BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15555
(488 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 8/142 (5%)
Query: 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAM 384
NL++I G + + + L +E + F P ++ + I
Sbjct: 256 NLRVIICGGPSGPN--ATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPS 313
Query: 385 WNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILH 444
+NE FG+ +E A+G +IA + GG + I + + ET G L +A L
Sbjct: 314 FNESFGLVAMEAQASGTPVIAARVGG--LPIAVAEGET---GLLVDGHSPHAWADALATL 368
Query: 445 LSQD-TKTRISQNAVSSVDRFS 465
L D T+ R+ ++AV FS
Sbjct: 369 LDDDETRIRMGEDAVEHARTFS 390
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 8/142 (5%)
Query: 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAM 384
NL++I G + + + L +E + F P ++ + I
Sbjct: 276 NLRVIICGGPSGPN--ATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPS 333
Query: 385 WNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILH 444
+NE FG+ +E A+G +IA + GG + I + + ET G L +A L
Sbjct: 334 FNESFGLVAMEAQASGTPVIAARVGG--LPIAVAEGET---GLLVDGHSPHAWADALATL 388
Query: 445 LSQD-TKTRISQNAVSSVDRFS 465
L D T+ R+ ++AV FS
Sbjct: 389 LDDDETRIRMGEDAVEHARTFS 410
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 21/103 (20%)
Query: 387 EHFGIGIVECMAAGLIMIAHKSGGP-------KMDIVI--EDPETCRNGFLACDEVEYAQ 437
E FG+ VE MA+GL + ++GGP K +++ EDPE G L E E
Sbjct: 369 EPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFESEETW 428
Query: 438 TIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPL 480
+ + K R+ + R++ +E G+L Q +
Sbjct: 429 SA-----YQEKGKQRVEE-------RYTWQETARGYLEVIQEI 459
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|B Chain B, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|C Chain C, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|D Chain D, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXR|A Chain A, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|2UXR|B Chain B, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|4AOV|A Chain A, Dpidh-Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 13/128 (10%)
Query: 97 ASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALL 156
A+ I K+ QRF I+ + F Y+ KF A + ++TL+ + M+ +L
Sbjct: 207 ATKDTISKQYDQRFKIIFEEI---FAQEYKEKFAAAGIEYFYTLIDDVVARMMKTEGGML 263
Query: 157 ----SFQPDIYIDTMGYAF-TYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNS 211
++ D+ D + AF + + S + S Y Y V R H
Sbjct: 264 WACKNYDGDVMSDMVASAFGSLAMMSSVLVSPYG-YFEYEAAH----GTVQRHYYQHLKG 318
Query: 212 QRVANNPI 219
+R + NP+
Sbjct: 319 ERTSTNPV 326
>pdb|1RKU|A Chain A, Crystal Structure Of Thrh Gene Product Of Pseudomonas
Aeruginosa
pdb|1RKU|B Chain B, Crystal Structure Of Thrh Gene Product Of Pseudomonas
Aeruginosa
pdb|1RKV|A Chain A, Structure Of Phosphate Complex Of Thrh From Pseudomonas
Aeruginosa
pdb|1RKV|B Chain B, Structure Of Phosphate Complex Of Thrh From Pseudomonas
Aeruginosa
Length = 206
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 21/127 (16%)
Query: 158 FQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANN 217
FQ I DT Y F+ PL +G + C+ ++ + RV+ + Q+
Sbjct: 85 FQVVILSDTF-YEFSQPLMRQLGFPTLLCH--------KLEIDDSDRVVGYQLRQKDPKR 135
Query: 218 PILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQ---LKTYKLYPPCD 274
+ +FK YY+V A S Y+D M+ +E H L++ ++ + +P
Sbjct: 136 QSVIAFKSLYYRVIAAGDS----YNDTTML----SEAHAGILFHAPENVIREFPQFPAVH 187
Query: 275 T-EDLKK 280
T EDLK+
Sbjct: 188 TYEDLKR 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,195,155
Number of Sequences: 62578
Number of extensions: 593180
Number of successful extensions: 1042
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1040
Number of HSP's gapped (non-prelim): 7
length of query: 488
length of database: 14,973,337
effective HSP length: 103
effective length of query: 385
effective length of database: 8,527,803
effective search space: 3283204155
effective search space used: 3283204155
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)