RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15554
         (339 letters)



>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum
           pernix [TaxId: 56636]}
          Length = 132

 Score = 43.0 bits (101), Expect = 6e-06
 Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 5/106 (4%)

Query: 81  HKEKTDPHAAFFYVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDIL 140
            +   +     + V+L        +   RA  S +   +++    + +I A +      L
Sbjct: 29  MQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLAL 86

Query: 141 LQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKEL 186
           ++        L  F ++R+LR  ++          +     +A +L
Sbjct: 87  IE---GHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKL 129



 Score = 36.8 bits (85), Expect = 9e-04
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 5/97 (5%)

Query: 190 VFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSD 249
             +LV  I+V      YA R   S +   +++    + +I A +      L++       
Sbjct: 38  RLYLVDLILVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIE---GHLA 92

Query: 250 ILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKEL 286
            L  F ++R+LR  ++          +     +A +L
Sbjct: 93  GLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKL 129


>d1fx2a_ d.58.29.1 (A:) Receptor-type monomeric adenylyl cyclase
          {Trypanosome (Trypanosoma brucei), different isoform
          [TaxId: 5691]}
          Length = 235

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 8/34 (23%), Positives = 20/34 (58%)

Query: 1  VVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVI 34
          + + +   + +   +I  Y  Y+V+T+GD++M+ 
Sbjct: 34 MPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFMIA 67


>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
           coelicolor [TaxId: 1902]}
          Length = 103

 Score = 31.1 bits (70), Expect = 0.056
 Identities = 9/77 (11%), Positives = 27/77 (35%), Gaps = 6/77 (7%)

Query: 184 KELTLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSFYTDILLQD 243
           +        LV+ ++  + L   AER      +  + R+    ++   T+ +       D
Sbjct: 6   RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGY------GD 59

Query: 244 KVQQSDILEFFSIIRIL 260
               +      +++ ++
Sbjct: 60  LYPVTLWGRCVAVVVMV 76



 Score = 26.8 bits (59), Expect = 1.6
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 284 KELTLLVFFLVLGIVVFASLVYYAER 309
           +        LV+ ++  + L   AER
Sbjct: 6   RAAGAATVLLVIVLLAGSYLAVLAER 31


>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces
           coelicolor [TaxId: 1902]}
          Length = 57

 Score = 28.7 bits (64), Expect = 0.13
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 184 KELTLLVFFLVLGIVVFASLVYYAER 209
           +        LV+ ++  + L   AER
Sbjct: 6   RAAGAATVLLVIVLLAGSYLAVLAER 31



 Score = 28.7 bits (64), Expect = 0.13
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 284 KELTLLVFFLVLGIVVFASLVYYAER 309
           +        LV+ ++  + L   AER
Sbjct: 6   RAAGAATVLLVIVLLAGSYLAVLAER 31


>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium
           yoelii [TaxId: 5861]}
          Length = 186

 Score = 26.4 bits (57), Expect = 3.7
 Identities = 6/28 (21%), Positives = 13/28 (46%)

Query: 3   NFLNDLYTLFDRIIKGYDVYKVETIGDA 30
            +L+    +F RII    +  ++ I + 
Sbjct: 138 EWLDGKNVVFGRIIDNDSLLLLKKIENV 165


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.144    0.413 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,241,716
Number of extensions: 56776
Number of successful extensions: 170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 9
Length of query: 339
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,226,816
Effective search space: 310384448
Effective search space used: 310384448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.4 bits)