1 0.9 56 272-336 11-67 (148)
42 3sya_A G protein-activated inw 94.1 0.023 8E-07 52.8 2.9 30 218-247 88-121 (340)
43 3ukm_A Potassium channel subfa 94.1 0.023 7.9E-07 51.4 2.8 26 222-247 202-229 (280)
44 3um7_A Potassium channel subfa 93.9 0.028 9.6E-07 51.6 3.0 26 222-247 225-252 (309)
45 1lnq_A MTHK channels, potassiu 93.4 0.00059 2E-08 63.5 -9.5 35 221-257 45-81 (336)
46 3ouf_A Potassium channel prote 93.0 0.019 6.6E-07 43.4 0.2 43 285-336 5-47 (97)
47 3ldc_A Calcium-gated potassium 92.3 0.031 1.1E-06 40.8 0.5 31 296-336 13-43 (82)
48 3spc_A Inward-rectifier K+ cha 90.8 0.11 3.7E-06 48.4 2.6 29 219-247 92-124 (343)
49 2lcm_A Voltage-dependent N-typ 90.4 0.082 2.8E-06 30.3 0.9 25 149-173 4-28 (28)
50 1lnq_A MTHK channels, potassiu 89.1 0.0095 3.3E-07 55.2 -6.1 54 273-336 6-60 (336)
51 4gx0_A TRKA domain protein; me 87.6 0.19 6.7E-06 49.7 1.9 37 292-336 30-66 (565)
52 3spc_A Inward-rectifier K+ cha 86.8 0.26 8.9E-06 45.8 2.2 65 272-336 32-109 (343)
53 3sya_A G protein-activated inw 84.3 0.58 2E-05 43.4 3.2 65 272-336 30-106 (340)
54 1qg9_A Protein (sodium channel 61.0 4.3 0.00015 22.6 1.6 20 94-113 2-21 (26)
55 4f4l_A ION transport protein; 40.1 6.4 0.00022 30.0 0.2 38 286-326 6-43 (112)
56 2k44_A Hsapbk, K+-channel volt 35.8 5 0.00017 22.5 -0.8 11 154-164 15-25 (28)
57 3uvj_A Guanylate cyclase solub 20.3 20 0.0007 30.5 -0.2 35 1-35 37-71 (225)
No 1
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.96 E-value=1.3e-30 Score=259.36 Aligned_cols=255 Identities=32% Similarity=0.493 Sum_probs=200.4
Q ss_pred hhccccceeeccccchhhhHhhHhHHHHHhhhheeeEEecccCCccccccCcccc---ccCCCCcccccccccCCCCchh
Q psy15554 15 IIKGYDVYKVETIGDAYMVILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSSFF---ISLDNSTAWVLHKEKTDPHAAF 91 (339)
Q Consensus 15 ~~~~~~~~~~~~~~s~~~~~~~~~i~~~I~ls~i~~~l~t~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l 91 (339)
+++..+.+.|+|.+|.++++|+.+++++|++|++.+++||.|+++.+.....+.. ...++++ ....+.......+
T Consensus 164 ~r~~lw~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l 241 (514)
T 2r9r_B 164 FQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQST--IGYQQSTSFTDPF 241 (514)
T ss_dssp SHHHHHHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHHH--HSSCCCTTCCCHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccccccccc--ccccccchhhhHH
Confidence 4455556678999999999999999999999999999999887643211000000 0000000 0111234467789
Q ss_pred hhhhhHHHHHHHHHHHHhhhccCcchhhccccccchhhhhhhHHHHHHHHccc-------cccchhHHHHHhhhhhhccc
Q psy15554 92 FYVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDK-------VQQSDILEFFSIIRILRLFK 164 (339)
Q Consensus 92 ~~ie~~~~~iF~~E~~lrl~~a~~~~~y~~~~~niiDl~~ilp~~v~~~~~~~-------~~~~~~lr~lRllRllRilr 164 (339)
..+|.+|+++|++|+++|+++++.|.+|++++||++|+++++|+++.+..... ......+|++|++|++|++|
T Consensus 242 ~~ie~i~~~iFtiE~ilR~~~~~~k~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~lrvlRllRvlRilk 321 (514)
T 2r9r_B 242 FIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFK 321 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSSSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHHHHHHGGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988776421 11245789999999999999
Q ss_pred ccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEeccc--chhhhhc
Q psy15554 165 LTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSF--YTDILLQ 242 (339)
Q Consensus 165 l~r~~~~l~~l~~tl~~s~~~l~~l~~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tltt--Ygdi~p~ 242 (339)
+.|+.++++.+..++..+.+++..+++++++++.+||+.+|+.|+ ..++. .|.+.++++||+++|+|| |||+.|.
T Consensus 322 L~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~--~~~~~-~F~s~~~a~y~~~vT~TTvGYGDi~P~ 398 (514)
T 2r9r_B 322 LSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEA--DERDS-QFPSIPDAFWWAVVSMTTVGYGDMVPT 398 (514)
T ss_dssp GGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCTTC-SCSSHHHHHHHHHHHHTTCCCSSSCCC
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeec--cCCCc-cccchhhhhheeeeEEEecccCCCCCC
Confidence 999999999999999999999998888888889999999988887 33444 688999999999999999 9999999
Q ss_pred ccccchhhhhHHHHHHHhhhcccccCchHHHHHHHHHHH
Q psy15554 243 DKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKA 281 (339)
Q Consensus 243 t~~g~~~~l~~lrilri~ri~kL~r~~~~l~~L~~~~~~ 281 (339)
+..|+ ++.++.++-++-++.+ .+.++...+.+
T Consensus 399 t~~gr--~f~~~~~l~G~~~l~l-----~iavI~~~f~~ 430 (514)
T 2r9r_B 399 TIGGK--IVGSLCAIAGVLTIAL-----PVPVIVSNFNY 430 (514)
T ss_dssp SHHHH--HHHHHHHHHHHHHHHT-----THHHHHHHHHH
T ss_pred CcchH--hhehhHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 98887 6777777777777766 34555554444
No 2
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.91 E-value=1.8e-25 Score=199.50 Aligned_cols=210 Identities=12% Similarity=0.168 Sum_probs=154.1
Q ss_pred hHhhHhHHHHHhhhheeeEEecccCCccccccCccccccCCCCcccccccccCCCCchhhhhhhHHHHHHHHHHHHhhhc
Q psy15554 33 VILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSSFFISLDNSTAWVLHKEKTDPHAAFFYVELACNAWFTFELLVRAVV 112 (339)
Q Consensus 33 ~~~~~~i~~~I~ls~i~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~~~~iF~~E~~lrl~~ 112 (339)
+.++..+.+++++|++..++|+.++. +.+.++.+..+|.++.++|++|+++|+++
T Consensus 8 ~~f~~~i~~lil~~~~~~~~~~~~~~-------------------------~~~~~~~l~~~d~~~~~iF~~e~~lr~~~ 62 (223)
T 1orq_C 8 PLVELGVSYAALLSVIVVVVECTMQL-------------------------SGEYLVRLYLVDLILVIILWADYAYRAYK 62 (223)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHH-------------------------TTCTTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHhccc-------------------------ChhhhhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34899999999999999999985432 23456678999999999999999999999
Q ss_pred cCcchhhccccccchhhhhhhHHHHHHHHccccccchhHHHHHhhhhhhcccccccC-cchhHHHHHHHHHHHHHHHHHH
Q psy15554 113 SPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHS-PGLKILIHTFKASAKELTLLVF 191 (339)
Q Consensus 113 a~~~~~y~~~~~niiDl~~ilp~~v~~~~~~~~~~~~~lr~lRllRllRilrl~r~~-~~l~~l~~tl~~s~~~l~~l~~ 191 (339)
+++|++|+++ |++|+++++|+++....+...+..+.+|.+|++|++|++|+.+.. +..+.+...++. .++.....
T Consensus 63 ~~~~~~y~~~--~iiDllailP~~~~~~~~~~~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~--~~l~~~~~ 138 (223)
T 1orq_C 63 SGDPAGYVKK--TLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADK--IRFYHLFG 138 (223)
T ss_dssp TSCHHHHHHH--HHHHCTTHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHH--HHHHHHHH
T ss_pred cccHHHHHHH--hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 9999999998 899999999998776422111112456777777777777766533 334455544443 23555556
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEeccc--chhhhhcccccchhhhhHHHHHHHhhhcccccCc
Q psy15554 192 FLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSF--YTDILLQDKVQQSDILEFFSIIRILRLFKLTRHS 269 (339)
Q Consensus 192 ~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tltt--Ygdi~p~t~~g~~~~l~~lrilri~ri~kL~r~~ 269 (339)
.....++++++.+|+.|+ ..+++ ++.+.++++||+++|++| |||+.|.|..|| .+.++.++-+.-++.+
T Consensus 139 ~~~~~~~~~~~~~~~~e~--~~~~~-~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~--~~~~~~~~~G~~~~~~---- 209 (223)
T 1orq_C 139 AVMLTVLYGAFAIYIVEY--PDPNS-SIKSVFDALWWAVVTATTVGYGDVVPATPIGK--VIGIAVMLTGISALTL---- 209 (223)
T ss_dssp HHHHHHHHHHHHHHHTTS--SSTTC-SCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHH--HHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHh--CCcCC-CcCcchhHHHhHHhHHhccCCCCCCCCCHhHH--HHHHHHHHHHHHHHHH----
Confidence 666777788888888887 34444 577889999999999999 999999998887 6666666666655544
Q ss_pred hHHHHHHHHHHH
Q psy15554 270 PGLKILIHTFKA 281 (339)
Q Consensus 270 ~~l~~L~~~~~~ 281 (339)
....+++.+.+
T Consensus 210 -~i~~i~~~~~~ 220 (223)
T 1orq_C 210 -LIGTVSNMFQK 220 (223)
T ss_dssp -HHHHHHHHHHH
T ss_pred -HHHHHHHHHHH
Confidence 34445444443
No 3
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.90 E-value=2.7e-25 Score=211.62 Aligned_cols=213 Identities=20% Similarity=0.203 Sum_probs=171.0
Q ss_pred hhhhHhhHhHHHHHhhhheeeEEecccCCccccccCccccccCCCCcccccccccCCCCchhhhhhhHHHHHHHHHHHHh
Q psy15554 30 AYMVILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSSFFISLDNSTAWVLHKEKTDPHAAFFYVELACNAWFTFELLVR 109 (339)
Q Consensus 30 ~~~~~~~~~i~~~I~ls~i~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~~~~iF~~E~~lr 109 (339)
|.++.++.+++++|++|++.++++|.|+.+.+ ....++.++.++..+|++|+.+|
T Consensus 5 p~s~~f~~~~~~~i~ls~~~~~~~t~~~~~~~-------------------------~~~~~~~~~~~~~~~f~~e~~~r 59 (355)
T 3beh_A 5 PFLRIYAPLNAVLAAPGLLAVAALTIPDMSGR-------------------------SRLALAALLAVIWGAYLLQLAAT 59 (355)
T ss_dssp --CCSSSSHHHHHHHHHHHHHHHHTSSSCCHH-------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHcccchhhh-------------------------HHHHHHHHHhHHHHHHHHHHHHh
Confidence 44556899999999999999999997765321 22356778888888899999999
Q ss_pred hhccCcchhhccccccchhhhhh-hHHHHHHHHccccccchhHHHHHhhhhhhcccccccCcchhHHHHHHHHHHHHHHH
Q psy15554 110 AVVSPNIFQFIRSPVNVIDIIAT-LSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTL 188 (339)
Q Consensus 110 l~~a~~~~~y~~~~~niiDl~~i-lp~~v~~~~~~~~~~~~~lr~lRllRllRilrl~r~~~~l~~l~~tl~~s~~~l~~ 188 (339)
++++++|.+|++++||++|++++ +|++.... ..++.+|++|++|++|+.|+.++++.+..++..+.+++..
T Consensus 60 ~~~~~~~~~~~~~~~~i~Dl~~i~~p~~~~~~--------~~~~~~r~lr~~R~lrl~r~~~~~~~l~~~l~~~~~~l~~ 131 (355)
T 3beh_A 60 LLKRRAGVVRDRTPKIAIDVLAVLVPLAAFLL--------DGSPDWSLYCAVWLLKPLRDSTFFPVLGRVLANEARNLIG 131 (355)
T ss_dssp HHCCCSCSSCCCHHHHHHHHHHHHHHHHHHHS--------CCSGGGGGGGGGGGSHHHHTCSSHHHHHHHHHHTHHHHHH
T ss_pred cccccccceeccCcchHHHHHHHHHHHHHHHh--------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888899999999999999 57665432 2346788899999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEeccc--chhhhhcccccchhhhhHHHHHHHhhhcccc
Q psy15554 189 LVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSF--YTDILLQDKVQQSDILEFFSIIRILRLFKLT 266 (339)
Q Consensus 189 l~~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tltt--Ygdi~p~t~~g~~~~l~~lrilri~ri~kL~ 266 (339)
........++++|+.+|+.|+ +..| . .|.+.++++||+++|++| |||+.|.|..|+ ++.++.++-++-++.+
T Consensus 132 ~~~~~~~~~~~~a~~~~~~e~-~~~~-~-~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~--~~~~~~~~~g~~~~~~- 205 (355)
T 3beh_A 132 VTTLFGVVLFAVALAAYVIER-DIQP-E-KFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGR--VLAGAVMMSGIGIFGL- 205 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TTCH-H-HHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHH--HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHhhc-CCCC-c-ccccHHHHHHHHHhheeecCCCCCCCCChhHH--HHHHHHHHHHHHHHHH-
Confidence 888888888999999999988 2223 2 588889999999999999 999999999887 6777777777766665
Q ss_pred cCchHHHHHHHHHHHHHHH
Q psy15554 267 RHSPGLKILIHTFKASAKE 285 (339)
Q Consensus 267 r~~~~l~~L~~~~~~~~~~ 285 (339)
....+++.+.+..++
T Consensus 206 ----~~~~i~~~~~~~~~~ 220 (355)
T 3beh_A 206 ----WAGILATGFYQEVRR 220 (355)
T ss_dssp ----HHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHH
Confidence 456666666655443
No 4
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.88 E-value=4.6e-24 Score=197.32 Aligned_cols=177 Identities=14% Similarity=0.222 Sum_probs=150.5
Q ss_pred hhHhhHhHHHHHhhhheeeEEecccCCccccccCccccccCCCCcccccccccCCCCchhhhhhhHHHHHHHHHHHHhhh
Q psy15554 32 MVILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSSFFISLDNSTAWVLHKEKTDPHAAFFYVELACNAWFTFELLVRAV 111 (339)
Q Consensus 32 ~~~~~~~i~~~I~ls~i~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~~~~iF~~E~~lrl~ 111 (339)
++.|+.++.++|++|++.+++++.|+. +.+....+..+|.+++++|++|+++|++
T Consensus 29 ~~~f~~~i~~li~l~~i~~~~~~~~~~-------------------------~~~~~~~l~~~e~~~~~iF~~E~~lrl~ 83 (285)
T 3rvy_A 29 SSFFTKFIIYLIVLNGITMGLETSKTF-------------------------MQSFGVYTTLFNQIVITIFTIEIILRIY 83 (285)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCTTH-------------------------HHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCccc-------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367999999999999999999995532 1224457899999999999999999999
Q ss_pred ccCcchhhccccccchhhhhhhHHHHHHHHccccccchhHHHHHhhhhhhcccccccCcchhHHHHHHHHHHHHHHHHHH
Q psy15554 112 VSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVF 191 (339)
Q Consensus 112 ~a~~~~~y~~~~~niiDl~~ilp~~v~~~~~~~~~~~~~lr~lRllRllRilrl~r~~~~l~~l~~tl~~s~~~l~~l~~ 191 (339)
+++ .+|++++||++|+++++|+++... ..++.+|++|++|++|+.|+.++++.+..++.++.+++.....
T Consensus 84 ~~~--~~y~~~~wn~~Dl~~v~~~~i~~~--------~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~l~~~~~ 153 (285)
T 3rvy_A 84 VHR--ISFFKDPWSLFDFFVVAISLVPTS--------SGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIA 153 (285)
T ss_dssp TTG--GGGGGCHHHHHHHHHHHHHHSCSS--------SSCTHHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGGGHHHHH
T ss_pred HHh--HHHHcCChHHhHHHHHHHHHHccc--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987 789999999999999999875431 3477899999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEeccc--ch-hhh-hccccc
Q psy15554 192 FLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSF--YT-DIL-LQDKVQ 246 (339)
Q Consensus 192 ~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tltt--Yg-di~-p~t~~g 246 (339)
+..+.+++||...+..++ +.. +.+|.+.++++||+++++|| || |+. |.+..|
T Consensus 154 ~~~~~~~~fa~~g~~~f~--~~~-~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~ 209 (285)
T 3rvy_A 154 LMTLFFYIFAIMATQLFG--ERF-PEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVY 209 (285)
T ss_dssp HHHHHHHHHHHHHHHHHT--TTC-HHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhC--ccc-ccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcC
Confidence 888999999988777765 222 22599999999999999999 99 986 877655
No 5
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=99.86 E-value=2.8e-23 Score=186.06 Aligned_cols=179 Identities=17% Similarity=0.261 Sum_probs=139.3
Q ss_pred hhhhHhhHhHHHHHhhhheeeEEecccCCccccccCccccccCCCCcccccccccCCCCchhhhhhhHHHHHHHHHHHHh
Q psy15554 30 AYMVILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSSFFISLDNSTAWVLHKEKTDPHAAFFYVELACNAWFTFELLVR 109 (339)
Q Consensus 30 ~~~~~~~~~i~~~I~ls~i~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~~~~iF~~E~~lr 109 (339)
..++.++..+.++|++|++..++|+.|. +++.++.+..+|.+++.+|++|+++|
T Consensus 9 v~~~~f~~~i~~~I~ln~i~l~~~~~~~--------------------------~~~~~~~l~~~e~~~~~iF~~E~~lr 62 (229)
T 4dxw_A 9 KDNRIFQFTVVSIIILNAVLIGATTYEL--------------------------DPLFLETIHLLDYGITIFFVIEILIR 62 (229)
T ss_dssp TTCHHHHHHHHHHHHHHHHSTTTCCSSS--------------------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCchHHHHHHHHHHHHHHHHHHccCCC--------------------------ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456799999999999999999999431 22234578999999999999999999
Q ss_pred hhccCcchhhccccccchhhhhhhHHHHHHHHccccccchhHHHHHhhhhhhcccccccCcchhHHHHHHHHHHHHHHHH
Q psy15554 110 AVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLL 189 (339)
Q Consensus 110 l~~a~~~~~y~~~~~niiDl~~ilp~~v~~~~~~~~~~~~~lr~lRllRllRilrl~r~~~~l~~l~~tl~~s~~~l~~l 189 (339)
++++++|.+|++++||++|+++++|++++... ...++.+|.+|++|++|+.|+.+++|.+..++.++.+++...
T Consensus 63 i~~~~~~~~y~~~~wni~D~~~v~~~~i~~~~------~~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~ 136 (229)
T 4dxw_A 63 FIGEKQKADFFKSGWNIFDTVIVAISLIPIPN------NSSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFV 136 (229)
T ss_dssp HHC---------CHHHHHHHHHHHHTTCC--------------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCchhHHhcCCcHHHHHHHHHHHHhhcCc------cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99998899999999999999999987765432 135677899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEeccc--chhhhhcc
Q psy15554 190 VFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSF--YTDILLQD 243 (339)
Q Consensus 190 ~~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tltt--Ygdi~p~t 243 (339)
..++.+.+.+||...++.++ ...|+ +|.+.+.+++++..++|+ |+|+...+
T Consensus 137 ~~~l~~~~~ifa~~g~~lf~-~~~~~--~F~~~~~a~~~lf~~~t~~~w~~i~~~~ 189 (229)
T 4dxw_A 137 SLLLFIILYIYATMGAILFG-NDDPS--RWGDLGISLITLFQVLTLSSWETVMLPM 189 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TTSCT--TTSSHHHHHHHHHHHHTTSSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc-cCCcc--cccCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 99999999999998766666 22333 699999999999999998 99886654
No 6
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=99.82 E-value=1.5e-21 Score=160.16 Aligned_cols=125 Identities=14% Similarity=0.177 Sum_probs=110.1
Q ss_pred hhHhhHhHHHHHhhhheeeEEecccCCccccccCccccccCCCCcccccccccCCCCchhhhhhhHHHHHHHHHHHHhhh
Q psy15554 32 MVILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSSFFISLDNSTAWVLHKEKTDPHAAFFYVELACNAWFTFELLVRAV 111 (339)
Q Consensus 32 ~~~~~~~i~~~I~ls~i~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~~~~iF~~E~~lrl~ 111 (339)
++.|+..+..+|++|++.+++||.|+.+. +.++.+..+|.+|+++|++||++|++
T Consensus 5 ~~~f~~~i~~lIlls~~~~~~et~~~~~~-------------------------~~~~~l~~~d~~~~~iFt~E~~lRl~ 59 (132)
T 1ors_C 5 HPLVELGVSYAALLSVIVVVVEYTMQLSG-------------------------EYLVRLYLVDLILVIILWADYAYRAY 59 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSCCCS-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhchhhhH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999765432 23456889999999999999999999
Q ss_pred ccCcchhhccccccchhhhhhhHHHHHHHHccccccchhHHHHHhhhhhhcccccccCcchhHHHHHHHHHHHHH
Q psy15554 112 VSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKEL 186 (339)
Q Consensus 112 ~a~~~~~y~~~~~niiDl~~ilp~~v~~~~~~~~~~~~~lr~lRllRllRilrl~r~~~~l~~l~~tl~~s~~~l 186 (339)
++++|++|++ ||++|+++++|++++...+ +....+|.+|++|++|++|+.|+.++++.+..++.++.+++
T Consensus 60 ~~~~~~~y~~--~niiDllailp~~~~~~~~---~~l~~lr~lRllRv~Rvlkl~r~~~~l~~l~~~l~~s~~~l 129 (132)
T 1ors_C 60 KSGDPAGYVK--KTLYEIPALVPAGLLALIE---GHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKL 129 (132)
T ss_dssp HTTSTTTTTT--TCGGGTGGGSCHHHHHHHH---HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHH--HHHHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999999887652 33567888999999999999999999999999999998876
No 7
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.66 E-value=4.1e-17 Score=162.22 Aligned_cols=141 Identities=35% Similarity=0.628 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEecccchhhhhcccc--cc-----hhhhhHHHHHHHhhhc
Q psy15554 191 FFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKV--QQ-----SDILEFFSIIRILRLF 263 (339)
Q Consensus 191 ~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tlttYgdi~p~t~~--g~-----~~~l~~lrilri~ri~ 263 (339)
.+..++..+|+.+ ++.|++.++++.+|.+.+++++|+++++|.|.++...... |. ...+|++|++|++|++
T Consensus 243 ~ie~i~~~iFtiE--~ilR~~~~~~k~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~lrvlRllRvlRil 320 (514)
T 2r9r_B 243 IVETLCIIWFSFE--FLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIF 320 (514)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHSSCSSSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHH--HHHHHHhCCcHHHHHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 4556778889999 8999999998889999999999999999997666543111 11 3478999999999999
Q ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeccCCCCccCCCCCCcccchheeeeeeecc
Q psy15554 264 KLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSF 336 (339)
Q Consensus 264 kL~r~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~~~s~~~y~~E~~~~~~~~~~f~s~~~~~ww~~~t~~~~ 336 (339)
|+.|++++++.+..+++++.++++.+++++++++.++|+++|++|++.++. +|+|+++|+||+++|+|+.
T Consensus 321 kL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~~~~~~---~F~s~~~a~y~~~vT~TTv 390 (514)
T 2r9r_B 321 KLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDS---QFPSIPDAFWWAVVSMTTV 390 (514)
T ss_dssp GGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTC---SCSSHHHHHHHHHHHHTTC
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeccCCCc---cccchhhhhheeeeEEEec
Confidence 999999999999999999999999999999999999999999999876554 5999999999999999964
No 8
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=99.59 E-value=9.7e-17 Score=133.48 Aligned_cols=119 Identities=13% Similarity=0.168 Sum_probs=89.7
Q ss_pred hHhhHhHHHHHhhhheeeEEecccCCccccccCccccccCCCCcccccccccCCCCchhhhhhhHHHHHHHHHHHHhhhc
Q psy15554 33 VILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSSFFISLDNSTAWVLHKEKTDPHAAFFYVELACNAWFTFELLVRAVV 112 (339)
Q Consensus 33 ~~~~~~i~~~I~ls~i~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~~~~iF~~E~~lrl~~ 112 (339)
+.++..+.+++++|++..++|+.++.+. +..+.+..+|.+|+++|++||++|+++
T Consensus 21 ~~f~~~i~~lil~sv~~v~~et~~~i~~-------------------------~~~~~~~~id~~~~~iF~~Ey~lRl~~ 75 (147)
T 2kyh_A 21 PLVELGVSYAALLSVIVVVVEYTMQLSG-------------------------EYLVRLYLVDLILVIILWADYAYRAYK 75 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHhhch-------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999999665421 123468899999999999999999999
Q ss_pred cCcchhhccccccchhhhhhhHHHHHHHHccccccchhHHHHHhhhhhhcccccccCcchhHHHHHHHH
Q psy15554 113 SPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKA 181 (339)
Q Consensus 113 a~~~~~y~~~~~niiDl~~ilp~~v~~~~~~~~~~~~~lr~lRllRllRilrl~r~~~~l~~l~~tl~~ 181 (339)
+++|++|+++ |++|+++++|.+..+..+ +..+.+|++|++|++|++|+.|..+..+.+.+++++
T Consensus 76 a~~k~~f~~~--~iiDllailP~~~~~~~~---~~lr~lRvlRllRv~Rllrl~r~~~~~~~l~~al~~ 139 (147)
T 2kyh_A 76 SGDPAGYVKK--TLYEIPALVPAGLLALIE---GHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIAD 139 (147)
T ss_dssp HTCHHHHHHH--STTTHHHHCCHHHHHHHH---HHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHH--HHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 999999999999777542 123445555555566666666655544455444443
No 9
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=99.50 E-value=3.4e-15 Score=133.33 Aligned_cols=135 Identities=16% Similarity=0.178 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEecccchhhhhcccccchhhhhHHHHHHHhhhcccccCch
Q psy15554 191 FFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSP 270 (339)
Q Consensus 191 ~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tlttYgdi~p~t~~g~~~~l~~lrilri~ri~kL~r~~~ 270 (339)
.....+..+|+.| +..|.+.+|++.+|.+.++++.|.+++++.+.+... ...++++|.+|++|++|+.|+++
T Consensus 46 ~~e~~~~~iF~~E--~~lri~~~~~~~~y~~~~wni~D~~~v~~~~i~~~~------~~~~~~lr~~RilR~lrl~~~~~ 117 (229)
T 4dxw_A 46 LLDYGITIFFVIE--ILIRFIGEKQKADFFKSGWNIFDTVIVAISLIPIPN------NSSFLVLRLLRIFRVLRLISVIP 117 (229)
T ss_dssp HHHHHHHHHHHHH--HHHHHHC---------CHHHHHHHHHHHHTTCC--------------CCTTHHHHHHTTHHHHCH
T ss_pred HHHHHHHHHHHHH--HHHHHHHcCchhHHhcCCcHHHHHHHHHHHHhhcCc------cHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445677889999 889999988766899999999999988887655432 12456778888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeccCCCCccCCCCCCcccchheeeeeeecc
Q psy15554 271 GLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSF 336 (339)
Q Consensus 271 ~l~~L~~~~~~~~~~l~~~~~~~~~~~~~~s~~~y~~E~~~~~~~~~~f~s~~~~~ww~~~t~~~~ 336 (339)
+++.+.+++.++.+++..+..++++.++++|.+.+.++++.+|+. |+|+|+|+||.+.++|.-
T Consensus 118 ~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~lf~~~~~~~---F~~~~~a~~~lf~~~t~~ 180 (229)
T 4dxw_A 118 ELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAILFGNDDPSR---WGDLGISLITLFQVLTLS 180 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCTT---TSSHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc---ccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999988865 999999999999988863
No 10
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.49 E-value=2.1e-15 Score=139.06 Aligned_cols=131 Identities=15% Similarity=0.229 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEecccchhhhhcccccchhhhhHHHHHHHhhhcccccCch
Q psy15554 191 FFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSP 270 (339)
Q Consensus 191 ~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tlttYgdi~p~t~~g~~~~l~~lrilri~ri~kL~r~~~ 270 (339)
....++..+|..+ +..|++.++ .+|.+.++++.|.+++++.+.+..+ .++++|++|++|++|+.|+++
T Consensus 65 ~~e~~~~~iF~~E--~~lrl~~~~--~~y~~~~wn~~Dl~~v~~~~i~~~~--------~~~~lr~~RilR~lrl~~~~~ 132 (285)
T 3rvy_A 65 LFNQIVITIFTIE--IILRIYVHR--ISFFKDPWSLFDFFVVAISLVPTSS--------GFEILRVLRVLRLFRLVTAVP 132 (285)
T ss_dssp HHHHHHHHHHHHH--HHHHHHTTG--GGGGGCHHHHHHHHHHHHHHSCSSS--------SCTHHHHHGGGGGGHHHHSST
T ss_pred HHHHHHHHHHHHH--HHHHHHHHh--HHHHcCChHHhHHHHHHHHHHcccc--------hHHHHHHHHHHHHHHHHHHHH
Confidence 4455677889999 889988888 3799999999999999887654321 367899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeccCCCCccCCCCCCcccchheeeeeeecc
Q psy15554 271 GLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSF 336 (339)
Q Consensus 271 ~l~~L~~~~~~~~~~l~~~~~~~~~~~~~~s~~~y~~E~~~~~~~~~~f~s~~~~~ww~~~t~~~~ 336 (339)
+++.+.+++.++.+++..+++++++.++++|.+.+.+|++.+|+. |+|+|+|+||+++|+|.-
T Consensus 133 ~l~~l~~~l~~~~~~l~~~~~~~~~~~~~fa~~g~~~f~~~~~~~---F~s~~~a~~~~~~~~T~~ 195 (285)
T 3rvy_A 133 QMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEW---FGTLGESFYTLFQVMTLE 195 (285)
T ss_dssp THHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHTTTCHHH---HSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc---cCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999988875 999999999999999864
No 11
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.46 E-value=1.9e-14 Score=127.93 Aligned_cols=137 Identities=13% Similarity=0.149 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEecccchhhhhcccccchhhhhHHHHHHHhhhccccc-Cc
Q psy15554 191 FFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTR-HS 269 (339)
Q Consensus 191 ~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tlttYgdi~p~t~~g~~~~l~~lrilri~ri~kL~r-~~ 269 (339)
.....+..+|..+ +..|++.+|++.+|.+. ++.|.++++|.|....+....+....+|.+|++|++|++|+.+ +.
T Consensus 43 ~~d~~~~~iF~~e--~~lr~~~~~~~~~y~~~--~iiDllailP~~~~~~~~~~~~~~~~lr~lRllRllR~~r~~~~~~ 118 (223)
T 1orq_C 43 LVDLILVIILWAD--YAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGS 118 (223)
T ss_dssp HHHHHHHHHHHHH--HHHHHHTTSCHHHHHHH--HHHHCTTHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHH--HHHHHcccccHHHHHHH--hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677889999 88899999988888875 8999999999865443222111123566777777777777655 55
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeccCCCCccCCCCCCcccchheeeeeeecc
Q psy15554 270 PGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSF 336 (339)
Q Consensus 270 ~~l~~L~~~~~~~~~~l~~~~~~~~~~~~~~s~~~y~~E~~~~~~~~~~f~s~~~~~ww~~~t~~~~ 336 (339)
+..+.+.++++++ ++..++..+++.+.++|+++|++|++++++ +|.|+++|+||+++|+|+.
T Consensus 119 ~~~~~l~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~---~~~~~~~s~y~~~~t~tTv 180 (223)
T 1orq_C 119 KFLSAIADAADKI--RFYHLFGAVMLTVLYGAFAIYIVEYPDPNS---SIKSVFDALWWAVVTATTV 180 (223)
T ss_dssp SHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSSSTTC---SCCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCcCC---CcCcchhHHHhHHhHHhcc
Confidence 5677788877663 577777778888899999999999875554 4899999999999999974
No 12
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.46 E-value=6.3e-15 Score=139.94 Aligned_cols=128 Identities=17% Similarity=0.125 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEe-cccchhhhhcccccchhhhhHHHHHHHhhhcccccCchHHHH
Q psy15554 196 GIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIAT-LSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKI 274 (339)
Q Consensus 196 ~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~t-lttYgdi~p~t~~g~~~~l~~lrilri~ri~kL~r~~~~l~~ 274 (339)
++.+|..+ +..|+..++++..|...+.++.|++++ +|.+....+ -.+.+|++|++|++|+.|++++++.
T Consensus 48 ~~~~f~~e--~~~r~~~~~~~~~~~~~~~~i~Dl~~i~~p~~~~~~~--------~~~~~r~lr~~R~lrl~r~~~~~~~ 117 (355)
T 3beh_A 48 IWGAYLLQ--LAATLLKRRAGVVRDRTPKIAIDVLAVLVPLAAFLLD--------GSPDWSLYCAVWLLKPLRDSTFFPV 117 (355)
T ss_dssp HHHHHHHH--HHHHHHCCCSCSSCCCHHHHHHHHHHHHHHHHHHHSC--------CSGGGGGGGGGGGSHHHHTCSSHHH
T ss_pred HHHHHHHH--HHHhcccccccceeccCcchHHHHHHHHHHHHHHHhc--------cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 33457777 667877777776678889999999998 576543322 1355688888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeccCCCCccCCCCCCcccchheeeeeeecc
Q psy15554 275 LIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSF 336 (339)
Q Consensus 275 L~~~~~~~~~~l~~~~~~~~~~~~~~s~~~y~~E~~~~~~~~~~f~s~~~~~ww~~~t~~~~ 336 (339)
+..+++++.+++..++.++++.++++|+++|++|++.+|+. |+|+++|+||+++|+|+.
T Consensus 118 l~~~l~~~~~~l~~~~~~~~~~~~~~a~~~~~~e~~~~~~~---f~~~~~s~y~~~~t~ttv 176 (355)
T 3beh_A 118 LGRVLANEARNLIGVTTLFGVVLFAVALAAYVIERDIQPEK---FGSIPQAMWWAVVTLSTT 176 (355)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHH---HSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc---cccHHHHHHHHHhheeec
Confidence 99999999999999999999999999999999999988876 999999999999999975
No 13
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.35 E-value=1.2e-13 Score=115.84 Aligned_cols=106 Identities=18% Similarity=0.191 Sum_probs=49.9
Q ss_pred ccchhhhhhhHHHHHHHHccccccchhHHHHHhhhhhhcccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15554 124 VNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASL 203 (339)
Q Consensus 124 ~niiDl~~ilp~~v~~~~~~~~~~~~~lr~lRllRllRilrl~r~~~~l~~l~~tl~~s~~~l~~l~~~~~i~v~iFa~~ 203 (339)
.+++|+++++| .+|.+|++|++|++ +.|+...++ . +.....++.+...+++++..
T Consensus 15 ~~~~dli~~lp---------------~lr~lRllRi~ril-l~r~~~~l~-------~--~~~~~~~~~~~~~i~~~a~~ 69 (155)
T 2a9h_A 15 EGRGRLIKHMP---------------PMLSGLLARLVKLL-LGRHGSALH-------W--RAAGAATVLLVIVLLAGSYL 69 (155)
T ss_dssp -----------------------------------------------CCH-------H--HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHH---------------HHHHHHHHHHHHHH-HHHHHHHHH-------H--HHHHHHHHHHHHHHHHHHHH
Confidence 37899999988 35777777777777 666532222 1 12223333444556778888
Q ss_pred HHHHhhhccCCCcceeecCccceeeeEEeccc--chhhhhcccccchhhhhHHHHHHH
Q psy15554 204 VYYAERLQVSPNIFQFIRSPVNVIDIIATLSF--YTDILLQDKVQQSDILEFFSIIRI 259 (339)
Q Consensus 204 iy~~er~~~~~~~~~f~~~~~al~~~i~tltt--Ygdi~p~t~~g~~~~l~~lrilri 259 (339)
+|+.|+ ..|++ ++.+.++++||+++|++| |||+.|.|..|| ++.++.++-+
T Consensus 70 ~~~~E~--~~~~~-~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr--~~~~~~~l~G 122 (155)
T 2a9h_A 70 AVLAER--GAPGA-ALISYPDALWWSVETATTVGYGDLYPVTLWGR--CVAVVVMVAG 122 (155)
T ss_dssp HHHHHT--TSSCS-STTSHHHHHHHHHHHHTTCCCSSSCCCSHHHH--HHHHHHHHHH
T ss_pred HHHHhc--cCCCC-ccCcccceeheeeeeeecccCCCCCCCChhHH--HHHHHHHHHH
Confidence 888888 33444 677889999999999999 999999998876 4444444333
No 14
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.20 E-value=9e-12 Score=100.30 Aligned_cols=116 Identities=19% Similarity=0.202 Sum_probs=61.3
Q ss_pred hhHHHHHhhhhhhcccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceeecCccceee
Q psy15554 149 DILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVID 228 (339)
Q Consensus 149 ~~lr~lRllRllRilrl~r~~~~l~~l~~tl~~s~~~l~~l~~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~ 228 (339)
+.+|.+|++|++|++ +.|+.. +++.. .+..........+.+++..+|+.|+ ..+++ .+.+.++++||
T Consensus 2 ~~lr~lRl~Ri~ri~-L~R~~~-------~l~~~--~~~~~~~~~~~~~~~~a~~~~~~E~--~~~~~-~~~~~~~a~y~ 68 (122)
T 2ih3_C 2 APMLSGLLARLVKLL-LGRHGS-------ALHWR--AAGAATVLLVIVLLAGSYLAVLAER--GAPGA-QLITYPRALWW 68 (122)
T ss_dssp ------------------------------CHHH--HHHHHHHHHHHHHHHHHHHHHHHHT--TSTTC-CCCSHHHHHHH
T ss_pred cHHHHHHHHHHHHHH-HHHhHH-------HHHHH--HHHHHHHHHHHHHHHHHHhhheeee--cCCCC-ccCccccchhh
Confidence 356778888888888 666621 12111 1222223334455667778888887 44444 57788899999
Q ss_pred eEEeccc--chhhhhcccccchhhhhHHHHHHHhhhcccccCchHHHHHHHHHHHHHH
Q psy15554 229 IIATLSF--YTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAK 284 (339)
Q Consensus 229 ~i~tltt--Ygdi~p~t~~g~~~~l~~lrilri~ri~kL~r~~~~l~~L~~~~~~~~~ 284 (339)
.++|++| |||+.|.|..|| ++.++.++-+.-++.+ ....++..+.+..+
T Consensus 69 ~~~T~tTvGyGDi~P~t~~gr--~~~~~~~~~Gi~~~~~-----~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 69 ACETATTVAYGDLYPVTLWGR--LVAVVVMVAGITSFGL-----VTAALATWFVGREQ 119 (122)
T ss_dssp HHHHHTTCCCSSSCCCSHHHH--HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred eeeeeeeeecCCCCCCCccHH--HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 9999999 999999999887 6666666666555544 45555555554443
No 15
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.07 E-value=2.2e-11 Score=102.01 Aligned_cols=85 Identities=15% Similarity=0.122 Sum_probs=40.4
Q ss_pred cceeeeEEecccchhhhhcccccchhhhhHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15554 224 VNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASL 303 (339)
Q Consensus 224 ~al~~~i~tlttYgdi~p~t~~g~~~~l~~lrilri~ri~kL~r~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~~~s~~ 303 (339)
.++.|+++.+| .+|++|++|++|++ +.|+.. ++++ +.+...++.+++.++++|.+
T Consensus 15 ~~~~dli~~lp---------------~lr~lRllRi~ril-l~r~~~-------~l~~--~~~~~~~~~~~~~i~~~a~~ 69 (155)
T 2a9h_A 15 EGRGRLIKHMP---------------PMLSGLLARLVKLL-LGRHGS-------ALHW--RAAGAATVLLVIVLLAGSYL 69 (155)
T ss_dssp ------------------------------------------------------CCHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHH---------------HHHHHHHHHHHHHH-HHHHHH-------HHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 57888898888 57888888888888 888732 2332 23444455566677889999
Q ss_pred hheeccCCCCccCCCCCCcccchheeeeeeecc
Q psy15554 304 VYYAERLQTLDRLYEYSKLEIAIDYTSLKISSF 336 (339)
Q Consensus 304 ~y~~E~~~~~~~~~~f~s~~~~~ww~~~t~~~~ 336 (339)
+|++|++.+++ +|.|+++|+|||++|+|+.
T Consensus 70 ~~~~E~~~~~~---~~~s~~~a~y~s~vTltTV 99 (155)
T 2a9h_A 70 AVLAERGAPGA---ALISYPDALWWSVETATTV 99 (155)
T ss_dssp HHHHHTTSSCS---STTSHHHHHHHHHHHHTTC
T ss_pred HHHHhccCCCC---ccCcccceeheeeeeeecc
Confidence 99999886554 4999999999999999975
No 16
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=99.06 E-value=6.1e-11 Score=96.74 Aligned_cols=90 Identities=16% Similarity=0.224 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEecccchhhhhcccccchhhhhHHHHHHHhhhcccccCch
Q psy15554 191 FFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSP 270 (339)
Q Consensus 191 ~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tlttYgdi~p~t~~g~~~~l~~lrilri~ri~kL~r~~~ 270 (339)
.....+..+|+.| |..|++.+|++.+|.+ .|++|.++++|.|.+... + +....+|++|++|++|++|+.||++
T Consensus 41 ~~d~~~~~iFt~E--~~lRl~~~~~~~~y~~--~niiDllailp~~~~~~~-~--~~l~~lr~lRllRv~Rvlkl~r~~~ 113 (132)
T 1ors_C 41 LVDLILVIILWAD--YAYRAYKSGDPAGYVK--KTLYEIPALVPAGLLALI-E--GHLAGLGLFRLVRLLRFLRILLIIS 113 (132)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHTTSTTTTTT--TCGGGTGGGSCHHHHHHH-H--HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHHHHh-c--chHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456788899999 9999999999888988 999999999999877654 2 2345789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15554 271 GLKILIHTFKASAKELT 287 (339)
Q Consensus 271 ~l~~L~~~~~~~~~~l~ 287 (339)
+++.++++++++.+|+.
T Consensus 114 ~l~~l~~~l~~s~~~l~ 130 (132)
T 1ors_C 114 RGSKFLSAIADAADKLV 130 (132)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999974
No 17
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=98.87 E-value=4e-10 Score=90.55 Aligned_cols=74 Identities=16% Similarity=0.113 Sum_probs=39.5
Q ss_pred hhhHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeccCCCCccCCCCCCcccchhee
Q psy15554 250 ILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYT 329 (339)
Q Consensus 250 ~l~~lrilri~ri~kL~r~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~~~s~~~y~~E~~~~~~~~~~f~s~~~~~ww~ 329 (339)
.+|++|++|++|++ +.|| +.+++.+ .+...+..+++.++++|.++|++|++++++ ++.|+++|+||+
T Consensus 3 ~lr~lRl~Ri~ri~-L~R~-------~~~l~~~--~~~~~~~~~~~~~~~~a~~~~~~E~~~~~~---~~~~~~~a~y~~ 69 (122)
T 2ih3_C 3 PMLSGLLARLVKLL-LGRH-------GSALHWR--AAGAATVLLVIVLLAGSYLAVLAERGAPGA---QLITYPRALWWA 69 (122)
T ss_dssp -----------------------------CHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTSTTC---CCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHh-------HHHHHHH--HHHHHHHHHHHHHHHHHHhhheeeecCCCC---ccCccccchhhe
Confidence 57888888888888 8887 2233322 234444555666788999999999876554 499999999999
Q ss_pred eeeeecc
Q psy15554 330 SLKISSF 336 (339)
Q Consensus 330 ~~t~~~~ 336 (339)
.+|+|+.
T Consensus 70 ~~T~tTv 76 (122)
T 2ih3_C 70 CETATTV 76 (122)
T ss_dssp HHHHTTC
T ss_pred eeeeeee
Confidence 9999975
No 18
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=98.45 E-value=1.8e-07 Score=72.68 Aligned_cols=74 Identities=16% Similarity=0.025 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEeccc--chhhhhcccccchhhhhHHHHHHHhhh
Q psy15554 185 ELTLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSF--YTDILLQDKVQQSDILEFFSIIRILRL 262 (339)
Q Consensus 185 ~l~~l~~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tltt--Ygdi~p~t~~g~~~~l~~lrilri~ri 262 (339)
++...+..+...+++++..+|+.|+ ..|++ .+.+..+++||.++|++| |||+.|.+..|| ++.++.++-++-+
T Consensus 7 ~~l~~~~~~~~~~~~~a~~~~~~E~--~~~~~-~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr--~~~~~~~l~G~~~ 81 (103)
T 2k1e_A 7 EAQKAEEELQKVLEEASKKAVEAER--GAPGA-ALISYPDAIWWSVETATTVGYGDRYPVTEEGR--KVAEQVMKAGIEV 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--TSTTC-CCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcc--CCCCc-ccccHHHHHHHHHHHHhcccCCCCCCCChhHH--HHHHHHHHHHHHH
Confidence 3344445555666778888888888 33443 577888999999999999 999999999887 5555544444433
Q ss_pred c
Q psy15554 263 F 263 (339)
Q Consensus 263 ~ 263 (339)
+
T Consensus 82 ~ 82 (103)
T 2k1e_A 82 F 82 (103)
T ss_dssp H
T ss_pred H
Confidence 3
No 19
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=98.20 E-value=2.9e-07 Score=76.13 Aligned_cols=87 Identities=15% Similarity=0.215 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEecccchhhhhcccccchhhhhHHHHHHHhhhcccccCch
Q psy15554 191 FFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSP 270 (339)
Q Consensus 191 ~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tlttYgdi~p~t~~g~~~~l~~lrilri~ri~kL~r~~~ 270 (339)
.....++.+|+.+ |..|++.+|++.+|.+. +++|.++++|.|+....+ +..+.+|++|++|++|++|+.|+.+
T Consensus 56 ~id~~~~~iF~~E--y~lRl~~a~~k~~f~~~--~iiDllailP~~~~~~~~---~~lr~lRvlRllRv~Rllrl~r~~~ 128 (147)
T 2kyh_A 56 LVDLILVIILWAD--YAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIE---GHLAGLGLFRLVRLLRFLRILLIIS 128 (147)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHTCHHHHHHH--STTTHHHHCCHHHHHHHH---HHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHCCcHHHHHHH--HHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455778889999 99999999999899885 999999999998665432 1245788888888999999999888
Q ss_pred HHHHHHHHHHHHHH
Q psy15554 271 GLKILIHTFKASAK 284 (339)
Q Consensus 271 ~l~~L~~~~~~~~~ 284 (339)
..+.+.+++++-.+
T Consensus 129 ~~~~l~~al~~f~~ 142 (147)
T 2kyh_A 129 RGSKFLSAIADAAD 142 (147)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888876544
No 20
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.11 E-value=3.6e-07 Score=83.16 Aligned_cols=27 Identities=11% Similarity=-0.015 Sum_probs=25.2
Q ss_pred cCccceeeeEEeccc--chhhhhcccccc
Q psy15554 221 RSPVNVIDIIATLSF--YTDILLQDKVQQ 247 (339)
Q Consensus 221 ~~~~al~~~i~tltt--Ygdi~p~t~~g~ 247 (339)
+.++++||+++|++| |||+.|.|..||
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk 121 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGK 121 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhH
Confidence 567999999999999 999999999998
No 21
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.10 E-value=3.6e-07 Score=84.41 Aligned_cols=38 Identities=8% Similarity=0.096 Sum_probs=30.6
Q ss_pred cCccceeeeEEeccc--chhhhhcccccchhhhhHHHHHHHh
Q psy15554 221 RSPVNVIDIIATLSF--YTDILLQDKVQQSDILEFFSIIRIL 260 (339)
Q Consensus 221 ~~~~al~~~i~tltt--Ygdi~p~t~~g~~~~l~~lrilri~ 260 (339)
+.++++||+++|++| |||+.|.|..|| ++.++..+-++
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk--~~~i~~~l~Gi 154 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGR--LFCIFYALVGI 154 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHH--HHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccch--hHHHHHHHHHH
Confidence 567899999999999 999999999988 55555544433
No 22
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=98.06 E-value=8.8e-07 Score=72.45 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEeccc--chhhhhcccccchhhhhHHHHHHHh
Q psy15554 185 ELTLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSF--YTDILLQDKVQQSDILEFFSIIRIL 260 (339)
Q Consensus 185 ~l~~l~~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tltt--Ygdi~p~t~~g~~~~l~~lrilri~ 260 (339)
.+...++.+...+++++..+|+.|+ ..++. .+.+.++++||.++|++| |||+.|.|..|| ++.++.++-++
T Consensus 7 ~~~~~~~~~~~~~~~~a~~~~~~e~--~~~~~-~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r--~~~~~~~~~G~ 79 (139)
T 3eff_K 7 AAGAATVLLVIVLLAGSYLAVLAER--GAPGA-QLITYPRALWWSVETATTVGYGDLYPVTLWGR--LVAVVVMVAGI 79 (139)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTS--SCTTC-CCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCCCc-ccCCHHHHHHHHheeeecccCCCCcCCCcCHH--HHHHHHHHHHH
Confidence 3444455566677778888888887 33333 567778999999999999 999999998887 55555444433
No 23
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=97.89 E-value=7.7e-06 Score=63.29 Aligned_cols=52 Identities=13% Similarity=-0.112 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheeccCCCCccCCCCCCcccchheeeeeeecc
Q psy15554 282 SAKELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSF 336 (339)
Q Consensus 282 ~~~~l~~~~~~~~~~~~~~s~~~y~~E~~~~~~~~~~f~s~~~~~ww~~~t~~~~ 336 (339)
+.+++...++.++..++++|.++|++|+..+++ +|.+..+++||+.+|+|+.
T Consensus 4 ~~r~~l~~~~~~~~~~~~~a~~~~~~E~~~~~~---~~~~~~~a~y~~~~T~tTv 55 (103)
T 2k1e_A 4 HEREAQKAEEELQKVLEEASKKAVEAERGAPGA---ALISYPDAIWWSVETATTV 55 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTC---CCCCGGGTTTTTTGGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCc---ccccHHHHHHHHHHHHhcc
Confidence 445566666777778889999999999886554 4899999999999999975
No 24
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=97.84 E-value=2.6e-06 Score=69.48 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEeccc--chhhhhcccccchhhhhHHHHH
Q psy15554 192 FLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSF--YTDILLQDKVQQSDILEFFSII 257 (339)
Q Consensus 192 ~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tltt--Ygdi~p~t~~g~~~~l~~lril 257 (339)
.....++++++.+++.|. ++.+.++++||+++|++| |||+.|.|..|| ++.++-++
T Consensus 22 ~~~~~~~~~~~~~~~~e~--------~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr--~~~~~~~~ 79 (137)
T 4h33_A 22 IFVLLVIIIPVPMVFIEP--------EINNYPDALWWAIVTATTVGYGDIVPVTPIGR--ILASIMML 79 (137)
T ss_dssp HHHHHHHHTHHHHHHHCS--------SCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcccCCCCCCCCHhHH--HHHHHHHH
Confidence 334445556666666553 345677999999999999 999999998887 44444433
No 25
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=97.46 E-value=3e-05 Score=72.45 Aligned_cols=71 Identities=14% Similarity=-0.031 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEeccc--chhhhhcccccc
Q psy15554 175 LIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSF--YTDILLQDKVQQ 247 (339)
Q Consensus 175 l~~tl~~s~~~l~~l~~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tltt--Ygdi~p~t~~g~ 247 (339)
+...++.+.+.+...++...+++.++++.+|+.|+ .+-+...+.+..+++||+++|++| |||+.|.+..|+
T Consensus 52 ~~~~l~~~~~~ll~~~~~~~l~~~l~fally~~e~--~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr 124 (333)
T 1p7b_A 52 YYWALKVSWPVFFASLAALFVVNNTLFALLYQLGD--APIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAH 124 (333)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHTTTSSSS--SCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHH
Confidence 34445666777776666666666555566677765 221222456678999999999999 999999997766
No 26
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=97.38 E-value=5.5e-05 Score=59.58 Aligned_cols=56 Identities=14% Similarity=0.146 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEeccc--chhhhhcccccchhhhhHHHHHH
Q psy15554 192 FLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSF--YTDILLQDKVQQSDILEFFSIIR 258 (339)
Q Consensus 192 ~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tltt--Ygdi~p~t~~g~~~~l~~lrilr 258 (339)
..+....+++..+|..+. + .+..+++||.++|++| |||+.|.+..|| .+.++.++-
T Consensus 29 ~~~~~~~~~g~~~~~~~e------~---~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr--~~~~~~~~~ 86 (114)
T 2q67_A 29 VLTILTLISGTIFYSTVE------G---LRPIDALYFSVVTLTTVGAGNFSPQTDFGK--IFTILYIFI 86 (114)
T ss_dssp HHHHHHHHHHHHHHHHHS------C---CCHHHHHHHHHHHHTSCCCSSCCCCSHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc------C---CCHHHHHHHHHHHhcceeCCCCccCCHhHH--HHHHHHHHH
Confidence 333444555666554333 1 1356999999999999 999999998877 444444433
No 27
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=97.38 E-value=0.0001 Score=68.87 Aligned_cols=64 Identities=9% Similarity=-0.002 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeccCCCCccCCCCCCcccchheeeeeeecc
Q psy15554 271 GLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSF 336 (339)
Q Consensus 271 ~l~~L~~~~~~~~~~l~~~~~~~~~~~~~~s~~~y~~E~~~~~~~~~~f~s~~~~~ww~~~t~~~~ 336 (339)
-...+..+++.+.+++..+++++.+++.++++++|++|++..++. .+.|+++++|||++|+|..
T Consensus 48 ~~d~~~~~l~~~~~~ll~~~~~~~l~~~l~fally~~e~~~~~~~--~~~s~~~a~yfs~vT~tTV 111 (333)
T 1p7b_A 48 WRDLYYWALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQ--SPPGFVGAFFFSVETLATV 111 (333)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTTSSSSSCCCCS--SSSSTHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC--CCCcHHHhHhhhheeeeec
Confidence 356677778888999998888888888888888999998643332 4789999999999999975
No 28
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=97.26 E-value=0.0001 Score=56.21 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEeccc--chhhhhcccccchhhhhHHHHHHHhhhc
Q psy15554 191 FFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSF--YTDILLQDKVQQSDILEFFSIIRILRLF 263 (339)
Q Consensus 191 ~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tltt--Ygdi~p~t~~g~~~~l~~lrilri~ri~ 263 (339)
+..+....+++...|..+. + .+..+++||.++|++| |||+.|.+..|| .+.++-++-+.-++
T Consensus 11 ~~~~~~~~~~g~~~~~~~e------~---~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr--~~~~~~~~~G~~~~ 74 (97)
T 3ouf_A 11 FVLTILTLISGTIFYSTVE------G---LRPIDALYFSVVTLTTVGYGDFSPQTDFGK--IFTILYIFIGIGLV 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHS------C---CCHHHHHHHHHHHHTTCCCCSSCCCSHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc------C---CCHHHHHHHHHHHHHccCCCCCCCCCccHH--HHHHHHHHHHHHHH
Confidence 3344444555555544332 1 2356899999999999 999999998877 55555555444333
No 29
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=97.25 E-value=8e-05 Score=60.64 Aligned_cols=51 Identities=14% Similarity=0.054 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhheeccCCCCccCCCCCCcccchheeeeeeecc
Q psy15554 283 AKELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSF 336 (339)
Q Consensus 283 ~~~l~~~~~~~~~~~~~~s~~~y~~E~~~~~~~~~~f~s~~~~~ww~~~t~~~~ 336 (339)
.+.+...++++++.++++|.++|++|++.+++ .+.|+++++||+.+|+|+.
T Consensus 5 ~r~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~---~~~~~~~a~yf~~~T~tTv 55 (139)
T 3eff_K 5 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGA---QLITYPRALWWSVETATTV 55 (139)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHTTSSCTTC---CCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc---ccCCHHHHHHHHheeeecc
Confidence 45566777778888899999999999886554 4899999999999999975
No 30
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=97.20 E-value=8.2e-05 Score=68.56 Aligned_cols=79 Identities=15% Similarity=0.050 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEeccc--chhhhhcccccchhhhh
Q psy15554 176 IHTFKASAKELTLLVFFLV-LGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSF--YTDILLQDKVQQSDILE 252 (339)
Q Consensus 176 ~~tl~~s~~~l~~l~~~~~-i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tltt--Ygdi~p~t~~g~~~~l~ 252 (339)
...++.+.+.+...++... ..+++||.+ |+.+. ...++. .+.+.++++||+++|++| |||+.|.+..|+ ++.
T Consensus 39 ~~~l~~~~~~ll~~~~~~~~~~~l~fa~l-y~~~~-~~~~~~-~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr--~~~ 113 (301)
T 1xl4_A 39 HDLLTVSWPVFITLITGLYLVTNALFALA-YLACG-DVIENA-RPGSFTDAFFFSVQTMATIGYGKLIPIGPLAN--TLV 113 (301)
T ss_dssp THHHHSCHHHHHHHHHHHHHHHHHHHHHH-HHHTC-SCSTTS-CTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHH--HHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHhhc-cccCCC-CcCCHHHHHHHhhhheeccCCCCCcCCCHHHH--HHH
Confidence 3445556666665555544 344677777 66664 122332 567778999999999999 999999998776 444
Q ss_pred HHHHHHH
Q psy15554 253 FFSIIRI 259 (339)
Q Consensus 253 ~lrilri 259 (339)
++.++-+
T Consensus 114 ~~~~l~G 120 (301)
T 1xl4_A 114 TLEALCG 120 (301)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
No 31
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=97.08 E-value=0.00018 Score=53.02 Aligned_cols=38 Identities=13% Similarity=0.068 Sum_probs=29.2
Q ss_pred cCccceeeeEEeccc--chhhhhcccccchhhhhHHHHHHHh
Q psy15554 221 RSPVNVIDIIATLSF--YTDILLQDKVQQSDILEFFSIIRIL 260 (339)
Q Consensus 221 ~~~~al~~~i~tltt--Ygdi~p~t~~g~~~~l~~lrilri~ 260 (339)
+..+++||.++|++| |||+.|.+..|| .+.++-++-+.
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r--~~~~~~~~~G~ 67 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGM--YFTCTLIVLGI 67 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHH--HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHH--HHHHHHHHHHH
Confidence 456899999999999 999999998877 44444444333
No 32
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=97.06 E-value=0.00022 Score=58.71 Aligned_cols=59 Identities=14% Similarity=0.140 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEeccc--chhhhhcccccchhhhhHHHHHHHh
Q psy15554 191 FFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSF--YTDILLQDKVQQSDILEFFSIIRIL 260 (339)
Q Consensus 191 ~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tltt--Ygdi~p~t~~g~~~~l~~lrilri~ 260 (339)
...+.++++++..+|..+. . .+..+++||.++|++| |||+.|.|..|+ .+.++-++-+.
T Consensus 31 ~~~~~~~~~~g~~~~~~~e------~---~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r--~~~~~~~~~g~ 91 (148)
T 3vou_A 31 FVLTFLTLTSGTIFYSTVE------G---LRPLDALYFSVVTLTTVGDGNFSPQTDFGK--VFTILYIFIGI 91 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTS------C---CCHHHHHHHHHHHHTTCCCSSCCCCSHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc------C---CCHHHHHHHHHHHHHccCCCCCCCCCccHH--HHHHHHHHHHH
Confidence 3344445555555544322 1 2456899999999999 999999998887 55555444433
No 33
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=97.04 E-value=0.00027 Score=65.67 Aligned_cols=81 Identities=16% Similarity=0.068 Sum_probs=46.7
Q ss_pred chhHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHhhhccCCCcceee--cCccceeeeEEeccc--chhhhhccc
Q psy15554 171 GLKILIHTFKAS-AKELTLLVFF-LVLGIVVFASLVYYAERLQVSPNIFQFI--RSPVNVIDIIATLSF--YTDILLQDK 244 (339)
Q Consensus 171 ~l~~l~~tl~~s-~~~l~~l~~~-~~i~v~iFa~~iy~~er~~~~~~~~~f~--~~~~al~~~i~tltt--Ygdi~p~t~ 244 (339)
.++.+..++.+. .+.....++. .++.+++||. ++.|. ..|.+ .+. +.++++||+++|++| |||++|.+.
T Consensus 29 ~l~dl~~tl~~~~~~~~ll~f~~~~~~~~~~fa~--~~~eg-~~~~~--~~~~~s~~~a~y~s~vT~tTVGYGDi~P~t~ 103 (321)
T 2qks_A 29 YLSDLFTTLVDLKWRWFFVSLAVLFLLLNTAFAT--LYMLG-SAPIA--NQFPAGFGGAFFFSVETLATVGYGDMHPQTV 103 (321)
T ss_dssp CCHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--HHHTS-SSCBT--TCSSTTHHHHHHHHHHHHTTCCCCSSCBCSH
T ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH--HHHcC-Ccccc--CcCCcchhheeeeeeEEeccccCCCcCcccH
Confidence 344555565553 3333222222 2344556662 24554 11222 344 677999999999999 999999998
Q ss_pred ccchhhhhHHHHHH
Q psy15554 245 VQQSDILEFFSIIR 258 (339)
Q Consensus 245 ~g~~~~l~~lrilr 258 (339)
.|+ ++.++.++-
T Consensus 104 ~gr--~~~~~~~l~ 115 (321)
T 2qks_A 104 YAH--WIATLEIFV 115 (321)
T ss_dssp HHH--HHHHHHHHH
T ss_pred HHH--HHHHHHHHH
Confidence 776 444444333
No 34
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=96.91 E-value=0.00021 Score=65.88 Aligned_cols=59 Identities=15% Similarity=0.049 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhheeccCCCCccCCCCCCcccchheeeeeeecc
Q psy15554 275 LIHTFKASAKELTLLVFFLVLGI-VVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSF 336 (339)
Q Consensus 275 L~~~~~~~~~~l~~~~~~~~~~~-~~~s~~~y~~E~~~~~~~~~~f~s~~~~~ww~~~t~~~~ 336 (339)
+..+++.+.+++..++++..+++ +++|++ |++|.+..++ +.+.|+++|+|||++|+|+.
T Consensus 38 ~~~~l~~~~~~ll~~~~~~~~~~~l~fa~l-y~~~~~~~~~--~~~~s~~~a~yfs~vT~tTv 97 (301)
T 1xl4_A 38 YHDLLTVSWPVFITLITGLYLVTNALFALA-YLACGDVIEN--ARPGSFTDAFFFSVQTMATI 97 (301)
T ss_dssp TTHHHHSCHHHHHHHHHHHHHHHHHHHHHH-HHHTCSCSTT--SCTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHhhccccCC--CCcCCHHHHHHHhhhheecc
Confidence 45566777888777666665444 777777 7777543333 25899999999999999975
No 35
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=96.83 E-value=0.00021 Score=58.01 Aligned_cols=44 Identities=11% Similarity=0.219 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhheeccCCCCccCCCCCCcccchheeeeeeecc
Q psy15554 285 ELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSF 336 (339)
Q Consensus 285 ~l~~~~~~~~~~~~~~s~~~y~~E~~~~~~~~~~f~s~~~~~ww~~~t~~~~ 336 (339)
.+..++++.++.+++++..+|+.|++ +.|+++|+||+++|+|+.
T Consensus 15 ~l~~~l~~~~~~~~~~~~~~~~~e~~--------~~~~~~a~y~~~~T~tTv 58 (137)
T 4h33_A 15 GLNRFLMIFVLLVIIIPVPMVFIEPE--------INNYPDALWWAIVTATTV 58 (137)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHCSS--------CCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcc
Confidence 34445555666777888899999843 678999999999999974
No 36
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=96.67 E-value=3.9e-05 Score=64.51 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEeccc--chhhhhcccccchhhhhHHHHHH
Q psy15554 195 LGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSF--YTDILLQDKVQQSDILEFFSIIR 258 (339)
Q Consensus 195 i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tltt--Ygdi~p~t~~g~~~~l~~lrilr 258 (339)
..+++++..+|+.|+ ..++. .+.+..+++||.++|++| |||+.|.|..|+ ++.++-++-
T Consensus 44 ~~~~~~a~~~~~~e~--~~~~~-~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r--~~~~~~~l~ 104 (166)
T 3pjs_K 44 IVLLAGSYLAVLAER--GAPGA-QLITYPRALWWSVETATTVGYGDLYPVTLWGR--LVAVVVMVA 104 (166)
T ss_dssp TTTTTTSSSSSSTTS--SSTTC-CCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTT--TTTHHHHHH
T ss_pred HHHHHHHHHHHHHhc--CCCCc-ccCCHHHHHHHHHHHhccccCCCCCCCCHhHH--HHHHHHHHH
Confidence 334445556566666 33333 567788999999999999 999999999988 444444433
No 37
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=96.41 E-value=0.00079 Score=62.48 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHhhhhheeccCCCCccCCCCC--Ccccchheeeeeeecc
Q psy15554 271 GLKILIHTFKAS-AKELTLLV-FFLVLGIVVFASLVYYAERLQTLDRLYEYS--KLEIAIDYTSLKISSF 336 (339)
Q Consensus 271 ~l~~L~~~~~~~-~~~l~~~~-~~~~~~~~~~s~~~y~~E~~~~~~~~~~f~--s~~~~~ww~~~t~~~~ 336 (339)
.++.+..++.+. .+.+..++ ...++.+++||. +++|++...+ ++. |+++|+|||++|+|+.
T Consensus 29 ~l~dl~~tl~~~~~~~~ll~f~~~~~~~~~~fa~--~~~eg~~~~~---~~~~~s~~~a~y~s~vT~tTV 93 (321)
T 2qks_A 29 YLSDLFTTLVDLKWRWFFVSLAVLFLLLNTAFAT--LYMLGSAPIA---NQFPAGFGGAFFFSVETLATV 93 (321)
T ss_dssp CCHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--HHHTSSSCBT---TCSSTTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH--HHHcCCcccc---CcCCcchhheeeeeeEEeccc
Confidence 356777888774 33333322 233455677773 3788775444 477 9999999999999975
No 38
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=95.50 E-value=0.0049 Score=48.20 Aligned_cols=40 Identities=10% Similarity=0.219 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhhhhheeccCCCCccCCCCCCcccchheeeeeeecc
Q psy15554 288 LLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSF 336 (339)
Q Consensus 288 ~~~~~~~~~~~~~s~~~y~~E~~~~~~~~~~f~s~~~~~ww~~~t~~~~ 336 (339)
...+++++..+++|+++|..+.+ -|.++|+||+.+|+|+.
T Consensus 25 ~~~~~~~~~~~~~g~~~~~~~e~---------~~~~~a~y~~~~T~tTv 64 (114)
T 2q67_A 25 QVLFVLTILTLISGTIFYSTVEG---------LRPIDALYFSVVTLTTV 64 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSC---------CCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC---------CCHHHHHHHHHHHhcce
Confidence 34444555566777788775422 26899999999999975
No 39
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=95.42 E-value=0.0097 Score=59.23 Aligned_cols=37 Identities=8% Similarity=0.108 Sum_probs=28.4
Q ss_pred cCccceeeeEEeccc--chhhhhcccccchhhhhHHHHHHH
Q psy15554 221 RSPVNVIDIIATLSF--YTDILLQDKVQQSDILEFFSIIRI 259 (339)
Q Consensus 221 ~~~~al~~~i~tltt--Ygdi~p~t~~g~~~~l~~lrilri 259 (339)
+.++++||.++|++| |||+.|.|..|+ ++.++.++-+
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~--~~~~~~~~~g 89 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGY--LFASIVTVSG 89 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHH--HHHHHHHHHH
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHH--HHHHHHHHHH
Confidence 456899999999999 999999998876 4444444333
No 40
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=94.88 E-value=0.0007 Score=56.76 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhhhhheeccCCCCccCCCCCCcccchheeeeeeecc
Q psy15554 288 LLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSF 336 (339)
Q Consensus 288 ~~~~~~~~~~~~~s~~~y~~E~~~~~~~~~~f~s~~~~~ww~~~t~~~~ 336 (339)
.++..+++.++++|.++|++|++.+++ .+.++++++||+++|+|+.
T Consensus 37 ~~~~~~~~~~~~~a~~~~~~e~~~~~~---~~~~~~~a~yf~~~T~tTv 82 (166)
T 3pjs_K 37 AATVLLVIVLLAGSYLAVLAERGAPGA---QLITYPRALWWSVETATTV 82 (166)
T ss_dssp TTSSSSTTTTTTTSSSSSSTTSSSTTC---CCCSTTTTTTTTHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCc---ccCCHHHHHHHHHHHhccc
Confidence 334445566788889999999875444 4899999999999999975
No 41
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=94.16 E-value=0.012 Score=48.08 Aligned_cols=56 Identities=11% Similarity=0.166 Sum_probs=34.7
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhheeccCCCCccCCCCCCcccchheeeeeeecc
Q psy15554 272 LKILIHTFKAS-AKELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSF 336 (339)
Q Consensus 272 l~~L~~~~~~~-~~~l~~~~~~~~~~~~~~s~~~y~~E~~~~~~~~~~f~s~~~~~ww~~~t~~~~ 336 (339)
++.+.+.+++. +++.....+.+++.++++|+++|..+.+ -|+++|+||+.+|+|+.
T Consensus 11 l~rl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~---------~~~~~a~y~~~~t~tTv 67 (148)
T 3vou_A 11 LKRMLKACLRAWKDKEFQVLFVLTFLTLTSGTIFYSTVEG---------LRPLDALYFSVVTLTTV 67 (148)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHTSC---------CCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHcc
Confidence 33334444443 2234444455556667777777764422 36899999999999975
No 42
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=94.13 E-value=0.023 Score=52.83 Aligned_cols=30 Identities=10% Similarity=-0.107 Sum_probs=24.5
Q ss_pred eeecCccceeeeEEeccc--chhhhhc--ccccc
Q psy15554 218 QFIRSPVNVIDIIATLSF--YTDILLQ--DKVQQ 247 (339)
Q Consensus 218 ~f~~~~~al~~~i~tltt--Ygdi~p~--t~~g~ 247 (339)
...+.++++||+++|++| |||+.|. ++.|+
T Consensus 88 ~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~ 121 (340)
T 3sya_A 88 NLNGFVSAFLFSIETETTIGYGYRVITDKCPEGI 121 (340)
T ss_dssp CCCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHH
T ss_pred cccCHHHHHhhhheeeeeecCCCccCcCcCHHHH
Confidence 356678999999999999 9999996 44554
No 43
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=94.13 E-value=0.023 Score=51.44 Aligned_cols=26 Identities=15% Similarity=-0.014 Sum_probs=23.2
Q ss_pred CccceeeeEEeccc--chhhhhcccccc
Q psy15554 222 SPVNVIDIIATLSF--YTDILLQDKVQQ 247 (339)
Q Consensus 222 ~~~al~~~i~tltt--Ygdi~p~t~~g~ 247 (339)
..+++||.++|++| |||+.|.+..|+
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~ 229 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQ 229 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSC
T ss_pred hhhhhhheeeeeecccCCCCCCCCCccc
Confidence 45999999999999 999999998764
No 44
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=93.94 E-value=0.028 Score=51.63 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=23.8
Q ss_pred CccceeeeEEeccc--chhhhhcccccc
Q psy15554 222 SPVNVIDIIATLSF--YTDILLQDKVQQ 247 (339)
Q Consensus 222 ~~~al~~~i~tltt--Ygdi~p~t~~g~ 247 (339)
..+++||.++|++| |||+.|.+..|+
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~ 252 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQ 252 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTC
T ss_pred HHHHHHHHHhheeccccCCCCCCCcccc
Confidence 45899999999999 999999998887
No 45
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=93.41 E-value=0.00059 Score=63.50 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=28.0
Q ss_pred cCccceeeeEEeccc--chhhhhcccccchhhhhHHHHH
Q psy15554 221 RSPVNVIDIIATLSF--YTDILLQDKVQQSDILEFFSII 257 (339)
Q Consensus 221 ~~~~al~~~i~tltt--Ygdi~p~t~~g~~~~l~~lril 257 (339)
+.++++||+++|++| |||+.|.|..|| ++.++.++
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r--~~~~~~~~ 81 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGM--YFTVTLIV 81 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHH--HHHTHHHH
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHH--HHHHHHHH
Confidence 466999999999999 999999998877 44444443
No 46
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=92.98 E-value=0.019 Score=43.36 Aligned_cols=43 Identities=9% Similarity=0.175 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhheeccCCCCccCCCCCCcccchheeeeeeecc
Q psy15554 285 ELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSF 336 (339)
Q Consensus 285 ~l~~~~~~~~~~~~~~s~~~y~~E~~~~~~~~~~f~s~~~~~ww~~~t~~~~ 336 (339)
+.....+.++..+++.++++|..|.+ .|..+++||+.+|+|+.
T Consensus 5 ~~~~~~~~~~~~~~~~g~~~~~~~e~---------~~~~~a~yf~~~T~tTv 47 (97)
T 3ouf_A 5 KEFQVLFVLTILTLISGTIFYSTVEG---------LRPIDALYFSVVTLTTV 47 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC---------CCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHcc
Confidence 33444455555667777777765522 36899999999999874
No 47
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=92.30 E-value=0.031 Score=40.80 Aligned_cols=31 Identities=13% Similarity=0.139 Sum_probs=22.1
Q ss_pred HHHHHhhhhheeccCCCCccCCCCCCcccchheeeeeeecc
Q psy15554 296 GIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSF 336 (339)
Q Consensus 296 ~~~~~s~~~y~~E~~~~~~~~~~f~s~~~~~ww~~~t~~~~ 336 (339)
.++.++...++.|+. |.++++||+.+|+|+.
T Consensus 13 ~~~~g~~~~~~~e~~----------~~~~a~yf~~~T~tTv 43 (82)
T 3ldc_A 13 VIIYGTAGFHFIEGE----------SWTVSLYWTFVTIATV 43 (82)
T ss_dssp HHHHHHHHHHHHHCC----------CHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcC----------CHHHHHHHHHHHhccc
Confidence 334444444477852 6899999999999974
No 48
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=90.79 E-value=0.11 Score=48.43 Aligned_cols=29 Identities=10% Similarity=-0.127 Sum_probs=23.5
Q ss_pred eecCccceeeeEEeccc--chhhhhc--ccccc
Q psy15554 219 FIRSPVNVIDIIATLSF--YTDILLQ--DKVQQ 247 (339)
Q Consensus 219 f~~~~~al~~~i~tltt--Ygdi~p~--t~~g~ 247 (339)
..+.++++||.+.|++| |||+.|. ++.|+
T Consensus 92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~ 124 (343)
T 3spc_A 92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAV 124 (343)
T ss_dssp CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHH
T ss_pred cCCHHHHhheeeeeeEeecCCCccCCCCCHHHH
Confidence 55677899999999999 9999974 45444
No 49
>2lcm_A Voltage-dependent N-type calcium channel subunit; voltage sensor peptide, membrane protein; NMR {Homo sapiens}
Probab=90.43 E-value=0.082 Score=30.32 Aligned_cols=25 Identities=28% Similarity=0.573 Sum_probs=20.0
Q ss_pred hhHHHHHhhhhhhcccccccCcchh
Q psy15554 149 DILEFFSIIRILRLFKLTRHSPGLK 173 (339)
Q Consensus 149 ~~lr~lRllRllRilrl~r~~~~l~ 173 (339)
..++.+|.+|++|.+|.+...++++
T Consensus 4 ~~l~~lrtlR~LRpLr~isr~~gmk 28 (28)
T 2lcm_A 4 NTIKSLRVLRVLRPLKTIKRLPKLK 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred chhhHHHHHHHhcchHHHhhcccCC
Confidence 4678888888999998888777754
No 50
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=89.13 E-value=0.0095 Score=55.18 Aligned_cols=54 Identities=15% Similarity=0.369 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-eeccCCCCccCCCCCCcccchheeeeeeecc
Q psy15554 273 KILIHTFKASAKELTLLVFFLVLGIVVFASLVY-YAERLQTLDRLYEYSKLEIAIDYTSLKISSF 336 (339)
Q Consensus 273 ~~L~~~~~~~~~~l~~~~~~~~~~~~~~s~~~y-~~E~~~~~~~~~~f~s~~~~~ww~~~t~~~~ 336 (339)
+.+.+.+++..++.....+++++.++++++++| ++|+ .|.++++||+++|+|+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----------~~~~~a~y~~~~t~tTv 60 (336)
T 1lnq_A 6 EIIRKHLPRVLKVPATRILLLVLAVIIYGTAGFHFIEG----------ESWTVSLYWTFVTIATV 60 (336)
T ss_dssp -------------CCSSSTTTTTTSHHHHTTTTTTSSS----------CCSSTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCHHHHHHHHHHHhhcc
Confidence 334455555555544444445555666777777 6674 26889999999999974
No 51
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=87.60 E-value=0.19 Score=49.72 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhhheeccCCCCccCCCCCCcccchheeeeeeecc
Q psy15554 292 FLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSF 336 (339)
Q Consensus 292 ~~~~~~~~~s~~~y~~E~~~~~~~~~~f~s~~~~~ww~~~t~~~~ 336 (339)
++++...+++.+++..|+.. .|+++++||+++|+|..
T Consensus 30 ~~~~~~~~~~~~~~~~e~~~--------~~~~~~~y~~~~t~tTv 66 (565)
T 4gx0_A 30 MLLAYASIFRYLMWHLEGRA--------YSFMAGIYWTITVMTTL 66 (565)
T ss_dssp HHHHHHHHHHHHHHHHHCCC--------CCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhcCCC--------Cchhhhhheeeeeeeee
Confidence 33333344444555567531 36899999999999974
No 52
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=86.84 E-value=0.26 Score=45.81 Aligned_cols=65 Identities=9% Similarity=0.106 Sum_probs=36.5
Q ss_pred HHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHhhhhhe---eccCC----CCcc----CCCCCCcccchheeeeeeecc
Q psy15554 272 LKILIHTFKA-SAKELTLLVF-FLVLGIVVFASLVYY---AERLQ----TLDR----LYEYSKLEIAIDYTSLKISSF 336 (339)
Q Consensus 272 l~~L~~~~~~-~~~~l~~~~~-~~~~~~~~~s~~~y~---~E~~~----~~~~----~~~f~s~~~~~ww~~~t~~~~ 336 (339)
++.+.+++-+ +.+.+..++. ..++..++||.+-|. .|++- +|++ .+++.|+++++|||++|+|..
T Consensus 32 l~Dif~tlv~l~Wr~~ll~f~~~y~~swl~Fally~~ia~~~gdl~~~~~~~~~~~Cv~~~~sf~~af~fSv~T~TTv 109 (343)
T 3spc_A 32 IADMFTTCVDIRWRYMLLLFSLAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCVLQVNGFVAAFLFSIETQTTI 109 (343)
T ss_dssp --CHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCTTCCSSCCCSEETCCSHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHeeCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccCCHHHHhheeeeeeEee
Confidence 4445555544 3444444443 334445566655443 34432 2211 236899999999999999975
No 53
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=84.33 E-value=0.58 Score=43.41 Aligned_cols=65 Identities=8% Similarity=0.031 Sum_probs=37.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHhhhhhe---eccCCC---Cc----cCCCCCCcccchheeeeeeecc
Q psy15554 272 LKILIHTFKA-SAKELTLLVFF-LVLGIVVFASLVYY---AERLQT---LD----RLYEYSKLEIAIDYTSLKISSF 336 (339)
Q Consensus 272 l~~L~~~~~~-~~~~l~~~~~~-~~~~~~~~s~~~y~---~E~~~~---~~----~~~~f~s~~~~~ww~~~t~~~~ 336 (339)
++.+.+++-+ +.+.+..++.+ .++..++||.+-|. +.++.. ++ -.+++.|+++++|||++|+|..
T Consensus 30 ~~D~f~tlv~l~Wr~~llif~~~y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~Cv~~~~sf~~af~fSv~T~TTv 106 (340)
T 3sya_A 30 LTDIFTTLVDLKWRFNLLIFVMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCVTNLNGFVSAFLFSIETETTI 106 (340)
T ss_dssp HHTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCCSBSCCCSTTHHHHHHHHHHSCC
T ss_pred HHhHHHHheeCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhccccCHHHHHhhhheeeeee
Confidence 4555555544 33443333333 33444566655443 234321 11 1346899999999999999975
No 54
>1qg9_A Protein (sodium channel protein, brain II alpha subunit); transmembrane sodium channel, structure, transmembrane channel; NMR {Synthetic} SCOP: j.35.1.1
Probab=61.00 E-value=4.3 Score=22.60 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHHHHHhhhcc
Q psy15554 94 VELACNAWFTFELLVRAVVS 113 (339)
Q Consensus 94 ie~~~~~iF~~E~~lrl~~a 113 (339)
.|..++.+|++|.++|..+-
T Consensus 2 ~e~~F~~IYtfE~liKi~Ar 21 (26)
T 1qg9_A 2 VEYTFTGIYTFESLIKILAR 21 (26)
T ss_dssp CSCCHHHHHHHHHHHHHHTC
T ss_pred ceEEeeHHHHHHHHHHHHHh
Confidence 36689999999999999863
No 55
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=40.14 E-value=6.4 Score=30.01 Aligned_cols=38 Identities=8% Similarity=0.063 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhhhhheeccCCCCccCCCCCCcccch
Q psy15554 286 LTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAI 326 (339)
Q Consensus 286 l~~~~~~~~~~~~~~s~~~y~~E~~~~~~~~~~f~s~~~~~ 326 (339)
++.+..++++.++++|.+....-++..|+. |+|++.|+
T Consensus 6 ~~nv~~ll~l~~~ifAi~G~~lFg~~~~~~---F~~~~~s~ 43 (112)
T 4f4l_A 6 VGSVAALLTVVFYIAAVMATNLYGATFPEW---FGDLSKSL 43 (112)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTTTCHHH---HSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCcccc---ccCHHHHH
Confidence 455666666777777777777777766764 88887776
No 56
>2k44_A Hsapbk, K+-channel voltage-sensor paddle domain of calcium-activated potassium channel subunit...; membrane, micelle, solution structure; NMR {Synthetic}
Probab=35.80 E-value=5 Score=22.46 Aligned_cols=11 Identities=36% Similarity=0.748 Sum_probs=5.2
Q ss_pred HHhhhhhhccc
Q psy15554 154 FSIIRILRLFK 164 (339)
Q Consensus 154 lRllRllRilr 164 (339)
+|.+|.+|++.
T Consensus 15 LRFLRALRlm~ 25 (28)
T 2k44_A 15 LRFLRALRLIQ 25 (28)
T ss_dssp STTCTTHHHHS
T ss_pred HHHHHHHHccc
Confidence 44455554443
No 57
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural genomics, structural genomics conso SGC, CGMP biosynthesis; 2.08A {Homo sapiens}
Probab=20.26 E-value=20 Score=30.46 Aligned_cols=35 Identities=60% Similarity=0.837 Sum_probs=29.2
Q ss_pred CcccchHHHHhHHHhhccccceeeccccchhhhHh
Q psy15554 1 VVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVIL 35 (339)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 35 (339)
++.+||++|+.++++++.|+.+..+...+.+...|
T Consensus 37 ~~~~ln~~~~~~~~~i~~~~g~v~k~~GD~~ma~f 71 (225)
T 3uvj_A 37 VITMLNALYTRFDQQCGELDVYKVETIGDAYCVAG 71 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEEECCSTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCeEEEEeeCcEEEEEE
Confidence 35789999999999999999998888777665444
Done!