RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15554
(339 letters)
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 171 bits (434), Expect = 3e-49
Identities = 72/195 (36%), Positives = 111/195 (56%), Gaps = 9/195 (4%)
Query: 34 ILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSSFFISLDNST-AWVLHKEKTDPHAAFF 92
I+A+ SV I +S+VSF L+T P R ++ + + + +++ T FF
Sbjct: 183 IIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFF 242
Query: 93 YVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSD--- 149
VE C WF+FE LVR P+ F + +N+IDI+A + +Y I L + +
Sbjct: 243 IVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQ 302
Query: 150 ----ILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVY 205
+++ F I+RILR+FKL+RHS GL+IL T KAS +EL LL+FFL +G+++F+S VY
Sbjct: 303 NVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVY 362
Query: 206 YAERLQVSPNIFQFI 220
+AE + F I
Sbjct: 363 FAEA-DERDSQFPSI 376
Score = 117 bits (293), Expect = 2e-29
Identities = 48/127 (37%), Positives = 76/127 (59%), Gaps = 7/127 (5%)
Query: 190 VFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSD 249
FF+V + + + R P+ F + +N+IDI+A + +Y I L + +
Sbjct: 240 PFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVL 299
Query: 250 -------ILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFAS 302
+++ F I+RILR+FKL+RHS GL+IL T KAS +EL LL+FFL +G+++F+S
Sbjct: 300 QFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSS 359
Query: 303 LVYYAER 309
VY+AE
Sbjct: 360 AVYFAEA 366
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 128 bits (323), Expect = 2e-34
Identities = 32/187 (17%), Positives = 52/187 (27%), Gaps = 33/187 (17%)
Query: 34 ILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSSFFISLDNSTAWVLHKEKTDPHAAFFY 93
I A + +++ A T PDM A
Sbjct: 9 IYAPLNAVLAAPGLLAVAALTIPDMS-------------------------GRSRLALAA 43
Query: 94 VELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEF 153
+ + +L + R+P ID++A L LL
Sbjct: 44 LLAVIWGAYLLQLAATLLKRRAGVVRDRTPKIAIDVLAVLVPLAAFLLDG-------SPD 96
Query: 154 FSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQVS 213
+S+ + L K R S +L A+ L + + + A Y ER +
Sbjct: 97 WSLYCAVWLLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFAVALAAYVIER-DIQ 155
Query: 214 PNIFQFI 220
P F I
Sbjct: 156 PEKFGSI 162
Score = 101 bits (254), Expect = 9e-25
Identities = 26/121 (21%), Positives = 41/121 (33%), Gaps = 7/121 (5%)
Query: 189 LVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQS 248
L +L ++ A L+ A L R+P ID++A L LL
Sbjct: 39 LALAALLAVIWGAYLLQLAATLLKRRAGVVRDRTPKIAIDVLAVLVPLAAFLLDG----- 93
Query: 249 DILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAE 308
+S+ + L K R S +L A+ L + + + A Y E
Sbjct: 94 --SPDWSLYCAVWLLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFAVALAAYVIE 151
Query: 309 R 309
R
Sbjct: 152 R 152
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 89.2 bits (222), Expect = 4e-21
Identities = 21/186 (11%), Positives = 55/186 (29%), Gaps = 33/186 (17%)
Query: 37 VTSVFFICVSVVSFALKTHPDMRVPTIRNSSFFISLDNSTAWVLHKEKTDPHAAFFYVEL 96
+ + +SV+ ++ + + V+L
Sbjct: 12 LGVSYAALLSVIVVVVECTMQLSGEY-------------------------LVRLYLVDL 46
Query: 97 ACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSI 156
+ RA S + +++ + +I A + L++ L F +
Sbjct: 47 ILVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIE---GHLAGLGLFRL 101
Query: 157 IRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVF--ASLVYYAERLQVSP 214
+R+LR ++ + +A ++ F + + V A +Y E
Sbjct: 102 VRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEY-PDPN 160
Query: 215 NIFQFI 220
+ + +
Sbjct: 161 SSIKSV 166
Score = 68.4 bits (168), Expect = 1e-13
Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 9/115 (7%)
Query: 197 IVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSI 256
+++ YA R S + +++ + +I A + L++ L F +
Sbjct: 49 VIILW--ADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIE---GHLAGLGLFRL 101
Query: 257 IRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVF--ASLVYYAER 309
+R+LR ++ + +A ++ F + + V A +Y E
Sbjct: 102 VRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEY 156
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide,
structural genomics, structural genomics conso SGC,
CGMP biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 79.3 bits (196), Expect = 2e-17
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 1 VVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMV 33
V+ LN LYT FD+ DVYKVETIGDAY V
Sbjct: 37 VITMLNALYTRFDQQCGELDVYKVETIGDAYCV 69
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 76.1 bits (188), Expect = 2e-16
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 VVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMV 33
+V FL+ LY+ FD ++ + + K+E GD+YMV
Sbjct: 33 LVRFLDRLYSAFDELVDQHGLEKIEVSGDSYMV 65
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 71.2 bits (175), Expect = 1e-14
Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 1 VVNFLNDLYTLFDRIIKGYD---VYKVETIGDAYMV 33
+VN LNDLYT FD + VYKVET+GD YM
Sbjct: 39 IVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMT 74
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 70.0 bits (172), Expect = 3e-14
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 1 VVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVI 34
+V LN+L+ FD++ +++ +GD Y +
Sbjct: 57 LVMTLNELFARFDKLAAENHCLRIKILGDCYYCV 90
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET:
FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB:
1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B*
1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B*
3g82_B* 3maa_B* 1cul_B*
Length = 220
Score = 70.0 bits (172), Expect = 3e-14
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 1 VVNFLNDLYTLFDRII---KGYDVYKVETIGDAYMV 33
+ LN++ FD ++ K V K++TIG YM
Sbjct: 41 CLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMA 76
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase,
dimethylarsenic, lyase, membrane, transmembrane; 2.55A
{Chlamydomonas reinhardtii} PDB: 3et6_B
Length = 190
Score = 65.4 bits (160), Expect = 7e-13
Identities = 20/34 (58%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 1 VVNFLNDLYTLFDRIIKGY-DVYKVETIGDAYMV 33
V + L++LY FD I+ Y +YKVETIGDAYMV
Sbjct: 32 VXSLLDELYQRFDAAIEEYPQLYKVETIGDAYMV 65
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 54.1 bits (130), Expect = 3e-09
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 11/75 (14%)
Query: 146 QQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVY 205
+ + R+++L L RH L+ + LV+ ++ + L
Sbjct: 5 HHHPPMLSGLLARLVKLL-LGRHGSALQ---------WRAAGAATVLLVIVLLAGSYLAV 54
Query: 206 YAERLQVSPNIFQFI 220
AER
Sbjct: 55 LAER-GAPGAQLITY 68
Score = 53.8 bits (129), Expect = 5e-09
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 10/64 (15%)
Query: 246 QQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVY 305
+ + R+++L L RH L+ + LV+ ++ + L
Sbjct: 5 HHHPPMLSGLLARLVKLL-LGRHGSALQ---------WRAAGAATVLLVIVLLAGSYLAV 54
Query: 306 YAER 309
AER
Sbjct: 55 LAER 58
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
structure, membrane protein, metal transport; HET: PCA;
NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 155
Score = 52.1 bits (125), Expect = 2e-08
Identities = 13/73 (17%), Positives = 20/73 (27%), Gaps = 12/73 (16%)
Query: 150 ILEFFSIIRILRLFK--LTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYA 207
+ + RL K L RH L + LV+ ++ + L A
Sbjct: 23 HMPPMLSGLLARLVKLLLGRHGSALH---------WRAAGAATVLLVIVLLAGSYLAVLA 73
Query: 208 ERLQVSPNIFQFI 220
ER
Sbjct: 74 ER-GAPGAALISY 85
Score = 51.8 bits (124), Expect = 2e-08
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 11/62 (17%)
Query: 250 ILEFFSIIRILRLFK--LTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYA 307
+ + RL K L RH L + LV+ ++ + L A
Sbjct: 23 HMPPMLSGLLARLVKLLLGRHGSALH---------WRAAGAATVLLVIVLLAGSYLAVLA 73
Query: 308 ER 309
ER
Sbjct: 74 ER 75
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 2e-08
Identities = 65/390 (16%), Positives = 121/390 (31%), Gaps = 107/390 (27%)
Query: 6 NDLYTLF-DRIIKGYDVYKVETIGDAYMVILAVTSVFFICVSVVSFALKTHPDMRVPTIR 64
D+ ++F D + +D V+ D IL+ + I +
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQ---DMPKSILSKEEIDHI--------------IMSKDAV 61
Query: 65 NSSFFISLDNSTAWVLHKEKTDPHAAFFYVELACNAWFTFELLVRAVVSPNIFQFIRSPV 124
+ + + W L ++ + F V V+ N ++F+ SP+
Sbjct: 62 SGTLRL------FWTLLSKQEEMVQKF----------------VEEVLRIN-YKFLMSPI 98
Query: 125 NVIDIIATLSFYTDILLQDKVQQSDILEF--FSIIRILRLFKLTRH----SPGLKILIHT 178
++ I +D++ +D F +++ R+ KL + P +LI
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRL-YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 179 FKASAKE-LTLL--------------VFFLVLG--------IVVFASLVY-----YAERL 210
S K + L +F+L L + + L+Y + R
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 211 QVSPNIFQFIRSPVNVIDIIATLSFYTDILL-QDKVQQSDILEFFSI-IRIL---RLFKL 265
S NI I S + + Y + LL VQ + F++ +IL R ++
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 266 TRHSPGLK----ILIHTFKASAKELTLLVFFLVLGIVVFA-------------SLVYYAE 308
T L H + + L S++ AE
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII--AE 335
Query: 309 RLQ----TLDRL--YEYSKLEIAIDYTSLK 332
++ T D KL I+ +SL
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIE-SSLN 364
Score = 33.3 bits (75), Expect = 0.12
Identities = 48/245 (19%), Positives = 81/245 (33%), Gaps = 61/245 (24%)
Query: 121 RSPVNVIDIIATLSFYTDILLQDKVQQSD--ILEFFSII-RILRLFKLTRHSPGLKIL-- 175
SP V++++ L + D + S L SI + RL K + L +L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 176 ------IHTFKASAKELTLL-------VFFLVLGIVVFASLVYYAERLQVSPNIFQFIRS 222
+ F S K LL FL SL +++ L +
Sbjct: 253 VQNAKAWNAFNLSCK--ILLTTRFKQVTDFLSAATTTHISLDHHSMTL-----------T 299
Query: 223 PVNVIDIIATLSFYTDILLQD-KVQQSDILEF-FSII-RILRLFKLT----RHSPGLKIL 275
P V ++ Y D QD + SII +R T +H L
Sbjct: 300 PDEVKSLLLK---YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH-VNCDKL 355
Query: 276 IHTFKASAKELT----------LLVF-------FLVLGIVVFASLVYYAERLQTLDRLYE 318
++S L L VF ++L ++ F + + +++L++
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV--VNKLHK 413
Query: 319 YSKLE 323
YS +E
Sbjct: 414 YSLVE 418
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 52.9 bits (127), Expect = 2e-08
Identities = 8/33 (24%), Positives = 20/33 (60%)
Query: 1 VVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMV 33
+ + + + + +I Y Y+V+T+GD++M+
Sbjct: 34 MPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFMI 66
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid
semi-synthetic, membrane protein; HET: 1EM; 1.72A
{Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C*
1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C*
2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C*
3ifx_A* 1j95_A 2jk5_C* ...
Length = 122
Score = 48.9 bits (117), Expect = 1e-07
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 11/65 (16%)
Query: 156 IIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQVSPN 215
+ R+++L L RH L + LV+ ++ + L AER
Sbjct: 9 LARLVKLL-LGRHGSALH---------WRAAGAATVLLVIVLLAGSYLAVLAER-GAPGA 57
Query: 216 IFQFI 220
Sbjct: 58 QLITY 62
Score = 48.5 bits (116), Expect = 2e-07
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 10/54 (18%)
Query: 256 IIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAER 309
+ R+++L L RH L + LV+ ++ + L AER
Sbjct: 9 LARLVKLL-LGRHGSALH---------WRAAGAATVLLVIVLLAGSYLAVLAER 52
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 50.7 bits (121), Expect = 3e-07
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 16/69 (23%)
Query: 1 VVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVILAVTSVFFICVSVVSFAL-------- 52
+ + L L + V+ ++TIGDA M+ V ++ L
Sbjct: 238 LGHLAGRLAGLARDLTA-PPVWFIKTIGDAVML------VCPDPAPLLDTVLKLVEVVDT 290
Query: 53 -KTHPDMRV 60
P +R
Sbjct: 291 DNNFPRLRA 299
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane
protein; NMR {Aeropyrum pernix}
Length = 147
Score = 47.6 bits (113), Expect = 5e-07
Identities = 15/96 (15%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Query: 91 FFYVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDI 150
+ V+L + RA S + +++ + +I A + L++ +
Sbjct: 54 LYLVDLILVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIEGHLA---G 108
Query: 151 LEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKEL 186
L F ++R+LR ++ + +A +L
Sbjct: 109 LGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKL 144
Score = 39.5 bits (92), Expect = 4e-04
Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 187 TLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQ 246
L+ +LV I+V YA R S + +++ + +I A + L++ +
Sbjct: 50 YLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIEGHLA 107
Query: 247 QSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKEL 286
L F ++R+LR ++ + +A +L
Sbjct: 108 ---GLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKL 144
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB
complex, membrane protein; 1.90A {Aeropyrum pernix}
SCOP: f.14.1.1
Length = 132
Score = 44.5 bits (105), Expect = 5e-06
Identities = 15/96 (15%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Query: 91 FFYVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDI 150
+ V+L + RA S + +++ + +I A + L++ +
Sbjct: 39 LYLVDLILVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIEGHLA---G 93
Query: 151 LEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKEL 186
L F ++R+LR ++ + +A +L
Sbjct: 94 LGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKL 129
Score = 34.5 bits (79), Expect = 0.012
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 187 TLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQ 246
L+ +LV I+V YA R S + +++ + +I A + L++ +
Sbjct: 35 YLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIEGHLA 92
Query: 247 QSDILEFFSIIRILRLFKLTR 267
+ ++R LR+ +
Sbjct: 93 GLGLFRLVRLLRFLRILLIIS 113
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium
channel, sodium selective, gated ION channel; HET: BNG
PX4; 3.05A {Alpha proteobacterium HIMB114}
Length = 229
Score = 44.2 bits (105), Expect = 2e-05
Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 6/113 (5%)
Query: 89 AAFFYVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQS 148
++ +F E+L+R + F +S N+ D + I +
Sbjct: 42 ETIHLLDYGITIFFVIEILIRFIGEKQKADFFKSGWNIFDTVIVAISLIPIP------NN 95
Query: 149 DILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFA 201
++RI R+ +L P LK +I S + + + L + + ++A
Sbjct: 96 SSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYA 148
Score = 34.6 bits (80), Expect = 0.031
Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 217 FQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILI 276
F +S N+ D + I + ++RI R+ +L P LK +I
Sbjct: 70 ADFFKSGWNIFDTVIVAISLIPIP------NNSSFLVLRLLRIFRVLRLISVIPELKQII 123
Query: 277 HTFKASAKELTLLVFFLVLGIVVFA 301
S + + + L + + ++A
Sbjct: 124 EAILESVRRVFFVSLLLFIILYIYA 148
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated
sodium-selective ION C membrane, metal transport; HET:
PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A*
Length = 285
Score = 41.6 bits (98), Expect = 2e-04
Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 12/113 (10%)
Query: 90 AFFYVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVID-IIATLSFYTDILLQDKVQQS 148
FT E+++R V F + P ++ D + +S V S
Sbjct: 62 YTTLFNQIVITIFTIEIILRIYVHR--ISFFKDPWSLFDFFVVAISL---------VPTS 110
Query: 149 DILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFA 201
E ++R+LRLF+L P ++ ++ + + ++ + L +FA
Sbjct: 111 SGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFA 163
Score = 35.9 bits (83), Expect = 0.014
Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 217 FQFIRSPVNVID-IIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKIL 275
F + P ++ D + +S V S E ++R+LRLF+L P ++ +
Sbjct: 87 ISFFKDPWSLFDFFVVAISL---------VPTSSGFEILRVLRVLRLFRLVTAVPQMRKI 137
Query: 276 IHTFKASAKELTLLVFFLVLGIVVFA 301
+ + + ++ + L +FA
Sbjct: 138 VSALISVIPGMLSVIALMTLFFYIFA 163
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 39.5 bits (92), Expect = 3e-04
Identities = 6/39 (15%), Positives = 11/39 (28%), Gaps = 1/39 (2%)
Query: 182 SAKELTLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFI 220
+ LV+ ++ + L AER
Sbjct: 4 HWRAAGAATVLLVIVLLAGSYLAVLAER-GAPGAQLITY 41
Score = 38.7 bits (90), Expect = 5e-04
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 282 SAKELTLLVFFLVLGIVVFASLVYYAER 309
+ LV+ ++ + L AER
Sbjct: 4 HWRAAGAATVLLVIVLLAGSYLAVLAER 31
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.003
Identities = 21/138 (15%), Positives = 43/138 (31%), Gaps = 46/138 (33%)
Query: 197 IVVFASLVYYAERLQVSPNIFQFIRS-------------PVNVIDIIAT-LSFYTDILLQ 242
++V + + A +LQ QF + P +++ L + +
Sbjct: 20 LLVPTASFFIASQLQE-----QFNKILPEPTEGFAADDEPTTPAELVGKFLGY-----VS 69
Query: 243 DKVQQSDILEFFSIIR-ILRLFKLTRHSPGLKIL----IHTFKAS---AKELTLLVFFLV 294
V+ S + +F ++ L F+ L IH A + TL+ +
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENC-------YLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 295 LGIVVFASLVYYAERLQT 312
+ Y R+
Sbjct: 123 I-------KNYITARIMA 133
Score = 37.3 bits (86), Expect = 0.007
Identities = 28/142 (19%), Positives = 41/142 (28%), Gaps = 38/142 (26%)
Query: 1 VVNFLNDLYTLFD-----RIIKGYDVYKVETIGDAYMVILAVTSVFFICVSVVSFALKTH 55
V+N +L F RI + Y ETI D + + + +F
Sbjct: 1665 VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF---RS 1721
Query: 56 PDMRV-------PTIRNSSFFISLDNSTAW-VLHKEKTDPHAAFF-------YVELACNA 100
+ P + + A+ L + P A F Y LA A
Sbjct: 1722 EKGLLSATQFTQPAL----TLMEK---AAFEDLKSKGLIPADATFAGHSLGEYAALASLA 1774
Query: 101 -WFTFELLVRAVVSPNIFQFIR 121
+ E LV V F R
Sbjct: 1775 DVMSIESLVEVV-------FYR 1789
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer,
ION transport, ionic channel, membrane, transmembrane,
transport; NMR {Escherichia coli} PDB: 2kb1_A
Length = 103
Score = 30.1 bits (68), Expect = 0.26
Identities = 5/37 (13%), Positives = 8/37 (21%), Gaps = 1/37 (2%)
Query: 184 KELTLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFI 220
+E L + + AER
Sbjct: 6 REAQKAEEELQKVLEEASKKAVEAER-GAPGAALISY 41
Score = 30.1 bits (68), Expect = 0.34
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 284 KELTLLVFFLVLGIVVFASLVYYAER 309
+E L + + AER
Sbjct: 6 REAQKAEEELQKVLEEASKKAVEAER 31
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology
domain, CHD, RV1900C; 2.31A {Mycobacterium
tuberculosis} PDB: 1ybu_A*
Length = 184
Score = 29.9 bits (68), Expect = 0.75
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 1 VVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVI 34
+ L++ T+ I+ + +V T GD ++
Sbjct: 40 WRDLLDNHDTIVCHEIQRFGGREVNTAGDGFVAT 73
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 30.5 bits (68), Expect = 0.84
Identities = 6/64 (9%), Positives = 15/64 (23%), Gaps = 1/64 (1%)
Query: 158 RILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFL-VLGIVVFASLVYYAERLQVSPNI 216
+ + S L L T + + L + + +Y ++
Sbjct: 16 NVQHGNLGSETSRYLSDLFTTLVDLKWRWFFVSLAVLFLLLNTAFATLYMLGSAPIANQF 75
Query: 217 FQFI 220
Sbjct: 76 PAGF 79
Score = 29.3 bits (65), Expect = 1.9
Identities = 6/52 (11%), Positives = 13/52 (25%), Gaps = 1/52 (1%)
Query: 258 RILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFL-VLGIVVFASLVYYAE 308
+ + S L L T + + L + + +Y
Sbjct: 16 NVQHGNLGSETSRYLSDLFTTLVDLKWRWFFVSLAVLFLLLNTAFATLYMLG 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.144 0.413
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,150,100
Number of extensions: 307143
Number of successful extensions: 914
Number of sequences better than 10.0: 1
Number of HSP's gapped: 835
Number of HSP's successfully gapped: 44
Length of query: 339
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 245
Effective length of database: 4,077,219
Effective search space: 998918655
Effective search space used: 998918655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.1 bits)