Query psy15555
Match_columns 488
No_of_seqs 361 out of 2754
Neff 10.5
Searched_HMMs 46136
Date Sat Aug 17 00:17:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15555.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15555hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02949 transferase, transfer 100.0 1.5E-60 3.2E-65 466.4 50.0 429 51-483 32-460 (463)
2 KOG1387|consensus 100.0 1.4E-58 3E-63 404.3 46.2 426 46-484 37-463 (465)
3 cd03806 GT1_ALG11_like This fa 100.0 1.6E-54 3.4E-59 424.2 44.7 413 54-471 2-418 (419)
4 COG1519 KdtA 3-deoxy-D-manno-o 100.0 9.7E-42 2.1E-46 312.3 33.7 343 55-479 51-417 (419)
5 cd03796 GT1_PIG-A_like This fa 100.0 1.9E-39 4.1E-44 318.1 37.0 366 54-484 1-372 (398)
6 cd03805 GT1_ALG2_like This fam 100.0 3.9E-39 8.4E-44 316.5 38.6 376 53-473 1-392 (392)
7 PRK10307 putative glycosyl tra 100.0 2.3E-38 5E-43 312.2 37.2 387 53-483 1-411 (412)
8 PRK15427 colanic acid biosynth 100.0 4.7E-38 1E-42 306.7 37.0 284 152-480 111-406 (406)
9 TIGR03088 stp2 sugar transfera 100.0 6.9E-38 1.5E-42 305.4 37.7 359 53-481 2-374 (374)
10 PLN02871 UDP-sulfoquinovose:DA 100.0 5.7E-38 1.2E-42 312.9 35.1 360 50-483 56-438 (465)
11 TIGR03449 mycothiol_MshA UDP-N 100.0 1.6E-37 3.5E-42 306.0 37.0 372 64-482 18-404 (405)
12 cd04962 GT1_like_5 This family 100.0 2.4E-37 5.2E-42 301.5 36.2 356 53-480 1-371 (371)
13 cd03818 GT1_ExpC_like This fam 100.0 2.2E-36 4.8E-41 296.4 37.5 370 54-474 1-395 (396)
14 PRK05749 3-deoxy-D-manno-octul 100.0 9.5E-37 2.1E-41 301.4 33.7 350 53-483 50-423 (425)
15 TIGR02472 sucr_P_syn_N sucrose 100.0 5.7E-36 1.2E-40 296.1 36.3 381 64-478 24-439 (439)
16 PRK15179 Vi polysaccharide bio 100.0 2.4E-35 5.2E-40 298.1 40.4 374 50-478 278-692 (694)
17 TIGR02149 glgA_Coryne glycogen 100.0 9.4E-36 2E-40 292.0 36.2 364 53-481 1-388 (388)
18 PRK15484 lipopolysaccharide 1, 100.0 3.4E-35 7.3E-40 285.0 35.4 227 240-481 138-379 (380)
19 cd05844 GT1_like_7 Glycosyltra 100.0 2E-35 4.4E-40 287.6 33.8 283 151-475 74-366 (367)
20 TIGR02468 sucrsPsyn_pln sucros 100.0 9.5E-35 2E-39 298.5 40.0 407 51-484 168-675 (1050)
21 PRK09922 UDP-D-galactose:(gluc 100.0 1.1E-35 2.3E-40 287.4 31.1 348 53-482 1-358 (359)
22 cd03800 GT1_Sucrose_synthase T 100.0 8.5E-35 1.9E-39 286.4 36.3 364 64-474 19-397 (398)
23 PLN02939 transferase, transfer 100.0 5.5E-34 1.2E-38 288.4 41.3 413 50-485 479-972 (977)
24 cd03792 GT1_Trehalose_phosphor 100.0 2.4E-34 5.2E-39 279.8 36.8 357 54-480 1-372 (372)
25 PLN02316 synthase/transferase 100.0 4.4E-34 9.5E-39 294.6 39.3 382 49-481 584-1035(1036)
26 PRK15490 Vi polysaccharide bio 100.0 6.3E-34 1.4E-38 274.4 35.3 286 147-479 268-575 (578)
27 cd03809 GT1_mtfB_like This fam 100.0 1.1E-34 2.3E-39 282.0 30.2 353 54-474 1-364 (365)
28 TIGR02470 sucr_synth sucrose s 100.0 1.4E-33 3E-38 284.6 39.0 394 51-477 254-745 (784)
29 cd03822 GT1_ecORF704_like This 100.0 4.1E-34 8.8E-39 278.0 33.7 350 54-478 1-366 (366)
30 cd03820 GT1_amsD_like This fam 100.0 3.3E-34 7.1E-39 276.1 31.8 344 54-474 1-347 (348)
31 cd03816 GT1_ALG1_like This fam 100.0 1.8E-33 3.9E-38 276.0 37.1 365 52-467 3-404 (415)
32 cd04955 GT1_like_6 This family 100.0 1E-33 2.2E-38 275.2 34.4 352 54-478 1-363 (363)
33 cd03801 GT1_YqgM_like This fam 100.0 2.1E-33 4.6E-38 272.6 36.6 362 54-478 1-374 (374)
34 cd03799 GT1_amsK_like This is 100.0 1.5E-33 3.3E-38 273.0 35.4 342 54-472 1-354 (355)
35 cd03807 GT1_WbnK_like This fam 100.0 2.4E-33 5.1E-38 272.1 36.4 350 54-478 1-365 (365)
36 cd03819 GT1_WavL_like This fam 100.0 1E-33 2.3E-38 274.2 33.2 328 65-468 9-354 (355)
37 cd03795 GT1_like_4 This family 100.0 6.1E-34 1.3E-38 276.0 31.3 343 54-470 1-357 (357)
38 PRK00654 glgA glycogen synthas 100.0 1.6E-33 3.4E-38 280.4 34.6 396 53-482 1-465 (466)
39 TIGR03087 stp1 sugar transfera 100.0 5.2E-33 1.1E-37 272.5 36.7 373 55-478 1-395 (397)
40 cd03821 GT1_Bme6_like This fam 100.0 4.2E-33 9.1E-38 271.3 35.7 361 54-474 1-374 (375)
41 PRK14099 glycogen synthase; Pr 100.0 4.8E-33 1.1E-37 275.7 36.5 402 51-484 2-483 (485)
42 cd03804 GT1_wbaZ_like This fam 100.0 9.5E-34 2.1E-38 273.7 30.2 346 54-473 1-350 (351)
43 cd03813 GT1_like_3 This family 100.0 1.5E-33 3.3E-38 281.2 32.4 295 158-478 172-475 (475)
44 cd04951 GT1_WbdM_like This fam 100.0 4.9E-33 1.1E-37 270.0 35.2 344 54-478 1-359 (360)
45 PRK14098 glycogen synthase; Pr 100.0 8.8E-33 1.9E-37 274.1 36.1 400 51-482 4-488 (489)
46 cd03808 GT1_cap1E_like This fa 100.0 8.1E-33 1.8E-37 267.5 35.1 350 54-474 1-358 (359)
47 PRK10125 putative glycosyl tra 100.0 6.5E-33 1.4E-37 269.4 33.4 373 53-480 1-405 (405)
48 cd03814 GT1_like_2 This family 100.0 2.6E-33 5.6E-38 272.1 30.7 352 54-478 1-364 (364)
49 TIGR02095 glgA glycogen/starch 100.0 8.2E-33 1.8E-37 276.7 34.9 400 53-480 1-473 (473)
50 cd03812 GT1_CapH_like This fam 100.0 4E-33 8.7E-38 270.4 31.6 334 54-461 1-346 (358)
51 cd03817 GT1_UGDG_like This fam 100.0 1E-32 2.3E-37 268.6 34.4 361 54-479 1-373 (374)
52 PLN00142 sucrose synthase 100.0 1.1E-32 2.3E-37 278.1 34.1 291 158-477 407-768 (815)
53 cd03802 GT1_AviGT4_like This f 100.0 1.3E-32 2.7E-37 264.4 32.7 327 53-478 1-335 (335)
54 cd03791 GT1_Glycogen_synthase_ 100.0 9.6E-33 2.1E-37 277.5 31.5 396 54-478 1-475 (476)
55 cd03798 GT1_wlbH_like This fam 100.0 2.7E-32 5.8E-37 265.5 33.3 362 55-480 1-377 (377)
56 cd03794 GT1_wbuB_like This fam 100.0 1.1E-31 2.3E-36 263.0 35.6 372 54-473 1-393 (394)
57 cd03823 GT1_ExpE7_like This fa 100.0 9.7E-32 2.1E-36 260.4 33.0 349 54-478 1-358 (359)
58 cd03811 GT1_WabH_like This fam 100.0 6.2E-32 1.3E-36 260.6 31.4 339 54-465 1-352 (353)
59 TIGR02918 accessory Sec system 100.0 7.8E-32 1.7E-36 266.7 31.3 281 153-480 205-500 (500)
60 cd03825 GT1_wcfI_like This fam 100.0 1.8E-31 4E-36 259.5 32.4 345 53-480 1-365 (365)
61 PLN02846 digalactosyldiacylgly 100.0 7.3E-31 1.6E-35 253.0 34.7 362 51-478 3-390 (462)
62 KOG1111|consensus 100.0 1.2E-31 2.6E-36 237.3 20.0 362 54-484 2-371 (426)
63 PLN02275 transferase, transfer 100.0 2.5E-29 5.5E-34 243.3 32.8 253 155-443 96-371 (371)
64 cd04946 GT1_AmsK_like This fam 100.0 9.7E-30 2.1E-34 249.0 30.2 220 236-474 178-406 (407)
65 cd04949 GT1_gtfA_like This fam 100.0 4.1E-30 8.9E-35 250.5 27.2 273 157-473 97-372 (372)
66 PLN02501 digalactosyldiacylgly 100.0 2.7E-28 5.8E-33 237.9 33.5 272 149-477 424-707 (794)
67 PHA01630 putative group 1 glyc 100.0 2E-28 4.3E-33 230.6 26.8 218 235-479 87-330 (331)
68 PRK00726 murG undecaprenyldiph 100.0 2.5E-26 5.5E-31 222.2 28.6 338 53-478 2-356 (357)
69 TIGR02400 trehalose_OtsA alpha 100.0 3.1E-25 6.7E-30 217.0 32.2 284 153-478 120-455 (456)
70 cd03788 GT1_TPS Trehalose-6-Ph 99.9 1.2E-25 2.6E-30 222.0 28.5 282 155-477 126-459 (460)
71 KOG0853|consensus 99.9 1.6E-25 3.4E-30 212.2 26.0 296 158-482 144-470 (495)
72 PHA01633 putative glycosyl tra 99.9 1.1E-25 2.3E-30 209.2 23.5 212 240-475 91-335 (335)
73 cd03785 GT1_MurG MurG is an N- 99.9 1.3E-24 2.7E-29 210.0 29.0 324 63-471 7-349 (350)
74 PRK13609 diacylglycerol glucos 99.9 9.8E-25 2.1E-29 212.8 25.8 264 149-479 94-371 (380)
75 TIGR01133 murG undecaprenyldip 99.9 2.3E-24 4.9E-29 208.1 26.7 329 53-471 1-346 (348)
76 PRK13608 diacylglycerol glucos 99.9 5.9E-24 1.3E-28 206.9 27.8 267 149-482 94-374 (391)
77 PLN02605 monogalactosyldiacylg 99.9 6.6E-24 1.4E-28 206.4 27.5 264 149-477 90-379 (382)
78 PLN03063 alpha,alpha-trehalose 99.9 8.3E-23 1.8E-27 212.1 29.7 289 153-482 140-480 (797)
79 cd03793 GT1_Glycogen_synthase_ 99.9 1.7E-22 3.8E-27 195.6 29.4 313 157-482 146-589 (590)
80 cd04950 GT1_like_1 Glycosyltra 99.9 5.4E-22 1.2E-26 192.5 27.7 214 233-479 145-371 (373)
81 PF00534 Glycos_transf_1: Glyc 99.9 3.6E-23 7.8E-28 178.4 16.3 159 285-460 11-172 (172)
82 PRK14501 putative bifunctional 99.9 8.7E-22 1.9E-26 205.3 27.3 289 153-483 126-466 (726)
83 COG0297 GlgA Glycogen synthase 99.9 6.4E-20 1.4E-24 177.3 31.2 405 53-484 1-482 (487)
84 TIGR02398 gluc_glyc_Psyn gluco 99.9 7.1E-20 1.5E-24 177.9 29.8 286 153-479 125-482 (487)
85 PRK00025 lpxB lipid-A-disaccha 99.9 2.8E-20 6E-25 181.7 26.7 343 52-482 1-376 (380)
86 TIGR00236 wecB UDP-N-acetylglu 99.9 3.1E-20 6.8E-25 180.0 24.1 256 149-457 76-345 (365)
87 PRK09814 beta-1,6-galactofuran 99.9 1.2E-19 2.7E-24 172.8 27.7 250 153-472 57-324 (333)
88 cd01635 Glycosyltransferase_GT 99.9 3.5E-20 7.6E-25 167.4 22.5 120 294-429 109-229 (229)
89 KOG2941|consensus 99.8 1.2E-17 2.7E-22 147.9 30.3 355 62-467 20-429 (444)
90 cd03786 GT1_UDP-GlcNAc_2-Epime 99.8 4.1E-19 8.8E-24 172.5 22.2 268 148-476 77-361 (363)
91 PLN03064 alpha,alpha-trehalose 99.8 1.5E-17 3.3E-22 171.9 27.8 289 153-481 224-563 (934)
92 COG0438 RfaG Glycosyltransfera 99.8 3.4E-17 7.4E-22 157.9 28.5 225 241-482 150-379 (381)
93 TIGR03713 acc_sec_asp1 accesso 99.8 4.5E-18 9.7E-23 168.6 22.1 216 239-477 270-519 (519)
94 TIGR00215 lpxB lipid-A-disacch 99.8 2.6E-16 5.6E-21 152.4 25.5 266 138-465 68-370 (385)
95 COG0707 MurG UDP-N-acetylgluco 99.7 3.4E-15 7.4E-20 140.6 30.1 326 64-473 9-351 (357)
96 PF13692 Glyco_trans_1_4: Glyc 99.7 7E-17 1.5E-21 133.0 8.8 130 289-444 2-134 (135)
97 TIGR03492 conserved hypothetic 99.7 4.2E-14 9E-19 137.1 24.0 355 67-473 8-392 (396)
98 PF00982 Glyco_transf_20: Glyc 99.6 6.1E-13 1.3E-17 130.2 27.7 290 153-478 134-473 (474)
99 PRK10117 trehalose-6-phosphate 99.6 8.6E-13 1.9E-17 127.3 27.3 291 153-481 116-455 (474)
100 PF05693 Glycogen_syn: Glycoge 99.6 2.4E-13 5.2E-18 131.6 21.6 250 233-484 213-586 (633)
101 PRK12446 undecaprenyldiphospho 99.6 3.5E-12 7.5E-17 121.9 26.9 321 63-478 9-350 (352)
102 TIGR02094 more_P_ylases alpha- 99.5 7.4E-12 1.6E-16 126.1 29.0 184 287-477 387-598 (601)
103 PF04413 Glycos_transf_N: 3-De 99.5 3.6E-14 7.8E-19 121.5 10.2 157 54-272 22-180 (186)
104 TIGR02919 accessory Sec system 99.5 3.4E-12 7.5E-17 123.8 24.7 192 240-467 238-432 (438)
105 COG0380 OtsA Trehalose-6-phosp 99.5 1.1E-10 2.3E-15 112.4 31.1 290 153-479 140-479 (486)
106 PLN02205 alpha,alpha-trehalose 99.5 3.3E-11 7.1E-16 126.1 28.1 292 153-481 193-553 (854)
107 PF13524 Glyco_trans_1_2: Glyc 99.4 1.1E-12 2.4E-17 99.6 8.5 90 380-475 2-92 (92)
108 cd04299 GT1_Glycogen_Phosphory 99.3 1.4E-09 3.1E-14 111.8 29.5 185 289-480 478-691 (778)
109 PF13439 Glyco_transf_4: Glyco 99.3 1E-11 2.2E-16 107.1 11.2 175 55-278 1-176 (177)
110 TIGR03590 PseG pseudaminic aci 99.3 9.4E-10 2E-14 101.7 23.2 261 54-411 1-271 (279)
111 PF13844 Glyco_transf_41: Glyc 99.3 1.2E-08 2.5E-13 98.5 30.4 178 286-480 282-467 (468)
112 COG3914 Spy Predicted O-linked 99.3 2E-09 4.3E-14 103.1 24.0 343 48-483 255-617 (620)
113 COG0763 LpxB Lipid A disacchar 99.3 1.7E-09 3.6E-14 99.8 22.6 320 53-460 2-358 (381)
114 TIGR03568 NeuC_NnaA UDP-N-acet 99.3 1.6E-08 3.5E-13 97.3 30.2 267 149-476 83-364 (365)
115 PF13528 Glyco_trans_1_3: Glyc 99.3 2.1E-09 4.5E-14 102.3 23.5 224 148-442 83-317 (318)
116 COG0381 WecB UDP-N-acetylgluco 99.2 3.5E-08 7.6E-13 91.4 29.1 213 240-480 144-371 (383)
117 PF02684 LpxB: Lipid-A-disacch 99.2 4.7E-09 1E-13 99.4 23.0 309 68-457 10-351 (373)
118 PF02350 Epimerase_2: UDP-N-ac 99.2 5E-09 1.1E-13 99.7 21.7 272 149-478 57-346 (346)
119 PRK01021 lpxB lipid-A-disaccha 99.1 1.5E-07 3.2E-12 93.2 30.3 322 53-462 227-587 (608)
120 PF13579 Glyco_trans_4_4: Glyc 99.1 6.4E-10 1.4E-14 94.1 9.7 157 66-272 1-160 (160)
121 TIGR01426 MGT glycosyltransfer 99.1 2.5E-07 5.4E-12 90.7 28.5 158 287-476 224-389 (392)
122 cd03784 GT1_Gtf_like This fami 99.0 2E-07 4.3E-12 91.8 25.5 92 354-458 285-383 (401)
123 PRK10017 colanic acid biosynth 99.0 1.1E-06 2.3E-11 85.7 28.1 350 53-455 1-401 (426)
124 PF04007 DUF354: Protein of un 98.9 8.6E-07 1.9E-11 83.0 25.5 291 53-444 1-309 (335)
125 PRK02797 4-alpha-L-fucosyltran 98.9 1.5E-06 3.2E-11 78.3 23.4 233 227-482 84-319 (322)
126 PHA03392 egt ecdysteroid UDP-g 98.9 4.9E-06 1.1E-10 83.4 29.6 139 289-461 297-447 (507)
127 COG4641 Uncharacterized protei 98.8 4.4E-07 9.6E-12 83.5 16.5 217 242-482 139-364 (373)
128 PF07429 Glyco_transf_56: 4-al 98.8 1.2E-05 2.6E-10 73.6 25.2 225 229-480 125-356 (360)
129 COG4671 Predicted glycosyl tra 98.7 4.6E-06 1E-10 75.8 21.4 331 52-444 9-364 (400)
130 TIGR00661 MJ1255 conserved hyp 98.7 6.8E-06 1.5E-10 78.1 23.9 79 356-444 228-313 (321)
131 COG1819 Glycosyl transferases, 98.6 3.7E-06 7.9E-11 81.9 19.2 160 287-484 236-402 (406)
132 PF04464 Glyphos_transf: CDP-G 98.6 1E-05 2.2E-10 78.7 21.9 214 238-477 131-367 (369)
133 PLN02448 UDP-glycosyltransfera 98.6 0.00036 7.7E-09 69.6 33.0 360 50-457 8-427 (459)
134 COG1817 Uncharacterized protei 98.6 6.5E-05 1.4E-09 67.3 24.3 286 68-448 12-316 (346)
135 PF09314 DUF1972: Domain of un 98.5 1.1E-05 2.3E-10 68.4 17.1 176 53-274 2-185 (185)
136 PLN03007 UDP-glucosyltransfera 98.4 0.0028 6.2E-08 63.6 35.5 112 356-477 344-478 (482)
137 PRK14089 ipid-A-disaccharide s 98.4 4.5E-05 9.8E-10 72.2 18.8 134 240-407 126-261 (347)
138 KOG3742|consensus 98.3 8.7E-06 1.9E-10 75.8 13.0 238 234-477 245-610 (692)
139 KOG4626|consensus 98.3 6.6E-05 1.4E-09 73.1 19.2 180 285-482 755-943 (966)
140 COG3980 spsG Spore coat polysa 98.3 1E-05 2.3E-10 71.2 12.6 144 288-458 158-305 (318)
141 COG2327 WcaK Polysaccharide py 98.2 0.0052 1.1E-07 58.1 30.0 329 53-452 1-357 (385)
142 PLN02764 glycosyltransferase f 98.2 0.0039 8.5E-08 61.4 28.9 223 239-481 197-447 (453)
143 PRK10422 lipopolysaccharide co 98.2 0.00045 9.8E-09 66.6 21.4 103 288-406 183-287 (352)
144 COG0859 RfaF ADP-heptose:LPS h 98.2 0.00022 4.8E-09 68.0 18.8 101 288-406 175-276 (334)
145 PF13477 Glyco_trans_4_2: Glyc 98.1 0.0001 2.2E-09 60.5 13.2 136 54-249 1-139 (139)
146 cd03789 GT1_LPS_heptosyltransf 98.0 0.0005 1.1E-08 64.0 18.0 100 290-407 123-224 (279)
147 PLN02208 glycosyltransferase f 98.0 0.019 4.2E-07 56.7 32.1 220 238-477 190-437 (442)
148 PLN02670 transferase, transfer 98.0 0.021 4.5E-07 56.8 29.9 108 358-479 340-465 (472)
149 TIGR02193 heptsyl_trn_I lipopo 98.0 0.0015 3.3E-08 62.0 20.2 99 288-406 179-279 (319)
150 PRK10964 ADP-heptose:LPS hepto 97.9 0.0039 8.5E-08 59.3 22.7 98 289-406 179-278 (322)
151 PLN02210 UDP-glucosyl transfer 97.9 0.028 6.1E-07 55.9 33.2 105 358-474 325-450 (456)
152 PF04101 Glyco_tran_28_C: Glyc 97.9 5.5E-07 1.2E-11 76.8 -4.1 90 357-457 55-155 (167)
153 TIGR02201 heptsyl_trn_III lipo 97.8 0.0064 1.4E-07 58.5 22.6 103 288-406 181-285 (344)
154 PRK10916 ADP-heptose:LPS hepto 97.8 0.0016 3.5E-08 62.7 17.9 100 288-405 180-285 (348)
155 PLN02562 UDP-glycosyltransfera 97.8 0.054 1.2E-06 53.8 33.2 87 356-454 327-421 (448)
156 PLN02173 UDP-glucosyl transfer 97.7 0.056 1.2E-06 53.5 32.2 82 356-447 316-409 (449)
157 TIGR02195 heptsyl_trn_II lipop 97.7 0.01 2.2E-07 56.8 21.1 99 288-405 174-275 (334)
158 PLN02554 UDP-glycosyltransfera 97.7 0.078 1.7E-06 53.3 35.1 110 357-475 342-474 (481)
159 TIGR03609 S_layer_CsaB polysac 97.6 0.047 1E-06 51.3 24.1 155 234-408 120-277 (298)
160 PLN02992 coniferyl-alcohol glu 97.6 0.11 2.3E-06 51.9 32.2 114 357-482 338-472 (481)
161 PF12000 Glyco_trans_4_3: Gkyc 97.5 0.0033 7.2E-08 52.7 13.0 106 158-278 65-170 (171)
162 PF08323 Glyco_transf_5: Starc 97.3 0.0032 7E-08 57.0 11.8 132 54-192 1-174 (245)
163 PLN02410 UDP-glucoronosyl/UDP- 97.3 0.0063 1.4E-07 60.3 14.5 110 356-478 323-449 (451)
164 PF00201 UDPGT: UDP-glucoronos 97.3 0.0008 1.7E-08 68.4 8.5 135 287-455 275-418 (500)
165 PLN02207 UDP-glycosyltransfera 97.3 0.038 8.3E-07 54.9 19.6 216 238-477 208-463 (468)
166 PLN00164 glucosyltransferase; 97.2 0.28 6.1E-06 49.2 35.1 89 358-458 340-444 (480)
167 PLN00414 glycosyltransferase f 97.2 0.011 2.5E-07 58.4 14.5 202 238-461 189-418 (446)
168 PLN02863 UDP-glucoronosyl/UDP- 97.1 0.35 7.6E-06 48.4 34.4 111 357-478 343-470 (477)
169 PLN02534 UDP-glycosyltransfera 96.9 0.54 1.2E-05 47.2 33.0 77 357-444 344-443 (491)
170 KOG1050|consensus 96.9 0.34 7.3E-06 50.6 22.8 201 266-475 241-470 (732)
171 COG0058 GlgP Glucan phosphoryl 96.9 0.034 7.3E-07 57.2 15.4 139 287-430 485-629 (750)
172 PLN02167 UDP-glycosyltransfera 96.8 0.07 1.5E-06 53.6 16.3 106 358-474 341-467 (475)
173 PF00343 Phosphorylase: Carboh 96.7 0.15 3.2E-06 52.5 18.3 143 287-436 442-602 (713)
174 PF04230 PS_pyruv_trans: Polys 96.7 0.14 3E-06 47.3 17.2 159 234-408 120-284 (286)
175 PLN03004 UDP-glycosyltransfera 96.7 0.04 8.6E-07 54.5 13.6 82 357-448 334-426 (451)
176 PLN02555 limonoid glucosyltran 96.7 0.068 1.5E-06 53.4 15.2 111 356-477 336-467 (480)
177 PLN03015 UDP-glucosyl transfer 96.7 0.14 3.1E-06 50.8 17.3 75 359-444 337-425 (470)
178 PF01075 Glyco_transf_9: Glyco 96.5 0.2 4.3E-06 45.5 16.5 105 287-406 104-208 (247)
179 PF06258 Mito_fiss_Elm1: Mitoc 96.5 0.14 2.9E-06 48.1 15.0 150 240-410 96-259 (311)
180 TIGR02093 P_ylase glycogen/sta 96.4 0.035 7.5E-07 57.7 11.5 147 286-439 524-688 (794)
181 PF15024 Glyco_transf_18: Glyc 96.4 0.051 1.1E-06 53.8 12.1 155 289-479 278-455 (559)
182 COG3660 Predicted nucleoside-d 96.3 0.77 1.7E-05 40.8 20.4 107 287-408 160-273 (329)
183 PF12038 DUF3524: Domain of un 96.2 0.026 5.5E-07 46.4 7.5 84 152-259 52-137 (168)
184 PRK14986 glycogen phosphorylas 96.2 0.11 2.4E-06 54.2 13.8 146 286-438 540-703 (815)
185 PLN02152 indole-3-acetate beta 96.2 0.17 3.6E-06 50.3 14.6 109 356-474 326-451 (455)
186 PRK14985 maltodextrin phosphor 96.0 0.075 1.6E-06 55.2 11.3 146 286-438 526-689 (798)
187 cd04300 GT1_Glycogen_Phosphory 95.9 0.075 1.6E-06 55.5 11.1 146 286-438 527-690 (797)
188 PF06925 MGDG_synth: Monogalac 95.6 0.082 1.8E-06 44.9 8.5 86 149-273 79-169 (169)
189 COG1887 TagB Putative glycosyl 95.5 1.1 2.5E-05 43.4 17.0 216 238-477 145-384 (388)
190 PF05159 Capsule_synth: Capsul 95.4 0.13 2.9E-06 47.4 10.1 89 303-408 138-226 (269)
191 KOG1192|consensus 94.8 0.34 7.3E-06 49.2 11.8 142 289-458 278-434 (496)
192 KOG0780|consensus 94.6 1.9 4.1E-05 40.8 14.7 167 296-478 161-341 (483)
193 PF08660 Alg14: Oligosaccharid 94.6 1.6 3.5E-05 36.9 13.5 28 143-170 76-103 (170)
194 COG4370 Uncharacterized protei 93.7 4.9 0.00011 36.8 14.9 214 239-474 176-408 (412)
195 PF10933 DUF2827: Protein of u 92.9 8.6 0.00019 36.3 22.0 256 159-468 73-352 (364)
196 PF10087 DUF2325: Uncharacteri 92.8 0.57 1.2E-05 35.4 7.0 75 328-411 2-86 (97)
197 TIGR00715 precor6x_red precorr 90.3 14 0.0003 33.6 18.6 85 348-443 165-255 (256)
198 PF00862 Sucrose_synth: Sucros 90.1 2.5 5.4E-05 41.7 9.6 129 53-190 273-433 (550)
199 PF03016 Exostosin: Exostosin 86.6 1.1 2.3E-05 42.1 4.9 49 368-416 228-278 (302)
200 PF11997 DUF3492: Domain of un 83.6 14 0.00031 33.9 10.5 92 159-261 172-265 (268)
201 PF01113 DapB_N: Dihydrodipico 83.3 0.99 2.1E-05 35.9 2.5 44 368-411 59-102 (124)
202 KOG3339|consensus 82.8 19 0.00042 30.3 9.7 39 51-94 37-75 (211)
203 KOG1021|consensus 82.6 21 0.00046 35.8 12.1 87 368-459 335-424 (464)
204 KOG3349|consensus 82.5 10 0.00022 30.8 7.8 97 289-408 4-108 (170)
205 PF00389 2-Hacid_dh: D-isomer 82.2 15 0.00032 29.4 9.2 103 344-458 9-116 (133)
206 PRK00676 hemA glutamyl-tRNA re 81.1 51 0.0011 31.3 14.2 136 324-481 173-320 (338)
207 PF06692 MNSV_P7B: Melon necro 80.8 1.7 3.6E-05 27.9 2.3 12 1-12 1-12 (61)
208 COG3340 PepE Peptidase E [Amin 80.5 33 0.00072 29.9 10.7 84 327-410 34-128 (224)
209 PF04392 ABC_sub_bind: ABC tra 80.4 26 0.00056 32.7 11.4 154 238-407 56-218 (294)
210 COG0373 HemA Glutamyl-tRNA red 79.2 67 0.0014 31.5 17.1 115 325-461 202-319 (414)
211 TIGR02069 cyanophycinase cyano 76.7 33 0.00071 31.1 10.4 108 295-410 4-126 (250)
212 PF11071 DUF2872: Protein of u 75.9 18 0.00039 28.5 7.0 72 369-443 65-140 (141)
213 PF08288 PIGA: PIGA (GPI ancho 73.5 15 0.00032 26.9 5.7 69 116-190 13-84 (90)
214 PRK13940 glutamyl-tRNA reducta 73.4 99 0.0021 30.5 15.7 113 326-461 206-318 (414)
215 TIGR03682 arCOG04112 arCOG0411 73.2 8.7 0.00019 36.1 5.9 77 325-406 213-289 (308)
216 KOG2884|consensus 73.1 30 0.00065 30.0 8.3 51 393-444 178-228 (259)
217 PF11440 AGT: DNA alpha-glucos 72.3 79 0.0017 28.9 12.2 192 238-444 117-352 (355)
218 cd05312 NAD_bind_1_malic_enz N 71.7 37 0.00081 31.2 9.3 38 368-405 95-137 (279)
219 PRK10017 colanic acid biosynth 70.6 70 0.0015 31.7 11.8 114 292-412 3-161 (426)
220 PRK13398 3-deoxy-7-phosphohept 70.0 89 0.0019 28.6 11.5 106 293-409 29-143 (266)
221 PF12996 DUF3880: DUF based on 69.2 18 0.00038 26.0 5.5 61 238-300 15-78 (79)
222 cd01080 NAD_bind_m-THF_DH_Cycl 68.7 38 0.00082 28.6 8.2 55 324-387 43-98 (168)
223 smart00672 CAP10 Putative lipo 68.4 47 0.001 30.3 9.3 87 389-480 157-249 (256)
224 COG2984 ABC-type uncharacteriz 67.6 1.1E+02 0.0024 28.7 14.8 154 238-408 85-247 (322)
225 TIGR02990 ectoine_eutA ectoine 67.1 17 0.00037 32.7 6.2 49 362-411 162-217 (239)
226 PTZ00408 NAD-dependent deacety 66.5 72 0.0016 28.8 10.1 55 356-410 150-209 (242)
227 COG0036 Rpe Pentose-5-phosphat 66.3 20 0.00043 31.4 6.1 78 302-394 71-150 (220)
228 COG1519 KdtA 3-deoxy-D-manno-o 66.3 90 0.0019 30.5 11.0 105 287-408 48-154 (419)
229 TIGR00272 DPH2 diphthamide bio 65.7 17 0.00037 36.6 6.4 77 325-405 282-358 (496)
230 PRK10840 transcriptional regul 65.6 88 0.0019 27.3 10.6 108 325-444 3-125 (216)
231 cd03146 GAT1_Peptidase_E Type 65.6 70 0.0015 28.1 9.8 83 324-409 30-123 (212)
232 TIGR03609 S_layer_CsaB polysac 65.2 76 0.0016 29.6 10.6 87 300-408 10-107 (298)
233 cd00762 NAD_bind_malic_enz NAD 65.0 43 0.00094 30.3 8.2 38 368-405 96-138 (254)
234 COG0796 MurI Glutamate racemas 63.8 36 0.00079 31.0 7.5 93 51-188 4-98 (269)
235 PRK00994 F420-dependent methyl 63.6 69 0.0015 28.4 8.7 41 53-97 3-43 (277)
236 PRK04531 acetylglutamate kinas 63.6 34 0.00074 33.5 7.9 54 289-358 37-91 (398)
237 PF02374 ArsA_ATPase: Anion-tr 63.1 29 0.00062 32.6 7.1 46 53-103 1-47 (305)
238 TIGR03646 YtoQ_fam YtoQ family 62.5 66 0.0014 25.5 7.6 71 369-443 68-143 (144)
239 PRK05447 1-deoxy-D-xylulose 5- 62.0 32 0.00069 33.3 7.2 95 288-408 26-123 (385)
240 PF05686 Glyco_transf_90: Glyc 61.9 16 0.00036 35.7 5.5 84 392-480 229-318 (395)
241 COG1922 WecG Teichoic acid bio 61.6 1.1E+02 0.0024 27.7 10.0 116 236-370 59-176 (253)
242 PF03435 Saccharop_dh: Sacchar 61.5 31 0.00067 33.7 7.5 74 324-406 21-97 (386)
243 cd03129 GAT1_Peptidase_E_like 60.2 1.2E+02 0.0026 26.6 10.6 84 325-409 29-123 (210)
244 PRK05282 (alpha)-aspartyl dipe 60.2 1.2E+02 0.0027 27.1 10.2 109 291-410 4-123 (233)
245 PRK14994 SAM-dependent 16S rib 59.9 78 0.0017 29.4 9.2 122 237-378 33-164 (287)
246 TIGR00322 diphth2_R diphthamid 59.8 22 0.00048 33.7 5.8 77 325-405 233-309 (332)
247 COG4394 Uncharacterized protei 59.6 1.5E+02 0.0031 27.4 13.7 46 358-408 239-284 (370)
248 cd02071 MM_CoA_mut_B12_BD meth 59.2 81 0.0018 24.8 8.2 92 266-375 28-121 (122)
249 cd05565 PTS_IIB_lactose PTS_II 58.7 27 0.00058 26.4 5.0 76 328-408 4-80 (99)
250 PF01975 SurE: Survival protei 58.5 62 0.0013 28.1 7.9 37 53-96 1-38 (196)
251 PF03568 Peptidase_C50: Peptid 58.2 44 0.00096 32.6 7.7 94 299-408 267-375 (383)
252 PRK07714 hypothetical protein; 57.3 79 0.0017 23.9 7.4 76 303-395 22-97 (100)
253 PRK05647 purN phosphoribosylgl 56.9 79 0.0017 27.5 8.3 33 53-91 2-34 (200)
254 TIGR00460 fmt methionyl-tRNA f 56.9 1.1E+02 0.0023 29.0 9.9 27 53-89 1-27 (313)
255 PRK12862 malic enzyme; Reviewe 56.6 66 0.0014 34.5 9.1 36 369-405 254-289 (763)
256 PRK05583 ribosomal protein L7A 56.4 84 0.0018 24.0 7.4 66 325-397 33-98 (104)
257 COG0496 SurE Predicted acid ph 56.4 1E+02 0.0022 27.8 9.0 89 53-166 1-90 (252)
258 PF03949 Malic_M: Malic enzyme 56.2 86 0.0019 28.4 8.5 92 307-405 12-138 (255)
259 TIGR00639 PurN phosphoribosylg 56.0 1.3E+02 0.0028 25.9 9.4 35 53-93 1-35 (190)
260 PRK07742 phosphate butyryltran 56.0 1.8E+02 0.0038 27.3 11.0 76 289-384 15-98 (299)
261 TIGR01088 aroQ 3-dehydroquinat 55.8 53 0.0011 26.6 6.3 94 344-443 31-138 (141)
262 TIGR00696 wecB_tagA_cpsF bacte 55.7 50 0.0011 28.1 6.8 25 67-91 56-80 (177)
263 PF13407 Peripla_BP_4: Peripla 55.7 99 0.0021 27.7 9.4 33 377-409 56-89 (257)
264 PF03808 Glyco_tran_WecB: Glyc 55.7 46 0.001 28.1 6.6 28 67-94 56-83 (172)
265 PF01008 IF-2B: Initiation fac 55.2 1.2E+02 0.0027 27.9 10.0 99 288-406 107-216 (282)
266 cd01967 Nitrogenase_MoFe_alpha 55.1 2.2E+02 0.0047 28.0 15.9 100 301-406 135-237 (406)
267 PF01408 GFO_IDH_MocA: Oxidore 54.6 98 0.0021 23.9 10.1 23 72-94 12-34 (120)
268 PRK10834 vancomycin high tempe 54.5 1.3E+02 0.0029 27.0 9.3 95 306-408 69-169 (239)
269 PRK00005 fmt methionyl-tRNA fo 54.4 1.1E+02 0.0023 28.8 9.5 25 53-85 1-25 (309)
270 PF00551 Formyl_trans_N: Formy 54.4 93 0.002 26.5 8.4 38 53-96 1-38 (181)
271 PF10093 DUF2331: Uncharacteri 54.3 73 0.0016 30.7 8.2 46 358-408 245-290 (374)
272 PRK10494 hypothetical protein; 54.2 87 0.0019 28.6 8.5 98 305-409 107-210 (259)
273 PRK13015 3-dehydroquinate dehy 53.9 50 0.0011 26.9 6.0 95 344-444 33-141 (146)
274 PRK06988 putative formyltransf 53.4 1.2E+02 0.0025 28.7 9.5 30 52-89 2-31 (312)
275 PRK05395 3-dehydroquinate dehy 53.0 34 0.00075 27.8 4.9 95 344-444 33-141 (146)
276 COG1703 ArgK Putative periplas 52.6 1.3E+02 0.0029 28.0 9.1 106 49-169 48-154 (323)
277 PRK12861 malic enzyme; Reviewe 51.8 64 0.0014 34.5 8.0 37 368-405 249-285 (764)
278 PRK13125 trpA tryptophan synth 51.1 1.2E+02 0.0025 27.5 8.8 81 302-393 88-168 (244)
279 TIGR00853 pts-lac PTS system, 51.0 21 0.00045 26.8 3.3 75 328-408 7-83 (95)
280 PRK14138 NAD-dependent deacety 51.0 1.4E+02 0.0029 27.1 9.2 79 356-442 154-240 (244)
281 cd01020 TroA_b Metal binding p 50.8 1.4E+02 0.003 27.4 9.4 104 368-479 44-150 (264)
282 COG0426 FpaA Uncharacterized f 50.0 2.5E+02 0.0054 27.3 10.9 86 302-392 228-314 (388)
283 cd05564 PTS_IIB_chitobiose_lic 49.9 38 0.00082 25.4 4.6 75 328-408 3-79 (96)
284 KOG3966|consensus 49.5 28 0.0006 31.3 4.2 16 2-17 92-107 (360)
285 PRK10360 DNA-binding transcrip 49.5 1.3E+02 0.0027 25.5 8.7 106 327-444 3-117 (196)
286 COG2099 CobK Precorrin-6x redu 49.3 2E+02 0.0044 26.0 17.0 97 289-409 129-231 (257)
287 PRK00865 glutamate racemase; P 49.3 67 0.0015 29.3 7.1 35 53-95 6-40 (261)
288 TIGR01283 nifE nitrogenase mol 49.1 2.9E+02 0.0063 27.7 16.1 162 239-406 96-274 (456)
289 KOG2648|consensus 48.5 46 0.001 32.5 5.9 78 325-403 267-354 (453)
290 COG3613 Nucleoside 2-deoxyribo 48.3 77 0.0017 26.6 6.4 84 325-408 4-106 (172)
291 PRK04175 rpl7ae 50S ribosomal 47.4 1.4E+02 0.003 23.6 8.0 75 303-393 34-109 (122)
292 TIGR00730 conserved hypothetic 47.0 1.8E+02 0.0039 24.8 11.1 45 368-414 88-140 (178)
293 TIGR01361 DAHP_synth_Bsub phos 46.5 2E+02 0.0043 26.3 9.5 107 295-410 29-142 (260)
294 PF10649 DUF2478: Protein of u 46.2 41 0.00088 28.0 4.5 43 369-411 85-134 (159)
295 cd06533 Glyco_transf_WecG_TagA 46.2 83 0.0018 26.5 6.7 33 52-91 46-78 (171)
296 PF01220 DHquinase_II: Dehydro 45.7 76 0.0016 25.7 5.8 62 344-407 32-99 (140)
297 cd03145 GAT1_cyanophycinase Ty 45.4 2.2E+02 0.0047 25.2 10.9 83 325-409 29-126 (217)
298 PF00185 OTCace: Aspartate/orn 45.2 1.2E+02 0.0026 25.2 7.4 80 289-386 2-83 (158)
299 PRK07232 bifunctional malic en 45.1 1.1E+02 0.0025 32.7 8.6 37 368-405 245-281 (752)
300 cd01408 SIRT1 SIRT1: Eukaryoti 44.9 1.4E+02 0.003 26.8 8.2 55 356-410 151-211 (235)
301 PRK07283 hypothetical protein; 44.4 1.1E+02 0.0023 23.1 6.3 63 325-395 34-96 (98)
302 PF01866 Diphthamide_syn: Puta 44.4 24 0.00052 33.2 3.4 78 325-406 210-287 (307)
303 PRK00207 sulfur transfer compl 44.2 39 0.00084 27.0 4.1 40 53-92 1-41 (128)
304 COG3473 Maleate cis-trans isom 44.2 1.2E+02 0.0025 26.5 6.9 35 376-411 179-215 (238)
305 PRK13225 phosphoglycolate phos 43.7 1.8E+02 0.0039 26.8 9.0 50 391-444 223-272 (273)
306 PF01531 Glyco_transf_11: Glyc 43.7 1.2E+02 0.0027 28.3 8.1 65 303-383 189-254 (298)
307 COG1692 Calcineurin-like phosp 43.6 1.2E+02 0.0026 27.2 7.2 108 291-408 2-115 (266)
308 PRK13602 putative ribosomal pr 43.5 1.2E+02 0.0027 21.9 7.0 57 303-376 15-71 (82)
309 PRK00048 dihydrodipicolinate r 43.4 44 0.00096 30.4 4.9 44 368-411 52-95 (257)
310 PRK13601 putative L7Ae-like ri 43.3 1.3E+02 0.0027 21.9 6.9 46 324-376 23-68 (82)
311 cd00466 DHQase_II Dehydroquina 43.3 80 0.0017 25.5 5.6 95 343-443 30-138 (140)
312 PRK02261 methylaspartate mutas 43.2 1.4E+02 0.0031 24.1 7.3 99 266-376 32-132 (137)
313 PRK08005 epimerase; Validated 43.1 1.8E+02 0.0038 25.6 8.3 52 343-394 95-147 (210)
314 PF00205 TPP_enzyme_M: Thiamin 42.9 44 0.00096 26.8 4.4 56 327-384 14-86 (137)
315 TIGR01470 cysG_Nterm siroheme 42.8 2.3E+02 0.005 24.7 12.5 127 308-461 22-162 (205)
316 PF01408 GFO_IDH_MocA: Oxidore 42.7 67 0.0015 24.8 5.4 56 344-408 37-94 (120)
317 COG5017 Uncharacterized conser 42.5 1.8E+02 0.0039 23.5 9.7 55 359-417 48-102 (161)
318 cd01410 SIRT7 SIRT7: Eukaryoti 42.5 1E+02 0.0022 27.0 6.8 54 356-409 131-191 (206)
319 PRK08745 ribulose-phosphate 3- 42.0 68 0.0015 28.5 5.7 51 343-393 99-150 (223)
320 PF03033 Glyco_transf_28: Glyc 41.5 42 0.00091 26.8 4.1 26 67-94 10-35 (139)
321 PRK13600 putative ribosomal pr 41.3 1.4E+02 0.003 21.8 6.6 57 302-375 16-72 (84)
322 PRK08883 ribulose-phosphate 3- 41.0 1.9E+02 0.0041 25.6 8.3 48 343-390 95-142 (220)
323 PF02233 PNTB: NAD(P) transhyd 40.7 1E+02 0.0023 30.6 7.1 131 289-440 308-460 (463)
324 TIGR01425 SRP54_euk signal rec 40.5 3.8E+02 0.0083 26.6 14.6 85 388-477 254-340 (429)
325 PF02826 2-Hacid_dh_C: D-isome 40.5 1.9E+02 0.004 24.5 8.0 42 368-409 83-129 (178)
326 PRK05749 3-deoxy-D-manno-octul 40.4 2.8E+02 0.0061 27.3 10.5 104 288-408 50-155 (425)
327 TIGR00511 ribulose_e2b2 ribose 40.3 3.2E+02 0.0069 25.6 12.4 96 291-406 118-223 (301)
328 PF03808 Glyco_tran_WecB: Glyc 39.8 2.3E+02 0.005 23.9 9.5 114 238-370 2-116 (172)
329 COG0003 ArsA Predicted ATPase 39.2 1.3E+02 0.0028 28.5 7.3 45 53-103 2-48 (322)
330 PRK14077 pnk inorganic polypho 39.1 1.5E+02 0.0032 27.6 7.6 52 375-444 63-119 (287)
331 TIGR00696 wecB_tagA_cpsF bacte 38.9 2.3E+02 0.005 24.1 8.2 112 239-370 3-115 (177)
332 KOG1467|consensus 38.8 1.9E+02 0.0041 28.8 8.3 74 324-406 384-467 (556)
333 PRK13529 malate dehydrogenase; 38.5 2E+02 0.0044 29.5 8.8 38 368-405 372-414 (563)
334 PF04413 Glycos_transf_N: 3-De 38.5 73 0.0016 27.4 5.2 103 289-408 22-126 (186)
335 PF00731 AIRC: AIR carboxylase 38.4 1.5E+02 0.0031 24.5 6.6 77 328-408 4-86 (150)
336 PRK08535 translation initiatio 38.1 3.5E+02 0.0076 25.5 12.0 96 291-406 123-228 (310)
337 PRK02649 ppnK inorganic polyph 37.9 1.2E+02 0.0025 28.6 6.7 52 375-444 67-123 (305)
338 CHL00200 trpA tryptophan synth 37.7 3.2E+02 0.007 25.0 10.5 92 301-406 105-208 (263)
339 PF00391 PEP-utilizers: PEP-ut 37.6 96 0.0021 22.2 5.0 50 358-408 12-61 (80)
340 TIGR01162 purE phosphoribosyla 37.5 2.4E+02 0.0052 23.4 8.2 76 329-408 3-84 (156)
341 PRK06683 hypothetical protein; 37.5 1.6E+02 0.0034 21.3 7.0 45 324-375 26-70 (82)
342 PRK08125 bifunctional UDP-gluc 37.4 2.4E+02 0.0052 29.9 9.9 27 53-89 1-27 (660)
343 cd01409 SIRT4 SIRT4: Eukaryoti 37.3 92 0.002 28.5 5.9 55 356-410 180-241 (260)
344 PF01012 ETF: Electron transfe 37.2 1.6E+02 0.0034 24.5 7.0 92 305-406 18-120 (164)
345 TIGR00524 eIF-2B_rel eIF-2B al 37.0 3.2E+02 0.007 25.6 9.6 88 306-406 138-237 (303)
346 COG0281 SfcA Malic enzyme [Ene 36.9 1.2E+02 0.0026 29.6 6.7 87 307-405 186-297 (432)
347 PRK01231 ppnK inorganic polyph 36.6 1.1E+02 0.0024 28.5 6.4 39 392-444 74-117 (295)
348 TIGR03472 HpnI hopanoid biosyn 36.5 4E+02 0.0086 25.8 10.6 49 53-105 41-90 (373)
349 PF08902 DUF1848: Domain of un 36.3 2.8E+02 0.006 25.4 8.6 106 240-361 6-116 (266)
350 PRK04539 ppnK inorganic polyph 36.3 2.1E+02 0.0046 26.7 8.2 52 375-444 67-123 (296)
351 PF00072 Response_reg: Respons 35.7 1.8E+02 0.004 21.6 7.5 93 341-440 9-112 (112)
352 PRK01911 ppnK inorganic polyph 35.4 2.1E+02 0.0045 26.7 8.0 52 375-444 63-119 (292)
353 COG0541 Ffh Signal recognition 35.4 4.6E+02 0.0099 26.0 14.8 159 304-476 168-339 (451)
354 PRK02155 ppnK NAD(+)/NADH kina 35.3 2.2E+02 0.0047 26.6 8.1 51 376-444 63-118 (291)
355 PF04016 DUF364: Domain of unk 35.2 85 0.0018 25.7 4.9 75 366-440 52-129 (147)
356 PRK08091 ribulose-phosphate 3- 35.2 2.7E+02 0.0059 24.8 8.3 51 343-393 105-158 (228)
357 COG1736 DPH2 Diphthamide synth 34.9 1.2E+02 0.0026 29.0 6.3 75 328-406 241-315 (347)
358 cd01574 PBP1_LacI Ligand-bindi 34.9 3.3E+02 0.0072 24.3 10.9 16 393-408 72-87 (264)
359 PF13905 Thioredoxin_8: Thiore 34.8 1.8E+02 0.0039 21.1 6.9 59 289-356 2-60 (95)
360 TIGR01501 MthylAspMutase methy 34.7 2.4E+02 0.0053 22.7 7.9 99 266-376 30-130 (134)
361 COG1922 WecG Teichoic acid bio 34.4 1.5E+02 0.0033 26.8 6.6 20 151-170 153-172 (253)
362 COG2204 AtoC Response regulato 33.9 3.7E+02 0.0081 27.0 9.7 112 327-449 6-125 (464)
363 PHA00451 protein kinase 33.8 1.6E+02 0.0034 26.9 6.4 38 399-444 205-242 (362)
364 COG1663 LpxK Tetraacyldisaccha 33.8 2.7E+02 0.0059 26.4 8.3 35 61-97 54-89 (336)
365 PRK09722 allulose-6-phosphate 33.7 1.3E+02 0.0027 26.9 6.0 51 344-394 98-149 (229)
366 TIGR00695 uxuA mannonate dehyd 33.4 4.5E+02 0.0098 25.7 10.0 22 391-412 87-108 (394)
367 COG1830 FbaB DhnA-type fructos 33.4 3.8E+02 0.0082 24.5 10.8 59 291-354 116-179 (265)
368 PRK08335 translation initiatio 33.3 3.9E+02 0.0085 24.7 12.1 96 291-406 112-217 (275)
369 TIGR00732 dprA DNA protecting 33.1 2.6E+02 0.0057 24.7 8.0 62 368-437 149-218 (220)
370 TIGR00640 acid_CoA_mut_C methy 32.9 2.6E+02 0.0056 22.4 7.9 96 265-376 30-125 (132)
371 PF01297 TroA: Periplasmic sol 32.8 1.9E+02 0.0041 26.2 7.3 104 369-478 40-146 (256)
372 PRK08673 3-deoxy-7-phosphohept 32.2 4.6E+02 0.0099 25.1 10.5 102 298-410 100-210 (335)
373 cd07944 DRE_TIM_HOA_like 4-hyd 32.1 4E+02 0.0087 24.4 15.5 123 300-442 104-238 (266)
374 PLN02929 NADH kinase 32.1 97 0.0021 28.9 5.2 93 343-444 36-136 (301)
375 COG3580 Uncharacterized protei 31.9 4.3E+02 0.0094 24.7 11.8 73 325-407 47-120 (351)
376 PLN02285 methionyl-tRNA formyl 31.8 3E+02 0.0065 26.3 8.6 100 51-189 5-122 (334)
377 PF03575 Peptidase_S51: Peptid 31.7 48 0.001 27.3 3.0 66 342-409 1-78 (154)
378 TIGR01761 thiaz-red thiazoliny 31.7 2.4E+02 0.0052 27.1 7.9 91 289-408 3-98 (343)
379 PRK06932 glycerate dehydrogena 31.6 3.3E+02 0.0072 25.7 8.9 44 368-411 189-237 (314)
380 cd04724 Tryptophan_synthase_al 31.5 3.1E+02 0.0066 24.7 8.3 68 301-382 90-159 (242)
381 COG1273 Ku-homolog [Replicatio 31.4 63 0.0014 29.1 3.6 133 344-484 79-225 (278)
382 COG1184 GCD2 Translation initi 31.2 4.4E+02 0.0096 24.6 10.3 87 306-406 131-227 (301)
383 KOG3111|consensus 31.0 1.5E+02 0.0032 25.5 5.5 55 344-398 102-157 (224)
384 PRK06718 precorrin-2 dehydroge 30.7 3.6E+02 0.0078 23.4 13.8 72 325-410 33-104 (202)
385 PF00308 Bac_DnaA: Bacterial d 30.7 2.3E+02 0.0049 25.0 7.2 157 290-481 36-213 (219)
386 PRK03378 ppnK inorganic polyph 30.6 2.4E+02 0.0052 26.3 7.6 52 375-444 62-118 (292)
387 PF02951 GSH-S_N: Prokaryotic 30.5 89 0.0019 24.6 4.0 40 53-94 1-40 (119)
388 PLN03129 NADP-dependent malic 30.5 3.6E+02 0.0078 27.9 9.1 38 368-405 391-433 (581)
389 PRK08410 2-hydroxyacid dehydro 30.3 3.7E+02 0.008 25.3 9.0 44 368-411 188-236 (311)
390 COG0371 GldA Glycerol dehydrog 30.0 1.9E+02 0.004 27.9 6.8 74 327-408 33-116 (360)
391 CHL00099 ilvB acetohydroxyacid 30.0 6E+02 0.013 26.5 11.3 111 327-444 220-347 (585)
392 cd03174 DRE_TIM_metallolyase D 29.9 4.2E+02 0.0091 23.9 13.8 122 303-442 113-245 (265)
393 TIGR01454 AHBA_synth_RP 3-amin 29.6 3.2E+02 0.007 23.5 8.1 45 391-439 159-203 (205)
394 PRK05333 NAD-dependent deacety 29.5 4.6E+02 0.01 24.3 9.6 81 356-444 190-278 (285)
395 PRK11204 N-glycosyltransferase 29.5 5.5E+02 0.012 25.2 13.9 47 53-103 54-101 (420)
396 TIGR00725 conserved hypothetic 29.0 3.4E+02 0.0073 22.6 11.3 47 368-416 83-131 (159)
397 PRK06487 glycerate dehydrogena 28.8 3.5E+02 0.0076 25.6 8.5 44 368-411 189-237 (317)
398 COG1282 PntB NAD/NADP transhyd 28.7 1.5E+02 0.0033 28.3 5.7 115 306-441 327-461 (463)
399 PLN02928 oxidoreductase family 28.7 3.6E+02 0.0078 25.9 8.7 45 366-410 216-265 (347)
400 COG1091 RfbD dTDP-4-dehydrorha 28.6 1.8E+02 0.0038 26.9 6.2 18 151-168 42-59 (281)
401 COG1154 Dxs Deoxyxylulose-5-ph 28.6 1.5E+02 0.0033 30.5 6.1 94 344-444 517-623 (627)
402 TIGR00262 trpA tryptophan synt 28.6 3.7E+02 0.008 24.5 8.3 64 301-378 101-164 (256)
403 PRK03501 ppnK inorganic polyph 28.4 3E+02 0.0064 25.3 7.6 86 328-444 5-96 (264)
404 PRK08978 acetolactate synthase 28.4 6.7E+02 0.015 25.8 11.3 111 327-444 199-326 (548)
405 PRK03372 ppnK inorganic polyph 28.4 3.3E+02 0.0071 25.6 8.1 52 375-444 71-127 (306)
406 PRK12815 carB carbamoyl phosph 28.2 4.9E+02 0.011 29.6 10.8 44 51-96 554-600 (1068)
407 TIGR00182 plsX fatty acid/phos 28.1 4.6E+02 0.01 24.9 9.1 47 301-363 3-49 (322)
408 COG0803 LraI ABC-type metal io 28.1 3.4E+02 0.0073 25.4 8.3 108 369-480 74-189 (303)
409 KOG0832|consensus 27.9 4.4E+02 0.0094 23.5 10.8 42 353-405 160-201 (251)
410 PF13433 Peripla_BP_5: Peripla 27.8 2.8E+02 0.0062 26.7 7.6 78 307-389 24-104 (363)
411 TIGR03837 efp_adjacent_2 conse 27.8 4E+02 0.0086 25.7 8.4 46 358-408 243-288 (371)
412 KOG4131|consensus 27.8 78 0.0017 28.0 3.5 93 290-411 144-238 (272)
413 PF02630 SCO1-SenC: SCO1/SenC; 27.6 3.7E+02 0.0081 22.6 9.3 87 287-380 51-137 (174)
414 PRK06849 hypothetical protein; 27.6 3.3E+02 0.0072 26.5 8.5 36 51-95 3-38 (389)
415 COG3414 SgaB Phosphotransferas 27.6 1.2E+02 0.0026 22.6 4.1 53 328-384 5-57 (93)
416 PRK14057 epimerase; Provisiona 27.5 4.7E+02 0.01 23.8 8.6 51 344-394 113-173 (254)
417 PF01488 Shikimate_DH: Shikima 27.3 3.2E+02 0.007 21.8 8.6 70 327-409 38-109 (135)
418 TIGR00036 dapB dihydrodipicoli 27.2 95 0.0021 28.5 4.3 36 375-410 67-102 (266)
419 PRK10669 putative cation:proto 27.2 6.8E+02 0.015 25.9 11.0 26 67-94 424-449 (558)
420 KOG3332|consensus 27.1 4.2E+02 0.0091 23.5 7.7 38 53-93 38-75 (247)
421 PRK00945 acetyl-CoA decarbonyl 27.1 3.9E+02 0.0084 22.6 8.8 20 425-444 148-169 (171)
422 PF04321 RmlD_sub_bind: RmlD s 27.0 1.4E+02 0.0031 27.6 5.6 33 53-94 1-33 (286)
423 cd05212 NAD_bind_m-THF_DH_Cycl 26.9 3.4E+02 0.0075 22.0 7.9 71 324-404 27-97 (140)
424 TIGR02015 BchY chlorophyllide 26.8 5.5E+02 0.012 25.4 9.8 96 327-448 167-262 (422)
425 PRK05331 putative phosphate ac 26.8 2.5E+02 0.0054 26.8 7.1 57 294-364 5-62 (334)
426 PRK08979 acetolactate synthase 26.5 5.9E+02 0.013 26.4 10.5 110 327-444 209-336 (572)
427 COG2120 Uncharacterized protei 26.4 3.4E+02 0.0074 24.3 7.6 19 149-167 99-117 (237)
428 PF00834 Ribul_P_3_epim: Ribul 26.2 1.5E+02 0.0033 25.8 5.2 51 343-393 94-145 (201)
429 PRK04885 ppnK inorganic polyph 26.1 5.1E+02 0.011 23.7 9.2 52 375-444 34-92 (265)
430 COG1056 NadR Nicotinamide mono 26.1 4.1E+02 0.0088 22.5 8.2 65 289-362 3-75 (172)
431 PRK06988 putative formyltransf 25.9 3.8E+02 0.0082 25.3 8.1 14 391-404 117-130 (312)
432 COG1105 FruK Fructose-1-phosph 25.8 5.7E+02 0.012 24.1 9.7 119 289-419 101-232 (310)
433 PF05014 Nuc_deoxyrib_tr: Nucl 25.7 97 0.0021 23.9 3.6 38 371-408 56-97 (113)
434 COG0300 DltE Short-chain dehyd 25.7 5.3E+02 0.011 23.7 9.2 21 73-95 20-40 (265)
435 PF00852 Glyco_transf_10: Glyc 25.6 1.2E+02 0.0025 29.2 4.8 80 368-454 219-306 (349)
436 PRK14057 epimerase; Provisiona 25.5 2.1E+02 0.0045 26.0 6.0 44 342-385 179-223 (254)
437 PRK14076 pnk inorganic polypho 25.4 3.7E+02 0.008 28.0 8.6 113 305-444 276-403 (569)
438 PF03358 FMN_red: NADPH-depend 25.3 63 0.0014 26.4 2.6 40 53-94 1-40 (152)
439 TIGR00067 glut_race glutamate 25.3 2.9E+02 0.0063 25.1 7.0 23 73-95 11-33 (251)
440 PF09949 DUF2183: Uncharacteri 25.2 1.6E+02 0.0035 22.3 4.5 37 308-353 52-88 (100)
441 PTZ00254 40S ribosomal protein 25.2 5.2E+02 0.011 23.4 9.0 92 302-405 53-146 (249)
442 KOG0368|consensus 25.1 5.3E+02 0.011 30.2 9.6 151 252-418 41-208 (2196)
443 PRK00652 lpxK tetraacyldisacch 25.0 3.6E+02 0.0078 25.6 7.8 27 67-95 63-89 (325)
444 PF02882 THF_DHG_CYH_C: Tetrah 24.9 3.8E+02 0.0083 22.3 7.1 71 324-404 35-105 (160)
445 COG0159 TrpA Tryptophan syntha 24.9 4.3E+02 0.0093 24.2 7.8 76 291-381 98-174 (265)
446 cd07940 DRE_TIM_IPMS 2-isoprop 24.8 5.4E+02 0.012 23.5 11.7 120 303-442 112-244 (268)
447 PRK07979 acetolactate synthase 24.2 8E+02 0.017 25.4 11.0 111 327-444 209-336 (574)
448 COG0052 RpsB Ribosomal protein 24.1 5.4E+02 0.012 23.3 8.0 27 377-405 157-184 (252)
449 PRK06027 purU formyltetrahydro 24.1 5.1E+02 0.011 24.0 8.5 108 50-189 87-194 (286)
450 PTZ00317 NADP-dependent malic 23.9 4.9E+02 0.011 26.8 8.7 38 368-405 371-413 (559)
451 PF13314 DUF4083: Domain of un 23.8 2.3E+02 0.005 18.9 4.8 24 13-36 3-26 (58)
452 PRK05562 precorrin-2 dehydroge 23.6 5.3E+02 0.011 23.0 13.1 115 325-461 48-177 (223)
453 cd01539 PBP1_GGBP Periplasmic 23.4 5.9E+02 0.013 23.5 9.6 34 376-409 57-91 (303)
454 PF05141 DIT1_PvcA: Pyoverdine 23.3 1.2E+02 0.0027 27.9 4.2 66 299-365 33-107 (278)
455 COG0223 Fmt Methionyl-tRNA for 23.3 5.3E+02 0.011 24.3 8.3 34 52-95 1-34 (307)
456 COG0111 SerA Phosphoglycerate 23.2 5.5E+02 0.012 24.4 8.7 37 368-404 189-230 (324)
457 COG5148 RPN10 26S proteasome r 23.1 4.8E+02 0.01 22.3 7.3 39 289-333 108-146 (243)
458 TIGR00460 fmt methionyl-tRNA f 23.1 5.7E+02 0.012 24.1 8.8 14 391-404 118-131 (313)
459 KOG0259|consensus 23.0 7.1E+02 0.015 24.3 14.3 151 299-478 180-339 (447)
460 PRK15438 erythronate-4-phospha 22.8 6.8E+02 0.015 24.4 9.3 44 368-411 159-211 (378)
461 TIGR02090 LEU1_arch isopropylm 22.8 7E+02 0.015 24.1 12.9 102 303-412 110-221 (363)
462 PF06506 PrpR_N: Propionate ca 22.7 2.1E+02 0.0045 24.2 5.3 79 305-404 64-147 (176)
463 PRK09590 celB cellobiose phosp 22.7 1.9E+02 0.004 22.1 4.4 75 328-408 5-83 (104)
464 COG1087 GalE UDP-glucose 4-epi 22.6 2.5E+02 0.0055 26.3 5.9 33 66-100 7-39 (329)
465 TIGR00288 conserved hypothetic 22.4 3.6E+02 0.0078 22.5 6.3 67 302-383 89-155 (160)
466 cd05311 NAD_bind_2_malic_enz N 22.3 5.6E+02 0.012 22.8 8.5 36 369-405 90-125 (226)
467 PRK13845 putative glycerol-3-p 22.3 4.9E+02 0.011 25.8 8.0 52 288-354 92-143 (437)
468 cd01137 PsaA Metal binding pro 22.2 5.4E+02 0.012 23.8 8.4 46 431-478 125-171 (287)
469 COG0673 MviM Predicted dehydro 22.2 3.8E+02 0.0082 25.3 7.7 57 344-408 41-99 (342)
470 PRK14478 nitrogenase molybdenu 22.1 8.3E+02 0.018 24.7 15.9 162 239-406 94-268 (475)
471 PRK10100 DNA-binding transcrip 22.1 5.5E+02 0.012 22.6 8.5 107 325-444 10-126 (216)
472 PLN02331 phosphoribosylglycina 21.9 5.5E+02 0.012 22.5 8.9 61 344-405 68-137 (207)
473 PRK06112 acetolactate synthase 21.9 8.9E+02 0.019 25.1 10.8 110 327-444 216-347 (578)
474 PF05568 ASFV_J13L: African sw 21.8 2.3E+02 0.0049 22.8 4.7 7 54-60 67-73 (189)
475 PF02571 CbiJ: Precorrin-6x re 21.8 3.1E+02 0.0067 24.9 6.4 94 53-187 1-99 (249)
476 TIGR03677 rpl7ae 50S ribosomal 21.8 3.9E+02 0.0085 20.8 8.1 76 303-394 30-106 (117)
477 PF11238 DUF3039: Protein of u 21.7 71 0.0015 21.2 1.7 15 392-406 16-30 (58)
478 PRK06466 acetolactate synthase 21.6 7.7E+02 0.017 25.6 10.2 111 327-444 209-336 (574)
479 TIGR02014 BchZ chlorophyllide 21.6 6.3E+02 0.014 25.5 9.1 94 327-444 154-248 (468)
480 TIGR01369 CPSaseII_lrg carbamo 21.4 9.3E+02 0.02 27.4 11.4 41 53-95 555-598 (1050)
481 PRK03958 tRNA 2'-O-methylase; 21.4 5.1E+02 0.011 22.0 7.1 64 324-398 78-141 (176)
482 PF00834 Ribul_P_3_epim: Ribul 21.4 1.5E+02 0.0033 25.8 4.3 39 346-384 156-195 (201)
483 TIGR00118 acolac_lg acetolacta 21.2 9.2E+02 0.02 24.9 11.0 110 327-444 204-331 (558)
484 PRK08745 ribulose-phosphate 3- 21.2 2.8E+02 0.0061 24.6 5.9 27 358-384 173-200 (223)
485 PRK09444 pntB pyridine nucleot 21.1 80 0.0017 31.1 2.6 68 368-439 373-458 (462)
486 cd01016 TroA Metal binding pro 21.1 6.1E+02 0.013 23.3 8.4 109 368-478 42-155 (276)
487 PRK12595 bifunctional 3-deoxy- 21.0 7.6E+02 0.017 23.9 11.4 97 302-409 129-234 (360)
488 PRK14142 heat shock protein Gr 20.9 2.3E+02 0.005 25.1 5.1 50 431-481 48-97 (223)
489 PF03308 ArgK: ArgK protein; 20.9 6.4E+02 0.014 23.1 8.0 102 51-168 28-131 (266)
490 PRK05294 carB carbamoyl phosph 20.9 9.5E+02 0.021 27.3 11.3 42 52-95 554-598 (1066)
491 PRK10430 DNA-binding transcrip 20.8 5.9E+02 0.013 22.5 9.5 62 377-442 50-120 (239)
492 PRK13243 glyoxylate reductase; 20.6 7.1E+02 0.015 23.7 9.0 44 368-411 196-244 (333)
493 COG1105 FruK Fructose-1-phosph 20.6 7.2E+02 0.016 23.4 11.1 66 373-444 126-198 (310)
494 PF00290 Trp_syntA: Tryptophan 20.5 5.8E+02 0.013 23.3 7.9 118 302-441 102-235 (259)
495 PRK11858 aksA trans-homoaconit 20.4 8E+02 0.017 23.9 13.0 103 302-412 113-225 (378)
496 COG1570 XseA Exonuclease VII, 20.4 2E+02 0.0044 28.4 5.1 46 47-98 130-175 (440)
497 cd07347 harmonin_N_like N-term 20.2 3.4E+02 0.0074 19.5 5.3 46 431-478 4-49 (78)
498 PRK09468 ompR osmolarity respo 20.1 5.9E+02 0.013 22.2 10.0 107 325-444 5-122 (239)
No 1
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.5e-60 Score=466.39 Aligned_cols=429 Identities=44% Similarity=0.767 Sum_probs=379.5
Q ss_pred cccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeecccee
Q psy15555 51 VLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFV 130 (488)
Q Consensus 51 ~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 130 (488)
++++|+|+||+++.+||+||+++..+.+|.+.+++++|+++|++.+...+++..+..+.|++.++.+ +.++++....|+
T Consensus 32 ~~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~l~~~~~~~~i~~~~~-~~~v~l~~~~~~ 110 (463)
T PLN02949 32 RKRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSLAARARDRFGVELLSP-PKVVHLRKRKWI 110 (463)
T ss_pred CCcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHHHHHHHhhcceecCCC-ceEEEecccccc
Confidence 3579999999999999999999999999999999999999999877777777777777899888877 788888778899
Q ss_pred eccCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccC
Q psy15555 131 EASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNN 210 (488)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~ 210 (488)
.+..+++++.+++++++++..++.+.+..||++++|.++++.+|+++ ..+.|++.|+|+|..+.||...+..+...+++
T Consensus 111 ~~~~~~~~t~~~~~~~~~~l~~~~~~~~~p~v~vDt~~~~~~~pl~~-~~~~~v~~yvH~p~~~~dm~~~v~~~~~~~~~ 189 (463)
T PLN02949 111 EEETYPRFTMIGQSLGSVYLAWEALCKFTPLYFFDTSGYAFTYPLAR-LFGCKVVCYTHYPTISSDMISRVRDRSSMYNN 189 (463)
T ss_pred ccccCCceehHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccHHHHHH-hcCCcEEEEEeCCcchHHHHHHHhhcccccCc
Confidence 99999999999999999999999888888999999999999999988 66899999999999999999999999999999
Q ss_pred ccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCCCCCCCe
Q psy15555 211 SQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPV 290 (488)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~~~~~~~ 290 (488)
...+..+...+..+..|++.+.++++...+.+|.++++|+++++.+.+.++.+.++.+++||+|.+.+.........++.
T Consensus 190 ~~~~a~~~~~~~~k~~Y~~~~~~l~~~~~~~ad~ii~nS~~t~~~l~~~~~~~~~i~vvyp~vd~~~~~~~~~~~~~~~~ 269 (463)
T PLN02949 190 DASIARSFWLSTCKILYYRAFAWMYGLVGRCAHLAMVNSSWTKSHIEALWRIPERIKRVYPPCDTSGLQALPLERSEDPP 269 (463)
T ss_pred cchhhccchhHHHHHHHHHHHHHHHHHHcCCCCEEEECCHHHHHHHHHHcCCCCCeEEEcCCCCHHHcccCCccccCCCC
Confidence 88888887778888999999999999999999999999999999999988766688999999987665332222223457
Q ss_pred EEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHH
Q psy15555 291 KIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDM 370 (488)
Q Consensus 291 ~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el 370 (488)
.++++||+.++||++.+++|++++.++.+ ...++++|+|+|+++..++.++.++++++++++++.++|+|+|+++.+|+
T Consensus 270 ~il~vGR~~~~Kg~~llI~A~~~l~~~~~-~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el 348 (463)
T PLN02949 270 YIISVAQFRPEKAHALQLEAFALALEKLD-ADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDL 348 (463)
T ss_pred EEEEEEeeeccCCHHHHHHHHHHHHHhcc-ccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHH
Confidence 89999999999999999999999876421 00168999999999766666788999999999999999999999999999
Q ss_pred HHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHHccCHHHH
Q psy15555 371 KKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILHLSQDTK 450 (488)
Q Consensus 371 ~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~~~~~~~ 450 (488)
.++|+.||+++.+|..|+||++++|||++|+|||+++.+|+.+|++.+. ..+.+|++++|+++++++|.++++++++.+
T Consensus 349 ~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~-~~g~tG~l~~~~~~la~ai~~ll~~~~~~r 427 (463)
T PLN02949 349 VRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDE-DGQQTGFLATTVEEYADAILEVLRMRETER 427 (463)
T ss_pred HHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecC-CCCcccccCCCHHHHHHHHHHHHhCCHHHH
Confidence 9999999999999999999999999999999999999999876888752 122689999999999999999998567889
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhh
Q psy15555 451 TRISQNAVSSVDRFSMEEFKNGFLTFTQPLFKV 483 (488)
Q Consensus 451 ~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~~ 483 (488)
++|+++|++.+++||++.+.+++.+.++++++.
T Consensus 428 ~~m~~~ar~~~~~FS~e~~~~~~~~~i~~l~~~ 460 (463)
T PLN02949 428 LEIAAAARKRANRFSEQRFNEDFKDAIRPILNS 460 (463)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhh
Confidence 999999999998899999999999999998764
No 2
>KOG1387|consensus
Probab=100.00 E-value=1.4e-58 Score=404.25 Aligned_cols=426 Identities=45% Similarity=0.777 Sum_probs=390.6
Q ss_pred ccccccccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEee
Q psy15555 46 RKSYNVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLY 125 (488)
Q Consensus 46 ~~~~~~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 125 (488)
+...++.+.++|+||+++++||+||++|..++.+++.+|++.+++++++.+.+++++..++++.|++.+++..+.++++.
T Consensus 37 ~~~~k~~ktvgfFHPYCNAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi~Lk 116 (465)
T KOG1387|consen 37 NRAEKNVKTVGFFHPYCNAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFIYLK 116 (465)
T ss_pred hhhhhhceEEEEecccccCCCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEEEEE
Confidence 33445567899999999999999999999999999999999999999999999999999999999999997669999999
Q ss_pred ccceeeccCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhh
Q psy15555 126 RRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRV 205 (488)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~ 205 (488)
.+.++....|++++.++|+++++......+-++.|||.|++.++|+.+|+++..+++|++.|+|+|.+++||+..+..+.
T Consensus 117 ~R~lVea~~~~hfTllgQaigsmIl~~Eai~r~~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML~~l~qrq 196 (465)
T KOG1387|consen 117 LRYLVEASTWKHFTLLGQAIGSMILAFEAIIRFPPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDMLKKLFQRQ 196 (465)
T ss_pred eeeeeecccccceehHHHHHHHHHHHHHHHHhCCchheEecCCCcchhHHHHHHccCceEEEEecccccHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999998999999999999999999999998875
Q ss_pred hcccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCCC
Q psy15555 206 ITHNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSK 285 (488)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~~ 285 (488)
.+......+..||+.|..+++.+.++||.++++|.++.+.+.+.+.. .+..+++||++.+.........
T Consensus 197 ----------~s~~l~~~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~nHI~qiW~~-~~~~iVyPPC~~e~lks~~~te 265 (465)
T KOG1387|consen 197 ----------KSGILVWGKLAYWRLFALLYQSAGSKADIVMTNSSWTNNHIKQIWQS-NTCSIVYPPCSTEDLKSKFGTE 265 (465)
T ss_pred ----------hcchhhhHHHHHHHHHHHHHHhccccceEEEecchhhHHHHHHHhhc-cceeEEcCCCCHHHHHHHhccc
Confidence 23467788889999999999999999999999999999999999987 5789999999988766555444
Q ss_pred CCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhh-ccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC
Q psy15555 286 TDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEE-LWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN 364 (488)
Q Consensus 286 ~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~-~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 364 (488)
.++.+.++++|.+.|+|+.. +|+.++....+.+++ .+++++|+++|+++.++|++|.+.++++++++.++.+|.|.-.
T Consensus 266 ~~r~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N 344 (465)
T KOG1387|consen 266 GERENQLLSLAQFRPEKNHK-ILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKN 344 (465)
T ss_pred CCcceEEEEEeecCcccccH-HHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEec
Confidence 56778999999999999999 666666555554432 3468999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHHc
Q psy15555 365 LPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILH 444 (488)
Q Consensus 365 ~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~ 444 (488)
+|.+++..+|+.|.+.|.+.+.|+||+.++|+||+|+-+|+.+++|+..||+.+. .++.+|++.++.+|.++++.++..
T Consensus 345 ~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~-~G~~tGFla~t~~EYaE~iLkIv~ 423 (465)
T KOG1387|consen 345 VPYEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPW-DGETTGFLAPTDEEYAEAILKIVK 423 (465)
T ss_pred CCHHHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCCCCceeeeecc-CCccceeecCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 777899999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhh
Q psy15555 445 LSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLFKVM 484 (488)
Q Consensus 445 ~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~~~ 484 (488)
++++++..|+++||..+.+|+...+-+.|.+.+.+++.+.
T Consensus 424 ~~~~~r~~~r~~AR~s~~RFsE~~F~kd~~~~i~kll~e~ 463 (465)
T KOG1387|consen 424 LNYDERNMMRRNARKSLARFGELKFDKDWENPICKLLEEE 463 (465)
T ss_pred cCHHHHHHHHHHHHHHHHHhhHHHHHHhHhHHHHHhhccc
Confidence 8999999999999999999999999999999999988653
No 3
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=1.6e-54 Score=424.16 Aligned_cols=413 Identities=54% Similarity=0.955 Sum_probs=358.0
Q ss_pred EEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEee-ccceeec
Q psy15555 54 TVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLY-RRKFVEA 132 (488)
Q Consensus 54 rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~ 132 (488)
.|+|+||+++.+||+||+++..+.+|.+.+++++|+++|++.+.......++....|.+...++ +.++.+. ...+..+
T Consensus 2 ~~~f~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~ 80 (419)
T cd03806 2 TVGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRP-RIVFFLLKYRKLVEA 80 (419)
T ss_pred eEEEECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCC-ceEEEEecceeeecc
Confidence 5899999999999999999999999999989999999999988766677778888898888777 8776664 6677888
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCcc
Q psy15555 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQ 212 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~ 212 (488)
..+++++.+++++.......+.+...+|||++++.+|+..+++++...++|++.|+|+|....|+...+......++|..
T Consensus 81 ~~~~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~h~P~~~~d~l~~~~~~~~~~~~~~ 160 (419)
T cd03806 81 STYPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFTYPLVRLLGGCPVGAYVHYPTISTDMLQKVRSREASYNNSA 160 (419)
T ss_pred ccCCceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHhcCCeEEEEecCCcchHHHHHHHhhccccccCcc
Confidence 89999999999998888787777677999999999999999988877789999999999998899988888888888888
Q ss_pred ccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCCCCCCCeEE
Q psy15555 213 RVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKI 292 (488)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~~~~~~~~i 292 (488)
.+..+...+..+..|++.+.++++...+.+|.++++|+++++.+.+.++...++.+++||+|.+.+.+.......+++++
T Consensus 161 ~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~~~~~~~~~~vi~~gvd~~~~~~~~~~~~~~~~~i 240 (419)
T cd03806 161 TIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRSLWKRNTKPSIVYPPCDVEELLKLPLDEKTRENQI 240 (419)
T ss_pred chhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHHHhCcCCCcEEEcCCCCHHHhcccccccccCCcEE
Confidence 88888877888999999999999999999999999999999999998776558999999999877654432223456899
Q ss_pred EEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHH
Q psy15555 293 ISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKK 372 (488)
Q Consensus 293 ~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~ 372 (488)
+|+|++.++||++.+++|++++.++.++...++++|+|+|+++..++.++.++++++++++++.++|+|+|.+|.+++..
T Consensus 241 l~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~ 320 (419)
T cd03806 241 LSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLE 320 (419)
T ss_pred EEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHH
Confidence 99999999999999999999998876210012599999999877666678899999999999999999999999999999
Q ss_pred HHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceec---cCCCccccceecCCHHHHHHHHHHHHccCHHH
Q psy15555 373 EFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVI---EDPETCRNGFLACDEVEYAQTIKLILHLSQDT 449 (488)
Q Consensus 373 ~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~---~~~~~~~~g~~~~~~~~l~~~i~~ll~~~~~~ 449 (488)
+|+.||+++.+|..|+||++++|||++|+|||+++.+|+.++++. ++ .+|++++|+++++++|.++++++++.
T Consensus 321 ~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g----~~G~l~~d~~~la~ai~~ll~~~~~~ 396 (419)
T cd03806 321 ELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGG----PTGFLASTAEEYAEAIEKILSLSEEE 396 (419)
T ss_pred HHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCC----CceEEeCCHHHHHHHHHHHHhCCHHH
Confidence 999999999999999999999999999999999999887668988 66 89999999999999999999844455
Q ss_pred HHHHHHHHHHHHhhcCHHHHHH
Q psy15555 450 KTRISQNAVSSVDRFSMEEFKN 471 (488)
Q Consensus 450 ~~~~~~~a~~~~~~~s~~~~~~ 471 (488)
++.+++++++..++||++.+.+
T Consensus 397 ~~~~~~~~~~~~~~fs~~~f~~ 418 (419)
T cd03806 397 RLRIRRAARSSVKRFSDEEFER 418 (419)
T ss_pred HHHHHHHHHHHHHhhCHHHhcc
Confidence 5556555555449999998753
No 4
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=9.7e-42 Score=312.34 Aligned_cols=343 Identities=17% Similarity=0.124 Sum_probs=279.2
Q ss_pred EEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeeccC
Q psy15555 55 VAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEASL 134 (488)
Q Consensus 55 I~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 134 (488)
..|+|..+. |+.+.+.+|+++|++++|++.++++|.++++ .+... ..++ +. +.+.|+|+|..
T Consensus 51 ~vWiHaaSV---GEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg--~e~a~---~~~~----~~-v~h~YlP~D~~----- 112 (419)
T COG1519 51 LVWIHAASV---GEVLAALPLVRALRERFPDLRILVTTMTPTG--AERAA---ALFG----DS-VIHQYLPLDLP----- 112 (419)
T ss_pred eEEEEecch---hHHHHHHHHHHHHHHhCCCCCEEEEecCccH--HHHHH---HHcC----CC-eEEEecCcCch-----
Confidence 445554443 6779999999999999999999999988654 22222 2232 44 78899999887
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhcCCc--EEEecCCccchhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCcc
Q psy15555 135 YPYFTLLGQSIGSMILGVEALLSFQPD--IYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQ 212 (488)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~~pD--iii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~ 212 (488)
..+++++++++|| |+++++.||+++..++ ..++|.++
T Consensus 113 --------------~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~-~~~~p~~L-------------------------- 151 (419)
T COG1519 113 --------------IAVRRFLRKWRPKLLIIMETELWPNLINELK-RRGIPLVL-------------------------- 151 (419)
T ss_pred --------------HHHHHHHHhcCCCEEEEEeccccHHHHHHHH-HcCCCEEE--------------------------
Confidence 5688999999999 4569999999998887 88999998
Q ss_pred ccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCC-CCchhh-------hccCCC
Q psy15555 213 RVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPP-CDTEDL-------KKITHS 284 (488)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~-~d~~~~-------~~~~~~ 284 (488)
.|+++|..+...|+.+..+.+.+++..|.|++||+.++++|.+++..+ +.+..|- +|.+.. ......
T Consensus 152 ---vNaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~Rf~~LGa~~--v~v~GNlKfd~~~~~~~~~~~~~~r~~ 226 (419)
T COG1519 152 ---VNARLSDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQRFRSLGAKP--VVVTGNLKFDIEPPPQLAAELAALRRQ 226 (419)
T ss_pred ---EeeeechhhhHHHHHHHHHHHHHHHhcceeeecCHHHHHHHHhcCCcc--eEEecceeecCCCChhhHHHHHHHHHh
Confidence 788999999999999999999999999999999999999999977644 6777764 433222 112223
Q ss_pred CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCC--------
Q psy15555 285 KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLE-------- 356 (488)
Q Consensus 285 ~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~-------- 356 (488)
....+++++++|++. ++.+.++++++.+++++ |+..+++|++|| |+++++++++++.|+.
T Consensus 227 l~~~r~v~iaaSTH~--GEeei~l~~~~~l~~~~-----~~~llIlVPRHp-----ERf~~v~~l~~~~gl~~~~rS~~~ 294 (419)
T COG1519 227 LGGHRPVWVAASTHE--GEEEIILDAHQALKKQF-----PNLLLILVPRHP-----ERFKAVENLLKRKGLSVTRRSQGD 294 (419)
T ss_pred cCCCCceEEEecCCC--chHHHHHHHHHHHHhhC-----CCceEEEecCCh-----hhHHHHHHHHHHcCCeEEeecCCC
Confidence 333488999999854 44557899999999998 899999999999 9999999999999883
Q ss_pred -----CcEEEecCCChHHHHHHHHhCc-EEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC
Q psy15555 357 -----NNVEFKVNLPYEDMKKEFSEGL-IGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC 430 (488)
Q Consensus 357 -----~~v~~~g~~~~~el~~~~~~ad-~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~ 430 (488)
.+|.+.+.+ +||..+|+.|| +||++|..+.+|||++||+++|+|||++++..++.|+.+.. .+.+.++.++
T Consensus 295 ~~~~~tdV~l~Dtm--GEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~Gp~~~Nf~ei~~~l-~~~ga~~~v~ 371 (419)
T COG1519 295 PPFSDTDVLLGDTM--GELGLLYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIFGPYTFNFSDIAERL-LQAGAGLQVE 371 (419)
T ss_pred CCCCCCcEEEEecH--hHHHHHHhhccEEEECCcccCCCCCChhhHHHcCCCEEeCCccccHHHHHHHH-HhcCCeEEEC
Confidence 367777777 99999999999 89999999999999999999999999999977776776665 4456788899
Q ss_pred CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q psy15555 431 DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQP 479 (488)
Q Consensus 431 ~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~ 479 (488)
|.+.+++++..+++ |++.+.++++++...+.. .+...++.++.+++
T Consensus 372 ~~~~l~~~v~~l~~-~~~~r~~~~~~~~~~v~~--~~gal~r~l~~l~~ 417 (419)
T COG1519 372 DADLLAKAVELLLA-DEDKREAYGRAGLEFLAQ--NRGALARTLEALKP 417 (419)
T ss_pred CHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH--hhHHHHHHHHHhhh
Confidence 98888888888888 899999999999988843 24456666666654
No 5
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=1.9e-39 Score=318.08 Aligned_cols=366 Identities=15% Similarity=0.150 Sum_probs=269.0
Q ss_pred EEEEeccC-CCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 54 TVAFFHPY-CNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 54 rI~~~~~~-~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
||+++.+. .+..||.++.+..++++|.++| ++|++++...+...... ..... +.+..++.......
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G--~~V~v~~~~~~~~~~~~----------~~~~~-i~v~~~p~~~~~~~ 67 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRG--HKVVVITHAYGNRVGIR----------YLTNG-LKVYYLPFVVFYNQ 67 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcC--CeeEEEeccCCcCCCcc----------cccCc-eeEEEecceeccCC
Confidence 67887764 4467889999999999999995 55566655422111000 00122 44544443322111
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhh---hhhhhCCCeeEEEEeCCccchHHHHHHHhhhhccc
Q psy15555 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP---LFSYIGGSKVACYIHYPTITKEMLTRVARRVITHN 209 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~---~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~ 209 (488)
..... .+.....+.+.+++.+|||||.+..++.... .+....++|++...|......
T Consensus 68 ~~~~~------~~~~~~~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~h~~~~~~-------------- 127 (398)
T cd03796 68 STLPT------FFGTFPLLRNILIRERITIVHGHQAFSALAHEALLHARTMGLKTVFTDHSLFGFA-------------- 127 (398)
T ss_pred ccccc------hhhhHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEEeccccccc--------------
Confidence 11111 1112234556777889999998875544321 222356789888887432000
Q ss_pred CccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhc-cCCceEEEcCCCCchhhhccCCCCCCC
Q psy15555 210 NSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWN-CQLKTYKLYPPCDTEDLKKITHSKTDG 288 (488)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~-~~~k~~vi~~~~d~~~~~~~~~~~~~~ 288 (488)
... .....++.++..+++|.++++|+...+.+....+ .++++.++||++|.+.+.+......++
T Consensus 128 ------------~~~---~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~~~~~ 192 (398)
T cd03796 128 ------------DAS---SIHTNKLLRFSLADVDHVICVSHTSKENTVLRASLDPERVSVIPNAVDSSDFTPDPSKRDND 192 (398)
T ss_pred ------------chh---hHHhhHHHHHhhccCCEEEEecHhHhhHHHHHhCCChhhEEEEcCccCHHHcCCCcccCCCC
Confidence 000 0111224456678999999999999886643333 345899999999988876654333457
Q ss_pred CeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChH
Q psy15555 289 PVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYE 368 (488)
Q Consensus 289 ~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 368 (488)
+++++++|++.++||++.+++|++.+.++. ++++++++|.++.. ++++++++++++.++|.+.|.++.+
T Consensus 193 ~~~i~~~grl~~~Kg~~~li~a~~~l~~~~-----~~~~l~i~G~g~~~------~~l~~~~~~~~l~~~v~~~G~~~~~ 261 (398)
T cd03796 193 KITIVVISRLVYRKGIDLLVGIIPEICKKH-----PNVRFIIGGDGPKR------ILLEEMREKYNLQDRVELLGAVPHE 261 (398)
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHHHhhC-----CCEEEEEEeCCchH------HHHHHHHHHhCCCCeEEEeCCCCHH
Confidence 789999999999999999999999998777 89999999998632 7789999999999999999999999
Q ss_pred HHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHHccCHH
Q psy15555 369 DMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILHLSQD 448 (488)
Q Consensus 369 el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~~~~~ 448 (488)
++..+|+.||+++.||..|++|++++|||+||+|||+++.++.. |++.++ ..++..+|.+++++++.++++ +..
T Consensus 262 ~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~~-e~i~~~----~~~~~~~~~~~l~~~l~~~l~-~~~ 335 (398)
T cd03796 262 RVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGIP-EVLPPD----MILLAEPDVESIVRKLEEAIS-ILR 335 (398)
T ss_pred HHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCCch-hheeCC----ceeecCCCHHHHHHHHHHHHh-Chh
Confidence 99999999999999999999999999999999999999999986 888776 433334499999999999998 776
Q ss_pred HHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHhhhhh
Q psy15555 449 TKTRISQNAVSSV-DRFSMEEFKNGFLTFTQPLFKVM 484 (488)
Q Consensus 449 ~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~~~~~~~ 484 (488)
....+++++++.+ ++|||+.+++++.++|++++...
T Consensus 336 ~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~~~~ 372 (398)
T cd03796 336 TGKHDPWSFHNRVKKMYSWEDVAKRTEKVYDRILQTP 372 (398)
T ss_pred hhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhcCC
Confidence 6667788888877 99999999999999999988643
No 6
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=3.9e-39 Score=316.46 Aligned_cols=376 Identities=26% Similarity=0.376 Sum_probs=274.2
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
|||+|++++.. .||+|+++..++++|.++| ++|.++|...+... .... ....++.+..... +...
T Consensus 1 mkIl~~~~~~~-~gG~e~~~~~la~~L~~~G--~~V~v~~~~~~~~~--~~~~--------~~~~~~~i~~~~~--~~~~ 65 (392)
T cd03805 1 LRVAFIHPDLG-IGGAERLVVDAALALQSRG--HEVTIYTSHHDPSH--CFEE--------TKDGTLPVRVRGD--WLPR 65 (392)
T ss_pred CeEEEECCCCC-CchHHHHHHHHHHHHHhCC--CeEEEEcCCCCchh--cchh--------ccCCeeEEEEEeE--EEcc
Confidence 79999999876 5679999999999999995 55555554322110 0000 0011022222111 1222
Q ss_pred cCchhHHHHHHHHHHHHHHH--HHhhhcCCcEEEecCCccchhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccC
Q psy15555 133 SLYPYFTLLGQSIGSMILGV--EALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNN 210 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~--~~l~~~~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~ 210 (488)
..+.++..+...+....... ...+..++|+||.+.. ....+......+.|++.++|.|....
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~-~~~~~~~~~~~~~~~i~~~h~~~~~~--------------- 129 (392)
T cd03805 66 SIFGRFHILCAYLRMLYLALYLLLLPDEKYDVFIVDQV-SACVPLLKLFSPSKILFYCHFPDQLL--------------- 129 (392)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHhcccCCCCEEEEcCc-chHHHHHHHhcCCcEEEEEecChHHh---------------
Confidence 22333222323333222222 1356679999986642 33334444344588999999764211
Q ss_pred ccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccC-C-ceEEEcCCCCchhhhccCC-----
Q psy15555 211 SQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQ-L-KTYKLYPPCDTEDLKKITH----- 283 (488)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~-~-k~~vi~~~~d~~~~~~~~~----- 283 (488)
....+..+..+...+.++++..++.+|.++++|+.+++.+.+.++.. . ++.+++|++|.+.+.+...
T Consensus 130 ------~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~~~~~~~~~ 203 (392)
T cd03805 130 ------AQRGSLLKRLYRKPFDWLEEFTTGMADKIVVNSNFTASVFKKTFPSLAKNPREVVYPCVDTDSFESTSEDPDPG 203 (392)
T ss_pred ------cCCCcHHHHHHHHHHHHHHHHHhhCceEEEEcChhHHHHHHHHhcccccCCcceeCCCcCHHHcCccccccccc
Confidence 00122333445556677888899999999999999999998866532 2 3459999999887754322
Q ss_pred --CCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCC--CcHHHHHHHHHHHHh-cCCCCc
Q psy15555 284 --SKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNE--EDEVCVKDMQDLCKH-LSLENN 358 (488)
Q Consensus 284 --~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~--~~~~~~~~l~~~~~~-~~l~~~ 358 (488)
...++.++++++|++.+.||++.+++|+.++.++.. ..++++|+++|+++.. ++.++.+++++.+++ .++.++
T Consensus 204 ~~~~~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~--~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 281 (392)
T cd03805 204 LLIPKSGKKTFLSINRFERKKNIALAIEAFAILKDKLA--EFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQ 281 (392)
T ss_pred ccccCCCceEEEEEeeecccCChHHHHHHHHHHHhhcc--cccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCce
Confidence 133567899999999999999999999999987630 0048999999988643 233566889999999 999999
Q ss_pred EEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC-CHHHHHH
Q psy15555 359 VEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQ 437 (488)
Q Consensus 359 v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~ 437 (488)
|.|.|+++.+++..+|+.||+++.+|..|++|++++|||++|+|||+++.++.. |++.++ .+|++++ |++++++
T Consensus 282 V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~~-e~i~~~----~~g~~~~~~~~~~a~ 356 (392)
T cd03805 282 VIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGGPL-ETVVDG----ETGFLCEPTPEEFAE 356 (392)
T ss_pred EEEeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCCcH-HHhccC----CceEEeCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999986 888887 7899886 9999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHH-hhcCHHHHHHHH
Q psy15555 438 TIKLILHLSQDTKTRISQNAVSSV-DRFSMEEFKNGF 473 (488)
Q Consensus 438 ~i~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~ 473 (488)
+|.++++ +++.++++++++++.+ ++|||+.+++++
T Consensus 357 ~i~~l~~-~~~~~~~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 357 AMLKLAN-DPDLADRMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred HHHHHHh-ChHHHHHHHHHHHHHHHHhcCHHHHhhhC
Confidence 9999999 9999999999999998 999999998764
No 7
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=2.3e-38 Score=312.16 Aligned_cols=387 Identities=12% Similarity=0.050 Sum_probs=268.4
Q ss_pred cEEEEeccC-CCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhh-hhcccccCCCeeEEEEeecccee
Q psy15555 53 KTVAFFHPY-CNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAH-QRFNIVLPDQVINFVYLYRRKFV 130 (488)
Q Consensus 53 ~rI~~~~~~-~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~ 130 (488)
|||++++.. .+..||.+..+..++++|.++ |++|.++|..+............ ..+....... +++.+++.....
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~--G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~-i~v~r~~~~~~~ 77 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAAR--GHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGG-VTVWRCPLYVPK 77 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHC--CCeEEEEecCCCCCCCCCCcccccccceeeecCC-eEEEEccccCCC
Confidence 799998754 456678899999999999998 55555655543221100000000 0001111123 666655542221
Q ss_pred eccCchhH-HHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhh---hhhhhCCCeeEEEEeCCccchHHHHHHHhhhh
Q psy15555 131 EASLYPYF-TLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP---LFSYIGGSKVACYIHYPTITKEMLTRVARRVI 206 (488)
Q Consensus 131 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~---~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~ 206 (488)
......+. ......+.......+.++ .+||+||.+.+.....+ .++...++|+++.+|... .+.. ..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Div~~~~p~~~~~~~~~~~~~~~~~~~v~~~~d~~--~~~~---~~--- 148 (412)
T PRK10307 78 QPSGLKRLLHLGSFALSSFFPLLAQRR-WRPDRVIGVVPTLFCAPGARLLARLSGARTWLHIQDYE--VDAA---FG--- 148 (412)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhccC-CCCCEEEEeCCcHHHHHHHHHHHHhhCCCEEEEeccCC--HHHH---HH---
Confidence 11111111 111111222222222222 78999998764332222 233356788887776422 1110 00
Q ss_pred cccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCC--
Q psy15555 207 THNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHS-- 284 (488)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~-- 284 (488)
.. .. ......+....+++.+++++|.++++|+.+++.+.+.+..+.++.+++|++|.+.+.+....
T Consensus 149 ---------~~-~~--~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~ 216 (412)
T PRK10307 149 ---------LG-LL--KGGKVARLATAFERSLLRRFDNVSTISRSMMNKAREKGVAAEKVIFFPNWSEVARFQPVADADV 216 (412)
T ss_pred ---------hC-Cc--cCcHHHHHHHHHHHHHHhhCCEEEecCHHHHHHHHHcCCCcccEEEECCCcCHhhcCCCCccch
Confidence 00 00 11122344556778888999999999999999998865555689999999998776543211
Q ss_pred --------CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCC
Q psy15555 285 --------KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLE 356 (488)
Q Consensus 285 --------~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~ 356 (488)
..+++++++|+|++.+.||++.+++|++.+.+ . ++++|+|+|+|+.. ++++++++++++.
T Consensus 217 ~~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l~~-~-----~~~~l~ivG~g~~~------~~l~~~~~~~~l~ 284 (412)
T PRK10307 217 DALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDAARRLRD-R-----PDLIFVICGQGGGK------ARLEKMAQCRGLP 284 (412)
T ss_pred HHHHHHcCCCCCCEEEEEcCccccccCHHHHHHHHHHhcc-C-----CCeEEEEECCChhH------HHHHHHHHHcCCC
Confidence 12456899999999999999999999998854 3 78999999999643 7888899999986
Q ss_pred CcEEEecCCChHHHHHHHHhCcEEEEcCCCCcC----CccHHHHHHcCCcEEEeCCCCC-ccceeccCCCccccceecC-
Q psy15555 357 NNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHF----GIGIVECMAAGLIMIAHKSGGP-KMDIVIEDPETCRNGFLAC- 430 (488)
Q Consensus 357 ~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~----g~~~lEa~a~G~PvI~~~~~~~-~~eiv~~~~~~~~~g~~~~- 430 (488)
+|.|+|+++.+++..+|+.||+++.||..|++ |.+++|||++|+|||+++.+|. ..+++. . +|++++
T Consensus 285 -~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~-~-----~G~~~~~ 357 (412)
T PRK10307 285 -NVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTELGQLVE-G-----IGVCVEP 357 (412)
T ss_pred -ceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHh-C-----CcEEeCC
Confidence 79999999999999999999999999988874 5668999999999999998763 236665 3 688875
Q ss_pred -CHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHhhhh
Q psy15555 431 -DEVEYAQTIKLILHLSQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQPLFKV 483 (488)
Q Consensus 431 -~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~~~~~~ 483 (488)
|+++++++|.++++ |++.+.+|+++|++.+ ++|||+.+++++.++|++++.+
T Consensus 358 ~d~~~la~~i~~l~~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 411 (412)
T PRK10307 358 ESVEALVAAIAALAR-QALLRPKLGTVAREYAERTLDKENVLRQFIADIRGLVAE 411 (412)
T ss_pred CCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999 9999999999999999 7899999999999999998864
No 8
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=4.7e-38 Score=306.67 Aligned_cols=284 Identities=19% Similarity=0.232 Sum_probs=229.5
Q ss_pred HHHhhhcCCcEEEecCCccchhh-hhhh--hCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHH
Q psy15555 152 VEALLSFQPDIYIDTMGYAFTYP-LFSY--IGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYY 228 (488)
Q Consensus 152 ~~~l~~~~pDiii~~~~~~~~~~-~~~~--~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (488)
.+.+++.+||+||.+.+...... .++. ..+.+++.+.|...+.. ......+
T Consensus 111 ~~~~~~~~~diihaH~~~~~~~~~~~~~~~~~~~~~~~t~Hg~d~~~-------------------------~~~~~~~- 164 (406)
T PRK15427 111 AQVATPFVADVFIAHFGPAGVTAAKLRELGVLRGKIATIFHGIDISS-------------------------REVLNHY- 164 (406)
T ss_pred hhhhccCCCCEEEEcCChHHHHHHHHHHhCCCCCCeEEEEccccccc-------------------------chhhhhh-
Confidence 34557789999998764432221 2221 12335677888654211 0000001
Q ss_pred HHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCCCCCCCeEEEEeeccCCCCChHHHH
Q psy15555 229 KVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQL 308 (488)
Q Consensus 229 ~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll 308 (488)
....+..++++|.++++|+..++.+.+.+..++++.+++||+|.+.+.+.......+...++++|++.+.||++.++
T Consensus 165 ---~~~~~~~~~~ad~vv~~S~~~~~~l~~~g~~~~ki~vi~nGvd~~~f~~~~~~~~~~~~~il~vGrl~~~Kg~~~ll 241 (406)
T PRK15427 165 ---TPEYQQLFRRGDLMLPISDLWAGRLQKMGCPPEKIAVSRMGVDMTRFSPRPVKAPATPLEIISVARLTEKKGLHVAI 241 (406)
T ss_pred ---hHHHHHHHHhCCEEEECCHHHHHHHHHcCCCHHHEEEcCCCCCHHHcCCCccccCCCCeEEEEEeCcchhcCHHHHH
Confidence 11233466789999999999999998864444589999999999887654333334567899999999999999999
Q ss_pred HHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCC--
Q psy15555 309 RAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWN-- 386 (488)
Q Consensus 309 ~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~-- 386 (488)
+|++.+.++. ++++++|+|.|+. .+++++.++++|+.++|.|.|+++++|+.++|+.||+++.||..
T Consensus 242 ~a~~~l~~~~-----~~~~l~ivG~G~~------~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~ 310 (406)
T PRK15427 242 EACRQLKEQG-----VAFRYRILGIGPW------ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGA 310 (406)
T ss_pred HHHHHHHhhC-----CCEEEEEEECchh------HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCC
Confidence 9999998876 7999999999963 37899999999999999999999999999999999999999964
Q ss_pred ----CcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q psy15555 387 ----EHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILHLSQDTKTRISQNAVSS 460 (488)
Q Consensus 387 ----e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~ 460 (488)
|++|++++|||++|+|||+++.+|.. |++.++ .+|++++ |+++++++|.+++++|++.+++|+++|++.
T Consensus 311 ~g~~Eg~p~~llEAma~G~PVI~t~~~g~~-E~v~~~----~~G~lv~~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~ 385 (406)
T PRK15427 311 DGDMEGIPVALMEAMAVGIPVVSTLHSGIP-ELVEAD----KSGWLVPENDAQALAQRLAAFSQLDTDELAPVVKRAREK 385 (406)
T ss_pred CCCccCccHHHHHHHhCCCCEEEeCCCCch-hhhcCC----CceEEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999997 999988 8999986 999999999999976889999999999999
Q ss_pred H-hhcCHHHHHHHHHHHHHHh
Q psy15555 461 V-DRFSMEEFKNGFLTFTQPL 480 (488)
Q Consensus 461 ~-~~~s~~~~~~~~~~~~~~~ 480 (488)
+ ++|+|+.+++++.++++++
T Consensus 386 v~~~f~~~~~~~~l~~~~~~~ 406 (406)
T PRK15427 386 VETDFNQQVINRELASLLQAL 406 (406)
T ss_pred HHHhcCHHHHHHHHHHHHhhC
Confidence 9 9999999999999998763
No 9
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=6.9e-38 Score=305.37 Aligned_cols=359 Identities=17% Similarity=0.155 Sum_probs=261.2
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
.||+++.+... .||+|+++.+++++|.++++++.++.++.. + . ..+.... .+ +.+..++....
T Consensus 2 ~~il~ii~~~~-~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~-~-~---~~~~~~~-------~~-i~~~~~~~~~~--- 64 (374)
T TIGR03088 2 PLIVHVVYRFD-VGGLENGLVNLINHLPADRYRHAVVALTEV-S-A---FRKRIQR-------PD-VAFYALHKQPG--- 64 (374)
T ss_pred ceEEEEeCCCC-CCcHHHHHHHHHhhccccccceEEEEcCCC-C-h---hHHHHHh-------cC-ceEEEeCCCCC---
Confidence 47888887775 577999999999999988555444433221 2 1 1111100 12 44444432211
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhhhhhCCCeeEEE-EeCCccchHHHHHHHhhhhcccCc
Q psy15555 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACY-IHYPTITKEMLTRVARRVITHNNS 211 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~~~~~~~~~v~~-~h~p~~~~d~~~~~~~~~~~~~~~ 211 (488)
.. +...+.+.+++++.+|||||.+...+.....+.+..+.|..++ .|.... .
T Consensus 65 ~~----------~~~~~~l~~~l~~~~~Divh~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~----~------------- 117 (374)
T TIGR03088 65 KD----------VAVYPQLYRLLRQLRPDIVHTRNLAALEAQLPAALAGVPARIHGEHGRDV----F------------- 117 (374)
T ss_pred CC----------hHHHHHHHHHHHHhCCCEEEEcchhHHHHHHHHHhcCCCeEEEeecCccc----c-------------
Confidence 11 1122446678889999999987543322222333445564332 221110 0
Q ss_pred cccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccC-CceEEEcCCCCchhhhccCC-------
Q psy15555 212 QRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQ-LKTYKLYPPCDTEDLKKITH------- 283 (488)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~-~k~~vi~~~~d~~~~~~~~~------- 283 (488)
....+.. ...++.+...+.+|.++++|+.+++.+.+.++.+ .++.+++|++|.+.+.+...
T Consensus 118 --------~~~~~~~---~~~~~~~~~~~~~~~~i~vs~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~ 186 (374)
T TIGR03088 118 --------DLDGSNW---KYRWLRRLYRPLIHHYVAVSRDLEDWLRGPVKVPPAKIHQIYNGVDTERFHPSRGDRSPILP 186 (374)
T ss_pred --------cchhhHH---HHHHHHHHHHhcCCeEEEeCHHHHHHHHHhcCCChhhEEEeccCccccccCCCccchhhhhH
Confidence 0000011 1122333445668999999999999998876643 57899999999877654321
Q ss_pred --CCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEE
Q psy15555 284 --SKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEF 361 (488)
Q Consensus 284 --~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~ 361 (488)
...+++++++++||+.+.||++.+++|++.+.++.++ ..++++|+++|+|+.. +++++.++++++.+++.+
T Consensus 187 ~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~-~~~~~~l~i~G~g~~~------~~~~~~~~~~~~~~~v~~ 259 (374)
T TIGR03088 187 PDFFADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPE-GAERLRLVIVGDGPAR------GACEQMVRAAGLAHLVWL 259 (374)
T ss_pred hhcCCCCCeEEEEEecCCcccCHHHHHHHHHHHHHhCcc-cccceEEEEecCCchH------HHHHHHHHHcCCcceEEE
Confidence 1234678999999999999999999999999876510 0137899999998643 778899999999889999
Q ss_pred ecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHH
Q psy15555 362 KVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTI 439 (488)
Q Consensus 362 ~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i 439 (488)
.|.. +|+.++|+.||++++||..|++|++++|||+||+|||+++.++.. |++.++ .+|++++ |++++++++
T Consensus 260 ~g~~--~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g~~-e~i~~~----~~g~~~~~~d~~~la~~i 332 (374)
T TIGR03088 260 PGER--DDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIATAVGGNP-ELVQHG----VTGALVPPGDAVALARAL 332 (374)
T ss_pred cCCc--CCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEEEcCCCCcH-HHhcCC----CceEEeCCCCHHHHHHHH
Confidence 9976 899999999999999999999999999999999999999999987 999888 8899875 899999999
Q ss_pred HHHHccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHhh
Q psy15555 440 KLILHLSQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQPLF 481 (488)
Q Consensus 440 ~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~~~~ 481 (488)
.++++ +++.+.+++++|++.+ ++|||+.+++++.++|++++
T Consensus 333 ~~l~~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~ 374 (374)
T TIGR03088 333 QPYVS-DPAARRAHGAAGRARAEQQFSINAMVAAYAGLYDQLL 374 (374)
T ss_pred HHHHh-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhC
Confidence 99999 9999999999999998 89999999999999998763
No 10
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=5.7e-38 Score=312.93 Aligned_cols=360 Identities=14% Similarity=0.189 Sum_probs=259.6
Q ss_pred ccccEEEEecc-C-CCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEe---
Q psy15555 50 NVLKTVAFFHP-Y-CNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYL--- 124 (488)
Q Consensus 50 ~~~~rI~~~~~-~-~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--- 124 (488)
+++|||+++.. . ....||.++.+.+++++|.++ |++|.+++...+... . .. + +.+...
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~--G~eV~vlt~~~~~~~-~-~~------g-------~~v~~~~~~ 118 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREM--GDEVLVVTTDEGVPQ-E-FH------G-------AKVIGSWSF 118 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHC--CCeEEEEecCCCCCc-c-cc------C-------ceeeccCCc
Confidence 56899997642 2 234578899999999999998 555666665433211 0 00 0 111110
Q ss_pred eccceeeccCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhh--hhhhhCCCeeEEEEeCCccchHHHHHHH
Q psy15555 125 YRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP--LFSYIGGSKVACYIHYPTITKEMLTRVA 202 (488)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~--~~~~~~~~~~v~~~h~p~~~~d~~~~~~ 202 (488)
+.+... ...+. +.....+.+.+++.+||+||.+......+. .+....++|++...|...... ..
T Consensus 119 ~~~~~~-~~~~~--------~~~~~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~h~~~~~~-----~~ 184 (465)
T PLN02871 119 PCPFYQ-KVPLS--------LALSPRIISEVARFKPDLIHASSPGIMVFGALFYAKLLCVPLVMSYHTHVPVY-----IP 184 (465)
T ss_pred CCccCC-Cceee--------ccCCHHHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCCCEEEEEecCchhh-----hh
Confidence 000000 00000 000013556778899999997754322222 222356899998887432100 00
Q ss_pred hhhhcccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhcc-CCceEEEcCCCCchhhhcc
Q psy15555 203 RRVITHNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNC-QLKTYKLYPPCDTEDLKKI 281 (488)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~-~~k~~vi~~~~d~~~~~~~ 281 (488)
.. ..... .+.+..+.+.+.+.+|.++++|+..++.+.+.+.. ..++.+++|++|.+.+.+.
T Consensus 185 -------------~~----~~~~~-~~~~~~~~r~~~~~ad~ii~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~ 246 (465)
T PLN02871 185 -------------RY----TFSWL-VKPMWDIIRFLHRAADLTLVTSPALGKELEAAGVTAANRIRVWNKGVDSESFHPR 246 (465)
T ss_pred -------------cc----cchhh-HHHHHHHHHHHHhhCCEEEECCHHHHHHHHHcCCCCcCeEEEeCCccCccccCCc
Confidence 00 00011 11112344567788999999999999999986533 4589999999998877543
Q ss_pred CCC---------CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHh
Q psy15555 282 THS---------KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKH 352 (488)
Q Consensus 282 ~~~---------~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~ 352 (488)
... ..+++++++|+|++.++||++.++++++++ ++++|+|+|+|+.. +++++++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~vGrl~~~K~~~~li~a~~~~---------~~~~l~ivG~G~~~------~~l~~~~~~ 311 (465)
T PLN02871 247 FRSEEMRARLSGGEPEKPLIVYVGRLGAEKNLDFLKRVMERL---------PGARLAFVGDGPYR------EELEKMFAG 311 (465)
T ss_pred cccHHHHHHhcCCCCCCeEEEEeCCCchhhhHHHHHHHHHhC---------CCcEEEEEeCChHH------HHHHHHhcc
Confidence 211 123578899999999999999999988765 68999999998632 667776653
Q ss_pred cCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceecc---CCCccccceec
Q psy15555 353 LSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIE---DPETCRNGFLA 429 (488)
Q Consensus 353 ~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~---~~~~~~~g~~~ 429 (488)
.+|.|+|+++.+|+..+|+.||++|+||..|++|++++|||++|+|||+++.+|.. |++++ + .+|+++
T Consensus 312 ----~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg~~-eiv~~~~~~----~~G~lv 382 (465)
T PLN02871 312 ----TPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPVVAARAGGIP-DIIPPDQEG----KTGFLY 382 (465)
T ss_pred ----CCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCEEEcCCCCcH-hhhhcCCCC----CceEEe
Confidence 46999999999999999999999999999999999999999999999999999986 99988 6 899998
Q ss_pred C--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHH-HHHHhhhh
Q psy15555 430 C--DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLT-FTQPLFKV 483 (488)
Q Consensus 430 ~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~-~~~~~~~~ 483 (488)
+ |+++++++|.++++ |++.+++|++++++.+++|||+.+++++++ .|++++..
T Consensus 383 ~~~d~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~fsw~~~a~~l~~~~Y~~~~~~ 438 (465)
T PLN02871 383 TPGDVDDCVEKLETLLA-DPELRERMGAAAREEVEKWDWRAATRKLRNEQYSAAIWF 438 (465)
T ss_pred CCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 6 99999999999999 999999999999999999999999999998 69888764
No 11
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=1.6e-37 Score=305.97 Aligned_cols=372 Identities=16% Similarity=0.189 Sum_probs=261.9
Q ss_pred CCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeeccCchhHHHHHH
Q psy15555 64 AGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEASLYPYFTLLGQ 143 (488)
Q Consensus 64 ~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 143 (488)
..||.|+++.+++++|.++| ++|.+++.......... .....+ +.+..++...+..............
T Consensus 18 ~~GG~e~~v~~la~~L~~~G--~~V~v~~~~~~~~~~~~---------~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~ 85 (405)
T TIGR03449 18 DAGGMNVYILETATELARRG--IEVDIFTRATRPSQPPV---------VEVAPG-VRVRNVVAGPYEGLDKEDLPTQLCA 85 (405)
T ss_pred CCCCceehHHHHHHHHhhCC--CEEEEEecccCCCCCCc---------cccCCC-cEEEEecCCCcccCCHHHHHHHHHH
Confidence 46889999999999999994 55555554322111000 011122 5555443322211100011111111
Q ss_pred HHHHHHHHHHHhh--hcCCcEEEecCCccchhh-hhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccc
Q psy15555 144 SIGSMILGVEALL--SFQPDIYIDTMGYAFTYP-LFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPIL 220 (488)
Q Consensus 144 ~~~~~~~~~~~l~--~~~pDiii~~~~~~~~~~-~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 220 (488)
... ....+.++ ..+||+||.+...+.... .++...++|++...|.... + .... ....
T Consensus 86 ~~~--~~~~~~~~~~~~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h~~~~---~----~~~~--------~~~~--- 145 (405)
T TIGR03449 86 FTG--GVLRAEARHEPGYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAHTLAA---V----KNAA--------LADG--- 145 (405)
T ss_pred HHH--HHHHHHhhccCCCCCeEEechHHHHHHHHHHHHhcCCCEEEeccchHH---H----HHHh--------ccCC---
Confidence 110 11223333 347999998763333222 2233567899988884320 0 0000 0000
Q ss_pred hhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhcc-CCceEEEcCCCCchhhhccCC-------CCCCCCeEE
Q psy15555 221 TSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNC-QLKTYKLYPPCDTEDLKKITH-------SKTDGPVKI 292 (488)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~-~~k~~vi~~~~d~~~~~~~~~-------~~~~~~~~i 292 (488)
.... .......++.+++.+|.++++|+...+.+.+.++. +.++.+++||+|.+.+.+... ....+++++
T Consensus 146 ~~~~---~~~~~~~e~~~~~~~d~vi~~s~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~i 222 (405)
T TIGR03449 146 DTPE---PEARRIGEQQLVDNADRLIANTDEEARDLVRHYDADPDRIDVVAPGADLERFRPGDRATERARLGLPLDTKVV 222 (405)
T ss_pred CCCc---hHHHHHHHHHHHHhcCeEEECCHHHHHHHHHHcCCChhhEEEECCCcCHHHcCCCcHHHHHHhcCCCCCCcEE
Confidence 0000 01122235567788999999999999988876654 357899999999877654321 122457899
Q ss_pred EEeeccCCCCChHHHHHHHHHhHHhhhhhccCc--eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHH
Q psy15555 293 ISVAQFRPEKDHPLQLRAMYQLRQIISEELWDN--LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDM 370 (488)
Q Consensus 293 ~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~--~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el 370 (488)
+++|++.+.||++.+++|++.+.++. ++ ++|+++|..... .....++++++++++++.++|.+.|.++.+++
T Consensus 223 ~~~G~l~~~K~~~~li~a~~~l~~~~-----~~~~~~l~ivG~~~~~-g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~ 296 (405)
T TIGR03449 223 AFVGRIQPLKAPDVLLRAVAELLDRD-----PDRNLRVIVVGGPSGS-GLATPDALIELAAELGIADRVRFLPPRPPEEL 296 (405)
T ss_pred EEecCCCcccCHHHHHHHHHHHHhhC-----CCcceEEEEEeCCCCC-cchHHHHHHHHHHHcCCCceEEECCCCCHHHH
Confidence 99999999999999999999998776 55 999999964321 11334788999999999899999999999999
Q ss_pred HHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHHHHccCHH
Q psy15555 371 KKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILHLSQD 448 (488)
Q Consensus 371 ~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~~~~~ 448 (488)
.++|+.||++++||..|++|++++|||++|+|||+++.++.. |++.++ .+|++++ |+++++++|.++++ +++
T Consensus 297 ~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~~~-e~i~~~----~~g~~~~~~d~~~la~~i~~~l~-~~~ 370 (405)
T TIGR03449 297 VHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGGLP-VAVADG----ETGLLVDGHDPADWADALARLLD-DPR 370 (405)
T ss_pred HHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCCcH-hhhccC----CceEECCCCCHHHHHHHHHHHHh-CHH
Confidence 999999999999999999999999999999999999999886 888887 8899986 99999999999999 999
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhh
Q psy15555 449 TKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLFK 482 (488)
Q Consensus 449 ~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~ 482 (488)
.+.+|++++++.+++|||+.+++++.++|.+++.
T Consensus 371 ~~~~~~~~~~~~~~~fsw~~~~~~~~~~y~~~~~ 404 (405)
T TIGR03449 371 TRIRMGAAAVEHAAGFSWAATADGLLSSYRDALA 404 (405)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 9999999999988889999999999999998763
No 12
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=2.4e-37 Score=301.53 Aligned_cols=356 Identities=17% Similarity=0.201 Sum_probs=263.1
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
|||++++ .+..||.++++.+++++|.++|+++.+ ++...+.... ... .. +.+...+.....
T Consensus 1 mki~~~~--~p~~gG~~~~~~~la~~L~~~G~~v~v--~~~~~~~~~~---~~~---------~~-~~~~~~~~~~~~-- 61 (371)
T cd04962 1 MKIGIVC--YPTYGGSGVVATELGKALARRGHEVHF--ITSSRPFRLD---EYS---------PN-IFFHEVEVPQYP-- 61 (371)
T ss_pred CceeEEE--EeCCCCccchHHHHHHHHHhcCCceEE--EecCCCcchh---hhc---------cC-eEEEEecccccc--
Confidence 7899886 345788999999999999999655554 4443221110 000 11 222222111110
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhh-hh-hhh---CCCeeEEEEeCCccchHHHHHHHhhhhc
Q psy15555 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP-LF-SYI---GGSKVACYIHYPTITKEMLTRVARRVIT 207 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~-~~-~~~---~~~~~v~~~h~p~~~~d~~~~~~~~~~~ 207 (488)
..............+.+.+++.+||+||.+...+..+. .+ ... .++|++...|......
T Consensus 62 ----~~~~~~~~~~~~~~l~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~------------ 125 (371)
T cd04962 62 ----LFQYPPYDLALASKIAEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITL------------ 125 (371)
T ss_pred ----hhhcchhHHHHHHHHHHHHhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCcccc------------
Confidence 00000111222345667788899999997754443322 11 111 2788888888542100
Q ss_pred ccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCC----
Q psy15555 208 HNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITH---- 283 (488)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~---- 283 (488)
... ...+..+.+..++++|.++++|+.+++.+.+.+..+.++.+++|++|...+.+...
T Consensus 126 ------------~~~-----~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~i~vi~n~~~~~~~~~~~~~~~~ 188 (371)
T cd04962 126 ------------VGQ-----DPSFQPATRFSIEKSDGVTAVSESLRQETYELFDITKEIEVIPNFVDEDRFRPKPDEALK 188 (371)
T ss_pred ------------ccc-----cccchHHHHHHHhhCCEEEEcCHHHHHHHHHhcCCcCCEEEecCCcCHhhcCCCchHHHH
Confidence 000 00111234456788999999999999999887766678999999998766543321
Q ss_pred ---CCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEE
Q psy15555 284 ---SKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVE 360 (488)
Q Consensus 284 ---~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~ 360 (488)
....++++++++|++.+.||++.+++|+..+.++ ++++++++|.+++. +++++.+++.++.++|.
T Consensus 189 ~~~~~~~~~~~il~~g~l~~~K~~~~li~a~~~l~~~------~~~~l~i~G~g~~~------~~~~~~~~~~~~~~~v~ 256 (371)
T cd04962 189 RRLGAPEGEKVLIHISNFRPVKRIDDVIRIFAKVRKE------VPARLLLVGDGPER------SPAERLARELGLQDDVL 256 (371)
T ss_pred HhcCCCCCCeEEEEecccccccCHHHHHHHHHHHHhc------CCceEEEEcCCcCH------HHHHHHHHHcCCCceEE
Confidence 1234678899999999999999999999998765 47899999998643 67888888899888999
Q ss_pred EecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHH
Q psy15555 361 FKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQT 438 (488)
Q Consensus 361 ~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~ 438 (488)
+.|.. +++..+|+.||++++||..|++|++++|||++|+|||+++.++.. |++.++ .+|++++ |.++++++
T Consensus 257 ~~g~~--~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~~~~-e~i~~~----~~G~~~~~~~~~~l~~~ 329 (371)
T cd04962 257 FLGKQ--DHVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNAGGIP-EVVKHG----ETGFLVDVGDVEAMAEY 329 (371)
T ss_pred EecCc--ccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCCCch-hhhcCC----CceEEcCCCCHHHHHHH
Confidence 99987 789999999999999999999999999999999999999999886 999887 8899987 89999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHh
Q psy15555 439 IKLILHLSQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQPL 480 (488)
Q Consensus 439 i~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~~~ 480 (488)
+.++++ +++.+.+|++++++.+ ++|||+.+++++.++|+++
T Consensus 330 i~~l~~-~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 330 ALSLLE-DDELWQEFSRAARNRAAERFDSERIVPQYEALYRRL 371 (371)
T ss_pred HHHHHh-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999 9999999999999996 9999999999999999864
No 13
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=2.2e-36 Score=296.36 Aligned_cols=370 Identities=15% Similarity=0.173 Sum_probs=255.1
Q ss_pred EEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeecc
Q psy15555 54 TVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEAS 133 (488)
Q Consensus 54 rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 133 (488)
||+|+|+.++ |. ...|+++|.++ |++|.++|........ .. +++..++........
T Consensus 1 ~il~~~~~~p---~~---~~~la~~L~~~--G~~v~~~~~~~~~~~~---------------~~-v~~~~~~~~~~~~~~ 56 (396)
T cd03818 1 RILFVHQNFP---GQ---FRHLAPALAAQ--GHEVVFLTEPNAAPPP---------------GG-VRVVRYRPPRGPTSG 56 (396)
T ss_pred CEEEECCCCc---hh---HHHHHHHHHHC--CCEEEEEecCCCCCCC---------------CC-eeEEEecCCCCCCCC
Confidence 6899998876 22 45699999999 5556565554332111 01 444444432221111
Q ss_pred CchhHHHH----HHHHHHHHHHHHH-hhhcCCcEEEecCCccchhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcc
Q psy15555 134 LYPYFTLL----GQSIGSMILGVEA-LLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITH 208 (488)
Q Consensus 134 ~~~~~~~~----~~~~~~~~~~~~~-l~~~~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~ 208 (488)
........ .+.........++ .+.++||+||.+.+|+..+.+.....++|++.++|......
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~~~~~~~~------------- 123 (396)
T cd03818 57 THPYLREFEEAVLRGQAVARALLALRAKGFRPDVIVAHPGWGETLFLKDVWPDAPLIGYFEFYYRAE------------- 123 (396)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccchhhhHHHhCCCCCEEEEEeeeecCC-------------
Confidence 22221111 1111112222222 24568999999998887765555456789999887544211
Q ss_pred cCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCC----
Q psy15555 209 NNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHS---- 284 (488)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~---- 284 (488)
.....+..............+.........++.+|.++++|+++++.+.+.+. .++.+|+||+|.+.+.+....
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~~~--~ki~vI~ngvd~~~f~~~~~~~~~~ 201 (396)
T cd03818 124 GADVGFDPEFPPSLDDALRLRNRNALILLALAQADAGVSPTRWQRSTFPAELR--SRISVIHDGIDTDRLRPDPQARLRL 201 (396)
T ss_pred CCCCCCCCCCCCchhHHHHHHHhhhHhHHHHHhCCEEECCCHHHHhhCcHhhc--cceEEeCCCccccccCCCchhhhcc
Confidence 00000000000010000111112223445778999999999999999887554 579999999998877654321
Q ss_pred -----CCCCCeEEEEeec-cCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCC------CcHHHHHHHHHHHH-
Q psy15555 285 -----KTDGPVKIISVAQ-FRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNE------EDEVCVKDMQDLCK- 351 (488)
Q Consensus 285 -----~~~~~~~i~~~g~-~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~------~~~~~~~~l~~~~~- 351 (488)
...++++++|+|| +.+.||++.+++|+..+.++. |+++++|+|++... ..++..+++.+...
T Consensus 202 ~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~-----~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~ 276 (396)
T cd03818 202 PNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRLLRAR-----PDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGG 276 (396)
T ss_pred cccccCCCCCeEEEEECCCcccccCHHHHHHHHHHHHHHC-----CCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhc
Confidence 1235678999997 999999999999999998877 89999999974210 00112223222222
Q ss_pred hcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC-
Q psy15555 352 HLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC- 430 (488)
Q Consensus 352 ~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~- 430 (488)
..+ .++|+|+|.+|++++..+|+.||+++++|..|++|++++||||||+|||+++.++.. |++.++ .+|++++
T Consensus 277 ~~~-~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~~g~~-e~i~~~----~~G~lv~~ 350 (396)
T cd03818 277 RLD-LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTAPVR-EVITDG----ENGLLVDF 350 (396)
T ss_pred ccC-cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCCCCch-hhcccC----CceEEcCC
Confidence 222 478999999999999999999999999999999999999999999999999999886 999888 8999986
Q ss_pred -CHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHH
Q psy15555 431 -DEVEYAQTIKLILHLSQDTKTRISQNAVSSV-DRFSMEEFKNGFL 474 (488)
Q Consensus 431 -~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~ 474 (488)
|+++++++|.++++ +++.+.+|+++|++.+ ++|||+.++++|.
T Consensus 351 ~d~~~la~~i~~ll~-~~~~~~~l~~~ar~~~~~~fs~~~~~~~~~ 395 (396)
T cd03818 351 FDPDALAAAVIELLD-DPARRARLRRAARRTALRYDLLSVCLPRQL 395 (396)
T ss_pred CCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 89999999999999 9999999999999999 7799999999885
No 14
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=100.00 E-value=9.5e-37 Score=301.42 Aligned_cols=350 Identities=18% Similarity=0.156 Sum_probs=249.5
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
.+..|+|.... |..+.+.+++++|.+++|++++++++.++++ .+.... .+ ... +.+.++|.+..
T Consensus 50 ~~~iW~Ha~s~---Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~--~~~~~~---~~----~~~-~~~~~~P~d~~--- 113 (425)
T PRK05749 50 GPLIWFHAVSV---GETRAAIPLIRALRKRYPDLPILVTTMTPTG--SERAQA---LF----GDD-VEHRYLPYDLP--- 113 (425)
T ss_pred CCeEEEEeCCH---HHHHHHHHHHHHHHHhCCCCcEEEeCCCccH--HHHHHH---hc----CCC-ceEEEecCCcH---
Confidence 34567776544 6669999999999999999999888877443 222221 11 122 55667777655
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhcCCcEEE--ecCCccchhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccC
Q psy15555 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYI--DTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNN 210 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii--~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~ 210 (488)
..+.+++++++||+++ +++.|++.+..++ ..++|+++..|.
T Consensus 114 ----------------~~~~~~l~~~~Pd~v~~~~~~~~~~~l~~~~-~~~ip~vl~~~~-------------------- 156 (425)
T PRK05749 114 ----------------GAVRRFLRFWRPKLVIIMETELWPNLIAELK-RRGIPLVLANAR-------------------- 156 (425)
T ss_pred ----------------HHHHHHHHhhCCCEEEEEecchhHHHHHHHH-HCCCCEEEEecc--------------------
Confidence 3477889999999776 4567888766655 678898875431
Q ss_pred ccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCC-CCchhhhcc-------C
Q psy15555 211 SQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPP-CDTEDLKKI-------T 282 (488)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~-~d~~~~~~~-------~ 282 (488)
.+..+...++.+..+.+.+++.+|.|+++|+.+++++.+.+..++ +.+++|. +|....... .
T Consensus 157 ---------~~~~s~~~~~~~~~~~r~~~~~~d~ii~~S~~~~~~l~~~g~~~~-i~vi~n~~~d~~~~~~~~~~~~~~r 226 (425)
T PRK05749 157 ---------LSERSFKRYQKFKRFYRLLFKNIDLVLAQSEEDAERFLALGAKNE-VTVTGNLKFDIEVPPELAARAATLR 226 (425)
T ss_pred ---------CChhhHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHHHHcCCCCC-cEecccccccCCCChhhHHHHHHHH
Confidence 111122223345566777888999999999999999998654334 7788875 333211110 0
Q ss_pred CCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCC-----
Q psy15555 283 HSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLEN----- 357 (488)
Q Consensus 283 ~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~----- 357 (488)
.....++++++++|++ .|+.+.+++|++++.++. |+++|+|+|+|+ ++.+++++.+++.|+..
T Consensus 227 ~~~~~~~~vil~~~~~--~~~~~~ll~A~~~l~~~~-----~~~~liivG~g~-----~r~~~l~~~~~~~gl~~~~~~~ 294 (425)
T PRK05749 227 RQLAPNRPVWIAASTH--EGEEELVLDAHRALLKQF-----PNLLLILVPRHP-----ERFKEVEELLKKAGLSYVRRSQ 294 (425)
T ss_pred HHhcCCCcEEEEeCCC--chHHHHHHHHHHHHHHhC-----CCcEEEEcCCCh-----hhHHHHHHHHHhCCCcEEEccC
Confidence 0011356778888864 677889999999998777 899999999997 55578999999888742
Q ss_pred --------cEEEecCCChHHHHHHHHhCcE-EEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCcccccee
Q psy15555 358 --------NVEFKVNLPYEDMKKEFSEGLI-GLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFL 428 (488)
Q Consensus 358 --------~v~~~g~~~~~el~~~~~~ad~-~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~ 428 (488)
+|.+.+.. +|+..+|+.||+ ++.+|..|++|++++|||++|+|||+++..+...++.+.. .+.+.++.
T Consensus 295 ~~~~~~~~~v~l~~~~--~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~-~~~g~~~~ 371 (425)
T PRK05749 295 GEPPSADTDVLLGDTM--GELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL-LQAGAAIQ 371 (425)
T ss_pred CCCCCCCCcEEEEecH--HHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH-HHCCCeEE
Confidence 34444444 899999999997 6667888999999999999999999988754444655432 01122333
Q ss_pred cCCHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhh
Q psy15555 429 ACDEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLFKV 483 (488)
Q Consensus 429 ~~~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~~ 483 (488)
+.|+++++++|.++++ |++.+++|+++|++.++.. ....+++.+.+.+.+.+
T Consensus 372 ~~d~~~La~~l~~ll~-~~~~~~~m~~~a~~~~~~~--~~~~~~~~~~l~~~l~~ 423 (425)
T PRK05749 372 VEDAEDLAKAVTYLLT-DPDARQAYGEAGVAFLKQN--QGALQRTLQLLEPYLPP 423 (425)
T ss_pred ECCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHhccc
Confidence 4599999999999999 9999999999999998443 46677777887776653
No 15
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=5.7e-36 Score=296.08 Aligned_cols=381 Identities=17% Similarity=0.135 Sum_probs=249.9
Q ss_pred CCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCC--hhHHHHHhhhhcccccCCCeeEEEEeeccceeeccCchhHHHH
Q psy15555 64 AGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDAS--PSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEASLYPYFTLL 141 (488)
Q Consensus 64 ~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 141 (488)
..||.++++.+|+++|.++|+-++|.++|...... ....... . ...... +.+..++........ ....
T Consensus 24 ~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~----~-~~~~~g-v~v~r~~~~~~~~~~----~~~~ 93 (439)
T TIGR02472 24 DTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQP----I-ERIAPG-ARIVRLPFGPRRYLR----KELL 93 (439)
T ss_pred CCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCC----e-eEeCCC-cEEEEecCCCCCCcC----hhhh
Confidence 45789999999999999986422555555421110 0000000 0 011123 666666542211000 0001
Q ss_pred HHH-HHHHHHHHHHhhh--cCCcEEEecCCccchhh-hhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccC
Q psy15555 142 GQS-IGSMILGVEALLS--FQPDIYIDTMGYAFTYP-LFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANN 217 (488)
Q Consensus 142 ~~~-~~~~~~~~~~l~~--~~pDiii~~~~~~~~~~-~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~ 217 (488)
... ........+.+++ .+|||||.+...+.... .++...++|++.+.|...... ..... ...
T Consensus 94 ~~~~~~~~~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~H~~~~~~--~~~~~------------~~~ 159 (439)
T TIGR02472 94 WPYLDELADNLLQHLRQQGHLPDLIHAHYADAGYVGARLSRLLGVPLIFTGHSLGREK--RRRLL------------AAG 159 (439)
T ss_pred hhhHHHHHHHHHHHHHHcCCCCCEEEEcchhHHHHHHHHHHHhCCCEEEecccccchh--hhhcc------------cCC
Confidence 111 1111233445554 37999998864333322 223356889999888532100 00000 000
Q ss_pred ccchhhhHHHH-HHHHHHHHHHhcccCEEEEcChhHHHH-HHHHhc-cCCceEEEcCCCCchhhhccCCC----------
Q psy15555 218 PILTSFKLFYY-KVFALLYSHVGKYSDIIMVNSSWTEEH-VIQLWN-CQLKTYKLYPPCDTEDLKKITHS---------- 284 (488)
Q Consensus 218 ~~~~~~~~~~~-~~~~~~~~~~~~~~d~ii~~s~~~~~~-~~~~~~-~~~k~~vi~~~~d~~~~~~~~~~---------- 284 (488)
.........+. ......++..++.+|.++++|+..... +....+ .+.|+.+||||+|.+.|.+....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~ 239 (439)
T TIGR02472 160 LKPQQIEKQYNISRRIEAEEETLAHASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDNLL 239 (439)
T ss_pred CChhhhhhhcchHHHHHHHHHHHHhCCEEEECCHHHHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHHHHH
Confidence 00000000010 000123567888999999998765433 333223 34589999999998887653211
Q ss_pred ----CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCc-----HHHHHHHHHHHHhcCC
Q psy15555 285 ----KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEED-----EVCVKDMQDLCKHLSL 355 (488)
Q Consensus 285 ----~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~-----~~~~~~l~~~~~~~~l 355 (488)
..++.++++++||+.+.||++.+++|++.+.+... .+++. +++|++++... .++.+++.+++++.++
T Consensus 240 ~~~~~~~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~---~~~l~-li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l 315 (439)
T TIGR02472 240 APFLKDPEKPPILAISRPDRRKNIPSLVEAYGRSPKLQE---MANLV-LVLGCRDDIRKMESQQREVLQKVLLLIDRYDL 315 (439)
T ss_pred HhhccccCCcEEEEEcCCcccCCHHHHHHHHHhChhhhh---hccEE-EEeCCccccccccHHHHHHHHHHHHHHHHcCC
Confidence 12356789999999999999999999987532210 03333 35687764321 1234556778889999
Q ss_pred CCcEEEecCCChHHHHHHHHhC----cEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC-
Q psy15555 356 ENNVEFKVNLPYEDMKKEFSEG----LIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC- 430 (488)
Q Consensus 356 ~~~v~~~g~~~~~el~~~~~~a----d~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~- 430 (488)
.++|+|.|.++.+++.++|+.| |+|+.||..|+||++++|||+||+|||+++.+|.. |++.++ .+|++++
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~~-eiv~~~----~~G~lv~~ 390 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGGPR-DIIANC----RNGLLVDV 390 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCCcH-HHhcCC----CcEEEeCC
Confidence 9999999999999999999987 89999999999999999999999999999999986 999888 8999986
Q ss_pred -CHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHH
Q psy15555 431 -DEVEYAQTIKLILHLSQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 431 -~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~ 478 (488)
|+++++++|.++++ |++.+++|++++++.+ ++|||+.+++++.++++
T Consensus 391 ~d~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~~ 439 (439)
T TIGR02472 391 LDLEAIASALEDALS-DSSQWQLWSRNGIEGVRRHYSWDAHVEKYLRILQ 439 (439)
T ss_pred CCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 99999999999999 9999999999999988 89999999999998863
No 16
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=2.4e-35 Score=298.10 Aligned_cols=374 Identities=13% Similarity=0.099 Sum_probs=262.0
Q ss_pred cccc-EEEEeccCCCCCCCceehHHHHHHHHHHhCC------------CeeEEEEeCCC-CCChhHHHHHhhhhcccccC
Q psy15555 50 NVLK-TVAFFHPYCNAGGGGERVLWTAVLALHQKYP------------DYKIYIYTGDV-DASPSEIIKRAHQRFNIVLP 115 (488)
Q Consensus 50 ~~~~-rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~------------~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 115 (488)
.++- ||+++.+.... ||+|+++..|+.++.+.+. ++.|++.+... .+. ........
T Consensus 278 ~~~~~rIl~vi~sl~~-GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~-~~~~~~L~-------- 347 (694)
T PRK15179 278 ESFVGPVLMINGSLGA-GGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGA-DFFAATLA-------- 347 (694)
T ss_pred CCCcceEEEEeCCCCC-CcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCc-chHHHHHH--------
Confidence 3444 99999887764 5699999999999999743 24566653321 111 11111110
Q ss_pred CCeeEEEEeeccceeec----cCchhHHH-----HHHHHHHHHHHHHHhhhcCCcEEEecCCccchhh-hhhhhCCCeeE
Q psy15555 116 DQVINFVYLYRRKFVEA----SLYPYFTL-----LGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP-LFSYIGGSKVA 185 (488)
Q Consensus 116 ~~~v~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~-~~~~~~~~~~v 185 (488)
..|+++..+........ .....+.. ....+...+.+.+++++.+|||||.+...+..+. ++....++|++
T Consensus 348 ~~Gv~v~~l~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~h~~~a~~lg~lAa~~~gvPvI 427 (694)
T PRK15179 348 DAGIPVSVYSDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVHIWQDGSIFACALAALLAGVPRI 427 (694)
T ss_pred hCCCeEEEeccCCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHHcCCCEE
Confidence 11144544433321100 00111110 1123344566778899999999998765554433 33335678876
Q ss_pred EEE-eCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccC-
Q psy15555 186 CYI-HYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQ- 263 (488)
Q Consensus 186 ~~~-h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~- 263 (488)
+.. |... ........+..+...+..+ .....+.++++|+..++.+.+.++.+
T Consensus 428 v~t~h~~~-----------------------~~~~~~~~~~~~~~l~~~l---~~~~~~i~Vs~S~~~~~~l~~~~g~~~ 481 (694)
T PRK15179 428 VLSVRTMP-----------------------PVDRPDRYRVEYDIIYSEL---LKMRGVALSSNSQFAAHRYADWLGVDE 481 (694)
T ss_pred EEEeCCCc-----------------------cccchhHHHHHHHHHHHHH---HhcCCeEEEeCcHHHHHHHHHHcCCCh
Confidence 633 4210 0000001111111111111 11245677888888888887765554
Q ss_pred CceEEEcCCCCchhhhccC----------CCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEec
Q psy15555 264 LKTYKLYPPCDTEDLKKIT----------HSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGS 333 (488)
Q Consensus 264 ~k~~vi~~~~d~~~~~~~~----------~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~ 333 (488)
+++.+||||+|...+.+.. .....+.++++++||+.+.||++.+++|++++.++. |+++|+|+|+
T Consensus 482 ~kI~VI~NGVd~~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~-----p~~~LvIvG~ 556 (694)
T PRK15179 482 RRIPVVYNGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAASH-----PKVRFIMVGG 556 (694)
T ss_pred hHEEEECCCcCHHhcCCCchhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHHHC-----cCeEEEEEcc
Confidence 5899999999987664321 111234678999999999999999999999998887 8999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCcc
Q psy15555 334 TRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKM 413 (488)
Q Consensus 334 ~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~ 413 (488)
|+.. ++++++++++++.++|.|.|+. +++..+|+.||++++||..|+||++++|||++|+|||+++.+|..
T Consensus 557 G~~~------~~L~~l~~~lgL~~~V~flG~~--~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG~~- 627 (694)
T PRK15179 557 GPLL------ESVREFAQRLGMGERILFTGLS--RRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGGAG- 627 (694)
T ss_pred Ccch------HHHHHHHHHcCCCCcEEEcCCc--chHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEEECCCChH-
Confidence 8643 7899999999999999999998 689999999999999999999999999999999999999999987
Q ss_pred ceeccCCCccccceecC--C--HHHHHHHHHHHHccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHH
Q psy15555 414 DIVIEDPETCRNGFLAC--D--EVEYAQTIKLILHLSQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 414 eiv~~~~~~~~~g~~~~--~--~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~ 478 (488)
|++.++ .+|++++ | ++++++++.+++. +.....++++++++.+ ++|||+.+++++.++|+
T Consensus 628 EiV~dg----~~GlLv~~~d~~~~~La~aL~~ll~-~l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 628 EAVQEG----VTGLTLPADTVTAPDVAEALARIHD-MCAADPGIARKAADWASARFSLNQMIASTVRCYQ 692 (694)
T ss_pred HHccCC----CCEEEeCCCCCChHHHHHHHHHHHh-ChhccHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 999988 8999986 4 4689999998887 6666678888999988 89999999999999985
No 17
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=9.4e-36 Score=292.02 Aligned_cols=364 Identities=14% Similarity=0.187 Sum_probs=262.3
Q ss_pred cEEEEeccCCCC--CCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeecccee
Q psy15555 53 KTVAFFHPYCNA--GGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFV 130 (488)
Q Consensus 53 ~rI~~~~~~~~~--~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 130 (488)
|||++++..+.+ .||.++.+.+++++|.++ ++++|+++.... . . ... +.+..++.....
T Consensus 1 mkI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~-------~-~---------~~~-~~~~~~~~~~~~ 61 (388)
T TIGR02149 1 MKVTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFGDQR-------F-D---------SEG-LTVKGYRPWSEL 61 (388)
T ss_pred CeeEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCCCch-------h-c---------CCC-eEEEEecChhhc
Confidence 799999887764 488999999999999987 578776543221 0 0 012 444333221111
Q ss_pred eccCchhHHHHHHHHHHH-HHHHHHhhhcCCcEEEecCCccchhhhh-hhhCCCeeEEEEeCCccchHHHHHHHhhhhcc
Q psy15555 131 EASLYPYFTLLGQSIGSM-ILGVEALLSFQPDIYIDTMGYAFTYPLF-SYIGGSKVACYIHYPTITKEMLTRVARRVITH 208 (488)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~pDiii~~~~~~~~~~~~-~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~ 208 (488)
.. . ...+... ..+.......+||++|.+..++.....+ +...++|++...|........
T Consensus 62 ~~-----~---~~~~~~~~~~~~~~~~~~~~divh~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~----------- 122 (388)
T TIGR02149 62 KE-----A---NKALGTFSVDLAMANDPVDADVVHSHTWYTFLAGHLAKKLYDKPLVVTAHSLEPLRPW----------- 122 (388)
T ss_pred cc-----h---hhhhhhhhHHHHHhhCCCCCCeEeecchhhhhHHHHHHHhcCCCEEEEeecccccccc-----------
Confidence 00 0 0011111 1111222345799999887555433322 335689999988854210000
Q ss_pred cCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHh-cc-CCceEEEcCCCCchhhhccCC---
Q psy15555 209 NNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLW-NC-QLKTYKLYPPCDTEDLKKITH--- 283 (488)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~-~~-~~k~~vi~~~~d~~~~~~~~~--- 283 (488)
. ...... .+....++++..++.+|.++++|+.+++.+.+.+ +. ..++.+++|++|.+.+.+...
T Consensus 123 ~------~~~~~~-----~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~~~i~vi~ng~~~~~~~~~~~~~~ 191 (388)
T TIGR02149 123 K------EEQLGG-----GYKLSSWAEKTAIEAADRVIAVSGGMREDILKYYPDLDPEKVHVIYNGIDTKEYKPDDGNVV 191 (388)
T ss_pred c------cccccc-----chhHHHHHHHHHHhhCCEEEEccHHHHHHHHHHcCCCCcceEEEecCCCChhhcCCCchHHH
Confidence 0 000000 1123445667788999999999999999998876 32 357899999999876654321
Q ss_pred ----CCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCC-Cc
Q psy15555 284 ----SKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLE-NN 358 (488)
Q Consensus 284 ----~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~-~~ 358 (488)
....++++++|+|++.+.||++.+++|++++. ++++++++|+++.. .+..+++++.+++++.. ++
T Consensus 192 ~~~~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~--------~~~~l~i~g~g~~~--~~~~~~~~~~~~~~~~~~~~ 261 (388)
T TIGR02149 192 LDRYGIDRSRPYILFVGRITRQKGVPHLLDAVHYIP--------KDVQVVLCAGAPDT--PEVAEEVRQAVALLDRNRTG 261 (388)
T ss_pred HHHhCCCCCceEEEEEcccccccCHHHHHHHHHHHh--------hcCcEEEEeCCCCc--HHHHHHHHHHHHHhccccCc
Confidence 12345679999999999999999999999885 46788998887643 24557777777776652 34
Q ss_pred EEEe-cCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CH---
Q psy15555 359 VEFK-VNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DE--- 432 (488)
Q Consensus 359 v~~~-g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~--- 432 (488)
+.+. |.++.+++..+|+.||+++.||..|++|++++|||++|+|||+++.++.. |+++++ .+|++++ |.
T Consensus 262 v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~~~-e~i~~~----~~G~~~~~~~~~~~ 336 (388)
T TIGR02149 262 IIWINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATGGIP-EVVVDG----ETGFLVPPDNSDAD 336 (388)
T ss_pred eEEecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCCCHH-HHhhCC----CceEEcCCCCCccc
Confidence 6665 67899999999999999999999999999999999999999999999986 999887 8899986 66
Q ss_pred ---HHHHHHHHHHHccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHhh
Q psy15555 433 ---VEYAQTIKLILHLSQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQPLF 481 (488)
Q Consensus 433 ---~~l~~~i~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~~~~ 481 (488)
++++++|.++++ |++.+++|++++++.+ ++|||+.+++++.++|++++
T Consensus 337 ~~~~~l~~~i~~l~~-~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~y~~~~ 388 (388)
T TIGR02149 337 GFQAELAKAINILLA-DPELAKKMGIAGRKRAEEEFSWGSIAKKTVEMYRKVL 388 (388)
T ss_pred chHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Confidence 899999999999 9999999999999988 89999999999999998764
No 18
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=3.4e-35 Score=285.01 Aligned_cols=227 Identities=19% Similarity=0.239 Sum_probs=193.5
Q ss_pred cccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCC-------CCCCCCeEEEEeeccCCCCChHHHHHHHH
Q psy15555 240 KYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITH-------SKTDGPVKIISVAQFRPEKDHPLQLRAMY 312 (488)
Q Consensus 240 ~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~-------~~~~~~~~i~~~g~~~~~k~~~~ll~a~~ 312 (488)
..++.++++|+..++.+.+.++ ..++.++|||+|.+.+.+... ....++.+++|+|++.+.||++.+++|++
T Consensus 138 ~~~~~ii~~S~~~~~~~~~~~~-~~~i~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~il~~Grl~~~Kg~~~Li~A~~ 216 (380)
T PRK15484 138 DKNAKIIVPSQFLKKFYEERLP-NADISIVPNGFCLETYQSNPQPNLRQQLNISPDETVLLYAGRISPDKGILLLMQAFE 216 (380)
T ss_pred ccCCEEEEcCHHHHHHHHhhCC-CCCEEEecCCCCHHHcCCcchHHHHHHhCCCCCCeEEEEeccCccccCHHHHHHHHH
Confidence 4579999999999999988554 457999999999876654221 12235688999999999999999999999
Q ss_pred HhHHhhhhhccCceEEEEEecCCCCC---cHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCC-CCc
Q psy15555 313 QLRQIISEELWDNLKLIFIGSTRNEE---DEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMW-NEH 388 (488)
Q Consensus 313 ~l~~~~~~~~~~~~~l~ivG~~~~~~---~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~-~e~ 388 (488)
.+.++. |+++|+|+|+++... ..++.+++++++++++ +++.+.|.++.+++..+|+.||+++.||. .|+
T Consensus 217 ~l~~~~-----p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~--~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~ 289 (380)
T PRK15484 217 KLATAH-----SNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG--DRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEA 289 (380)
T ss_pred HHHHhC-----CCeEEEEEeCCccccccchhHHHHHHHHHHHhcC--CcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccc
Confidence 998887 899999999886432 2345567777777765 57999999999999999999999999996 599
Q ss_pred CCccHHHHHHcCCcEEEeCCCCCccceeccCCCcccccee-cC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-hhc
Q psy15555 389 FGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFL-AC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSV-DRF 464 (488)
Q Consensus 389 ~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~-~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~-~~~ 464 (488)
||++++|||+||+|||+++.+|.. |++.++ .+|++ ++ |+++++++|.++++ |++. .++++++++.+ ++|
T Consensus 290 f~~~~lEAma~G~PVI~s~~gg~~-Eiv~~~----~~G~~l~~~~d~~~la~~I~~ll~-d~~~-~~~~~~ar~~~~~~f 362 (380)
T PRK15484 290 FCMVAVEAMAAGKPVLASTKGGIT-EFVLEG----ITGYHLAEPMTSDSIISDINRTLA-DPEL-TQIAEQAKDFVFSKY 362 (380)
T ss_pred cccHHHHHHHcCCCEEEeCCCCcH-hhcccC----CceEEEeCCCCHHHHHHHHHHHHc-CHHH-HHHHHHHHHHHHHhC
Confidence 999999999999999999999987 999888 88984 43 99999999999999 8875 78999999888 999
Q ss_pred CHHHHHHHHHHHHHHhh
Q psy15555 465 SMEEFKNGFLTFTQPLF 481 (488)
Q Consensus 465 s~~~~~~~~~~~~~~~~ 481 (488)
||+.+++++.++|++.+
T Consensus 363 sw~~~a~~~~~~l~~~~ 379 (380)
T PRK15484 363 SWEGVTQRFEEQIHNWF 379 (380)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999998764
No 19
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=100.00 E-value=2e-35 Score=287.55 Aligned_cols=283 Identities=19% Similarity=0.280 Sum_probs=228.4
Q ss_pred HHHHhhhcCCcEEEecCCccchhh-hhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHH
Q psy15555 151 GVEALLSFQPDIYIDTMGYAFTYP-LFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYK 229 (488)
Q Consensus 151 ~~~~l~~~~pDiii~~~~~~~~~~-~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (488)
..+++++.+||+||.+........ .+....++|++.+.|........ ....... ++
T Consensus 74 ~~~~~~~~~~dvvh~~~~~~~~~~~~~~~~~~~p~i~~~h~~~~~~~~--------------------~~~~~~~---~~ 130 (367)
T cd05844 74 LRRLLRRHRPDLVHAHFGFDGVYALPLARRLGVPLVVTFHGFDATTSL--------------------ALLLRSR---WA 130 (367)
T ss_pred HHHHHHhhCCCEEEeccCchHHHHHHHHHHcCCCEEEEEeCccccccc--------------------hhhcccc---hh
Confidence 444678899999998754332222 12235689999988854321100 0000000 23
Q ss_pred HHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCCCCCCCeEEEEeeccCCCCChHHHHH
Q psy15555 230 VFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLR 309 (488)
Q Consensus 230 ~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll~ 309 (488)
.+...++.+++.+|.++++|+.+++.+.+.+..+.++.+++|++|.+.+.+.. ...++.+++++|++.+.||.+.+++
T Consensus 131 ~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~i~vi~~g~d~~~~~~~~--~~~~~~~i~~~G~~~~~K~~~~li~ 208 (367)
T cd05844 131 LYARRRRRLARRAALFIAVSQFIRDRLLALGFPPEKVHVHPIGVDTAKFTPAT--PARRPPRILFVGRFVEKKGPLLLLE 208 (367)
T ss_pred HHHHHHHHHHHhcCEEEECCHHHHHHHHHcCCCHHHeEEecCCCCHHhcCCCC--CCCCCcEEEEEEeeccccChHHHHH
Confidence 33445666778999999999999999998644445899999999987765432 2245678999999999999999999
Q ss_pred HHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCC----
Q psy15555 310 AMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMW---- 385 (488)
Q Consensus 310 a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~---- 385 (488)
|++.+.++. ++++|+++|+++. .+++++.++++++.++|.+.|.++.+++..+|+.||+++.||.
T Consensus 209 a~~~l~~~~-----~~~~l~ivG~g~~------~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~ 277 (367)
T cd05844 209 AFARLARRV-----PEVRLVIIGDGPL------LAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPS 277 (367)
T ss_pred HHHHHHHhC-----CCeEEEEEeCchH------HHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCC
Confidence 999998877 8999999998852 3778899999888899999999999999999999999999995
Q ss_pred --CCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q psy15555 386 --NEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSV 461 (488)
Q Consensus 386 --~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~ 461 (488)
.|++|++++|||++|+|||+++.++.. |++.++ ++|++++ |+++++++|.++++ +++.+.+++.++++.+
T Consensus 278 ~~~E~~~~~~~EA~a~G~PvI~s~~~~~~-e~i~~~----~~g~~~~~~d~~~l~~~i~~l~~-~~~~~~~~~~~a~~~~ 351 (367)
T cd05844 278 GDAEGLPVVLLEAQASGVPVVATRHGGIP-EAVEDG----ETGLLVPEGDVAALAAALGRLLA-DPDLRARMGAAGRRRV 351 (367)
T ss_pred CCccCCchHHHHHHHcCCCEEEeCCCCch-hheecC----CeeEEECCCCHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence 589999999999999999999999986 888887 7899986 89999999999999 9999999999999998
Q ss_pred -hhcCHHHHHHHHHH
Q psy15555 462 -DRFSMEEFKNGFLT 475 (488)
Q Consensus 462 -~~~s~~~~~~~~~~ 475 (488)
++|||+..++++.+
T Consensus 352 ~~~~s~~~~~~~l~~ 366 (367)
T cd05844 352 EERFDLRRQTAKLEA 366 (367)
T ss_pred HHHCCHHHHHHHHhc
Confidence 89999999999875
No 20
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=9.5e-35 Score=298.49 Aligned_cols=407 Identities=16% Similarity=0.159 Sum_probs=275.0
Q ss_pred cccEEEEeccC-------C-----CCCCCceehHHHHHHHHHHhCCC-eeEEEEeCCCCCCh--------hHHHHHh-hh
Q psy15555 51 VLKTVAFFHPY-------C-----NAGGGGERVLWTAVLALHQKYPD-YKIYIYTGDVDASP--------SEIIKRA-HQ 108 (488)
Q Consensus 51 ~~~rI~~~~~~-------~-----~~~gG~e~~~~~l~~~L~~~~~~-~~v~~~~~~~~~~~--------~~~~~~~-~~ 108 (488)
++|.|++++.. . ...||...++..|+++|.+++ + ++|.++|....... .+..... ..
T Consensus 168 ~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~-gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~ 246 (1050)
T TIGR02468 168 KKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMP-GVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSE 246 (1050)
T ss_pred CceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCC-CCCEEEEEeCCcCccccccccCCccccccccccc
Confidence 46788886521 1 134567789999999999984 3 37777777543210 0000000 00
Q ss_pred hc--ccccCCCeeEEEEeeccc---eeec-cCchhHHHHHHHHHHHH-HHHHHh-h------hcCCcEEEecCCccchhh
Q psy15555 109 RF--NIVLPDQVINFVYLYRRK---FVEA-SLYPYFTLLGQSIGSMI-LGVEAL-L------SFQPDIYIDTMGYAFTYP 174 (488)
Q Consensus 109 ~~--~~~~~~~~v~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~-~~~~~l-~------~~~pDiii~~~~~~~~~~ 174 (488)
-+ ......+ +.+++++... ++.+ .+|+++.-+...+.... ...+.+ . ...||+||.+........
T Consensus 247 ~~~~~~~~~~g-~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa 325 (1050)
T TIGR02468 247 NDGDEMGESSG-AYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSA 325 (1050)
T ss_pred cccccccCCCC-eEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHH
Confidence 00 0011123 6777666532 2232 23555444333322110 000111 1 124999998853322222
Q ss_pred -hhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccc--hhhhHHHH-HHHHHHHHHHhcccCEEEEcCh
Q psy15555 175 -LFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPIL--TSFKLFYY-KVFALLYSHVGKYSDIIMVNSS 250 (488)
Q Consensus 175 -~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~d~ii~~s~ 250 (488)
.++...++|++.+.|.-.. .+.... ...+.. ......|. ......++.++..||.||+.|+
T Consensus 326 ~~L~~~lgVP~V~T~HSLgr-------~K~~~l--------l~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VIasT~ 390 (1050)
T TIGR02468 326 ALLSGALNVPMVLTGHSLGR-------DKLEQL--------LKQGRMSKEEINSTYKIMRRIEAEELSLDASEIVITSTR 390 (1050)
T ss_pred HHHHHhhCCCEEEECccchh-------hhhhhh--------cccccccccccccccchHHHHHHHHHHHHhcCEEEEeCH
Confidence 3333568999999995310 000000 000000 00000010 1111256788999999999999
Q ss_pred hHHHHHHHHhcc-----------------------CCceEEEcCCCCchhhhccCCC-----------------------
Q psy15555 251 WTEEHVIQLWNC-----------------------QLKTYKLYPPCDTEDLKKITHS----------------------- 284 (488)
Q Consensus 251 ~~~~~~~~~~~~-----------------------~~k~~vi~~~~d~~~~~~~~~~----------------------- 284 (488)
..++....+|.. ..++.|||||+|.+.|.+....
T Consensus 391 qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l 470 (1050)
T TIGR02468 391 QEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEI 470 (1050)
T ss_pred HHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchhhHHH
Confidence 999876666531 2388999999999988764210
Q ss_pred ----CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCC-----cHHHHHHHHHHHHhcCC
Q psy15555 285 ----KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEE-----DEVCVKDMQDLCKHLSL 355 (488)
Q Consensus 285 ----~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~-----~~~~~~~l~~~~~~~~l 355 (488)
..+++++|+++||+.++||++.+++|+..+.+... .+++. +|+|.++..+ ..+...+++++++++++
T Consensus 471 ~r~~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~---~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL 546 (1050)
T TIGR02468 471 MRFFTNPRKPMILALARPDPKKNITTLVKAFGECRPLRE---LANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDL 546 (1050)
T ss_pred HhhcccCCCcEEEEEcCCccccCHHHHHHHHHHhHhhcc---CCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCC
Confidence 12456789999999999999999999999875320 03565 4668765321 12345778899999999
Q ss_pred CCcEEEecCCChHHHHHHHHhC----cEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC-
Q psy15555 356 ENNVEFKVNLPYEDMKKEFSEG----LIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC- 430 (488)
Q Consensus 356 ~~~v~~~g~~~~~el~~~~~~a----d~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~- 430 (488)
.++|.|.|+++.+++..+|+.| |+||+||..|+||++++||||||+|||+++.+|.. |++.++ .+|++++
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG~~-EII~~g----~nGlLVdP 621 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPV-DIHRVL----DNGLLVDP 621 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCCcH-HHhccC----CcEEEECC
Confidence 9999999999999999999988 69999999999999999999999999999999997 999888 8999987
Q ss_pred -CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhh
Q psy15555 431 -DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLFKVM 484 (488)
Q Consensus 431 -~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~~~ 484 (488)
|+++++++|.++++ |++.+++|++++++.+++|||+.+++++++.+..+....
T Consensus 622 ~D~eaLA~AL~~LL~-Dpelr~~m~~~gr~~v~~FSWe~ia~~yl~~i~~~~~~~ 675 (1050)
T TIGR02468 622 HDQQAIADALLKLVA-DKQLWAECRQNGLKNIHLFSWPEHCKTYLSRIASCRPRH 675 (1050)
T ss_pred CCHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccC
Confidence 99999999999999 999999999999999988999999999999999876544
No 21
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=1.1e-35 Score=287.44 Aligned_cols=348 Identities=15% Similarity=0.181 Sum_probs=249.1
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
|||+++.+.....||+|+++.+++++|.++++++++++++.+..... ...+..... ... .. +. +.....
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~-~~~~~~~~~--~~~-~~-~~---~~~~~~--- 69 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDK-AWLKEIKYA--QSF-SN-IK---LSFLRR--- 69 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCCh-HHHHhcchh--ccc-cc-ch---hhhhcc---
Confidence 89999988777778999999999999999977899888887643221 111111000 000 00 00 000000
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhh-hhhhhCCCe--eEEEEeCCccchHHHHHHHhhhhccc
Q psy15555 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP-LFSYIGGSK--VACYIHYPTITKEMLTRVARRVITHN 209 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~-~~~~~~~~~--~v~~~h~p~~~~d~~~~~~~~~~~~~ 209 (488)
......+.+.+++.+||+||++...+..+. .++...+.| ++.+.|....
T Consensus 70 ------------~~~~~~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~---------------- 121 (359)
T PRK09922 70 ------------AKHVYNFSKWLKETQPDIVICIDVISCLYANKARKKSGKQFKIFSWPHFSLD---------------- 121 (359)
T ss_pred ------------cHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHHHHhCCCCeEEEEecCccc----------------
Confidence 011234557888999999998864443322 222233443 4444442210
Q ss_pred CccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCCCCCCC
Q psy15555 210 NSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGP 289 (488)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~~~~~~ 289 (488)
+ .. .+. . ..+..+|.++++|+..++.+.+.+..+.++.+++|++|.+.+..... ...++
T Consensus 122 -------~---~~----~~~----~--~~~~~~d~~i~~S~~~~~~~~~~~~~~~ki~vi~N~id~~~~~~~~~-~~~~~ 180 (359)
T PRK09922 122 -------H---KK----HAE----C--KKITCADYHLAISSGIKEQMMARGISAQRISVIYNPVEIKTIIIPPP-ERDKP 180 (359)
T ss_pred -------c---cc----hhh----h--hhhhcCCEEEEcCHHHHHHHHHcCCCHHHEEEEcCCCCHHHccCCCc-ccCCC
Confidence 0 00 000 0 01267899999999999999885444458999999999655432211 22356
Q ss_pred eEEEEeeccC--CCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCC-
Q psy15555 290 VKIISVAQFR--PEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLP- 366 (488)
Q Consensus 290 ~~i~~~g~~~--~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~- 366 (488)
++++++||+. +.||++.+++|+.++. ++++++++|.|++. +++++.+++++++++|.|+|+++
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~--------~~~~l~ivG~g~~~------~~l~~~~~~~~l~~~v~f~G~~~~ 246 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTT--------GEWQLHIIGDGSDF------EKCKAYSRELGIEQRIIWHGWQSQ 246 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhC--------CCeEEEEEeCCccH------HHHHHHHHHcCCCCeEEEecccCC
Confidence 8899999986 4699999999998773 57899999999743 78899999999999999999874
Q ss_pred -hHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeC-CCCCccceeccCCCccccceecC--CHHHHHHHHHHH
Q psy15555 367 -YEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHK-SGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLI 442 (488)
Q Consensus 367 -~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~-~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~l 442 (488)
.+++.++|+.||++++||..|+||++++||||||+|||+++ .+|.. |++.++ .+|++++ |+++++++|.++
T Consensus 247 ~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~~-eiv~~~----~~G~lv~~~d~~~la~~i~~l 321 (359)
T PRK09922 247 PWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSGPR-DIIKPG----LNGELYTPGNIDEFVGKLNKV 321 (359)
T ss_pred cHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCChH-HHccCC----CceEEECCCCHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999 78875 999888 8999875 999999999999
Q ss_pred HccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhh
Q psy15555 443 LHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLFK 482 (488)
Q Consensus 443 l~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~ 482 (488)
++ +++.+. .....+.+.+|+.+.+.+++.+.++.+++
T Consensus 322 ~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (359)
T PRK09922 322 IS-GEVKYQ--HDAIPNSIERFYEVLYFKNLNNALFSKLQ 358 (359)
T ss_pred Hh-CcccCC--HHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 99 887541 12222334889999999999999988765
No 22
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=8.5e-35 Score=286.37 Aligned_cols=364 Identities=18% Similarity=0.237 Sum_probs=258.8
Q ss_pred CCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeeccCchhHHHHHH
Q psy15555 64 AGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEASLYPYFTLLGQ 143 (488)
Q Consensus 64 ~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 143 (488)
..||.++++.+++++|.++|++ |.+++.......... ...... +.+..++............+...
T Consensus 19 ~~GG~~~~~~~l~~~L~~~g~~--V~v~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-- 84 (398)
T cd03800 19 DTGGQNVYVLELARALARLGHE--VDIFTRRIDDALPPI---------VELAPG-VRVVRVPAGPAEYLPKEELWPYL-- 84 (398)
T ss_pred CCCceeehHHHHHHHHhccCce--EEEEEecCCcccCCc---------cccccc-eEEEecccccccCCChhhcchhH--
Confidence 4678999999999999998544 444444322111100 011122 44444433211100000001111
Q ss_pred HHHHHHHHHHHhhhc--CCcEEEecCCccchh-hhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccc
Q psy15555 144 SIGSMILGVEALLSF--QPDIYIDTMGYAFTY-PLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPIL 220 (488)
Q Consensus 144 ~~~~~~~~~~~l~~~--~pDiii~~~~~~~~~-~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 220 (488)
......+.+.++.. +||+||.+....... ..++...++|++...|...... .....
T Consensus 85 -~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~--------------------~~~~~ 143 (398)
T cd03800 85 -DEFADDLLRFLRREGGRPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLGAVK--------------------RRHLG 143 (398)
T ss_pred -HHHHHHHHHHHHhcCCCccEEEEecCccchHHHHHHhhcCCceEEEeecccccC--------------------Ccccc
Confidence 11112233445555 999998765322222 2233356889888888532100 00000
Q ss_pred hhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCC-ceEEEcCCCCchhhhccCC--------CCCCCCeE
Q psy15555 221 TSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQL-KTYKLYPPCDTEDLKKITH--------SKTDGPVK 291 (488)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~-k~~vi~~~~d~~~~~~~~~--------~~~~~~~~ 291 (488)
.... .........++.+++.+|.++++|+..++.+.+.+..+. ++.+++|++|.+.+.+... ....++++
T Consensus 144 ~~~~-~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (398)
T cd03800 144 AADT-YEPARRIEAEERLLRAADRVIASTPQEAEELYSLYGAYPRRIRVVPPGVDLERFTPYGRAEARRARLLRDPDKPR 222 (398)
T ss_pred cccc-cchhhhhhHHHHHHhhCCEEEEcCHHHHHHHHHHccccccccEEECCCCCccceecccchhhHHHhhccCCCCcE
Confidence 0000 011112234566788999999999999999988776443 5899999999876654332 12346789
Q ss_pred EEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHH
Q psy15555 292 IISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMK 371 (488)
Q Consensus 292 i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~ 371 (488)
++|+||+.+.||++.+++|+..+.++. ++++++++|+++.........+++++++..++.+++.++|+++.+|+.
T Consensus 223 i~~~gr~~~~k~~~~ll~a~~~l~~~~-----~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 297 (398)
T cd03800 223 ILAVGRLDPRKGIDTLIRAYAELPELR-----ERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLP 297 (398)
T ss_pred EEEEcccccccCHHHHHHHHHHHHHhC-----CCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHH
Confidence 999999999999999999999998876 799999999987654334446678888889988999999999999999
Q ss_pred HHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHHHHccCHHH
Q psy15555 372 KEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILHLSQDT 449 (488)
Q Consensus 372 ~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~~~~~~ 449 (488)
.+|+.||++++||..|++|++++|||++|+|||+++.++.. ++++++ ++|++++ |+++++++|.++++ +++.
T Consensus 298 ~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~~~-e~i~~~----~~g~~~~~~~~~~l~~~i~~l~~-~~~~ 371 (398)
T cd03800 298 ALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVGGPR-DIVVDG----VTGLLVDPRDPEALAAALRRLLT-DPAL 371 (398)
T ss_pred HHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCCCHH-HHccCC----CCeEEeCCCCHHHHHHHHHHHHh-CHHH
Confidence 99999999999999999999999999999999999998886 899887 8899986 89999999999999 9999
Q ss_pred HHHHHHHHHHHH-hhcCHHHHHHHHH
Q psy15555 450 KTRISQNAVSSV-DRFSMEEFKNGFL 474 (488)
Q Consensus 450 ~~~~~~~a~~~~-~~~s~~~~~~~~~ 474 (488)
++++++++++.+ ++|||+.+++++.
T Consensus 372 ~~~~~~~a~~~~~~~~s~~~~~~~~~ 397 (398)
T cd03800 372 RRRLSRAGLRRARARYTWERVAARLL 397 (398)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 999999999999 9999999999875
No 23
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=5.5e-34 Score=288.35 Aligned_cols=413 Identities=15% Similarity=0.109 Sum_probs=268.8
Q ss_pred ccccEEEEeccCCC---CCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhh---h----cc-----c--
Q psy15555 50 NVLKTVAFFHPYCN---AGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ---R----FN-----I-- 112 (488)
Q Consensus 50 ~~~~rI~~~~~~~~---~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~----~~-----~-- 112 (488)
..+|||+|+...+. ..||..-++..|.++|+++|+ +|.++++..+............ . ++ .
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~Gh--dV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v 556 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGH--LVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKI 556 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCC--eEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEE
Confidence 45799999875433 467888999999999999954 5545555433221111111000 0 10 0
Q ss_pred --ccCCCeeEEEEeecc----ceeeccCchhHHHHHHHHHHHHHHHHHhhh--cCCcEEEecCCccchh-hhhhh-----
Q psy15555 113 --VLPDQVINFVYLYRR----KFVEASLYPYFTLLGQSIGSMILGVEALLS--FQPDIYIDTMGYAFTY-PLFSY----- 178 (488)
Q Consensus 113 --~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~pDiii~~~~~~~~~-~~~~~----- 178 (488)
....+ +.+..+... .+.....++.-.-..++..+.+++..++.+ ++|||||++......+ |++..
T Consensus 557 ~~~~~~G-V~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~ 635 (977)
T PLN02939 557 WTGTVEG-LPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPK 635 (977)
T ss_pred EEEEECC-eeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHHhhc
Confidence 01122 555555421 111122221111111212222334444443 6899999887555554 33321
Q ss_pred -hCCCeeEEEEeCCccchHHH-HHHHhhhhcccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHH
Q psy15555 179 -IGGSKVACYIHYPTITKEML-TRVARRVITHNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHV 256 (488)
Q Consensus 179 -~~~~~~v~~~h~p~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~ 256 (488)
..++|+++++|.-...-.+. ..+... ..... .+.. .......++..+. +.+..+..+|.|+++|+..++.+
T Consensus 636 ~~~~~ktVfTIHNl~yQG~f~~~~l~~l--GL~~~-~l~~---~d~le~~~~~~iN-~LK~GIv~AD~VtTVSptYA~EI 708 (977)
T PLN02939 636 GFNSARICFTCHNFEYQGTAPASDLASC--GLDVH-QLDR---PDRMQDNAHGRIN-VVKGAIVYSNIVTTVSPTYAQEV 708 (977)
T ss_pred cCCCCcEEEEeCCCcCCCcCCHHHHHHc--CCCHH-HccC---hhhhhhccCCchH-HHHHHHHhCCeeEeeeHHHHHHH
Confidence 24578999999653211000 000000 00000 0000 0000000001111 12233456899999999999998
Q ss_pred HHHhc---------cCCceEEEcCCCCchhhhccCCC--------------------------CC---CCCeEEEEeecc
Q psy15555 257 IQLWN---------CQLKTYKLYPPCDTEDLKKITHS--------------------------KT---DGPVKIISVAQF 298 (488)
Q Consensus 257 ~~~~~---------~~~k~~vi~~~~d~~~~~~~~~~--------------------------~~---~~~~~i~~~g~~ 298 (488)
...++ ...++.+|+||+|.+.+.+.... .+ .+.++++++||+
T Consensus 709 ~te~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL 788 (977)
T PLN02939 709 RSEGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRL 788 (977)
T ss_pred HHHhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecC
Confidence 76332 23488999999999887764320 11 245899999999
Q ss_pred CCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCc
Q psy15555 299 RPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGL 378 (488)
Q Consensus 299 ~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad 378 (488)
.++||++.+++|+..+.+ ++++|+|+|+||.. .+.++++++++++++.++|.|.|..+..+...+|+.||
T Consensus 789 ~~QKGiDlLleA~~~Ll~-------~dvqLVIvGdGp~~---~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaAD 858 (977)
T PLN02939 789 VPQKGVHLIRHAIYKTAE-------LGGQFVLLGSSPVP---HIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASD 858 (977)
T ss_pred CcccChHHHHHHHHHHhh-------cCCEEEEEeCCCcH---HHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCC
Confidence 999999999999988864 47899999999743 45578889999998888999999987777789999999
Q ss_pred EEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCC-----CccccceecC--CHHHHHHHHHHHHc---cCHH
Q psy15555 379 IGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDP-----ETCRNGFLAC--DEVEYAQTIKLILH---LSQD 448 (488)
Q Consensus 379 ~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~-----~~~~~g~~~~--~~~~l~~~i~~ll~---~~~~ 448 (488)
+|++||..|+||++++|||+||+|+|+++.||.. |+|.+.+ .++.+|++++ |+++++++|.+++. .+++
T Consensus 859 IFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~-DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~dpe 937 (977)
T PLN02939 859 MFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLN-DSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKRKPE 937 (977)
T ss_pred EEEECCCccCCcHHHHHHHHCCCCEEEecCCCCc-ceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhccCHH
Confidence 9999999999999999999999999999999997 7776521 1126899976 99999999988753 2789
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhc
Q psy15555 449 TKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLFKVMK 485 (488)
Q Consensus 449 ~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 485 (488)
.+++|++++.. +.|||+.++++|.++|++++....
T Consensus 938 ~~~~L~~~am~--~dFSWe~~A~qYeeLY~~ll~~~~ 972 (977)
T PLN02939 938 VWKQLVQKDMN--IDFSWDSSASQYEELYQRAVARAR 972 (977)
T ss_pred HHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHhhh
Confidence 99999987643 789999999999999999986543
No 24
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=2.4e-34 Score=279.78 Aligned_cols=357 Identities=17% Similarity=0.150 Sum_probs=246.8
Q ss_pred EEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeecc
Q psy15555 54 TVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEAS 133 (488)
Q Consensus 54 rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 133 (488)
||+++.+.. ..||.++++.++++.|.+.++++++++.....+ .-...+...... .. ... .++..
T Consensus 1 ki~~~~~~~-~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~--~~~~~~~~~~~~-----~g-~~~-~~~~~------ 64 (372)
T cd03792 1 KVLHVNSTP-YGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPE--FFNVTKKFHNAL-----QG-ADI-ELSEE------ 64 (372)
T ss_pred CeEEEeCCC-CCCcHHHHHHHHHHHHHHcCCCceEEecCCChh--HHHHHHHhhHhh-----cC-CCC-CCCHH------
Confidence 578877665 567899999999999999976666665433211 101001110000 00 111 01000
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccc
Q psy15555 134 LYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQR 213 (488)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~ 213 (488)
....+..... ....+.+...+||+||.+...+..+..+....++|++.++|......
T Consensus 65 ---~~~~~~~~~~--~~~~~~~~~~~~Dvv~~h~~~~~~~~~~~~~~~~~~i~~~H~~~~~~------------------ 121 (372)
T cd03792 65 ---EKEIYLEWNE--ENAERPLLDLDADVVVIHDPQPLALPLFKKKRGRPWIWRCHIDLSSP------------------ 121 (372)
T ss_pred ---HHHHHHHHHH--HHhccccccCCCCEEEECCCCchhHHHhhhcCCCeEEEEeeeecCCC------------------
Confidence 0000000000 00111344678999997765555544444334889888888643100
Q ss_pred cccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhh-----cc-----C-
Q psy15555 214 VANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLK-----KI-----T- 282 (488)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~-----~~-----~- 282 (488)
. ...++ +.+..++++|.+++.|+.. ... +..+.++ ++||++|..... +. .
T Consensus 122 ------~----~~~~~----~~~~~~~~~d~~i~~~~~~---~~~-~~~~~~~-vipngvd~~~~~~~~~~~~~~~~~~~ 182 (372)
T cd03792 122 ------N----RRVWD----FLQPYIEDYDAAVFHLPEY---VPP-QVPPRKV-IIPPSIDPLSGKNRELSPADIEYILE 182 (372)
T ss_pred ------c----HHHHH----HHHHHHHhCCEEeecHHHh---cCC-CCCCceE-EeCCCCCCCccccCCCCHHHHHHHHH
Confidence 0 11111 2234557789999888332 222 2223344 999999864211 00 0
Q ss_pred -CCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEE
Q psy15555 283 -HSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEF 361 (488)
Q Consensus 283 -~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~ 361 (488)
.....++++++++||+.+.||++.+++|++.+.+.. ++++|+++|+++..+. +..+.++++.+..++.++|.+
T Consensus 183 ~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~-----~~~~l~i~G~g~~~~~-~~~~~~~~~~~~~~~~~~v~~ 256 (372)
T cd03792 183 KYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERV-----PDPQLVLVGSGATDDP-EGWIVYEEVLEYAEGDPDIHV 256 (372)
T ss_pred HhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhC-----CCCEEEEEeCCCCCCc-hhHHHHHHHHHHhCCCCCeEE
Confidence 112356789999999999999999999999998876 7899999999875321 222445555556677788999
Q ss_pred ecCC--ChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHH
Q psy15555 362 KVNL--PYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTI 439 (488)
Q Consensus 362 ~g~~--~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i 439 (488)
.|.. +.+++..+|+.||+++.||..|+||++++|||+||+|||+++.++.. +++.++ .+|+++++.++++++|
T Consensus 257 ~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~~~-~~i~~~----~~g~~~~~~~~~a~~i 331 (372)
T cd03792 257 LTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGGIP-LQIEDG----ETGFLVDTVEEAAVRI 331 (372)
T ss_pred EecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCCch-hhcccC----CceEEeCCcHHHHHHH
Confidence 9886 88999999999999999999999999999999999999999999886 888887 8999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHh
Q psy15555 440 KLILHLSQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQPL 480 (488)
Q Consensus 440 ~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~~~ 480 (488)
.+++. +++.+++|++++++.+ ++|||+.+++++.++|+++
T Consensus 332 ~~ll~-~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~ 372 (372)
T cd03792 332 LYLLR-DPELRRKMGANAREHVRENFLITRHLKDYLYLISKL 372 (372)
T ss_pred HHHHc-CHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhC
Confidence 99999 9999999999999998 8999999999999999863
No 25
>PLN02316 synthase/transferase
Probab=100.00 E-value=4.4e-34 Score=294.56 Aligned_cols=382 Identities=14% Similarity=0.082 Sum_probs=261.3
Q ss_pred cccccEEEEeccCCC---CCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhh--hcc---------ccc
Q psy15555 49 YNVLKTVAFFHPYCN---AGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ--RFN---------IVL 114 (488)
Q Consensus 49 ~~~~~rI~~~~~~~~---~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~---------~~~ 114 (488)
+..+|||++++..+. ..||..-++..|.++|++.| ++|.+++...+............ .+. ...
T Consensus 584 ~~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~G--h~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~ 661 (1036)
T PLN02316 584 KEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLN--HNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWFGK 661 (1036)
T ss_pred CCCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcC--CEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEEEE
Confidence 345799999875444 36788899999999999995 55555555433211100000000 000 000
Q ss_pred CCCeeEEEEeeccc-eee-ccCchhHHHHHHHHHHHHHHHHHhh--hcCCcEEEecCCccchhhhhhh-------hCCCe
Q psy15555 115 PDQVINFVYLYRRK-FVE-ASLYPYFTLLGQSIGSMILGVEALL--SFQPDIYIDTMGYAFTYPLFSY-------IGGSK 183 (488)
Q Consensus 115 ~~~~v~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~l~--~~~pDiii~~~~~~~~~~~~~~-------~~~~~ 183 (488)
..+ +.+..+.... +.. ...+....-..++..+...+..+++ .++|||||++.......+.+.. ..++|
T Consensus 662 ~~G-V~vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talva~llk~~~~~~~~~~~p 740 (1036)
T PLN02316 662 VEG-LSVYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAWLFKDHYAHYGLSKAR 740 (1036)
T ss_pred ECC-cEEEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHHhhhhhccCCCC
Confidence 112 4444444321 111 1112111111122222223333333 3589999998644444443321 23578
Q ss_pred eEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhcc-
Q psy15555 184 VACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNC- 262 (488)
Q Consensus 184 ~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~- 262 (488)
++.++|..... .+ ..+..+..+|.|+++|+..++.+...+..
T Consensus 741 ~V~TiHnl~~~---------------------~n----------------~lk~~l~~AD~ViTVS~tya~EI~~~~~l~ 783 (1036)
T PLN02316 741 VVFTIHNLEFG---------------------AN----------------HIGKAMAYADKATTVSPTYSREVSGNSAIA 783 (1036)
T ss_pred EEEEeCCcccc---------------------hh----------------HHHHHHHHCCEEEeCCHHHHHHHHhccCcc
Confidence 99999953200 00 11235577999999999999998875432
Q ss_pred --CCceEEEcCCCCchhhhccCCC---------------------------CC-CCCeEEEEeeccCCCCChHHHHHHHH
Q psy15555 263 --QLKTYKLYPPCDTEDLKKITHS---------------------------KT-DGPVKIISVAQFRPEKDHPLQLRAMY 312 (488)
Q Consensus 263 --~~k~~vi~~~~d~~~~~~~~~~---------------------------~~-~~~~~i~~~g~~~~~k~~~~ll~a~~ 312 (488)
..|+.+|+||+|.+.+.+.... .+ .+.++++++||+.++||++.+++|+.
T Consensus 784 ~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~ 863 (1036)
T PLN02316 784 PHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIW 863 (1036)
T ss_pred cccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHH
Confidence 2589999999998776543210 11 25689999999999999999999999
Q ss_pred HhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCC--CCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCC
Q psy15555 313 QLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSL--ENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFG 390 (488)
Q Consensus 313 ~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l--~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g 390 (488)
.+.+ .+++|+|+|+||+. .+.++++++++++++ +++|.|.+..+......+|+.||+|++||..|++|
T Consensus 864 ~ll~-------~~~qlVIvG~Gpd~---~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~G 933 (1036)
T PLN02316 864 RTLE-------RNGQVVLLGSAPDP---RIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCG 933 (1036)
T ss_pred HHhh-------cCcEEEEEeCCCCH---HHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCcc
Confidence 9864 47899999999754 455788888988865 56899888764433458999999999999999999
Q ss_pred ccHHHHHHcCCcEEEeCCCCCccceeccCCCc---------cccceecC--CHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy15555 391 IGIVECMAAGLIMIAHKSGGPKMDIVIEDPET---------CRNGFLAC--DEVEYAQTIKLILHLSQDTKTRISQNAVS 459 (488)
Q Consensus 391 ~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~---------~~~g~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~ 459 (488)
++.+|||++|+|+|+++.||.. |+|.+++.. ..+|++++ |+++++.+|.+++...++.+..+++.+++
T Consensus 934 LvqLEAMa~GtppVvs~vGGL~-DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~ 1012 (1036)
T PLN02316 934 LTQLTAMRYGSIPVVRKTGGLF-DTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKR 1012 (1036)
T ss_pred HHHHHHHHcCCCeEEEcCCCcH-hhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 9999999999999999999997 887764110 25899987 89999999999998224667777888888
Q ss_pred HH-hhcCHHHHHHHHHHHHHHhh
Q psy15555 460 SV-DRFSMEEFKNGFLTFTQPLF 481 (488)
Q Consensus 460 ~~-~~~s~~~~~~~~~~~~~~~~ 481 (488)
.+ ++|||+..+++|+++|+.+.
T Consensus 1013 ~m~~dFSW~~~A~~Y~~LY~~a~ 1035 (1036)
T PLN02316 1013 VMEQDWSWNRPALDYMELYHSAR 1035 (1036)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHh
Confidence 87 88999999999999999875
No 26
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=6.3e-34 Score=274.42 Aligned_cols=286 Identities=16% Similarity=0.146 Sum_probs=219.8
Q ss_pred HHHHHHHHhhhcCCcEEEecCCccchhh-hhhhhCCCeeEEE-EeCCccchHHHHHHHhhhhcccCccccccCccchhhh
Q psy15555 147 SMILGVEALLSFQPDIYIDTMGYAFTYP-LFSYIGGSKVACY-IHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFK 224 (488)
Q Consensus 147 ~~~~~~~~l~~~~pDiii~~~~~~~~~~-~~~~~~~~~~v~~-~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (488)
........+++.+|||||.+...++.+. ++++..+.|+++. .|. . .. . ..+
T Consensus 268 ~~~~l~~~ir~~rpDIVHt~~~~a~l~g~laA~lagvpviv~~~h~-~-~~--------------------~-----~~~ 320 (578)
T PRK15490 268 GIKHLVPHLCERKLDYLSVWQDGACLMIALAALIAGVPRIQLGLRG-L-PP--------------------V-----VRK 320 (578)
T ss_pred HHHHHHHHHHHcCCCEEEEcCcccHHHHHHHHHhcCCCEEEEeecc-c-CC--------------------c-----chh
Confidence 3445667889999999998876665443 3344678888654 442 1 00 0 000
Q ss_pred HHHHHHHHHHHH--HHhcccCEEEEcChhHHHHHHHHhccC-CceEEEcCCCCchhhhccCC-----------CCCCCCe
Q psy15555 225 LFYYKVFALLYS--HVGKYSDIIMVNSSWTEEHVIQLWNCQ-LKTYKLYPPCDTEDLKKITH-----------SKTDGPV 290 (488)
Q Consensus 225 ~~~~~~~~~~~~--~~~~~~d~ii~~s~~~~~~~~~~~~~~-~k~~vi~~~~d~~~~~~~~~-----------~~~~~~~ 290 (488)
......+....+ .+...+| +++.|...++.+.+.++.+ +|+.+||||+|.+.+.+... ..+.+.+
T Consensus 321 r~~~~e~~~~~~a~~i~~~sd-~v~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~~ 399 (578)
T PRK15490 321 RLFKPEYEPLYQALAVVPGVD-FMSNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDADT 399 (578)
T ss_pred hHHHHHHHHhhhhceeEecch-hhhccHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCCc
Confidence 111111111111 1234455 7788888889888766544 58999999999876655321 1123557
Q ss_pred EEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHH
Q psy15555 291 KIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDM 370 (488)
Q Consensus 291 ~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el 370 (488)
+++++|++.+.|+...+++++.++.++. |+++|+|+|+|+.. +++++.++++++.++|.|.|+. +++
T Consensus 400 vIg~VgRl~~~Kg~~~LI~A~a~llk~~-----pdirLvIVGdG~~~------eeLk~la~elgL~d~V~FlG~~--~Dv 466 (578)
T PRK15490 400 TIGGVFRFVGDKNPFAWIDFAARYLQHH-----PATRFVLVGDGDLR------AEAQKRAEQLGILERILFVGAS--RDV 466 (578)
T ss_pred EEEEEEEEehhcCHHHHHHHHHHHHhHC-----CCeEEEEEeCchhH------HHHHHHHHHcCCCCcEEECCCh--hhH
Confidence 8999999999999999999999988877 89999999998643 7899999999999999999996 899
Q ss_pred HHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHH---HHHHcc
Q psy15555 371 KKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTI---KLILHL 445 (488)
Q Consensus 371 ~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i---~~ll~~ 445 (488)
..+|+.+|+|++||..|+||++++|||++|+|||+++.+|.. |++.++ .+|++++ |.+++++++ ..+..
T Consensus 467 ~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdvGG~~-EiV~dG----~nG~LVp~~D~~aLa~ai~lA~aL~~- 540 (578)
T PRK15490 467 GYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPAGGSA-ECFIEG----VSGFILDDAQTVNLDQACRYAEKLVN- 540 (578)
T ss_pred HHHHHhCCEEEEcccccCccHHHHHHHHhCCCEEEeCCCCcH-HHcccC----CcEEEECCCChhhHHHHHHHHHHHHH-
Confidence 999999999999999999999999999999999999999997 999888 9999987 677777766 44454
Q ss_pred CHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHH
Q psy15555 446 SQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQP 479 (488)
Q Consensus 446 ~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~~ 479 (488)
..+.+..++++|++.+ ++||++.++++|.++|++
T Consensus 541 ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 541 LWRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 5555667999999999 899999999999999875
No 27
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=100.00 E-value=1.1e-34 Score=281.99 Aligned_cols=353 Identities=16% Similarity=0.129 Sum_probs=257.0
Q ss_pred EEEEeccCCCC--CCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceee
Q psy15555 54 TVAFFHPYCNA--GGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVE 131 (488)
Q Consensus 54 rI~~~~~~~~~--~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 131 (488)
||+++..++.. .||+++++..++++|.+.++.+.+++............... ... ......
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~-------------~~~----~~~~~~ 63 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAA-------------LRL----LLRLPR 63 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhc-------------ccc----cccccc
Confidence 57887777665 78999999999999999876666665554432211100000 000 000000
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCc
Q psy15555 132 ASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNS 211 (488)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~ 211 (488)
...... .....+.........+||++|.+....... ...++|++..+|......
T Consensus 64 ~~~~~~------~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~----~~~~~~~i~~~hd~~~~~---------------- 117 (365)
T cd03809 64 RLLWGL------LFLLRAGDRLLLLLLGLDLLHSPHNTAPLL----RLRGVPVVVTIHDLIPLR---------------- 117 (365)
T ss_pred ccccch------hhHHHHHHHHHhhhcCCCeeeecccccCcc----cCCCCCEEEEeccchhhh----------------
Confidence 000010 011112233344557899999776444433 367889999998542100
Q ss_pred cccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhcc-CCceEEEcCCCCchhhhccCC------C
Q psy15555 212 QRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNC-QLKTYKLYPPCDTEDLKKITH------S 284 (488)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~-~~k~~vi~~~~d~~~~~~~~~------~ 284 (488)
. ...........+...++.+++.+|.++++|+.+++.+.+.++. +.++.+++|++|...+..... .
T Consensus 118 ----~---~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 190 (365)
T cd03809 118 ----F---PEYFSPGFRRYFRRLLRRALRRADAIITVSEATKRDLLRYLGVPPDKIVVIPLGVDPRFRPPPAEAEVLRAL 190 (365)
T ss_pred ----C---cccCCHHHHHHHHHHHHHHHHHcCEEEEccHHHHHHHHHHhCcCHHHEEeeccccCccccCCCchHHHHHHh
Confidence 0 0001111234445567778899999999999999999998763 358999999999877654321 2
Q ss_pred CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC
Q psy15555 285 KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN 364 (488)
Q Consensus 285 ~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 364 (488)
...++++++++|++.+.||++.+++++..+.+.. ++++++++|.++... ....+..++.+..++|++.|.
T Consensus 191 ~~~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~-----~~~~l~i~G~~~~~~-----~~~~~~~~~~~~~~~v~~~g~ 260 (365)
T cd03809 191 YLLPRPYFLYVGTIEPRKNLERLLEAFARLPAKG-----PDPKLVIVGKRGWLN-----EELLARLRELGLGDRVRFLGY 260 (365)
T ss_pred cCCCCCeEEEeCCCccccCHHHHHHHHHHHHHhc-----CCCCEEEecCCcccc-----HHHHHHHHHcCCCCeEEECCC
Confidence 3356789999999999999999999999999876 689999999876432 333333366778899999999
Q ss_pred CChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHHH
Q psy15555 365 LPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLI 442 (488)
Q Consensus 365 ~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~l 442 (488)
++.+|+..+|+.||+++.||..|++|++++|||++|+|||+++.++.. |++.++ |++++ |.++++++|.++
T Consensus 261 ~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~-e~~~~~------~~~~~~~~~~~~~~~i~~l 333 (365)
T cd03809 261 VSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISSLP-EVAGDA------ALYFDPLDPEALAAAIERL 333 (365)
T ss_pred CChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCCcc-ceecCc------eeeeCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998886 887654 55543 899999999999
Q ss_pred HccCHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q psy15555 443 LHLSQDTKTRISQNAVSSVDRFSMEEFKNGFL 474 (488)
Q Consensus 443 l~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~ 474 (488)
++ |++.+.++++++++.+++|||+.+++++.
T Consensus 334 ~~-~~~~~~~~~~~~~~~~~~~sw~~~~~~~~ 364 (365)
T cd03809 334 LE-DPALREELRERGLARAKRFSWEKTARRTL 364 (365)
T ss_pred hc-CHHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 98 99999999999998779999999999875
No 28
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=1.4e-33 Score=284.63 Aligned_cols=394 Identities=17% Similarity=0.166 Sum_probs=256.5
Q ss_pred cccEEEEeccCCC----------CCCCceehHHHHHHHH--------HHhCCCe--eEEEEeCCCCCChh-HHHHHhhhh
Q psy15555 51 VLKTVAFFHPYCN----------AGGGGERVLWTAVLAL--------HQKYPDY--KIYIYTGDVDASPS-EIIKRAHQR 109 (488)
Q Consensus 51 ~~~rI~~~~~~~~----------~~gG~e~~~~~l~~~L--------~~~~~~~--~v~~~~~~~~~~~~-~~~~~~~~~ 109 (488)
..|||++++.... ..||...++.+++++| +++|+++ +|.++|........ .+.+.....
T Consensus 254 ~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~ 333 (784)
T TIGR02470 254 MVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKV 333 (784)
T ss_pred ccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccccccccccccc
Confidence 3489998764331 2567779999999985 5665432 67777775332111 000000000
Q ss_pred cccccCCCeeEEEEeecccee---eccCchhHHHHHHHHHHHHHHHHHhh---hcCCcEEEecCCccchhh-hhhhhCCC
Q psy15555 110 FNIVLPDQVINFVYLYRRKFV---EASLYPYFTLLGQSIGSMILGVEALL---SFQPDIYIDTMGYAFTYP-LFSYIGGS 182 (488)
Q Consensus 110 ~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~pDiii~~~~~~~~~~-~~~~~~~~ 182 (488)
....+ +.++++|....- -+.+.++..++-+.-.+...+.+.+. ..+||+||.+....+... .++...++
T Consensus 334 ---~~~~~-~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~lgV 409 (784)
T TIGR02470 334 ---YGTEH-AWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARKLGV 409 (784)
T ss_pred ---cCCCc-eEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHhcCC
Confidence 11123 666666644321 11112222211111111112222222 247999998864433333 33335689
Q ss_pred eeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHHHHHH--HHHHHhcccCEEEEcChhHHH----HH
Q psy15555 183 KVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFAL--LYSHVGKYSDIIMVNSSWTEE----HV 256 (488)
Q Consensus 183 ~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~ii~~s~~~~~----~~ 256 (488)
|.+...|...... .. ........... .+..... -+..+++.||.||+.|..... ..
T Consensus 410 P~v~t~HsL~~~K-------~~----------~~g~~~~~~e~-~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v 471 (784)
T TIGR02470 410 TQCTIAHALEKTK-------YP----------DSDIYWQEFED-KYHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSV 471 (784)
T ss_pred CEEEECCcchhhc-------cc----------ccccccccchh-HHHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhh
Confidence 9888888432100 00 00000000000 1111111 144678899999999975422 22
Q ss_pred HH-----------Hhc-------cCCceEEEcCCCCchhhhccCCC----------------------------CCCCCe
Q psy15555 257 IQ-----------LWN-------CQLKTYKLYPPCDTEDLKKITHS----------------------------KTDGPV 290 (488)
Q Consensus 257 ~~-----------~~~-------~~~k~~vi~~~~d~~~~~~~~~~----------------------------~~~~~~ 290 (488)
.+ +++ .+.|+.+++||+|...|.+.... ...+++
T Consensus 472 ~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~kp 551 (784)
T TIGR02470 472 GQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNKP 551 (784)
T ss_pred hhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCCCCCc
Confidence 21 111 23588999999998876553210 124668
Q ss_pred EEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCC---Cc---HHHHHHHHHHHHhcCCCCcEEEecC
Q psy15555 291 KIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNE---ED---EVCVKDMQDLCKHLSLENNVEFKVN 364 (488)
Q Consensus 291 ~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~---~~---~~~~~~l~~~~~~~~l~~~v~~~g~ 364 (488)
+++++||+.+.||++.+++|+.++.... ++++|+|+|+++.. .+ .+..+++.++++++++.++|.|+|.
T Consensus 552 iIl~VGRL~~~KGid~LIeA~~~l~~l~-----~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~ 626 (784)
T TIGR02470 552 IIFSMARLDRVKNLTGLVECYGRSPKLR-----ELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGA 626 (784)
T ss_pred EEEEEeCCCccCCHHHHHHHHHHhHhhC-----CCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccC
Confidence 9999999999999999999998876543 57899999987531 11 1255788889999999999999997
Q ss_pred C-ChHHHHHHHH----hCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHH
Q psy15555 365 L-PYEDMKKEFS----EGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQ 437 (488)
Q Consensus 365 ~-~~~el~~~~~----~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~ 437 (488)
. +..++.++|+ .+|+||.||..|+||++++|||+||+|||+++.||+. |++.++ .+|++++ |++++++
T Consensus 627 ~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG~~-EiV~dg----~tGfLVdp~D~eaLA~ 701 (784)
T TIGR02470 627 QLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGGPL-EIIQDG----VSGFHIDPYHGEEAAE 701 (784)
T ss_pred cCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCCHH-HHhcCC----CcEEEeCCCCHHHHHH
Confidence 5 5556666664 3479999999999999999999999999999999997 999988 8999987 8999999
Q ss_pred HHHHHH----ccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHH
Q psy15555 438 TIKLIL----HLSQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFT 477 (488)
Q Consensus 438 ~i~~ll----~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~ 477 (488)
+|.+++ . |++.+++++++|++.+ ++|||+.++++++++.
T Consensus 702 aL~~ll~kll~-dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~ 745 (784)
T TIGR02470 702 KIVDFFEKCDE-DPSYWQKISQGGLQRIYEKYTWKIYSERLLTLA 745 (784)
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999875 5 8999999999999998 9999999999998775
No 29
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=100.00 E-value=4.1e-34 Score=278.03 Aligned_cols=350 Identities=17% Similarity=0.140 Sum_probs=248.8
Q ss_pred EEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeecc
Q psy15555 54 TVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEAS 133 (488)
Q Consensus 54 rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 133 (488)
||+|++++.+..||.++++..++++|.++++++.++........... ... . .. .... .... .
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~--~~~----~-----~~-~~~~-~~~~-~---- 62 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLY--GGE----Q-----EV-VRVI-VLDN-P---- 62 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccC--CCc----c-----cc-eeee-ecCC-c----
Confidence 68999988777889999999999999999666655554433211100 000 0 00 0000 0000 0
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccc----hhhhhh---hhCCCeeEEEEeCCccchHHHHHHHhhhh
Q psy15555 134 LYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAF----TYPLFS---YIGGSKVACYIHYPTITKEMLTRVARRVI 206 (488)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~----~~~~~~---~~~~~~~v~~~h~p~~~~d~~~~~~~~~~ 206 (488)
.......+.++..+||+||.+...+. ....+. ...++|++..+|....
T Consensus 63 ------------~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~------------- 117 (366)
T cd03822 63 ------------LDYRRAARAIRLSGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLL------------- 117 (366)
T ss_pred ------------hhHHHHHHHHhhcCCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCc-------------
Confidence 01123556778889999886542211 111111 1378999999996410
Q ss_pred cccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCC---
Q psy15555 207 THNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITH--- 283 (488)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~--- 283 (488)
.. .. .....+.+..++.+|.++++|....+.+..... +.++.+++|+++...+.....
T Consensus 118 ---------~~--~~-------~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~ 178 (366)
T cd03822 118 ---------HE--PR-------PGDRALLRLLLRRADAVIVMSSELLRALLLRAY-PEKIAVIPHGVPDPPAEPPESLKA 178 (366)
T ss_pred ---------cc--cc-------hhhhHHHHHHHhcCCEEEEeeHHHHHHHHhhcC-CCcEEEeCCCCcCcccCCchhhHh
Confidence 00 00 011223445678899999996333333332222 358999999998766544321
Q ss_pred -CCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEe
Q psy15555 284 -SKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFK 362 (488)
Q Consensus 284 -~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~ 362 (488)
....++++++++|++.+.||++.+++|++.+.++. ++++++++|+++....... ....++++++++.++|+++
T Consensus 179 ~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~-----~~~~l~i~G~~~~~~~~~~-~~~~~~i~~~~~~~~v~~~ 252 (366)
T cd03822 179 LGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKH-----PDVRLLVAGETHPDLERYR-GEAYALAERLGLADRVIFI 252 (366)
T ss_pred hcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhhC-----CCeEEEEeccCccchhhhh-hhhHhHHHhcCCCCcEEEe
Confidence 13346789999999999999999999999999887 8999999998864311110 1111347788888999999
Q ss_pred cC-CChHHHHHHHHhCcEEEEcCCCC--cCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHH
Q psy15555 363 VN-LPYEDMKKEFSEGLIGLHAMWNE--HFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQ 437 (488)
Q Consensus 363 g~-~~~~el~~~~~~ad~~v~~s~~e--~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~ 437 (488)
|. ++.+++..+|+.||+++.||..| ++|.+++|||++|+|||+++.++ . +.+.+. .+|++++ |.+++++
T Consensus 253 ~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~-~~i~~~----~~g~~~~~~d~~~~~~ 326 (366)
T cd03822 253 NRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-A-EEVLDG----GTGLLVPPGDPAALAE 326 (366)
T ss_pred cCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-h-heeeeC----CCcEEEcCCCHHHHHH
Confidence 87 89999999999999999999999 99999999999999999999988 5 555555 6888875 8999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy15555 438 TIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 438 ~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~ 478 (488)
+|.++++ +++.+.++++++++.+++|||+.+++++.++++
T Consensus 327 ~l~~l~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 366 (366)
T cd03822 327 AIRRLLA-DPELAQALRARAREYARAMSWERVAERYLRLLA 366 (366)
T ss_pred HHHHHHc-ChHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhC
Confidence 9999999 999999999999999966999999999998873
No 30
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=3.3e-34 Score=276.07 Aligned_cols=344 Identities=21% Similarity=0.220 Sum_probs=251.3
Q ss_pred EEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeecc
Q psy15555 54 TVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEAS 133 (488)
Q Consensus 54 rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 133 (488)
||+++.+.....||.++.+..++++|.+.+ ++|.+++........ + ..... +.+..++.....
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g--~~v~v~~~~~~~~~~---------~--~~~~~-~~~~~~~~~~~~--- 63 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKG--HEVTIISLDKGEPPF---------Y--ELDPK-IKVIDLGDKRDS--- 63 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCC--CeEEEEecCCCCCCc---------c--ccCCc-cceeeccccccc---
Confidence 688888877767889999999999999874 555555544322000 0 01111 223222221110
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhhhhhCC-CeeEEEEeCCccchHHHHHHHhhhhcccCcc
Q psy15555 134 LYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGG-SKVACYIHYPTITKEMLTRVARRVITHNNSQ 212 (488)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~~~~~~-~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~ 212 (488)
.....+.......+.++..+||+++.+..+...+ ......+ +|++.+.|......
T Consensus 64 ------~~~~~~~~~~~~~~~l~~~~~d~i~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~----------------- 119 (348)
T cd03820 64 ------KLLARFKKLRRLRKLLKNNKPDVVISFLTSLLTF-LASLGLKIVKLIVSEHNSPDAY----------------- 119 (348)
T ss_pred ------chhccccchHHHHHhhcccCCCEEEEcCchHHHH-HHHHhhccccEEEecCCCccch-----------------
Confidence 0000111123466678889999998776542111 1112334 48888888543111
Q ss_pred ccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCCCCCCCeEE
Q psy15555 213 RVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKI 292 (488)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~~~~~~~~i 292 (488)
... .......+..++.+|.+++.|+.++.... .....++.+++|+++...+... ...+++.+
T Consensus 120 ----------~~~---~~~~~~~~~~~~~~d~ii~~s~~~~~~~~--~~~~~~~~vi~~~~~~~~~~~~---~~~~~~~i 181 (348)
T cd03820 120 ----------KKR---LRRLLLRRLLYRRADAVVVLTEEDRALYY--KKFNKNVVVIPNPLPFPPEEPS---SDLKSKRI 181 (348)
T ss_pred ----------hhh---hHHHHHHHHHHhcCCEEEEeCHHHHHHhh--ccCCCCeEEecCCcChhhcccc---CCCCCcEE
Confidence 000 00111456678899999999999983222 3334689999999987765443 23567899
Q ss_pred EEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHH
Q psy15555 293 ISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKK 372 (488)
Q Consensus 293 ~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~ 372 (488)
+++|++.+.||++.++++++.+.+.. ++++++++|.++.. +.+++.+++.++.++|.+.|.. +++..
T Consensus 182 ~~~g~~~~~K~~~~l~~~~~~l~~~~-----~~~~l~i~G~~~~~------~~~~~~~~~~~~~~~v~~~g~~--~~~~~ 248 (348)
T cd03820 182 LAVGRLVPQKGFDLLIEAWAKIAKKH-----PDWKLRIVGDGPER------EALEALIKELGLEDRVILLGFT--KNIEE 248 (348)
T ss_pred EEEEeeccccCHHHHHHHHHHHHhcC-----CCeEEEEEeCCCCH------HHHHHHHHHcCCCCeEEEcCCc--chHHH
Confidence 99999999999999999999998776 89999999998643 6677788888988999999984 89999
Q ss_pred HHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHHHHccCHHHH
Q psy15555 373 EFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILHLSQDTK 450 (488)
Q Consensus 373 ~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~~~~~~~ 450 (488)
+|+.||+++.||..|++|++++|||++|+|||+++.++..++++.++ .+|++++ |+++++++|.++++ |++.+
T Consensus 249 ~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~i~~ll~-~~~~~ 323 (348)
T cd03820 249 YYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSEIIEDG----VNGLLVPNGDVEALAEALLRLME-DEELR 323 (348)
T ss_pred HHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCchHhhhccC----cceEEeCCCCHHHHHHHHHHHHc-CHHHH
Confidence 99999999999999999999999999999999999765545777766 6899886 78999999999999 99999
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHH
Q psy15555 451 TRISQNAVSSVDRFSMEEFKNGFL 474 (488)
Q Consensus 451 ~~~~~~a~~~~~~~s~~~~~~~~~ 474 (488)
+++++++++.+++|+|++++++|.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~ 347 (348)
T cd03820 324 KRMGANARESAERFSIENIIKQWE 347 (348)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHhc
Confidence 999999987779999999999875
No 31
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=1.8e-33 Score=275.97 Aligned_cols=365 Identities=15% Similarity=0.112 Sum_probs=241.5
Q ss_pred ccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceee
Q psy15555 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVE 131 (488)
Q Consensus 52 ~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 131 (488)
++|++++... .+|.+..+..++++|.++||++.++..... ....+... ... +.+..++......
T Consensus 3 ~~~~~~~~~~---~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~--~~~~~~~~----------~~~-v~~~~~~~~~~~~ 66 (415)
T cd03816 3 RKRVCVLVLG---DIGRSPRMQYHALSLAKHGWKVDLVGYLET--PPHDEILS----------NPN-ITIHPLPPPPQRL 66 (415)
T ss_pred ccEEEEEEec---ccCCCHHHHHHHHHHHhcCceEEEEEecCC--CCCHHHhc----------CCC-EEEEECCCCcccc
Confidence 4577766532 345776668899999999655555543322 21111110 122 5555554432000
Q ss_pred ccCchhHHHHHHHHHHH-HHHHHHhhhcCCcEEEecCCccchh---h-hhhhhCCCeeEEEEeCCccchHHHHHHHhhhh
Q psy15555 132 ASLYPYFTLLGQSIGSM-ILGVEALLSFQPDIYIDTMGYAFTY---P-LFSYIGGSKVACYIHYPTITKEMLTRVARRVI 206 (488)
Q Consensus 132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~pDiii~~~~~~~~~---~-~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~ 206 (488)
......+......+... ...+..++..+||+||.+...+... . +++...+.|+++..|.... ... .
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~-----~~~-~--- 137 (415)
T cd03816 67 NKLPFLLFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGY-----TIL-A--- 137 (415)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchH-----HHH-h---
Confidence 01111111111111111 2222345567899998765333211 1 2233568899998884310 000 0
Q ss_pred cccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCC---
Q psy15555 207 THNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITH--- 283 (488)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~--- 283 (488)
.. .. ......+...++++.+.+.+|.++++|+.+++.+.+.+..++++.+++|+. ...+.+...
T Consensus 138 ---------~~--~~-~~~~~~~~~~~~e~~~~~~ad~ii~vS~~~~~~l~~~~~~~~ki~vI~Ng~-~~~f~p~~~~~~ 204 (415)
T cd03816 138 ---------LK--LG-ENHPLVRLAKWYEKLFGRLADYNLCVTKAMKEDLQQFNNWKIRATVLYDRP-PEQFRPLPLEEK 204 (415)
T ss_pred ---------cc--cC-CCCHHHHHHHHHHHHHhhcCCEeeecCHHHHHHHHhhhccCCCeeecCCCC-HHHceeCcHHHH
Confidence 00 00 011123455667778889999999999999999988444456899999983 333332110
Q ss_pred ----------------------CCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhh-hccCceEEEEEecCCCCCcH
Q psy15555 284 ----------------------SKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISE-ELWDNLKLIFIGSTRNEEDE 340 (488)
Q Consensus 284 ----------------------~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~-~~~~~~~l~ivG~~~~~~~~ 340 (488)
...++..+++++|++.+.||++.+++|++.+.+...+ ...|+++|+|+|+|+..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~--- 281 (415)
T cd03816 205 HELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPLK--- 281 (415)
T ss_pred HHHHHhccccccccccccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCccH---
Confidence 0123456788899999999999999999999753100 00157999999999743
Q ss_pred HHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcC---CCCcCCccHHHHHHcCCcEEEeCCCCCccceec
Q psy15555 341 VCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAM---WNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVI 417 (488)
Q Consensus 341 ~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s---~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~ 417 (488)
++++++++++++.+.+.+.|+++.+++..+|+.||+++.++ ..+++|++++||||||+|||+++.++.. |+++
T Consensus 282 ---~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~-eiv~ 357 (415)
T cd03816 282 ---EKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCID-ELVK 357 (415)
T ss_pred ---HHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHH-HHhc
Confidence 88999999999875444557899999999999999988643 3477999999999999999999999886 9999
Q ss_pred cCCCccccceecCCHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHhhcCHH
Q psy15555 418 EDPETCRNGFLACDEVEYAQTIKLILHLS---QDTKTRISQNAVSSVDRFSME 467 (488)
Q Consensus 418 ~~~~~~~~g~~~~~~~~l~~~i~~ll~~~---~~~~~~~~~~a~~~~~~~s~~ 467 (488)
++ .+|++++|+++++++|.++++ | ++.+++|++++++.. +++|+
T Consensus 358 ~~----~~G~lv~d~~~la~~i~~ll~-~~~~~~~~~~m~~~~~~~~-~~~~~ 404 (415)
T cd03816 358 HG----ENGLVFGDSEELAEQLIDLLS-NFPNRGKLNSLKKGAQEES-ELRWD 404 (415)
T ss_pred CC----CCEEEECCHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhh-hcCHH
Confidence 88 899999999999999999999 7 899999999998766 33344
No 32
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1e-33 Score=275.17 Aligned_cols=352 Identities=11% Similarity=0.078 Sum_probs=243.1
Q ss_pred EEEEecc--CCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceee
Q psy15555 54 TVAFFHP--YCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVE 131 (488)
Q Consensus 54 rI~~~~~--~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 131 (488)
||+++.. .....||.++++.+++++|.++|+++.| .+........ . ....+ +.+..++....
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v--~~~~~~~~~~---~--------~~~~~-i~~~~~~~~~~-- 64 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTV--YCRSPYPKQK---E--------TEYNG-VRLIHIPAPEI-- 64 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEE--EEccCCCCCc---c--------cccCC-ceEEEcCCCCc--
Confidence 5788754 3456789999999999999999655554 4443222111 0 00022 55555544321
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHh-hhcCCcEEEecCCcc-chhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhccc
Q psy15555 132 ASLYPYFTLLGQSIGSMILGVEAL-LSFQPDIYIDTMGYA-FTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHN 209 (488)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~pDiii~~~~~~-~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~ 209 (488)
...... ...+ ....+.+ ++.++|++|...... .....++ ..+.|++...|.....
T Consensus 65 -~~~~~~---~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~v~~~h~~~~~--------------- 121 (363)
T cd04955 65 -GGLGTI---IYDI---LAILHALFVKRDIDHVHALGPAIAPFLPLLR-LKGKKVVVNMDGLEWK--------------- 121 (363)
T ss_pred -cchhhh---HHHH---HHHHHHHhccCCeEEEEecCccHHHHHHHHH-hcCCCEEEEccCccee---------------
Confidence 000000 0001 1112222 345566666554322 1112222 3478888888753210
Q ss_pred CccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhc-cC---CCC
Q psy15555 210 NSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKK-IT---HSK 285 (488)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~-~~---~~~ 285 (488)
.. .......+.+...++...+.+|.++++|+..++.+.+.++.+ ..+++|++|...+.+ .. ...
T Consensus 122 ------~~----~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~--~~~i~ngv~~~~~~~~~~~~~~~~ 189 (363)
T cd04955 122 ------RA----KWGRPAKRYLKFGEKLAVKFADRLIADSPGIKEYLKEKYGRD--STYIPYGADHVVSSEEDEILKKYG 189 (363)
T ss_pred ------ec----ccccchhHHHHHHHHHHHhhccEEEeCCHHHHHHHHHhcCCC--CeeeCCCcChhhcchhhhhHHhcC
Confidence 00 000111233444566678899999999999999997777754 389999999776543 11 111
Q ss_pred CCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHH-hcCCCCcEEEecC
Q psy15555 286 TDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCK-HLSLENNVEFKVN 364 (488)
Q Consensus 286 ~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~-~~~l~~~v~~~g~ 364 (488)
..++..++++|++.+.||++.+++|++++. ++++|+++|.++.. +.+.+.++ ..+..++|+++|+
T Consensus 190 ~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~--------~~~~l~ivG~~~~~------~~~~~~~~~~~~~~~~V~~~g~ 255 (363)
T cd04955 190 LEPGRYYLLVGRIVPENNIDDLIEAFSKSN--------SGKKLVIVGNADHN------TPYGKLLKEKAAADPRIIFVGP 255 (363)
T ss_pred CCCCcEEEEEecccccCCHHHHHHHHHhhc--------cCceEEEEcCCCCc------chHHHHHHHHhCCCCcEEEccc
Confidence 123456889999999999999999999874 46899999998643 23333333 5666789999999
Q ss_pred CChHHHHHHHHhCcEEEEcCCC-CcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHH
Q psy15555 365 LPYEDMKKEFSEGLIGLHAMWN-EHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLIL 443 (488)
Q Consensus 365 ~~~~el~~~~~~ad~~v~~s~~-e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll 443 (488)
++++|+.++|+.||+++.||.. |++|.+++|||++|+|||+++.++.. |++++. |.++++.+.+++++.+++
T Consensus 256 ~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~-e~~~~~------g~~~~~~~~l~~~i~~l~ 328 (363)
T cd04955 256 IYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFNR-EVLGDK------AIYFKVGDDLASLLEELE 328 (363)
T ss_pred cChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCccc-eeecCC------eeEecCchHHHHHHHHHH
Confidence 9999999999999999999988 99999999999999999999999886 887654 777664444999999999
Q ss_pred ccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHH
Q psy15555 444 HLSQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 444 ~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~ 478 (488)
+ +++.+.++++++++.+ ++|||+.+++++.++|+
T Consensus 329 ~-~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 329 A-DPEEVSAMAKAARERIREKYTWEKIADQYEELYK 363 (363)
T ss_pred h-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 9 9999999999999998 78999999999999874
No 33
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=100.00 E-value=2.1e-33 Score=272.58 Aligned_cols=362 Identities=21% Similarity=0.211 Sum_probs=269.6
Q ss_pred EEEEeccCCCCC-CCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 54 TVAFFHPYCNAG-GGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 54 rI~~~~~~~~~~-gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
||+++++..... ||+...+..++++|.+. +++|.+++............. . ......
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~--g~~v~i~~~~~~~~~~~~~~~----------~--~~~~~~-------- 58 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAAR--GHEVTVLTPGDGGLPDEEEVG----------G--IVVVRP-------- 58 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhc--CceEEEEecCCCCCCceeeec----------C--cceecC--------
Confidence 688888777666 78999999999999987 455555555432211100000 0 000000
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhh-hhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCc
Q psy15555 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP-LFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNS 211 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~-~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~ 211 (488)
....................+.++..+||+|+.+........ ......++|++...|......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~---------------- 122 (374)
T cd03801 59 PPLLRVRRLLLLLLLALRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGR---------------- 122 (374)
T ss_pred CcccccchhHHHHHHHHHHHHHhhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhc----------------
Confidence 000001111111222344556778889999987764444332 233467899999999654211
Q ss_pred cccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccC-CceEEEcCCCCchhhhcc------CCC
Q psy15555 212 QRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQ-LKTYKLYPPCDTEDLKKI------THS 284 (488)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~-~k~~vi~~~~d~~~~~~~------~~~ 284 (488)
. .. .............+..++.+|.+++.|+.+++.+.+.++.+ .++.+++|+++...+.+. ...
T Consensus 123 ----~---~~-~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 194 (374)
T cd03801 123 ----P---GN-ELGLLLKLARALERRALRRADRIIAVSEATREELRELGGVPPEKITVIPNGVDTERFRPAPRAARRRLG 194 (374)
T ss_pred ----c---cc-chhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHHhcCCCCCCcEEEecCcccccccCccchHHHhhcC
Confidence 0 00 01222334444566788899999999999999999977754 589999999988776432 222
Q ss_pred CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC
Q psy15555 285 KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN 364 (488)
Q Consensus 285 ~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 364 (488)
...++++++++|++...||++.+++++..+.++. ++++++++|.++ ..+.+++.+++.+..++|.+.|.
T Consensus 195 ~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~-----~~~~l~i~G~~~------~~~~~~~~~~~~~~~~~v~~~g~ 263 (374)
T cd03801 195 IPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEY-----PDVRLVIVGDGP------LREELEALAAELGLGDRVTFLGF 263 (374)
T ss_pred CcCCCeEEEEecchhhhcCHHHHHHHHHHHhhhc-----CCeEEEEEeCcH------HHHHHHHHHHHhCCCcceEEEec
Confidence 3356789999999999999999999999998877 799999999763 34777888888888899999999
Q ss_pred CChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHHH
Q psy15555 365 LPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLI 442 (488)
Q Consensus 365 ~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~l 442 (488)
++.+|+..+|+.||+++.|+..|++|++++|||++|+|||+++.++.. +++.++ .+|++++ |+++++++|.++
T Consensus 264 ~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~~~~-~~~~~~----~~g~~~~~~~~~~l~~~i~~~ 338 (374)
T cd03801 264 VPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVGGIP-EVVEDG----ETGLLVPPGDPEALAEAILRL 338 (374)
T ss_pred cChhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCCCChh-HHhcCC----cceEEeCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998886 888877 7899877 689999999999
Q ss_pred HccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHH
Q psy15555 443 LHLSQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 443 l~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~ 478 (488)
+. +++.+.++++++++.. +.|+|+.+++++.++++
T Consensus 339 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (374)
T cd03801 339 LD-DPELRRRLGEAARERVAERFSWDRVAARTEEVYY 374 (374)
T ss_pred Hc-ChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhC
Confidence 99 9999999999999777 99999999999998873
No 34
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=100.00 E-value=1.5e-33 Score=272.98 Aligned_cols=342 Identities=16% Similarity=0.196 Sum_probs=254.7
Q ss_pred EEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeecc
Q psy15555 54 TVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEAS 133 (488)
Q Consensus 54 rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 133 (488)
||+++++.++. |+++.++.++++|.++|+++. +++.......... ... . . .. .... +
T Consensus 1 ki~~~~~~~~~--~~~~~~~~~~~~L~~~g~~v~--v~~~~~~~~~~~~-~~~----~-~--~~-~~~~------~---- 57 (355)
T cd03799 1 KIAYLVKEFPR--LSETFILREILALEAAGHEVE--IFSLRPPEDTLVH-PED----R-A--EL-ARTR------Y---- 57 (355)
T ss_pred CEEEECCCCCC--cchHHHHHHHHHHHhCCCeEE--EEEecCccccccc-ccc----c-c--cc-cchH------H----
Confidence 68998877643 388999999999999954444 4444322211000 000 0 0 00 0000 0
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccch-hh-hhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCc
Q psy15555 134 LYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFT-YP-LFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNS 211 (488)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~-~~-~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~ 211 (488)
.......+.......+.+++.+||+||.+...... .. ......+.|++...|......
T Consensus 58 ----~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 117 (355)
T cd03799 58 ----LARSLALLAQALVLARELRRLGIDHIHAHFGTTPATVAMLASRLGGIPYSFTAHGKDIFR---------------- 117 (355)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHHhcCCCEEEEEecccccc----------------
Confidence 01111112222334455677899999977542222 22 222234788888888543111
Q ss_pred cccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhc-cCCceEEEcCCCCchhhhccCCCCCCCCe
Q psy15555 212 QRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWN-CQLKTYKLYPPCDTEDLKKITHSKTDGPV 290 (488)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~-~~~k~~vi~~~~d~~~~~~~~~~~~~~~~ 290 (488)
.. . . ..++..++.+|.++++|+..++.+.+.++ ...++.+++|++|.+.+.........++.
T Consensus 118 ----~~---~---~-------~~~~~~~~~~~~vi~~s~~~~~~l~~~~~~~~~~~~vi~~~~d~~~~~~~~~~~~~~~~ 180 (355)
T cd03799 118 ----SP---D---A-------IDLDEKLARADFVVAISEYNRQQLIRLLGCDPDKIHVVHCGVDLERFPPRPPPPPGEPL 180 (355)
T ss_pred ----cC---c---h-------HHHHHHHhhCCEEEECCHHHHHHHHHhcCCCcccEEEEeCCcCHHHcCCccccccCCCe
Confidence 00 0 0 23445678899999999999999999743 34589999999998877654322335678
Q ss_pred EEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHH
Q psy15555 291 KIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDM 370 (488)
Q Consensus 291 ~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el 370 (488)
.++++|++.+.||++.+++++..+.++. ++++++++|.++.. +++++.+++.++.++|.+.|.++.+|+
T Consensus 181 ~i~~~g~~~~~k~~~~l~~~~~~l~~~~-----~~~~l~i~G~~~~~------~~~~~~~~~~~~~~~v~~~g~~~~~~l 249 (355)
T cd03799 181 RILSVGRLVEKKGLDYLLEALALLKDRG-----IDFRLDIVGDGPLR------DELEALIAELGLEDRVTLLGAKSQEEV 249 (355)
T ss_pred EEEEEeeeccccCHHHHHHHHHHHhhcC-----CCeEEEEEECCccH------HHHHHHHHHcCCCCeEEECCcCChHHH
Confidence 8999999999999999999999998876 79999999998644 678888888888899999999999999
Q ss_pred HHHHHhCcEEEEcCCC------CcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHHH
Q psy15555 371 KKEFSEGLIGLHAMWN------EHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLI 442 (488)
Q Consensus 371 ~~~~~~ad~~v~~s~~------e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~l 442 (488)
..+|+.||+++.||.. |++|.+++|||++|+|||+++.++.. ++++++ .+|++++ |+++++++|.++
T Consensus 250 ~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~-~~i~~~----~~g~~~~~~~~~~l~~~i~~~ 324 (355)
T cd03799 250 RELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIP-ELVEDG----ETGLLVPPGDPEALADAIERL 324 (355)
T ss_pred HHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcc-hhhhCC----CceEEeCCCCHHHHHHHHHHH
Confidence 9999999999999988 99999999999999999999998886 899887 7899886 899999999999
Q ss_pred HccCHHHHHHHHHHHHHHH-hhcCHHHHHHH
Q psy15555 443 LHLSQDTKTRISQNAVSSV-DRFSMEEFKNG 472 (488)
Q Consensus 443 l~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~ 472 (488)
++ +++.+.++++++++.+ ++|||+..+++
T Consensus 325 ~~-~~~~~~~~~~~a~~~~~~~~s~~~~~~~ 354 (355)
T cd03799 325 LD-DPELRREMGEAGRARVEEEFDIRKQAAR 354 (355)
T ss_pred Hh-CHHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 99 9999999999999998 89999998875
No 35
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=2.4e-33 Score=272.06 Aligned_cols=350 Identities=21% Similarity=0.229 Sum_probs=257.6
Q ss_pred EEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeecc
Q psy15555 54 TVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEAS 133 (488)
Q Consensus 54 rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 133 (488)
||+++.+.... ||+++++..++++|.+.++++.++..... ......... .+ +.+..++....
T Consensus 1 ~i~~i~~~~~~-gG~~~~~~~l~~~l~~~~~~v~~~~~~~~--~~~~~~~~~----------~~-i~v~~~~~~~~---- 62 (365)
T cd03807 1 KVLHVITGLDV-GGAERMLVRLLKGLDRDRFEHVVISLTDR--GELGEELEE----------AG-VPVYCLGKRPG---- 62 (365)
T ss_pred CeEEEEeeccC-ccHHHHHHHHHHHhhhccceEEEEecCcc--hhhhHHHHh----------cC-CeEEEEecccc----
Confidence 68888887766 77999999999999888555554443222 211111111 12 44444443322
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhh-hhhhh-CCCeeEEEEeCCccchHHHHHHHhhhhcccCc
Q psy15555 134 LYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP-LFSYI-GGSKVACYIHYPTITKEMLTRVARRVITHNNS 211 (488)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~-~~~~~-~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~ 211 (488)
... +.......+.+++.+||+|+.+...+.... ..... .+.+++...|......
T Consensus 63 -~~~-------~~~~~~~~~~~~~~~~div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------- 118 (365)
T cd03807 63 -RPD-------PGALLRLYKLIRRLRPDVVHTWMYHADLYGGLAARLAGVPPVIWGIRHSDLDL---------------- 118 (365)
T ss_pred -ccc-------HHHHHHHHHHHHhhCCCEEEeccccccHHHHHHHHhcCCCcEEEEecCCcccc----------------
Confidence 000 111233556778889999987654443332 22223 5778888777543110
Q ss_pred cccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCC-------
Q psy15555 212 QRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHS------- 284 (488)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~------- 284 (488)
. .........+.+...+.+|.++++|+..++.+.+.+....++.+++|++|...+.+....
T Consensus 119 --------~----~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 186 (365)
T cd03807 119 --------G----KKSTRLVARLRRLLSSFIPLIVANSAAAAEYHQAIGYPPKKIVVIPNGVDTERFSPDLDARARLREE 186 (365)
T ss_pred --------c----chhHhHHHHHHHHhccccCeEEeccHHHHHHHHHcCCChhheeEeCCCcCHHhcCCcccchHHHHHh
Confidence 0 011122334555677889999999999999999864444588999999997766543321
Q ss_pred --CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHH-hcCCCCcEEE
Q psy15555 285 --KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCK-HLSLENNVEF 361 (488)
Q Consensus 285 --~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~-~~~l~~~v~~ 361 (488)
.+.+.+.++++|++.+.||++.+++|+..+.++. ++++++++|.++.. +.+++... +.++.+++.+
T Consensus 187 ~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~-----~~~~l~i~G~~~~~------~~~~~~~~~~~~~~~~v~~ 255 (365)
T cd03807 187 LGLPEDTFLIGIVARLHPQKDHATLLRAAALLLKKF-----PNARLLLVGDGPDR------ANLELLALKELGLEDKVIL 255 (365)
T ss_pred cCCCCCCeEEEEecccchhcCHHHHHHHHHHHHHhC-----CCeEEEEecCCcch------hHHHHHHHHhcCCCceEEE
Confidence 2245688999999999999999999999998876 89999999998754 34444554 7788889999
Q ss_pred ecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHH
Q psy15555 362 KVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTI 439 (488)
Q Consensus 362 ~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i 439 (488)
.|.. +|+..+|+.||+++.||..|++|++++|||++|+|||+++.++.. +++.+. |++++ |+++++++|
T Consensus 256 ~g~~--~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~~~-e~~~~~------g~~~~~~~~~~l~~~i 326 (365)
T cd03807 256 LGER--SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVGDNA-ELVGDT------GFLVPPGDPEALAEAI 326 (365)
T ss_pred cccc--ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCCChH-HHhhcC------CEEeCCCCHHHHHHHH
Confidence 9976 899999999999999999999999999999999999999999886 777643 66654 899999999
Q ss_pred HHHHccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHH
Q psy15555 440 KLILHLSQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 440 ~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~ 478 (488)
.++++ +++.+.++++++++.+ ++|||+.+++++.++|+
T Consensus 327 ~~l~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 365 (365)
T cd03807 327 EALLA-DPALRQALGEAARERIEENFSIEAMVEAYEELYR 365 (365)
T ss_pred HHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 99999 9999999999999999 88999999999999874
No 36
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=1e-33 Score=274.20 Aligned_cols=328 Identities=17% Similarity=0.180 Sum_probs=244.9
Q ss_pred CCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeeccCchhHHHHHHH
Q psy15555 65 GGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEASLYPYFTLLGQS 144 (488)
Q Consensus 65 ~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (488)
.||+++++..++++|.++ +++|.+++.... .....+. .. +.+...+.... ..+ ..
T Consensus 9 ~gG~e~~~~~l~~~L~~~--g~~v~v~~~~~~--~~~~~~~----------~~-~~~~~~~~~~~---~~~-------~~ 63 (355)
T cd03819 9 SGGVERGTLELARALVER--GHRSLVASAGGR--LVAELEA----------EG-SRHIKLPFISK---NPL-------RI 63 (355)
T ss_pred cCcHHHHHHHHHHHHHHc--CCEEEEEcCCCc--hHHHHHh----------cC-CeEEEcccccc---chh-------hh
Confidence 378999999999999998 566666655421 1111111 11 32322221110 001 01
Q ss_pred HHHHHHHHHHhhhcCCcEEEecCCccchhhh-hhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhh
Q psy15555 145 IGSMILGVEALLSFQPDIYIDTMGYAFTYPL-FSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSF 223 (488)
Q Consensus 145 ~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~-~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (488)
+.....+.+.+++.+||+||.+...+..... +....++|++...|.... ..
T Consensus 64 ~~~~~~l~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~--------------------------~~-- 115 (355)
T cd03819 64 LLNVARLRRLIREEKVDIVHARSRAPAWSAYLAARRTRPPFVTTVHGFYS--------------------------VN-- 115 (355)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHhcCCCEEEEeCCchh--------------------------hH--
Confidence 1122445667888999999977644433222 222457899988885320 00
Q ss_pred hHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccC-CceEEEcCCCCchhhhccCC------------CCCCCCe
Q psy15555 224 KLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQ-LKTYKLYPPCDTEDLKKITH------------SKTDGPV 290 (488)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~-~k~~vi~~~~d~~~~~~~~~------------~~~~~~~ 290 (488)
. .++..++.+|.+++.|+..++.+.+.++.+ .++.+++|++|.+.+.+... ...++.+
T Consensus 116 -~--------~~~~~~~~~~~vi~~s~~~~~~~~~~~~~~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (355)
T cd03819 116 -F--------RYNAIMARGDRVIAVSNFIADHIRENYGVDPDRIRVIPRGVDLDRFDPGAVPPERILALAREWPLPKGKP 186 (355)
T ss_pred -H--------HHHHHHHhcCEEEEeCHHHHHHHHHhcCCChhhEEEecCCccccccCccccchHHHHHHHHHcCCCCCce
Confidence 0 122345678999999999999998666654 48999999999877654322 1245678
Q ss_pred EEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHH
Q psy15555 291 KIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDM 370 (488)
Q Consensus 291 ~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el 370 (488)
+++++|++.+.||.+.+++++..+.++. ++++++++|.++..+ ...+.+.+.+++.++.++|.+.|+. +|+
T Consensus 187 ~i~~~Gr~~~~Kg~~~li~~~~~l~~~~-----~~~~l~ivG~~~~~~--~~~~~~~~~~~~~~~~~~v~~~g~~--~~~ 257 (355)
T cd03819 187 VILLPGRLTRWKGQEVFIEALARLKKDD-----PDVHLLIVGDAQGRR--FYYAELLELIKRLGLQDRVTFVGHC--SDM 257 (355)
T ss_pred EEEEeeccccccCHHHHHHHHHHHHhcC-----CCeEEEEEECCcccc--hHHHHHHHHHHHcCCcceEEEcCCc--ccH
Confidence 9999999999999999999999998876 799999999987442 4456677788888888899999995 899
Q ss_pred HHHHHhCcEEEEcC-CCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHHHHccCH
Q psy15555 371 KKEFSEGLIGLHAM-WNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILHLSQ 447 (488)
Q Consensus 371 ~~~~~~ad~~v~~s-~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~~~~ 447 (488)
..+|+.||++++|| ..|++|++++|||++|+|||+++.++.. |++.++ .+|++++ |+++++++|..++..++
T Consensus 258 ~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~~~-e~i~~~----~~g~~~~~~~~~~l~~~i~~~~~~~~ 332 (355)
T cd03819 258 PAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGGAR-ETVRPG----ETGLLVPPGDAEALAQALDQILSLLP 332 (355)
T ss_pred HHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCCcH-HHHhCC----CceEEeCCCCHHHHHHHHHHHHhhCH
Confidence 99999999999999 8999999999999999999999998886 999887 7899875 99999999976665489
Q ss_pred HHHHHHHHHHHHHH-hhcCHHH
Q psy15555 448 DTKTRISQNAVSSV-DRFSMEE 468 (488)
Q Consensus 448 ~~~~~~~~~a~~~~-~~~s~~~ 468 (488)
+.+.+++++|++.+ ++||++.
T Consensus 333 ~~~~~~~~~a~~~~~~~f~~~~ 354 (355)
T cd03819 333 EGRAKMFAKARMCVETLFSYDR 354 (355)
T ss_pred HHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999 9999875
No 37
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=6.1e-34 Score=276.01 Aligned_cols=343 Identities=16% Similarity=0.163 Sum_probs=248.5
Q ss_pred EEEEeccCCCC-CCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 54 TVAFFHPYCNA-GGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 54 rI~~~~~~~~~-~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
||+++.+...+ .||.++.+..++++|.++++++.++ +............ .. ..+..++.....
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g~~v~v~--~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~-- 64 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVL--CASPEPKGRDEER-----------NG-HRVIRAPSLLNV-- 64 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCCCceEEE--ecCCCCcchhhhc-----------cC-ceEEEeeccccc--
Confidence 57777766665 7889999999999999995555544 4432221111000 11 222222211111
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhhh-hhCCCeeEEEEeCCccchHHHHHHHhhhhcccCc
Q psy15555 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFS-YIGGSKVACYIHYPTITKEMLTRVARRVITHNNS 211 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~~-~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~ 211 (488)
........ ..... .++..+||++|.+..++....... ...+.|.+.+.|....
T Consensus 65 ~~~~~~~~-------~~~~~-~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~------------------ 118 (357)
T cd03795 65 ASTPFSPS-------FFKQL-KKLAKKADVIHLHFPNPLADLALLLLPRKKPVVVHWHSDIV------------------ 118 (357)
T ss_pred ccccccHH-------HHHHH-HhcCCCCCEEEEecCcchHHHHHHHhccCceEEEEEcChhh------------------
Confidence 00000000 01011 155779999886654443322221 1347788888774321
Q ss_pred cccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCC------CC
Q psy15555 212 QRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITH------SK 285 (488)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~------~~ 285 (488)
.. ....+.+..+.+..++.+|.+++.|+...+.+...+..+.++.+++|++|...+.+... ..
T Consensus 119 --------~~---~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~gi~~~~~~~~~~~~~~~~~~ 187 (357)
T cd03795 119 --------KQ---KLLLKLYRPLQRRFLRRADAIVATSPNYAETSPVLRRFRDKVRVIPLGLDPARYPRPDALEEAIWRR 187 (357)
T ss_pred --------cc---chhhhhhhHHHHHHHHhcCEEEeCcHHHHHHHHHhcCCccceEEecCCCChhhcCCcchhhhHhhcC
Confidence 00 01223344456668889999999999999988877665578999999999876654332 13
Q ss_pred CCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCC
Q psy15555 286 TDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNL 365 (488)
Q Consensus 286 ~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 365 (488)
..++++++++|++.+.||++.+++|++++. +++++++|+++.. +++++.+++.++.++|++.|++
T Consensus 188 ~~~~~~i~~~G~~~~~K~~~~li~a~~~l~---------~~~l~i~G~g~~~------~~~~~~~~~~~~~~~V~~~g~v 252 (357)
T cd03795 188 AAGRPFFLFVGRLVYYKGLDVLLEAAAALP---------DAPLVIVGEGPLE------AELEALAAALGLLDRVRFLGRL 252 (357)
T ss_pred CCCCcEEEEecccccccCHHHHHHHHHhcc---------CcEEEEEeCChhH------HHHHHHHHhcCCcceEEEcCCC
Confidence 356789999999999999999999999873 5799999998633 6788888888888999999999
Q ss_pred ChHHHHHHHHhCcEEEEcCC--CCcCCccHHHHHHcCCcEEEeCCCCCccceecc-CCCccccceecC--CHHHHHHHHH
Q psy15555 366 PYEDMKKEFSEGLIGLHAMW--NEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIE-DPETCRNGFLAC--DEVEYAQTIK 440 (488)
Q Consensus 366 ~~~el~~~~~~ad~~v~~s~--~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~-~~~~~~~g~~~~--~~~~l~~~i~ 440 (488)
+++++.++|+.||+++.||. .|++|++++|||++|+|||+++.++.. +.+.+ + .+|++++ |+++++++|.
T Consensus 253 ~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~-~~i~~~~----~~g~~~~~~d~~~~~~~i~ 327 (357)
T cd03795 253 DDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG-SYVNLHG----VTGLVVPPGDPAALAEAIR 327 (357)
T ss_pred CHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCch-hHHhhCC----CceEEeCCCCHHHHHHHHH
Confidence 99999999999999999985 599999999999999999999998886 66654 6 7898875 8999999999
Q ss_pred HHHccCHHHHHHHHHHHHHHH-hhcCHHHHH
Q psy15555 441 LILHLSQDTKTRISQNAVSSV-DRFSMEEFK 470 (488)
Q Consensus 441 ~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~ 470 (488)
++++ +++.+++|++++++.+ ++||++.++
T Consensus 328 ~l~~-~~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (357)
T cd03795 328 RLLE-DPELRERLGEAARERAEEEFTADRMV 357 (357)
T ss_pred HHHH-CHHHHHHHHHHHHHHHHHhcchHhhC
Confidence 9999 9999999999999999 999998763
No 38
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=1.6e-33 Score=280.41 Aligned_cols=396 Identities=15% Similarity=0.116 Sum_probs=256.2
Q ss_pred cEEEEeccCCC---CCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhccc---------ccCCCeeE
Q psy15555 53 KTVAFFHPYCN---AGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNI---------VLPDQVIN 120 (488)
Q Consensus 53 ~rI~~~~~~~~---~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~v~ 120 (488)
|||++++..+. ..||...++..|+++|+++| ++|.+++...+...... ......... ...++ ++
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G--~~V~v~~p~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g-v~ 76 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALG--HDVRVLLPGYPAIREKL-RDAQVVGRLDLFTVLFGHLEGDG-VP 76 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCC--CcEEEEecCCcchhhhh-cCceEEEEeeeEEEEEEeEEcCC-ce
Confidence 79999876532 36789999999999999995 55555555433211110 000000000 01123 66
Q ss_pred EEEeeccceeecc-CchhHHHHHHHHHHHHHHHHHhhh--cCCcEEEecCCccchhhhhhh-h-----CCCeeEEEEeCC
Q psy15555 121 FVYLYRRKFVEAS-LYPYFTLLGQSIGSMILGVEALLS--FQPDIYIDTMGYAFTYPLFSY-I-----GGSKVACYIHYP 191 (488)
Q Consensus 121 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~--~~pDiii~~~~~~~~~~~~~~-~-----~~~~~v~~~h~p 191 (488)
+..++.+.+..+. .+.......++.-+...+...+++ .+|||||.+......++.... . .++|++.++|..
T Consensus 77 v~~v~~~~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~~~~~~l~~~~~~~~~~~~~v~TiH~~ 156 (466)
T PRK00654 77 VYLIDAPHLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTGLIPALLKEKYWRGYPDIKTVFTIHNL 156 (466)
T ss_pred EEEEeCHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHHHHHHHHHHhhhccCCCCCEEEEcCCC
Confidence 6666554433321 121111111111111222333333 489999999744444443321 1 368999999975
Q ss_pred ccch----HHHHHHHhhhhcccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHH-h------
Q psy15555 192 TITK----EMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQL-W------ 260 (488)
Q Consensus 192 ~~~~----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-~------ 260 (488)
...- +..... .... . .........+. ...+.+..+..+|.++++|+..++.+... +
T Consensus 157 ~~~g~~~~~~~~~~-----~~~~-~------~~~~~~~~~~~-~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~ 223 (466)
T PRK00654 157 AYQGLFPAEILGEL-----GLPA-E------AFHLEGLEFYG-QISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEG 223 (466)
T ss_pred cCCCcCCHHHHHHc-----CCCh-H------HcCchhhhcCC-cccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHH
Confidence 4210 010000 0000 0 00000000000 01134456788999999999999888652 1
Q ss_pred ---ccCCceEEEcCCCCchhhhccCCC--------------------------C-CCCCeEEEEeeccCCCCChHHHHHH
Q psy15555 261 ---NCQLKTYKLYPPCDTEDLKKITHS--------------------------K-TDGPVKIISVAQFRPEKDHPLQLRA 310 (488)
Q Consensus 261 ---~~~~k~~vi~~~~d~~~~~~~~~~--------------------------~-~~~~~~i~~~g~~~~~k~~~~ll~a 310 (488)
....|+.+|+||+|.+.+.+.... . .++.++++++||+.++||++.+++|
T Consensus 224 ~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a 303 (466)
T PRK00654 224 LLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEA 303 (466)
T ss_pred HHHhcccCceEecCCCCccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHH
Confidence 124589999999999877653210 1 1356899999999999999999999
Q ss_pred HHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEE-ecCCChHHHHHHHHhCcEEEEcCCCCcC
Q psy15555 311 MYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEF-KVNLPYEDMKKEFSEGLIGLHAMWNEHF 389 (488)
Q Consensus 311 ~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~-~g~~~~~el~~~~~~ad~~v~~s~~e~~ 389 (488)
++++.+ .+++|+|+|+|+. .+.+++++++++++ .++.+ .|+ +.+.+..+|+.||++++||..|++
T Consensus 304 ~~~l~~-------~~~~lvivG~g~~----~~~~~l~~l~~~~~--~~v~~~~g~-~~~~~~~~~~~aDv~v~PS~~E~~ 369 (466)
T PRK00654 304 LPELLE-------QGGQLVLLGTGDP----ELEEAFRALAARYP--GKVGVQIGY-DEALAHRIYAGADMFLMPSRFEPC 369 (466)
T ss_pred HHHHHh-------cCCEEEEEecCcH----HHHHHHHHHHHHCC--CcEEEEEeC-CHHHHHHHHhhCCEEEeCCCCCCc
Confidence 999875 3789999998742 34577888888876 34654 555 556678999999999999999999
Q ss_pred CccHHHHHHcCCcEEEeCCCCCccceeccCC--CccccceecC--CHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHhh
Q psy15555 390 GIGIVECMAAGLIMIAHKSGGPKMDIVIEDP--ETCRNGFLAC--DEVEYAQTIKLILHL--SQDTKTRISQNAVSSVDR 463 (488)
Q Consensus 390 g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~--~~~~~g~~~~--~~~~l~~~i~~ll~~--~~~~~~~~~~~a~~~~~~ 463 (488)
|++++|||+||+|+|+++.+|.. |++.+++ .+..+|++++ |+++++++|.++++. +++.+.++++++.+ ++
T Consensus 370 gl~~lEAma~G~p~V~~~~gG~~-e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~--~~ 446 (466)
T PRK00654 370 GLTQLYALRYGTLPIVRRTGGLA-DTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYRQPPLWRALQRQAMA--QD 446 (466)
T ss_pred hHHHHHHHHCCCCEEEeCCCCcc-ceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc--cC
Confidence 99999999999999999999997 7776531 1125799986 999999999987641 56667888877753 78
Q ss_pred cCHHHHHHHHHHHHHHhhh
Q psy15555 464 FSMEEFKNGFLTFTQPLFK 482 (488)
Q Consensus 464 ~s~~~~~~~~~~~~~~~~~ 482 (488)
|||+.+++++.++|++++.
T Consensus 447 fsw~~~a~~~~~lY~~~~~ 465 (466)
T PRK00654 447 FSWDKSAEEYLELYRRLLG 465 (466)
T ss_pred CChHHHHHHHHHHHHHHhh
Confidence 9999999999999998864
No 39
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=5.2e-33 Score=272.46 Aligned_cols=373 Identities=11% Similarity=0.056 Sum_probs=245.8
Q ss_pred EEEeccCCC--CCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 55 VAFFHPYCN--AGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 55 I~~~~~~~~--~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
|+|+++..+ +.+|+....++++++|++. ++++++..+.+.... + ..+...... .. +....++.......
T Consensus 1 iL~~~~~~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~~~~~~-~-~~~~l~~~~-----~~-~~~~~~~~~~~~~~ 71 (397)
T TIGR03087 1 ILYLVHRIPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVDDPEDW-Q-YAAALRPLC-----EE-VCVVPLDPRVARLR 71 (397)
T ss_pred CeeecCCCCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCCCcccH-H-HHHHHHHHh-----he-eEEeecCcHHHHHH
Confidence 466665433 4556788899999999885 466666665432211 1 111111111 11 22222211100000
Q ss_pred cC---c---hhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhh
Q psy15555 133 SL---Y---PYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVI 206 (488)
Q Consensus 133 ~~---~---~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~ 206 (488)
.. . +..............+.+.+++.++|+|+.......... .....++|.++..| |+....+....
T Consensus 72 ~~~~l~~~~p~~~~~~~~~~~~~~l~~~~~~~~~D~v~~~~~~~~~~~-~~~~~~~p~i~~~~------d~~~~~~~~~~ 144 (397)
T TIGR03087 72 SLLGLLTGEPLSLPYYRSRRLARWVNALLAAEPVDAIVVFSSAMAQYV-TPHVRGVPRIVDFV------DVDSDKWLQYA 144 (397)
T ss_pred HHhhhcCCCCCcchhhCCHHHHHHHHHHHhhCCCCEEEEeccccceec-cccccCCCeEeehh------hHHHHHHHHHH
Confidence 00 0 000001111223344566778889998886543222111 11145778888766 22211111100
Q ss_pred cccCccccccCccchhhhHHH---HHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhcc-CCceEEEcCCCCchhhhccC
Q psy15555 207 THNNSQRVANNPILTSFKLFY---YKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNC-QLKTYKLYPPCDTEDLKKIT 282 (488)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~-~~k~~vi~~~~d~~~~~~~~ 282 (488)
. ... ...+..+ .+.+..+++.+.+.+|.++++|+.+++.+.+.++. +.++.+++||+|.+.+.+..
T Consensus 145 ~--------~~~--~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~f~~~~ 214 (397)
T TIGR03087 145 R--------TKR--WPLRWIYRREGRLLLAYERAIAARFDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFFSPDR 214 (397)
T ss_pred h--------ccC--cchhHHHHHHHHHHHHHHHHHHhhCCeEEEcCHHHHHHHHHhCCCCCCCeEEeecccchhhcCCCc
Confidence 0 000 0011112 23455678889999999999999999999886543 45899999999988776543
Q ss_pred CC---CCCCCeEEEEeeccCCCCChHHHH----HHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCC
Q psy15555 283 HS---KTDGPVKIISVAQFRPEKDHPLQL----RAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSL 355 (488)
Q Consensus 283 ~~---~~~~~~~i~~~g~~~~~k~~~~ll----~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l 355 (488)
.. ...++++++|+|++.+.||++.++ +++..+.++. |+++|+|+|+++. +++++ ++.
T Consensus 215 ~~~~~~~~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~-----p~~~l~ivG~g~~-------~~~~~----l~~ 278 (397)
T TIGR03087 215 DYPNPYPPGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARR-----PAAEFYIVGAKPS-------PAVRA----LAA 278 (397)
T ss_pred cccCCCCCCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHC-----CCcEEEEECCCCh-------HHHHH----hcc
Confidence 21 123457899999999999999887 5566666666 8999999999872 23333 333
Q ss_pred CCcEEEecCCChHHHHHHHHhCcEEEEcCC-CCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC-CHH
Q psy15555 356 ENNVEFKVNLPYEDMKKEFSEGLIGLHAMW-NEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEV 433 (488)
Q Consensus 356 ~~~v~~~g~~~~~el~~~~~~ad~~v~~s~-~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~ 433 (488)
.++|++.|++ +++..+|+.||++|.||. .|++|++++|||++|+|||+++.++. .+.... ++|+++. |++
T Consensus 279 ~~~V~~~G~v--~~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~--~i~~~~----~~g~lv~~~~~ 350 (397)
T TIGR03087 279 LPGVTVTGSV--ADVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAE--GIDALP----GAELLVAADPA 350 (397)
T ss_pred CCCeEEeeec--CCHHHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecCcccc--cccccC----CcceEeCCCHH
Confidence 5679999999 589999999999999995 68999999999999999999987532 344333 5677765 999
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHH
Q psy15555 434 EYAQTIKLILHLSQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 434 ~l~~~i~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~ 478 (488)
+++++|.++++ |++.+++|+++|++.+ ++|||+..++++.++++
T Consensus 351 ~la~ai~~ll~-~~~~~~~~~~~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 351 DFAAAILALLA-NPAEREELGQAARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHHHHc-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 99999999999 9999999999999998 89999999999998875
No 40
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=4.2e-33 Score=271.33 Aligned_cols=361 Identities=15% Similarity=0.139 Sum_probs=251.0
Q ss_pred EEEEeccCCC-CCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 54 TVAFFHPYCN-AGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 54 rI~~~~~~~~-~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
||+++.+... ..||+++++..++++|.+.++ +|.+++...+......... . ...........
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g~--~v~v~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~--- 63 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGH--EVTVATTDAGGDPLLVALN-----------G-VPVKLFSINVA--- 63 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcCC--cEEEEecCCCCccchhhcc-----------C-ceeeecccchh---
Confidence 6888887764 677899999999999998854 4445444432221100000 0 00000000000
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccch-hhhh--hhhCCCeeEEEEeCCccchHHHHHHHhhhhccc
Q psy15555 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFT-YPLF--SYIGGSKVACYIHYPTITKEMLTRVARRVITHN 209 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~-~~~~--~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~ 209 (488)
.... .....+.............+||+++.+..+... .... ....+.|++...|.....+..
T Consensus 64 ~~~~---~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------------ 128 (375)
T cd03821 64 YGLN---LARYLFPPSLLAWLRLNIREADIVHVHGLWSYPSLAAARAARKYGIPYVVSPHGMLDPWAL------------ 128 (375)
T ss_pred hhhh---hhhhccChhHHHHHHHhCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEcccccccccc------------
Confidence 0000 000000001112223345689999876543322 1222 124688999888854321100
Q ss_pred CccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCC------
Q psy15555 210 NSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITH------ 283 (488)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~------ 283 (488)
.........+ .....+...+.++.+++.|+......... ....++.+++|++|.+.+.....
T Consensus 129 ---------~~~~~~~~~~--~~~~~~~~~~~~~~i~~~s~~~~~~~~~~-~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 196 (375)
T cd03821 129 ---------PHKALKKRLA--WFLFERRLLQAAAAVHATSEQEAAEIRRL-GLKAPIAVIPNGVDIPPFAALPSRGRRRK 196 (375)
T ss_pred ---------ccchhhhHHH--HHHHHHHHHhcCCEEEECCHHHHHHHHhh-CCcccEEEcCCCcChhccCcchhhhhhhh
Confidence 0011111111 11234556788999999998877777663 44568999999999877755431
Q ss_pred -CCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEe
Q psy15555 284 -SKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFK 362 (488)
Q Consensus 284 -~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~ 362 (488)
....++++++++|++.+.||++.+++|+..+.+++ ++++++++|.++. .+...++..+++.++.++|.+.
T Consensus 197 ~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~-----~~~~l~i~G~~~~----~~~~~~~~~~~~~~~~~~v~~~ 267 (375)
T cd03821 197 FPILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERF-----PDWHLVIAGPDEG----GYRAELKQIAAALGLEDRVTFT 267 (375)
T ss_pred ccCCCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhc-----CCeEEEEECCCCc----chHHHHHHHHHhcCccceEEEc
Confidence 13456789999999999999999999999999887 8999999998753 2335566666888888999999
Q ss_pred cCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC-CHHHHHHHHHH
Q psy15555 363 VNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKL 441 (488)
Q Consensus 363 g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ 441 (488)
|+++.+|+..+|+.||+++.||..|++|++++|||++|+|||+++.++.. +++.+. +|++++ +.++++++|.+
T Consensus 268 g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~i~~ 341 (375)
T cd03821 268 GMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVPWQ-ELIEYG-----CGWVVDDDVDALAAALRR 341 (375)
T ss_pred CCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCCHH-HHhhcC-----ceEEeCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998886 777654 688876 67999999999
Q ss_pred HHccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHH
Q psy15555 442 ILHLSQDTKTRISQNAVSSV-DRFSMEEFKNGFL 474 (488)
Q Consensus 442 ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~ 474 (488)
+++ +++.++++++++++.+ ++|||+.+++++.
T Consensus 342 l~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 374 (375)
T cd03821 342 ALE-LPQRLKAMGENGRALVEERFSWTAIAQQLL 374 (375)
T ss_pred HHh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 999 9999999999999996 9999999999875
No 41
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=4.8e-33 Score=275.66 Aligned_cols=402 Identities=13% Similarity=0.064 Sum_probs=259.8
Q ss_pred cccEEEEeccCCC---CCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhh--hhcccc----------cC
Q psy15555 51 VLKTVAFFHPYCN---AGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAH--QRFNIV----------LP 115 (488)
Q Consensus 51 ~~~rI~~~~~~~~---~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~----------~~ 115 (488)
++|||+|+...+. ..||..-++..|.++|+++|+++.| +.+..+..... ..... ..+... ..
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v--~~P~y~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRT--LVPGYPAVLAG-IEDAEQVHSFPDLFGGPARLLAARA 78 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEE--EeCCCcchhhh-hcCceEEEEEeeeCCceEEEEEEEe
Confidence 3599999875433 5678889999999999999655554 44433222111 00100 001000 00
Q ss_pred CCeeEEEEeeccceeecc--Cc------hhHHHHHHHHHHHHHHHHHh----hhcCCcEEEecCCccchhhhh-hh--hC
Q psy15555 116 DQVINFVYLYRRKFVEAS--LY------PYFTLLGQSIGSMILGVEAL----LSFQPDIYIDTMGYAFTYPLF-SY--IG 180 (488)
Q Consensus 116 ~~~v~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~l----~~~~pDiii~~~~~~~~~~~~-~~--~~ 180 (488)
++ +.+..+..+.+..+. .+ .+..-..++.-+.+++..++ ..++|||||++...+..++.. +. ..
T Consensus 79 ~~-v~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~l~~~~l~~~~~~ 157 (485)
T PRK14099 79 GG-LDLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAGLAPAYLHYSGRP 157 (485)
T ss_pred CC-ceEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHHHHHHHHHhCCCC
Confidence 22 555555444333222 11 01111111111112222322 357999999998555665543 21 23
Q ss_pred CCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHh
Q psy15555 181 GSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLW 260 (488)
Q Consensus 181 ~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~ 260 (488)
++|++.++|................ ... ..........++.. ..+.+..+.++|.|+++|+..++.+.+..
T Consensus 158 ~~~~V~TiHn~~~qg~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~-~~~~k~~i~~ad~vitVS~~~a~ei~~~~ 228 (485)
T PRK14099 158 APGTVFTIHNLAFQGQFPRELLGAL-GLP-------PSAFSLDGVEYYGG-IGYLKAGLQLADRITTVSPTYALEIQGPE 228 (485)
T ss_pred CCCEEEeCCCCCCCCcCCHHHHHHc-CCC-------hHHcCchhhhhCCC-ccHHHHHHHhcCeeeecChhHHHHHhccc
Confidence 5789999996542110000000000 000 00000000000000 01345677889999999999999887532
Q ss_pred -c---------cCCceEEEcCCCCchhhhccCCC--------------------------C--CCCCeEEEEeeccCCCC
Q psy15555 261 -N---------CQLKTYKLYPPCDTEDLKKITHS--------------------------K--TDGPVKIISVAQFRPEK 302 (488)
Q Consensus 261 -~---------~~~k~~vi~~~~d~~~~~~~~~~--------------------------~--~~~~~~i~~~g~~~~~k 302 (488)
+ ...++.+|+||+|.+.+.+.... . ..+.++++++||+.++|
T Consensus 229 ~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~li~~VgRL~~~K 308 (485)
T PRK14099 229 AGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVISRLSWQK 308 (485)
T ss_pred CCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccCCcEEEEEecCCccc
Confidence 1 24589999999998877654321 1 12467889999999999
Q ss_pred ChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcE-EEecCCChHHHHHHH-HhCcEE
Q psy15555 303 DHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNV-EFKVNLPYEDMKKEF-SEGLIG 380 (488)
Q Consensus 303 ~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v-~~~g~~~~~el~~~~-~~ad~~ 380 (488)
|++.+++|+..+.+ .+++|+|+|+|+. ++.+++++++++++ +++ .++|+. +++..+| +.||+|
T Consensus 309 G~d~Li~A~~~l~~-------~~~~lvivG~G~~----~~~~~l~~l~~~~~--~~v~~~~G~~--~~l~~~~~a~aDif 373 (485)
T PRK14099 309 GLDLLLEALPTLLG-------EGAQLALLGSGDA----ELEARFRAAAQAYP--GQIGVVIGYD--EALAHLIQAGADAL 373 (485)
T ss_pred cHHHHHHHHHHHHh-------cCcEEEEEecCCH----HHHHHHHHHHHHCC--CCEEEEeCCC--HHHHHHHHhcCCEE
Confidence 99999999999864 4789999999852 34467777777764 344 788984 8999887 579999
Q ss_pred EEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCC-----ccccceecC--CHHHHHHHHHH---HHccCHHHH
Q psy15555 381 LHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPE-----TCRNGFLAC--DEVEYAQTIKL---ILHLSQDTK 450 (488)
Q Consensus 381 v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~-----~~~~g~~~~--~~~~l~~~i~~---ll~~~~~~~ 450 (488)
++||..|+||++.+|||+||+|+|+++.+|.. |++.++++ +..+|++++ |+++++++|.+ +++ |++.+
T Consensus 374 v~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~-d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~-d~~~~ 451 (485)
T PRK14099 374 LVPSRFEPCGLTQLCALRYGAVPVVARVGGLA-DTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALFA-DPVAW 451 (485)
T ss_pred EECCccCCCcHHHHHHHHCCCCcEEeCCCCcc-ceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhc-CHHHH
Confidence 99999999999999999999988889999997 77765311 014799986 99999999987 777 89999
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhh
Q psy15555 451 TRISQNAVSSVDRFSMEEFKNGFLTFTQPLFKVM 484 (488)
Q Consensus 451 ~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~~~ 484 (488)
++|++++++ ++|||+++++++.++|++++...
T Consensus 452 ~~l~~~~~~--~~fSw~~~a~~y~~lY~~l~~~~ 483 (485)
T PRK14099 452 RRLQRNGMT--TDVSWRNPAQHYAALYRSLVAER 483 (485)
T ss_pred HHHHHHhhh--hcCChHHHHHHHHHHHHHHHhhh
Confidence 999998863 78999999999999999998654
No 42
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=100.00 E-value=9.5e-34 Score=273.75 Aligned_cols=346 Identities=20% Similarity=0.268 Sum_probs=236.1
Q ss_pred EEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeecc
Q psy15555 54 TVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEAS 133 (488)
Q Consensus 54 rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 133 (488)
||+++|+++...||+|+++..+++.+.+ +++++...+.+........ .. +....+......
T Consensus 1 ~i~~~~~~~~~~GG~E~~~~~l~~~l~~----~~v~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~--- 61 (351)
T cd03804 1 KVAIVHDWLVNIGGGEKVVEALARLFPD----ADIFTLVDDPDKLPRLLRL-----------KK-IRTSFIQKLPFA--- 61 (351)
T ss_pred CEEEEEeccccCCCHHHHHHHHHHhCCC----CCEEEEeecCCccchhhcC-----------Cc-eeechhhhchhh---
Confidence 6899999998889999999888777643 4555444332222111100 00 111111000000
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhhhhhCCCeeEEEEeCCcc-chHHHHHHHhhhhcccCcc
Q psy15555 134 LYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTI-TKEMLTRVARRVITHNNSQ 212 (488)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~-~~d~~~~~~~~~~~~~~~~ 212 (488)
...+ ...........+.+...++|+|+.+..+.... .. ...+.|.+.++|.|.. .||........
T Consensus 62 -~~~~---~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~-~~-~~~~~~~~~~~h~~~~~~~~~~~~~~~~-------- 127 (351)
T cd03804 62 -RRRY---RKYLPLMPLAIEQFDLSGYDLVISSSHAVAKG-VI-TRPDQLHICYCHTPMRYAWDLYHDYLKE-------- 127 (351)
T ss_pred -HhhH---hhhCchhhHHHHhccccCCCEEEEcCcHHhcc-cc-CCCCCcEEEEeCCchHHHhcCchHhhhh--------
Confidence 0000 01111112234456677899998776433322 22 2567888999997642 22221111110
Q ss_pred ccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCCCCCCCeEE
Q psy15555 213 RVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKI 292 (488)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~~~~~~~~i 292 (488)
...............+..+++..++++|.++++|+.+++.+.+.++. +..+++|++|.+.+.+.. ..+..+
T Consensus 128 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~--~~~vi~~~~d~~~~~~~~----~~~~~i 198 (351)
T cd03804 128 ---SGLGKRLALRLLLHYLRIWDRRSAARVDYFIANSRFVARRIKKYYGR--DATVIYPPVDTDRFTPAE----EKEDYY 198 (351)
T ss_pred ---cccchhhHHHHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHHHHhCC--CcEEECCCCCHhhcCcCC----CCCCEE
Confidence 00001111122334455667778899999999999999999887664 468999999987765432 234579
Q ss_pred EEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHH
Q psy15555 293 ISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKK 372 (488)
Q Consensus 293 ~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~ 372 (488)
+++|++.+.||++.+++|++++ + ++|+|+|+++.. +++++ +..++|+++|+++++|+..
T Consensus 199 l~~G~~~~~K~~~~li~a~~~~---------~-~~l~ivG~g~~~------~~l~~-----~~~~~V~~~g~~~~~~~~~ 257 (351)
T cd03804 199 LSVGRLVPYKRIDLAIEAFNKL---------G-KRLVVIGDGPEL------DRLRA-----KAGPNVTFLGRVSDEELRD 257 (351)
T ss_pred EEEEcCccccChHHHHHHHHHC---------C-CcEEEEECChhH------HHHHh-----hcCCCEEEecCCCHHHHHH
Confidence 9999999999999999999876 4 689999998632 34443 3468999999999999999
Q ss_pred HHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHHHHccCH-HH
Q psy15555 373 EFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILHLSQ-DT 449 (488)
Q Consensus 373 ~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~~~~-~~ 449 (488)
+|+.||+++.||. |++|++++|||++|+|||+++.++.. |++.++ .+|++++ |+++++++|.++++ ++ +.
T Consensus 258 ~~~~ad~~v~ps~-e~~g~~~~Eama~G~Pvi~~~~~~~~-e~i~~~----~~G~~~~~~~~~~la~~i~~l~~-~~~~~ 330 (351)
T cd03804 258 LYARARAFLFPAE-EDFGIVPVEAMASGTPVIAYGKGGAL-ETVIDG----VTGILFEEQTVESLAAAVERFEK-NEDFD 330 (351)
T ss_pred HHHhCCEEEECCc-CCCCchHHHHHHcCCCEEEeCCCCCc-ceeeCC----CCEEEeCCCCHHHHHHHHHHHHh-CcccC
Confidence 9999999999999 99999999999999999999999886 899887 8899875 89999999999998 77 33
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHH
Q psy15555 450 KTRISQNAVSSVDRFSMEEFKNGF 473 (488)
Q Consensus 450 ~~~~~~~a~~~~~~~s~~~~~~~~ 473 (488)
.+++ ++.+++|+|+++.+++
T Consensus 331 ~~~~----~~~~~~~~~~~~~~~~ 350 (351)
T cd03804 331 PQAI----RAHAERFSESRFREKI 350 (351)
T ss_pred HHHH----HHHHHhcCHHHHHHHh
Confidence 4444 4444789999988775
No 43
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.5e-33 Score=281.22 Aligned_cols=295 Identities=18% Similarity=0.193 Sum_probs=234.4
Q ss_pred cCCcEEEecCC-ccchhh-hhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHHHHHHHH
Q psy15555 158 FQPDIYIDTMG-YAFTYP-LFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFALLY 235 (488)
Q Consensus 158 ~~pDiii~~~~-~~~~~~-~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (488)
-++|++|.+.. +...+. .++...++|+++..|.-.... ....+.. ........+..+.+.+..+.
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~~~~~~p~I~t~Hg~~~~e-~~~~~~~------------~~~~~~~~~~~~~~~~~~l~ 238 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAKARRGTPFLLTEHGIYTRE-RKIELLQ------------ADWEMSYFRRLWIRFFESLG 238 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHHHHhCCCEEEecCCccHHH-HHHHHHh------------cccchHHHHHHHHHHHHHHH
Confidence 36899997753 222222 334467899999999643100 0000000 00012223344455666777
Q ss_pred HHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCC-CCCCCCeEEEEeeccCCCCChHHHHHHHHHh
Q psy15555 236 SHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITH-SKTDGPVKIISVAQFRPEKDHPLQLRAMYQL 314 (488)
Q Consensus 236 ~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~-~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l 314 (488)
+.+++++|.|++.|+..++...+.+..++|+.++||++|.+.+.+... ....+.++++++|++.+.||++.+++|++.+
T Consensus 239 ~~~~~~ad~Ii~~s~~~~~~~~~~g~~~~ki~vIpNgid~~~f~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l 318 (475)
T cd03813 239 RLAYQAADRITTLYEGNRERQIEDGADPEKIRVIPNGIDPERFAPARRARPEKEPPVVGLIGRVVPIKDIKTFIRAAAIV 318 (475)
T ss_pred HHHHHhCCEEEecCHHHHHHHHHcCCCHHHeEEeCCCcCHHHcCCccccccCCCCcEEEEEeccccccCHHHHHHHHHHH
Confidence 888999999999999999988776555568999999999988766542 2335678999999999999999999999999
Q ss_pred HHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHH
Q psy15555 315 RQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIV 394 (488)
Q Consensus 315 ~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~l 394 (488)
.++. |+++++|+|.++. ++++.++++++++++++.++|+|+| .+++.++|+.+|+++.||..|++|++++
T Consensus 319 ~~~~-----p~~~l~IvG~g~~--~~~~~~e~~~li~~l~l~~~V~f~G---~~~v~~~l~~aDv~vlpS~~Eg~p~~vl 388 (475)
T cd03813 319 RKKI-----PDAEGWVIGPTDE--DPEYAEECRELVESLGLEDNVKFTG---FQNVKEYLPKLDVLVLTSISEGQPLVIL 388 (475)
T ss_pred HHhC-----CCeEEEEECCCCc--ChHHHHHHHHHHHHhCCCCeEEEcC---CccHHHHHHhCCEEEeCchhhcCChHHH
Confidence 9887 8999999998863 3477899999999999999999999 3799999999999999999999999999
Q ss_pred HHHHcCCcEEEeCCCCCccceeccCCCc---cccceecC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-hhcCHHH
Q psy15555 395 ECMAAGLIMIAHKSGGPKMDIVIEDPET---CRNGFLAC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSV-DRFSMEE 468 (488)
Q Consensus 395 Ea~a~G~PvI~~~~~~~~~eiv~~~~~~---~~~g~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~ 468 (488)
|||+||+|||+++.++.. |++.+. .+ +.+|++++ |+++++++|.++++ |++.++++++++++.+ +.|+|+.
T Consensus 389 EAma~G~PVVatd~g~~~-elv~~~-~~~~~g~~G~lv~~~d~~~la~ai~~ll~-~~~~~~~~~~~a~~~v~~~~s~~~ 465 (475)
T cd03813 389 EAMAAGIPVVATDVGSCR-ELIEGA-DDEALGPAGEVVPPADPEALARAILRLLK-DPELRRAMGEAGRKRVERYYTLER 465 (475)
T ss_pred HHHHcCCCEEECCCCChH-HHhcCC-cccccCCceEEECCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhCCHHH
Confidence 999999999999999986 888872 00 15798876 99999999999999 9999999999999999 8899999
Q ss_pred HHHHHHHHHH
Q psy15555 469 FKNGFLTFTQ 478 (488)
Q Consensus 469 ~~~~~~~~~~ 478 (488)
++++|.++|+
T Consensus 466 ~~~~y~~lY~ 475 (475)
T cd03813 466 MIDSYRRLYL 475 (475)
T ss_pred HHHHHHHHhC
Confidence 9999999874
No 44
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=4.9e-33 Score=269.98 Aligned_cols=344 Identities=20% Similarity=0.243 Sum_probs=249.3
Q ss_pred EEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeecc
Q psy15555 54 TVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEAS 133 (488)
Q Consensus 54 rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 133 (488)
||+++++... .||+++.+..++++|.++++++.++.......... ... . .....+.....
T Consensus 1 ~il~~~~~~~-~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~---~~~----------~--~~~~~~~~~~~---- 60 (360)
T cd04951 1 KILYVITGLG-LGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKP---PID----------A--TIILNLNMSKN---- 60 (360)
T ss_pred CeEEEecCCC-CCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccc---hhh----------c--cceEEeccccc----
Confidence 4777776553 57799999999999999866666555444321110 101 0 00111111100
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhh-hh-hCCCeeEEEEeCCccchHHHHHHHhhhhcccCc
Q psy15555 134 LYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLF-SY-IGGSKVACYIHYPTITKEMLTRVARRVITHNNS 211 (488)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~-~~-~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~ 211 (488)
... .+.......+++++.+||+||.+...+..+..+ +. ..+.+++...|....
T Consensus 61 ~~~-------~~~~~~~~~~~~~~~~pdiv~~~~~~~~~~~~l~~~~~~~~~~v~~~h~~~~------------------ 115 (360)
T cd04951 61 PLS-------FLLALWKLRKILRQFKPDVVHAHMFHANIFARLLRLFLPSPPLICTAHSKNE------------------ 115 (360)
T ss_pred chh-------hHHHHHHHHHHHHhcCCCEEEEcccchHHHHHHHHhhCCCCcEEEEeeccCc------------------
Confidence 000 112224466778889999999876555443322 21 235677777774320
Q ss_pred cccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhcc-CCceEEEcCCCCchhhhccCC-------
Q psy15555 212 QRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNC-QLKTYKLYPPCDTEDLKKITH------- 283 (488)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~-~~k~~vi~~~~d~~~~~~~~~------- 283 (488)
.... ..+..+.....++.++++|+...+.+.+.+.. +.++.++||++|...+.+...
T Consensus 116 --------~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~i~ng~~~~~~~~~~~~~~~~~~ 180 (360)
T cd04951 116 --------GGRL-------RMLAYRLTDFLSDLTTNVSKEALDYFIASKAFNANKSFVVYNGIDTDRFRKDPARRLKIRN 180 (360)
T ss_pred --------hhHH-------HHHHHHHHhhccCceEEEcHHHHHHHHhccCCCcccEEEEccccchhhcCcchHHHHHHHH
Confidence 0011 11122334455788889999999999887643 358999999998776543321
Q ss_pred --CCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEE
Q psy15555 284 --SKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEF 361 (488)
Q Consensus 284 --~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~ 361 (488)
...+++++++++|++.+.||++.++++++++.++. |+++|+|+|+|+.. +++++.+++.++.++|.+
T Consensus 181 ~~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~-----~~~~l~i~G~g~~~------~~~~~~~~~~~~~~~v~~ 249 (360)
T cd04951 181 ALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSDY-----LDIKLLIAGDGPLR------ATLERLIKALGLSNRVKL 249 (360)
T ss_pred HcCcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHhhC-----CCeEEEEEcCCCcH------HHHHHHHHhcCCCCcEEE
Confidence 12356789999999999999999999999998877 79999999998743 678888888888889999
Q ss_pred ecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceec--CCHHHHHHHH
Q psy15555 362 KVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLA--CDEVEYAQTI 439 (488)
Q Consensus 362 ~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~--~~~~~l~~~i 439 (488)
.|.. +++..+|+.||++++||..|++|++++|||++|+|||+++.++.. |++++. |+.+ .|++++++++
T Consensus 250 ~g~~--~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~~~~-e~i~~~------g~~~~~~~~~~~~~~i 320 (360)
T cd04951 250 LGLR--DDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAGGVR-EVVGDS------GLIVPISDPEALANKI 320 (360)
T ss_pred eccc--ccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecCCChh-hEecCC------ceEeCCCCHHHHHHHH
Confidence 9987 899999999999999999999999999999999999999998886 888754 5554 4999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHH
Q psy15555 440 KLILHLSQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 440 ~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~ 478 (488)
.++++++++.+..++++ ++.+ ++|||+.+++++.++|+
T Consensus 321 ~~ll~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 321 DEILKMSGEERDIIGAR-RERIVKKFSINSIVQQWLTLYT 359 (360)
T ss_pred HHHHhCCHHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHhh
Confidence 99995477777777776 6666 99999999999999986
No 45
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=8.8e-33 Score=274.11 Aligned_cols=400 Identities=15% Similarity=0.117 Sum_probs=261.2
Q ss_pred cccEEEEeccCC---CCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHH--HHHhhh--hccccc---------
Q psy15555 51 VLKTVAFFHPYC---NAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEI--IKRAHQ--RFNIVL--------- 114 (488)
Q Consensus 51 ~~~rI~~~~~~~---~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~--~~~~~~--------- 114 (488)
+.|||+|+...+ ...||..-++-.|.++|+++|+ +|.++........... ...... .+.+.+
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~--~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGF--EARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHV 81 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCC--eEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEEE
Confidence 349999987543 3677888999999999999955 4444444332221110 000000 010010
Q ss_pred -----CCCeeEEEEeeccceeecc-Cch-------hHHHHHHHHHHHHHHHHHhhh--cCCcEEEecCCccchhhhhhh-
Q psy15555 115 -----PDQVINFVYLYRRKFVEAS-LYP-------YFTLLGQSIGSMILGVEALLS--FQPDIYIDTMGYAFTYPLFSY- 178 (488)
Q Consensus 115 -----~~~~v~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~l~~--~~pDiii~~~~~~~~~~~~~~- 178 (488)
+..++.+..+..+.+..+. .+. +..-..++..+...+.+.+++ ++|||||.+...+..++.+..
T Consensus 82 ~~~~~~~~~v~~~~~~~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~l~~~~l~~ 161 (489)
T PRK14098 82 KVTALPSSKIQTYFLYNEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAGLVPLLLKT 161 (489)
T ss_pred EEecccCCCceEEEEeCHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHH
Confidence 1001333333332222221 111 111111222222333344443 689999998755555554321
Q ss_pred -------hCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhh-hHH-HHHHHHHHHHHHhcccCEEEEcC
Q psy15555 179 -------IGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSF-KLF-YYKVFALLYSHVGKYSDIIMVNS 249 (488)
Q Consensus 179 -------~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~d~ii~~s 249 (488)
..++|++.++|.....-.+........ ..... ... .+.....+.+..+..+|.|+++|
T Consensus 162 ~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~-------------~~~~~~~~~~~~~~~~n~lk~~i~~ad~VitVS 228 (489)
T PRK14098 162 VYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKL-------------LPEEVCSGLHREGDEVNMLYTGVEHADLLTTTS 228 (489)
T ss_pred HhhhccccCCCCEEEEcCCCcccCCCCHHHHHHh-------------CCHHhhhhhhhcCCcccHHHHHHHhcCcceeeC
Confidence 137899999996431000000000000 00000 000 00000123455678899999999
Q ss_pred hhHHHHHHHH----hcc-------CCceEEEcCCCCchhhhccCCC----------------------------CCCCCe
Q psy15555 250 SWTEEHVIQL----WNC-------QLKTYKLYPPCDTEDLKKITHS----------------------------KTDGPV 290 (488)
Q Consensus 250 ~~~~~~~~~~----~~~-------~~k~~vi~~~~d~~~~~~~~~~----------------------------~~~~~~ 290 (488)
+..++.+.+. ++. ..++.+|+||+|.+.+.+.... ..++.+
T Consensus 229 ~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~~~~ 308 (489)
T PRK14098 229 PRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPFDEETP 308 (489)
T ss_pred HHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCCccCCC
Confidence 9999988752 121 3589999999999887764321 013567
Q ss_pred EEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHH
Q psy15555 291 KIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDM 370 (488)
Q Consensus 291 ~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el 370 (488)
+++++||+.+.||++.+++|+.++.+ ++++|+|+|+|+. .+.++++++++++ +++|.+.|.++.+++
T Consensus 309 ~i~~vgRl~~~KG~d~li~a~~~l~~-------~~~~lvivG~G~~----~~~~~l~~l~~~~--~~~V~~~g~~~~~~~ 375 (489)
T PRK14098 309 LVGVIINFDDFQGAELLAESLEKLVE-------LDIQLVICGSGDK----EYEKRFQDFAEEH--PEQVSVQTEFTDAFF 375 (489)
T ss_pred EEEEeccccccCcHHHHHHHHHHHHh-------cCcEEEEEeCCCH----HHHHHHHHHHHHC--CCCEEEEEecCHHHH
Confidence 99999999999999999999999874 4789999999852 3457888888876 468999999999999
Q ss_pred HHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHHHH---cc
Q psy15555 371 KKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLIL---HL 445 (488)
Q Consensus 371 ~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll---~~ 445 (488)
..+|+.||++++||..|++|++.+|||++|+|+|+++.+|.. |.+.+.+.+..+|++++ |+++++++|.+++ .
T Consensus 376 ~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~-d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~- 453 (489)
T PRK14098 376 HLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIV-ETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYH- 453 (489)
T ss_pred HHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCc-eeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHc-
Confidence 999999999999999999999999999999999999999987 77754211226899986 8999999999864 5
Q ss_pred CHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhh
Q psy15555 446 SQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLFK 482 (488)
Q Consensus 446 ~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~ 482 (488)
+++.+.++++++. .++|||+..++++.++|+++++
T Consensus 454 ~~~~~~~~~~~~~--~~~fsw~~~a~~y~~lY~~~~~ 488 (489)
T PRK14098 454 DEERWEELVLEAM--ERDFSWKNSAEEYAQLYRELLG 488 (489)
T ss_pred CHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHHhc
Confidence 7888888877663 2899999999999999998863
No 46
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=100.00 E-value=8.1e-33 Score=267.54 Aligned_cols=350 Identities=17% Similarity=0.177 Sum_probs=255.5
Q ss_pred EEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeecc
Q psy15555 54 TVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEAS 133 (488)
Q Consensus 54 rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 133 (488)
||+++++. .||.++....++++|.+. +++|.+++....... .... .. +.+..++..... ..
T Consensus 1 kIl~i~~~---~~g~~~~~~~l~~~L~~~--g~~v~~~~~~~~~~~--~~~~----------~~-~~~~~~~~~~~~-~~ 61 (359)
T cd03808 1 KILHIVTV---DGGLYSFRLPLIKALRAA--GYEVHVVAPPGDELE--ELEA----------LG-VKVIPIPLDRRG-IN 61 (359)
T ss_pred CeeEEEec---chhHHHHHHHHHHHHHhc--CCeeEEEecCCCccc--cccc----------CC-ceEEeccccccc-cC
Confidence 57887766 567889999999999888 555556555533221 0000 12 444444332210 01
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhhh-h-hCCCeeEEEEeCCccchHHHHHHHhhhhcccCc
Q psy15555 134 LYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFS-Y-IGGSKVACYIHYPTITKEMLTRVARRVITHNNS 211 (488)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~~-~-~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~ 211 (488)
.+ ..+.....+.+.+++.+||+++.+..++..+..+. . ....+++...|.....
T Consensus 62 ~~-------~~~~~~~~~~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------------- 117 (359)
T cd03808 62 PF-------KDLKALLRLYRLLRKERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFV----------------- 117 (359)
T ss_pred hH-------hHHHHHHHHHHHHHhcCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchh-----------------
Confidence 11 11222344567788899999987765555443332 2 2445556555543210
Q ss_pred cccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhcc--CCceEEEcCCCCchhhhccCCCCCCCC
Q psy15555 212 QRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNC--QLKTYKLYPPCDTEDLKKITHSKTDGP 289 (488)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~--~~k~~vi~~~~d~~~~~~~~~~~~~~~ 289 (488)
..........+..+++...+.+|.+++.|+.+++.+.+.+.. ..++.+.++++|.+.+.........++
T Consensus 118 ---------~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (359)
T cd03808 118 ---------FTSGGLKRRLYLLLERLALRFTDKVIFQNEDDRDLALKLGIIKKKKTVLIPGSGVDLDRFSPSPEPIPEDD 188 (359)
T ss_pred ---------hccchhHHHHHHHHHHHHHhhccEEEEcCHHHHHHHHHhcCCCcCceEEecCCCCChhhcCccccccCCCC
Confidence 000011334455567778889999999999999999987654 246667778888776654432123567
Q ss_pred eEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHH-HHHhcCCCCcEEEecCCChH
Q psy15555 290 VKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQD-LCKHLSLENNVEFKVNLPYE 368 (488)
Q Consensus 290 ~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~-~~~~~~l~~~v~~~g~~~~~ 368 (488)
++++++|++.+.||++.++++++.+.++. ++++++++|+++... .... .+.+.+..++|.+.|.. +
T Consensus 189 ~~i~~~G~~~~~k~~~~li~~~~~l~~~~-----~~~~l~i~G~~~~~~------~~~~~~~~~~~~~~~v~~~g~~--~ 255 (359)
T cd03808 189 PVFLFVARLLKDKGIDELLEAARILKAKG-----PNVRLLLVGDGDEEN------PAAILEIEKLGLEGRVEFLGFR--D 255 (359)
T ss_pred cEEEEEeccccccCHHHHHHHHHHHHhcC-----CCeEEEEEcCCCcch------hhHHHHHHhcCCcceEEEeecc--c
Confidence 89999999999999999999999998776 799999999987542 1222 35566667899999995 8
Q ss_pred HHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHHHHccC
Q psy15555 369 DMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILHLS 446 (488)
Q Consensus 369 el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~~~ 446 (488)
++.++|+.||++++||..|++|++++|||++|+|||+++.++.. +++.++ .+|++++ |+++++++|.+++. +
T Consensus 256 ~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~~-~~i~~~----~~g~~~~~~~~~~~~~~i~~l~~-~ 329 (359)
T cd03808 256 DVPELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPGCR-EAVIDG----VNGFLVPPGDAEALADAIERLIE-D 329 (359)
T ss_pred cHHHHHHhccEEEecCcccCcchHHHHHHHcCCCEEEecCCCch-hhhhcC----cceEEECCCCHHHHHHHHHHHHh-C
Confidence 99999999999999999999999999999999999999999886 888877 7899876 79999999999998 9
Q ss_pred HHHHHHHHHHHHHHH-hhcCHHHHHHHHH
Q psy15555 447 QDTKTRISQNAVSSV-DRFSMEEFKNGFL 474 (488)
Q Consensus 447 ~~~~~~~~~~a~~~~-~~~s~~~~~~~~~ 474 (488)
++.+.++++++++.+ ++||++.+++++.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 358 (359)
T cd03808 330 PELRARMGQAARKRAEEEFDEEIVVKKLL 358 (359)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 999999999999997 9999999998875
No 47
>PRK10125 putative glycosyl transferase; Provisional
Probab=100.00 E-value=6.5e-33 Score=269.36 Aligned_cols=373 Identities=12% Similarity=0.053 Sum_probs=235.5
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
|||+++...++ .||+|+.+.+|++.+.++|+++.+....+....... .. .. +........++...
T Consensus 1 mkil~i~~~l~-~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~-~~------------~~-~~~~~~~~~~~~~~ 65 (405)
T PRK10125 1 MNILQFNVRLA-EGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESV-SH------------QN-YPQVIKHTPRMTAM 65 (405)
T ss_pred CeEEEEEeeec-CCchhHHHHHHHHHHHhcCCeEEEEEecCCCccccc-cc------------CC-cceEEEecccHHHH
Confidence 89999876655 567999999999999999777776666555332111 00 00 11111111111100
Q ss_pred cCchhHHH-HHHHHHHHHHHHHHh-hhcCCcEEEecCCccc---hhhhhh-------hhCCCeeEEEEeCCccch-----
Q psy15555 133 SLYPYFTL-LGQSIGSMILGVEAL-LSFQPDIYIDTMGYAF---TYPLFS-------YIGGSKVACYIHYPTITK----- 195 (488)
Q Consensus 133 ~~~~~~~~-~~~~~~~~~~~~~~l-~~~~pDiii~~~~~~~---~~~~~~-------~~~~~~~v~~~h~p~~~~----- 195 (488)
......+. -..-+.....+.+++ +.++|||||.+...+. ...+++ ...++|++.++|.....+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~ 145 (405)
T PRK10125 66 ANIALFRLFNRDLFGNFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAF 145 (405)
T ss_pred HHHHHHHhcchhhcchHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCC
Confidence 00000000 011123334455666 6889999997765542 211111 134789999999643211
Q ss_pred -HHHHHHHhhhhcccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCC
Q psy15555 196 -EMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCD 274 (488)
Q Consensus 196 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d 274 (488)
+-+............-..+ ...........+.......+.+.+.++.++++|++.++.+.+.++ ..++.+|+||+|
T Consensus 146 ~~~C~~~~~~c~~Cp~l~~~--~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~~~-~~~i~vI~NGid 222 (405)
T PRK10125 146 TDGCEGWKTGCQKCPTLNNY--PPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYG-PGRCRIINNGID 222 (405)
T ss_pred CcccccccccCCCCCCccCC--CCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHHcC-CCCEEEeCCCcC
Confidence 0000000000000000000 000011111122222233344556678999999999999987666 458999999999
Q ss_pred chhhhcc---C-CCCCCCCeEEEEeecc--CCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHH
Q psy15555 275 TEDLKKI---T-HSKTDGPVKIISVAQF--RPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQD 348 (488)
Q Consensus 275 ~~~~~~~---~-~~~~~~~~~i~~~g~~--~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~ 348 (488)
.+.+... . .....++++++++|+. .+.||.+.+++|+..+. ++++|+++|.++.. .
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l~--------~~~~L~ivG~g~~~--------~-- 284 (405)
T PRK10125 223 MATEAILAELPPVRETQGKPKIAVVAHDLRYDGKTDQQLVREMMALG--------DKIELHTFGKFSPF--------T-- 284 (405)
T ss_pred cccccccccccccccCCCCCEEEEEEeccccCCccHHHHHHHHHhCC--------CCeEEEEEcCCCcc--------c--
Confidence 6432211 1 1123456789999984 36799999999998873 57899999987521 0
Q ss_pred HHHhcCCCCcEEEecCC-ChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccce
Q psy15555 349 LCKHLSLENNVEFKVNL-PYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGF 427 (488)
Q Consensus 349 ~~~~~~l~~~v~~~g~~-~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~ 427 (488)
.+++.++|.. +..++.++|+.||+||+||..|+||++++||||||+|||+++.+|.. |++.+. +|+
T Consensus 285 -------~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG~~-Eiv~~~-----~G~ 351 (405)
T PRK10125 285 -------AGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAAR-EVLQKS-----GGK 351 (405)
T ss_pred -------ccceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCChH-HhEeCC-----cEE
Confidence 2458888876 55789999999999999999999999999999999999999999996 888653 799
Q ss_pred ecC--CHHHHHHHHHHHHccCHHHHHH----HHHHHHHHH-hhcCHHHHHHHHHHHHHHh
Q psy15555 428 LAC--DEVEYAQTIKLILHLSQDTKTR----ISQNAVSSV-DRFSMEEFKNGFLTFTQPL 480 (488)
Q Consensus 428 ~~~--~~~~l~~~i~~ll~~~~~~~~~----~~~~a~~~~-~~~s~~~~~~~~~~~~~~~ 480 (488)
+++ |+++|++.+ +++..++ +.+++++.+ ++||++.+++++.++|+++
T Consensus 352 lv~~~d~~~La~~~------~~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 352 TVSEEEVLQLAQLS------KPEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred EECCCCHHHHHhcc------CHHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 987 999999753 3333333 234577777 8899999999999999864
No 48
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=2.6e-33 Score=272.11 Aligned_cols=352 Identities=18% Similarity=0.155 Sum_probs=248.6
Q ss_pred EEEEeccCCCCC-CCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 54 TVAFFHPYCNAG-GGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 54 rI~~~~~~~~~~-gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
||+++++...+. ||+++.+..++++|.++| ++|.+++......... ... .. . +.....+......
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g--~~v~~~~~~~~~~~~~-~~~---~~--~-----~~~~~~~~~~~~~- 66 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARG--HEVLVIAPGPFRESEG-PAR---VV--P-----VPSVPLPGYPEIR- 66 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCC--CEEEEEeCCchhhccC-CCC---ce--e-----ecccccCcccceE-
Confidence 688887666544 889999999999999985 5555555542211100 000 00 0 0000000000000
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchh--hhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccC
Q psy15555 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTY--PLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNN 210 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~--~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~ 210 (488)
.. +.......+.++..+||+|+.+....... ..+....++|++...|.... .+...
T Consensus 67 ~~----------~~~~~~~~~~~~~~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~------- 124 (364)
T cd03814 67 LA----------LPPRRRVRRLLDAFAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFP-----EYLRY------- 124 (364)
T ss_pred ec----------ccchhhHHHHHHhcCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChH-----HHhhh-------
Confidence 00 00112345566788999887654322211 12233578899988885431 00000
Q ss_pred ccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCC------
Q psy15555 211 SQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHS------ 284 (488)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~------ 284 (488)
............+.+.+.+.+|.+++.|+...+.+.+.+ ..++.++++++|.+.+.+....
T Consensus 125 -----------~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 191 (364)
T cd03814 125 -----------YGLGPLSWLAWAYLRWFHNRADRVLVPSPSLADELRARG--FRRVRLWPRGVDTELFHPRRRDEALRAR 191 (364)
T ss_pred -----------cccchHhHhhHHHHHHHHHhCCEEEeCCHHHHHHHhccC--CCceeecCCCccccccCcccccHHHHHH
Confidence 000111222244556677889999999999999666533 2478899999988766543211
Q ss_pred -CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEec
Q psy15555 285 -KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKV 363 (488)
Q Consensus 285 -~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g 363 (488)
...++++++++|++.+.||++.++++++.+.++ ++++++++|+++.. +.++ +..++|.+.|
T Consensus 192 ~~~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~------~~~~l~i~G~~~~~------~~~~------~~~~~v~~~g 253 (364)
T cd03814 192 LGPPDRPVLLYVGRLAPEKNLEALLDADLPLRRR------PPVRLVIVGDGPAR------ARLE------ARYPNVHFLG 253 (364)
T ss_pred hCCCCCeEEEEEeccccccCHHHHHHHHHHhhhc------CCceEEEEeCCchH------HHHh------ccCCcEEEEe
Confidence 123467899999999999999999999999764 48999999998643 2332 3457899999
Q ss_pred CCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHH
Q psy15555 364 NLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKL 441 (488)
Q Consensus 364 ~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ 441 (488)
.++.+++.++|+.||+++.||..|++|++++|||++|+|||+++.++.. ++++++ .+|++++ |.++++++|.+
T Consensus 254 ~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~~~-~~i~~~----~~g~~~~~~~~~~l~~~i~~ 328 (364)
T cd03814 254 FLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGGPA-DIVTDG----ENGLLVEPGDAEAFAAALAA 328 (364)
T ss_pred ccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCCch-hhhcCC----cceEEcCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999886 888887 7899876 88889999999
Q ss_pred HHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy15555 442 ILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 442 ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~ 478 (488)
++. |++.++++++++++.+++|+|+.+++++.++|+
T Consensus 329 l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 329 LLA-DPELRRRMAARARAEAERRSWEAFLDNLLEAYR 364 (364)
T ss_pred HHc-CHHHHHHHHHHHHHHHhhcCHHHHHHHHHHhhC
Confidence 999 999999999999998889999999999998873
No 49
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=8.2e-33 Score=276.68 Aligned_cols=400 Identities=15% Similarity=0.130 Sum_probs=260.7
Q ss_pred cEEEEeccCCC---CCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHh--hhhccc-------------cc
Q psy15555 53 KTVAFFHPYCN---AGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRA--HQRFNI-------------VL 114 (488)
Q Consensus 53 ~rI~~~~~~~~---~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~-------------~~ 114 (488)
|||++++..+. ..||...++..|.++|+++| ++|.+++...+.......... .....+ ..
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G--~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALG--HDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGV 78 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcC--CeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEE
Confidence 79999886543 37889999999999999995 555555554332211110000 000000 11
Q ss_pred CCCeeEEEEeeccceeecc--Cch--hHHHHHHHHHHHHHHHHHhh--hcCCcEEEecCCccchhhhh-hhhCC---Cee
Q psy15555 115 PDQVINFVYLYRRKFVEAS--LYP--YFTLLGQSIGSMILGVEALL--SFQPDIYIDTMGYAFTYPLF-SYIGG---SKV 184 (488)
Q Consensus 115 ~~~~v~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~l~--~~~pDiii~~~~~~~~~~~~-~~~~~---~~~ 184 (488)
.++ +++..+..+....+. .+. ......++..+.....+.++ ..+|||||.+......++.. +...+ +|+
T Consensus 79 ~~~-v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~~~~~~l~~~~~~~~~~~ 157 (473)
T TIGR02095 79 VEG-VPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTALVPALLKAVYRPNPIKT 157 (473)
T ss_pred ECC-ceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHhhccCCCCCE
Confidence 123 566655544332221 222 11111222222233334443 36899999987545444433 22233 899
Q ss_pred EEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHH-hc--
Q psy15555 185 ACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQL-WN-- 261 (488)
Q Consensus 185 v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-~~-- 261 (488)
+.++|................ .... . ........++. ...+.+..+..+|.++++|+..++.+... ++
T Consensus 158 v~TiH~~~~~g~~~~~~~~~~-~~~~-~------~~~~~~~~~~~-~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~ 228 (473)
T TIGR02095 158 VFTIHNLAYQGVFPADDFSEL-GLPP-E------YFHMEGLEFYG-RVNFLKGGIVYADRVTTVSPTYAREILTPEFGYG 228 (473)
T ss_pred EEEcCCCccCCcCCHHHHHHc-CCCh-H------HcCchhhhcCC-chHHHHHHHHhCCcCeecCHhHHHHhcCCcCCcc
Confidence 999996542110000000000 0000 0 00000000000 11134557789999999999998888652 11
Q ss_pred -------cCCceEEEcCCCCchhhhccCCC--------------------------C--CCCCeEEEEeeccCCCCChHH
Q psy15555 262 -------CQLKTYKLYPPCDTEDLKKITHS--------------------------K--TDGPVKIISVAQFRPEKDHPL 306 (488)
Q Consensus 262 -------~~~k~~vi~~~~d~~~~~~~~~~--------------------------~--~~~~~~i~~~g~~~~~k~~~~ 306 (488)
.+.++.+|+||+|.+.+.+.... . .++.++++++||+.++||++.
T Consensus 229 l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~ 308 (473)
T TIGR02095 229 LDGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVISRLTQQKGVDL 308 (473)
T ss_pred chhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEecCccccChHH
Confidence 23589999999999877653210 0 125789999999999999999
Q ss_pred HHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCC
Q psy15555 307 QLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWN 386 (488)
Q Consensus 307 ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~ 386 (488)
+++|+.++.+ .+++|+|+|.|+ +++.+++++++++.+ +++.+.+..+.+++..+|+.||++++||..
T Consensus 309 li~a~~~l~~-------~~~~lvi~G~g~----~~~~~~l~~~~~~~~--~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~ 375 (473)
T TIGR02095 309 LLAALPELLE-------LGGQLVVLGTGD----PELEEALRELAERYP--GNVRVIIGYDEALAHLIYAGADFILMPSRF 375 (473)
T ss_pred HHHHHHHHHH-------cCcEEEEECCCC----HHHHHHHHHHHHHCC--CcEEEEEcCCHHHHHHHHHhCCEEEeCCCc
Confidence 9999999875 358999999885 144567777777654 578888877888899999999999999999
Q ss_pred CcCCccHHHHHHcCCcEEEeCCCCCccceeccCC--CccccceecC--CHHHHHHHHHHHHc---cCHHHHHHHHHHHHH
Q psy15555 387 EHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDP--ETCRNGFLAC--DEVEYAQTIKLILH---LSQDTKTRISQNAVS 459 (488)
Q Consensus 387 e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~--~~~~~g~~~~--~~~~l~~~i~~ll~---~~~~~~~~~~~~a~~ 459 (488)
|++|++++|||++|+|||+++.+|.. |++.+++ ....+|++++ |+++++++|.+++. .+++.+++|++++.+
T Consensus 376 E~~gl~~lEAma~G~pvI~s~~gg~~-e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~ 454 (473)
T TIGR02095 376 EPCGLTQLYAMRYGTVPIVRRTGGLA-DTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQDPSLWEALQKNAMS 454 (473)
T ss_pred CCcHHHHHHHHHCCCCeEEccCCCcc-ceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 99999999999999999999999997 8886631 0115799876 99999999998775 267888899888753
Q ss_pred HHhhcCHHHHHHHHHHHHHHh
Q psy15555 460 SVDRFSMEEFKNGFLTFTQPL 480 (488)
Q Consensus 460 ~~~~~s~~~~~~~~~~~~~~~ 480 (488)
++|||+++++++.++|+++
T Consensus 455 --~~fsw~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 455 --QDFSWDKSAKQYVELYRSL 473 (473)
T ss_pred --cCCCcHHHHHHHHHHHHhC
Confidence 7899999999999999864
No 50
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=4e-33 Score=270.42 Aligned_cols=334 Identities=14% Similarity=0.083 Sum_probs=237.8
Q ss_pred EEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCC-hhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 54 TVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDAS-PSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 54 rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
||++++++. ..||.++.+..++++|.+. ++++.+++...... ....... .+ +.+...+....
T Consensus 1 kIl~~~~~~-~~GG~~~~~~~l~~~L~~~--~~~v~~i~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~--- 63 (358)
T cd03812 1 KILHIVGTM-NRGGIETFIMNYYRNLDRS--KIQFDFLVTSKEEGDYDDEIEK----------LG-GKIYYIPARKK--- 63 (358)
T ss_pred CEEEEeCCC-CCccHHHHHHHHHHhcCcc--ceEEEEEEeCCCCcchHHHHHH----------cC-CeEEEecCCCc---
Confidence 688988887 6778999999999999977 55555555443221 1111111 11 33332221111
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhh-hhhhhCCCee-EEEEeCCccchHHHHHHHhhhhcccC
Q psy15555 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP-LFSYIGGSKV-ACYIHYPTITKEMLTRVARRVITHNN 210 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~-~~~~~~~~~~-v~~~h~p~~~~d~~~~~~~~~~~~~~ 210 (488)
.. +.......+.+++.+||+||.+......+. .+....+.+. +.+.|......
T Consensus 64 ---~~-------~~~~~~~~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------- 118 (358)
T cd03812 64 ---NP-------LKYFKKLYKLIKKNKYDIVHVHGSSASGFILLAAKKAGVKVRIAHSHNTSDSH--------------- 118 (358)
T ss_pred ---cH-------HHHHHHHHHHHhcCCCCEEEEeCcchhHHHHHHHhhCCCCeEEEEeccccccc---------------
Confidence 00 111123445677889999987764332222 2222344454 45555432100
Q ss_pred ccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCC-------
Q psy15555 211 SQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITH------- 283 (488)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~------- 283 (488)
..... ... ...+.+...+.+|.+++.|+..++.+.+. ..+.++.+++|++|.+.+.....
T Consensus 119 -------~~~~~--~~~---~~~~~~~~~~~~~~~i~~s~~~~~~~~~~-~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~ 185 (358)
T cd03812 119 -------DKKKK--ILK---YKVLRKLINRLATDYLACSEEAGKWLFGK-VKNKKFKVIPNGIDLEKFIFNEEIRKKRRE 185 (358)
T ss_pred -------cccch--hhH---HHHHHHHHHhcCCEEEEcCHHHHHHHHhC-CCcccEEEEeccCcHHHcCCCchhhhHHHH
Confidence 00000 000 03344556788999999999999998775 33568999999999876644321
Q ss_pred -CCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEe
Q psy15555 284 -SKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFK 362 (488)
Q Consensus 284 -~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~ 362 (488)
....++++++++|++.+.||++.+++|+..+.++. ++++++|+|.++.. +.+++.+++.++.++|.+.
T Consensus 186 ~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~-----~~~~l~ivG~g~~~------~~~~~~~~~~~~~~~v~~~ 254 (358)
T cd03812 186 LGILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKN-----PNAKLLLVGDGELE------EEIKKKVKELGLEDKVIFL 254 (358)
T ss_pred cCCCCCCEEEEEEeccccccChHHHHHHHHHHHHhC-----CCeEEEEEeCCchH------HHHHHHHHhcCCCCcEEEe
Confidence 13356789999999999999999999999999887 89999999998643 6788888889999999999
Q ss_pred cCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC-CHHHHHHHHHH
Q psy15555 363 VNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKL 441 (488)
Q Consensus 363 g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ 441 (488)
|.. +++.++|+.||+++.||..|++|++++|||++|+|||+++.++.. +++.++ ..++..+ ++++++++|.+
T Consensus 255 g~~--~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~-~~i~~~----~~~~~~~~~~~~~a~~i~~ 327 (358)
T cd03812 255 GVR--NDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITKE-VDLTDL----VKFLSLDESPEIWAEEILK 327 (358)
T ss_pred ccc--CCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCchh-hhhccC----ccEEeCCCCHHHHHHHHHH
Confidence 984 899999999999999999999999999999999999999999986 777765 3344444 67999999999
Q ss_pred HHccCHHHHHHHHHHHHHHH
Q psy15555 442 ILHLSQDTKTRISQNAVSSV 461 (488)
Q Consensus 442 ll~~~~~~~~~~~~~a~~~~ 461 (488)
+++ +++.+++++..+....
T Consensus 328 l~~-~~~~~~~~~~~~~~~~ 346 (358)
T cd03812 328 LKS-EDRRERSSESIKKKGL 346 (358)
T ss_pred HHh-Ccchhhhhhhhhhccc
Confidence 999 9999998888776544
No 51
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=100.00 E-value=1e-32 Score=268.57 Aligned_cols=361 Identities=18% Similarity=0.232 Sum_probs=256.1
Q ss_pred EEEEeccCC-CCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 54 TVAFFHPYC-NAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 54 rI~~~~~~~-~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
||++++..+ +..||++..+..++++|.++| ++|.+++........... . .. +........
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g--~~v~v~~~~~~~~~~~~~-~----------~~-~~~~~~~~~----- 61 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRG--HEVYVVAPSYPGAPEEEE-V----------VV-VRPFRVPTF----- 61 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcC--CeEEEEeCCCCCCCcccc-c----------cc-ccccccccc-----
Confidence 577777554 456778899999999999985 455555443222111000 0 00 000000000
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhh--hhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccC
Q psy15555 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP--LFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNN 210 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~--~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~ 210 (488)
...... ..+.......+.++..+||+|+.+..+..... ......++|++...|.... ++....
T Consensus 62 -~~~~~~---~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~--------- 126 (374)
T cd03817 62 -KYPDFR---LPLPIPRALIIILKELGPDIVHTHTPFSLGLLGLRVARKLGIPVVATYHTMYE--DYTHYV--------- 126 (374)
T ss_pred -hhhhhh---ccccHHHHHHHHHhhcCCCEEEECCchhhhhHHHHHHHHcCCCEEEEecCCHH--HHHHHH---------
Confidence 000000 00111122444577889999987764443222 2223568899998886532 111000
Q ss_pred ccccccCccchhhhHHHHHHHH-HHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCC------
Q psy15555 211 SQRVANNPILTSFKLFYYKVFA-LLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITH------ 283 (488)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~------ 283 (488)
............ .+++..++.+|.++++|+.+++.+.+. +...++.+++|++|...+.+...
T Consensus 127 ----------~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~~-~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 195 (374)
T cd03817 127 ----------PLGRLLARAVVRRKLSRRFYNRCDAVIAPSEKIADLLREY-GVKRPIEVIPTGIDLDRFEPVDGDDERRK 195 (374)
T ss_pred ----------hcccchhHHHHHHHHHHHHhhhCCEEEeccHHHHHHHHhc-CCCCceEEcCCccchhccCccchhHHHHh
Confidence 000001111111 466778899999999999999998874 44557899999999877655432
Q ss_pred -CCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEe
Q psy15555 284 -SKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFK 362 (488)
Q Consensus 284 -~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~ 362 (488)
...+++++++++|++.+.|+++.++++++.+.++. ++++++++|+++. .+++++.+++.++.++|.++
T Consensus 196 ~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~-----~~~~l~i~G~~~~------~~~~~~~~~~~~~~~~v~~~ 264 (374)
T cd03817 196 LGIPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEE-----PDVKLVIVGDGPE------REELEELARELGLADRVIFT 264 (374)
T ss_pred cCCCCCCeEEEEEeeeecccCHHHHHHHHHHHHHhC-----CCeEEEEEeCCch------HHHHHHHHHHcCCCCcEEEe
Confidence 22356789999999999999999999999998876 7999999999853 26788888888888999999
Q ss_pred cCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC-CHHHHHHHHHH
Q psy15555 363 VNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKL 441 (488)
Q Consensus 363 g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ 441 (488)
|.++.+++..+|+.||+++.||..|++|++++|||++|+|||+++.++.. +++.++ .+|++++ +.+++++++.+
T Consensus 265 g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~~~~-~~i~~~----~~g~~~~~~~~~~~~~i~~ 339 (374)
T cd03817 265 GFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAPGLP-DLVADG----ENGFLFPPGDEALAEALLR 339 (374)
T ss_pred ccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCCCChh-hheecC----ceeEEeCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999886 899887 7899987 33399999999
Q ss_pred HHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q psy15555 442 ILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQP 479 (488)
Q Consensus 442 ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~ 479 (488)
+++ +++.++++++++++.+++++ ..+++.+++++
T Consensus 340 l~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 373 (374)
T cd03817 340 LLQ-DPELRRRLSKNAEESAEKFS---FAKKVEKLYEE 373 (374)
T ss_pred HHh-ChHHHHHHHHHHHHHHHHHH---HHHHHHHHHhc
Confidence 999 99999999999999986655 55666666654
No 52
>PLN00142 sucrose synthase
Probab=100.00 E-value=1.1e-32 Score=278.13 Aligned_cols=291 Identities=17% Similarity=0.172 Sum_probs=212.0
Q ss_pred cCCcEEEecCCccchhh-hhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHHHH--HHH
Q psy15555 158 FQPDIYIDTMGYAFTYP-LFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVF--ALL 234 (488)
Q Consensus 158 ~~pDiii~~~~~~~~~~-~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 234 (488)
.+||+||.+....+... .++...++|.+.+.|.-.... ... .+.........+ +.. ...
T Consensus 407 ~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~HsL~k~K-------~~~----------~~~~~~~~e~~y-~~~~r~~a 468 (815)
T PLN00142 407 GKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHALEKTK-------YPD----------SDIYWKKFDDKY-HFSCQFTA 468 (815)
T ss_pred CCCCEEEECCccHHHHHHHHHHHhCCCEEEEcccchhhh-------ccc----------cCCcccccchhh-hhhhchHH
Confidence 46999998864333333 333356999999888432100 000 000000000111 111 113
Q ss_pred HHHHhcccCEEEEcChhHHHHH----H---HHh------------cc---CCceEEEcCCCCchhhhccCCC--------
Q psy15555 235 YSHVGKYSDIIMVNSSWTEEHV----I---QLW------------NC---QLKTYKLYPPCDTEDLKKITHS-------- 284 (488)
Q Consensus 235 ~~~~~~~~d~ii~~s~~~~~~~----~---~~~------------~~---~~k~~vi~~~~d~~~~~~~~~~-------- 284 (488)
+..+++.||.|++.|......+ . ... +. ..++.++++|+|...|.+....
T Consensus 469 E~~a~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~rl~~l~ 548 (815)
T PLN00142 469 DLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQKRLTSLH 548 (815)
T ss_pred HHHHHHhhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHhhHHhhc
Confidence 5567889999999997765321 1 110 11 3488999999998876532200
Q ss_pred --------------------CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCC---Cc--
Q psy15555 285 --------------------KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNE---ED-- 339 (488)
Q Consensus 285 --------------------~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~---~~-- 339 (488)
...++++++++||+.+.||++.+++|+.++.+.. ++++|+|+|++++. .+
T Consensus 549 n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~-----~~~~LVIVGgg~d~~~s~d~e 623 (815)
T PLN00142 549 PSIEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLR-----ELVNLVVVGGFIDPSKSKDRE 623 (815)
T ss_pred ccchhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhC-----CCcEEEEEECCccccccccHH
Confidence 1235678999999999999999999999987665 68999999987321 11
Q ss_pred -HHHHHHHHHHHHhcCCCCcEEEecCC----ChHHHHHHHHh-CcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCcc
Q psy15555 340 -EVCVKDMQDLCKHLSLENNVEFKVNL----PYEDMKKEFSE-GLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKM 413 (488)
Q Consensus 340 -~~~~~~l~~~~~~~~l~~~v~~~g~~----~~~el~~~~~~-ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~ 413 (488)
.+..+++.++++++++.++|.|+|.. +.+++..+++. +|+|+.||..|+||++++|||+||+|||+++.||+.
T Consensus 624 e~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG~~- 702 (815)
T PLN00142 624 EIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGGPA- 702 (815)
T ss_pred HHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCCHH-
Confidence 12235688899999999999998853 44678887774 689999999999999999999999999999999997
Q ss_pred ceeccCCCccccceecC--CHHHHHHHHHHH----HccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHH
Q psy15555 414 DIVIEDPETCRNGFLAC--DEVEYAQTIKLI----LHLSQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFT 477 (488)
Q Consensus 414 eiv~~~~~~~~~g~~~~--~~~~l~~~i~~l----l~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~ 477 (488)
|++.++ .+|++++ |+++++++|.++ +. |++.+++|+++|++.+ ++|||+.++++++++.
T Consensus 703 EIV~dG----~tG~LV~P~D~eaLA~aI~~lLekLl~-Dp~lr~~mg~~Ar~rv~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 703 EIIVDG----VSGFHIDPYHGDEAANKIADFFEKCKE-DPSYWNKISDAGLQRIYECYTWKIYAERLLTLG 768 (815)
T ss_pred HHhcCC----CcEEEeCCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999998 9999986 899999998765 46 9999999999999998 9999999999999875
No 53
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=100.00 E-value=1.3e-32 Score=264.40 Aligned_cols=327 Identities=17% Similarity=0.137 Sum_probs=236.0
Q ss_pred cEEEEeccCCC-----CCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeecc
Q psy15555 53 KTVAFFHPYCN-----AGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRR 127 (488)
Q Consensus 53 ~rI~~~~~~~~-----~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 127 (488)
|||+++.+.+. ..||.++.+..++++|.++| ++|.+++...+....... ... +..
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g--~~V~v~~~~~~~~~~~~~----------------~~~--~~~ 60 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARG--HEVTLFASGDSKTAAPLV----------------PVV--PEP 60 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcC--ceEEEEecCCCCccccee----------------ecc--CCC
Confidence 89999987652 57789999999999999984 555555544222111000 000 000
Q ss_pred ceeeccCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhc
Q psy15555 128 KFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVIT 207 (488)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~ 207 (488)
..... . ..............+++++.+||+||.+...+... .....+.|++...|......
T Consensus 61 ~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~--~~~~~~~~~v~~~h~~~~~~------------ 121 (335)
T cd03802 61 LRLDA--P---GRDRAEAEALALAERALAAGDFDIVHNHSLHLPLP--FARPLPVPVVTTLHGPPDPE------------ 121 (335)
T ss_pred ccccc--c---hhhHhhHHHHHHHHHHHhcCCCCEEEecCcccchh--hhcccCCCEEEEecCCCCcc------------
Confidence 00000 0 00011122234456778889999999887555443 33367889999888654211
Q ss_pred ccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCCCCC
Q psy15555 208 HNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTD 287 (488)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~~~~ 287 (488)
.. . ........+.+++.|+..++.+... .++.+++|++|.+.+.+. ..
T Consensus 122 ------------~~---~---------~~~~~~~~~~~~~~s~~~~~~~~~~----~~~~vi~ngvd~~~~~~~----~~ 169 (335)
T cd03802 122 ------------LL---K---------LYYAARPDVPFVSISDAQRRPWPPL----PWVATVHNGIDLDDYPFR----GP 169 (335)
T ss_pred ------------cc---h---------HHHhhCcCCeEEEecHHHHhhcccc----cccEEecCCcChhhCCCC----CC
Confidence 00 0 1123456789999999988877653 578999999998877652 23
Q ss_pred CCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcC-CCCcEEEecCCC
Q psy15555 288 GPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLS-LENNVEFKVNLP 366 (488)
Q Consensus 288 ~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~-l~~~v~~~g~~~ 366 (488)
++..++++|++.+.||.+.+++++++ .+++++++|.++.. +.+....++.. +.++|++.|+++
T Consensus 170 ~~~~i~~~Gr~~~~Kg~~~li~~~~~----------~~~~l~i~G~~~~~------~~~~~~~~~~~~~~~~v~~~G~~~ 233 (335)
T cd03802 170 KGDYLLFLGRISPEKGPHLAIRAARR----------AGIPLKLAGPVSDP------DYFYREIAPELLDGPDIEYLGEVG 233 (335)
T ss_pred CCCEEEEEEeeccccCHHHHHHHHHh----------cCCeEEEEeCCCCH------HHHHHHHHHhcccCCcEEEeCCCC
Confidence 56789999999999999999998653 47899999998643 33333333332 467899999999
Q ss_pred hHHHHHHHHhCcEEEEcCC-CCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHHcc
Q psy15555 367 YEDMKKEFSEGLIGLHAMW-NEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILHL 445 (488)
Q Consensus 367 ~~el~~~~~~ad~~v~~s~-~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~~ 445 (488)
++++.++|+.+|++++||. .|++|++++|||++|+|||+++.++.. |++.++ .+|++++++++++++|.++..
T Consensus 234 ~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~~-e~i~~~----~~g~l~~~~~~l~~~l~~l~~- 307 (335)
T cd03802 234 GAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGAVP-EVVEDG----VTGFLVDSVEELAAAVARADR- 307 (335)
T ss_pred HHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCCch-hheeCC----CcEEEeCCHHHHHHHHHHHhc-
Confidence 9999999999999999996 699999999999999999999999997 999887 899999999999999999876
Q ss_pred CHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHH
Q psy15555 446 SQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 446 ~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~ 478 (488)
.+ .+++++.+ ++|||+.+++++.++|+
T Consensus 308 ~~------~~~~~~~~~~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 308 LD------RAACRRRAERRFSAARMVDDYLALYR 335 (335)
T ss_pred cH------HHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 32 23456666 99999999999999874
No 54
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=9.6e-33 Score=277.46 Aligned_cols=396 Identities=15% Similarity=0.106 Sum_probs=256.2
Q ss_pred EEEEeccCCC---CCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhh---------------hcccccC
Q psy15555 54 TVAFFHPYCN---AGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ---------------RFNIVLP 115 (488)
Q Consensus 54 rI~~~~~~~~---~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~ 115 (488)
||+++++... ..||...++..|+++|+++ |++|.+++...+............ .......
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~--G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKL--GHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPV 78 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHC--CCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEe
Confidence 5888876543 4788999999999999999 555555555433222111100000 0000001
Q ss_pred CCeeEEEEeeccceeeccC------chhHHHHHHHHHHHHHHHHHhhh--cCCcEEEecCCccchhhhh-hhh------C
Q psy15555 116 DQVINFVYLYRRKFVEASL------YPYFTLLGQSIGSMILGVEALLS--FQPDIYIDTMGYAFTYPLF-SYI------G 180 (488)
Q Consensus 116 ~~~v~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~--~~pDiii~~~~~~~~~~~~-~~~------~ 180 (488)
.+ +.+..++.+.+..+.. ........++..+.....+.+++ .+|||||.+......++.. +.. .
T Consensus 79 ~g-v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~~~~~~l~~~~~~~~~~ 157 (476)
T cd03791 79 DG-VPVYFLDNPDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTGLVPALLKEKYADPFFK 157 (476)
T ss_pred CC-ceEEEEcChHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHHHHHHHHHHhhccccCC
Confidence 22 5566555544332211 11111111122222333444544 7999999887544444432 222 3
Q ss_pred CCeeEEEEeCCccchHH-HHHHHhhhhcccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHH
Q psy15555 181 GSKVACYIHYPTITKEM-LTRVARRVITHNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQL 259 (488)
Q Consensus 181 ~~~~v~~~h~p~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~ 259 (488)
++|+++++|........ ............ .........+.....+++..+..+|.++++|+..++.+.+.
T Consensus 158 ~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~ 228 (476)
T cd03791 158 NIKTVFTIHNLAYQGVFPLEALEDLGLPWE---------ELFHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTP 228 (476)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHcCCCcc---------chhhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCC
Confidence 78999999975321100 000000000000 00000000000011245567788999999999999888641
Q ss_pred ---------h-ccCCceEEEcCCCCchhhhccCCCC----------------------------CCCCeEEEEeeccCCC
Q psy15555 260 ---------W-NCQLKTYKLYPPCDTEDLKKITHSK----------------------------TDGPVKIISVAQFRPE 301 (488)
Q Consensus 260 ---------~-~~~~k~~vi~~~~d~~~~~~~~~~~----------------------------~~~~~~i~~~g~~~~~ 301 (488)
+ ....++.+|+||+|.+.+.+..... .++.++++++||+.+.
T Consensus 229 ~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~ 308 (476)
T cd03791 229 EFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQ 308 (476)
T ss_pred CCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEeecccc
Confidence 1 1235899999999988776543210 2567899999999999
Q ss_pred CChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEE
Q psy15555 302 KDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGL 381 (488)
Q Consensus 302 k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v 381 (488)
||++.+++|+.++.++ +++|+++|.++. ++.+++++++++. .+++.+.+..+.+++..+|+.||+++
T Consensus 309 Kg~~~li~a~~~l~~~-------~~~lvi~G~g~~----~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~aDv~l 375 (476)
T cd03791 309 KGIDLLLEALPELLEL-------GGQLVILGSGDP----EYEEALRELAARY--PGRVAVLIGYDEALAHLIYAGADFFL 375 (476)
T ss_pred ccHHHHHHHHHHHHHc-------CcEEEEEecCCH----HHHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHhCCEEE
Confidence 9999999999998763 589999998842 3446677776665 46787766667777889999999999
Q ss_pred EcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCC---ccccceecC--CHHHHHHHHHHHHc--cCHHHHHHHH
Q psy15555 382 HAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPE---TCRNGFLAC--DEVEYAQTIKLILH--LSQDTKTRIS 454 (488)
Q Consensus 382 ~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~---~~~~g~~~~--~~~~l~~~i~~ll~--~~~~~~~~~~ 454 (488)
+||..|++|++.+|||++|+|||+++.+|.. |++.++ . +..+|++++ |+++++++|.++++ .+++.+.+++
T Consensus 376 ~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~-e~v~~~-~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~ 453 (476)
T cd03791 376 MPSRFEPCGLTQMYAMRYGTVPIVRATGGLA-DTVIDY-NEDTGEGTGFVFEGYNADALLAALRRALALYRDPEAWRKLQ 453 (476)
T ss_pred CCCCCCCCcHHHHHHhhCCCCCEECcCCCcc-ceEeCC-cCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 9999999999999999999999999999997 888887 1 012899986 89999999999874 1567777777
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHH
Q psy15555 455 QNAVSSVDRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 455 ~~a~~~~~~~s~~~~~~~~~~~~~ 478 (488)
+++.+ +.|||+.+++++.++|+
T Consensus 454 ~~~~~--~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 454 RNAMA--QDFSWDRSAKEYLELYR 475 (476)
T ss_pred HHHhc--cCCChHHHHHHHHHHHh
Confidence 76654 67999999999999986
No 55
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=100.00 E-value=2.7e-32 Score=265.46 Aligned_cols=362 Identities=18% Similarity=0.206 Sum_probs=261.1
Q ss_pred EEEeccCCCC--CCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 55 VAFFHPYCNA--GGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 55 I~~~~~~~~~--~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
|+++++..+. .||+++.+..++++|.+.+ ++|.+++................... . ..........
T Consensus 1 iLii~~~~p~~~~~g~~~~~~~~~~~l~~~g--~~v~v~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~-- 68 (377)
T cd03798 1 ILVISSLYPPPNNGGGGIFVKELARALAKRG--VEVTVLAPGPWGPKLLDLLKGRLVGV-------E-RLPVLLPVVP-- 68 (377)
T ss_pred CeEeccCCCCCCCchHHHHHHHHHHHHHHCC--CceEEEecCCCCCCchhhcccccccc-------c-ccccCcchhh--
Confidence 4566666665 5789999999999999885 45555554432221111100000000 0 0000000000
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhh--hcCCcEEEecCCccchhhhh--hhhCCCeeEEEEeCCccchHHHHHHHhhhhcc
Q psy15555 133 SLYPYFTLLGQSIGSMILGVEALL--SFQPDIYIDTMGYAFTYPLF--SYIGGSKVACYIHYPTITKEMLTRVARRVITH 208 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~--~~~pDiii~~~~~~~~~~~~--~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~ 208 (488)
... .............+.++ ..+||+|+.+..++...... ....++|++...|......
T Consensus 69 -~~~---~~~~~~~~~~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~------------- 131 (377)
T cd03798 69 -LLK---GPLLYLLAARALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNL------------- 131 (377)
T ss_pred -ccc---cchhHHHHHHHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhcc-------------
Confidence 000 00111122234556777 88999988775444333222 2244679999998654211
Q ss_pred cCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCC-----
Q psy15555 209 NNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITH----- 283 (488)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~----- 283 (488)
.... .......+..++.+|.+++.|+.+++.+.+.+....++.+++|++|...+.+...
T Consensus 132 -----------~~~~-----~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 195 (377)
T cd03798 132 -----------LPRK-----RLLRALLRRALRRADAVIAVSEALADELKALGIDPEKVTVIPNGVDTERFSPADRAEARK 195 (377)
T ss_pred -----------cCch-----hhHHHHHHHHHhcCCeEEeCCHHHHHHHHHhcCCCCceEEcCCCcCcccCCCcchHHHHh
Confidence 0000 0233455567789999999999999999987544568999999999877655432
Q ss_pred -CCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEe
Q psy15555 284 -SKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFK 362 (488)
Q Consensus 284 -~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~ 362 (488)
....+++.++++|++.+.||++.++++++.+.++. ++++++++|.++.. +.+++.+++.++.++|.+.
T Consensus 196 ~~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~-----~~~~l~i~g~~~~~------~~~~~~~~~~~~~~~v~~~ 264 (377)
T cd03798 196 LGLPEDKKVILFVGRLVPRKGIDYLIEALARLLKKR-----PDVHLVIVGDGPLR------EALEALAAELGLEDRVTFL 264 (377)
T ss_pred ccCCCCceEEEEeccCccccCHHHHHHHHHHHHhcC-----CCeEEEEEcCCcch------HHHHHHHHhcCCcceEEEe
Confidence 23346789999999999999999999999998776 79999999988643 6677888888888999999
Q ss_pred cCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHH
Q psy15555 363 VNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIK 440 (488)
Q Consensus 363 g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~ 440 (488)
|+++++|+.++|+.||+++.||..|++|.+++|||++|+|||+++.++.. +++.++ .+|++++ |+++++++|.
T Consensus 265 g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~~~-~~~~~~----~~g~~~~~~~~~~l~~~i~ 339 (377)
T cd03798 265 GAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVGGIP-EIITDG----ENGLLVPPGDPEALAEAIL 339 (377)
T ss_pred CCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCCChH-HHhcCC----cceeEECCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999886 888887 7788876 9999999999
Q ss_pred HHHccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHh
Q psy15555 441 LILHLSQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQPL 480 (488)
Q Consensus 441 ~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~~~ 480 (488)
++++ +++. ++++++++.+ ++|||+.+++++.++++++
T Consensus 340 ~~~~-~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l 377 (377)
T cd03798 340 RLLA-DPWL--RLGRAARRRVAERFSWENVAERLLELYREV 377 (377)
T ss_pred HHhc-CcHH--HHhHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 9998 7776 6777787777 9999999999999998763
No 56
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=100.00 E-value=1.1e-31 Score=263.02 Aligned_cols=372 Identities=18% Similarity=0.212 Sum_probs=257.2
Q ss_pred EEEEeccCCC-CCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 54 TVAFFHPYCN-AGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 54 rI~~~~~~~~-~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
||+++.+... ..||.++.+..++++|.++| ++|.+++............. ........ +.+..++.......
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g--~~v~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~ 73 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRG--HEVTVITGSPNYPSGKIYKG----YKREEVDG-VRVHRVPLPPYKKN 73 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCC--ceEEEEecCCCccccccccc----ceEEecCC-eEEEEEecCCCCcc
Confidence 5788876654 44778899999999999984 55555554432221100000 00011122 44544443322211
Q ss_pred cCchhHHHHHHHHHHHHHHHHHh--hhcCCcEEEecCC-ccchhh--hhhhhCCCeeEEEEeCCccchHHHHHHHhhhhc
Q psy15555 133 SLYPYFTLLGQSIGSMILGVEAL--LSFQPDIYIDTMG-YAFTYP--LFSYIGGSKVACYIHYPTITKEMLTRVARRVIT 207 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l--~~~~pDiii~~~~-~~~~~~--~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~ 207 (488)
..+.+ ....+.........+ +..+||+|+.+.. ...... ..+...++|++.++|...... ...
T Consensus 74 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~------~~~--- 141 (394)
T cd03794 74 GLLKR---LLNYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPES------AVA--- 141 (394)
T ss_pred chHHH---HHhhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchh------HHH---
Confidence 11111 111111122222333 4788999887752 222222 222244789999888532111 000
Q ss_pred ccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCC----
Q psy15555 208 HNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITH---- 283 (488)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~---- 283 (488)
. ..........+....+++..++.+|.++++|+.+++.+........++.+++|+++...+.+...
T Consensus 142 ---------~-~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 211 (394)
T cd03794 142 ---------L-GLLKNGSLLYRLLRKLERLIYRRADAIVVISPGMREYLVRRGVPPEKISVIPNGVDLELFKPPPADESL 211 (394)
T ss_pred ---------c-cCccccchHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHhcCCCcCceEEcCCCCCHHHcCCccchhhh
Confidence 0 00111112234455677788899999999999999999854444568999999999876655431
Q ss_pred ---CCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEE
Q psy15555 284 ---SKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVE 360 (488)
Q Consensus 284 ---~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~ 360 (488)
....++.+++++|++...||++.+++++.++.+. ++++++++|.++.. +.+++.+...++ ++|.
T Consensus 212 ~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~------~~~~l~i~G~~~~~------~~~~~~~~~~~~-~~v~ 278 (394)
T cd03794 212 RKELGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR------PDIRFLIVGDGPEK------EELKELAKALGL-DNVT 278 (394)
T ss_pred hhccCCCCcEEEEEecCcccccCHHHHHHHHHHHhhc------CCeEEEEeCCcccH------HHHHHHHHHcCC-CcEE
Confidence 1335678999999999999999999999999764 58999999998643 566666666664 5899
Q ss_pred EecCCChHHHHHHHHhCcEEEEcCCCCcC-----CccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHH
Q psy15555 361 FKVNLPYEDMKKEFSEGLIGLHAMWNEHF-----GIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEV 433 (488)
Q Consensus 361 ~~g~~~~~el~~~~~~ad~~v~~s~~e~~-----g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~ 433 (488)
++|.++.+++.++|+.||+++.||..|++ |.+++|||++|+|||+++.++.. +++.++ .+|++++ |++
T Consensus 279 ~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~-~~~~~~----~~g~~~~~~~~~ 353 (394)
T cd03794 279 FLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESA-ELVEEA----GAGLVVPPGDPE 353 (394)
T ss_pred EeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCch-hhhccC----CcceEeCCCCHH
Confidence 99999999999999999999999987765 66789999999999999999986 888776 7888876 899
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHH-hhcCHHHHHHHH
Q psy15555 434 EYAQTIKLILHLSQDTKTRISQNAVSSV-DRFSMEEFKNGF 473 (488)
Q Consensus 434 ~l~~~i~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~ 473 (488)
+++++|.+++. |++.++++++++++.+ ++|||+.+++++
T Consensus 354 ~l~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 393 (394)
T cd03794 354 ALAAAILELLD-DPEERAEMGENGRRYVEEKFSREKLAERL 393 (394)
T ss_pred HHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhhcHHHHHHhc
Confidence 99999999998 9999999999999999 699999999876
No 57
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=100.00 E-value=9.7e-32 Score=260.45 Aligned_cols=349 Identities=17% Similarity=0.168 Sum_probs=243.7
Q ss_pred EEEEeccCCCCC--CCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceee
Q psy15555 54 TVAFFHPYCNAG--GGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVE 131 (488)
Q Consensus 54 rI~~~~~~~~~~--gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 131 (488)
||+++.+..... ||+++++..++++|.+++++ |.+++............ .. .............
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~--v~v~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~ 66 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHE--VAVLTAGEDPPRQDKEV-----------IG-VVVYGRPIDEVLR 66 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCc--eEEEeCCCCCCCccccc-----------cc-ceeeccccccccC
Confidence 688887776644 78999999999999988544 44444432221110000 00 1111100000000
Q ss_pred ccC-ch-hHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhh--hhhCCCeeEEEEeCCccchHHHHHHHhhhhc
Q psy15555 132 ASL-YP-YFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLF--SYIGGSKVACYIHYPTITKEMLTRVARRVIT 207 (488)
Q Consensus 132 ~~~-~~-~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~--~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~ 207 (488)
... .. ................+.+++.+||+|+.+.......... ....++|++...|......
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~hd~~~~~------------ 134 (359)
T cd03823 67 SALPRDLFHLSDYDNPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRGIPIVLTLHDYWLIC------------ 134 (359)
T ss_pred CCchhhhhHHHhccCHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHhcCCCEEEEEeeeeeec------------
Confidence 000 00 0001111122234466778889999998776432222221 2245789999888542100
Q ss_pred ccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCCCCC
Q psy15555 208 HNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTD 287 (488)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~~~~ 287 (488)
.... ......|.+++.|+..++.+.+.+..+.++.+++|++|...+.+.......
T Consensus 135 --------------~~~~-----------~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~vi~n~~~~~~~~~~~~~~~~ 189 (359)
T cd03823 135 --------------PRQG-----------LFKKGGDAVIAPSRFLLDRYVANGLFAEKISVIRNGIDLDRAKRPRRAPPG 189 (359)
T ss_pred --------------chhh-----------hhccCCCEEEEeCHHHHHHHHHcCCCccceEEecCCcChhhccccccCCCC
Confidence 0000 011223999999999999999876555689999999998877654432345
Q ss_pred CCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCCh
Q psy15555 288 GPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPY 367 (488)
Q Consensus 288 ~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 367 (488)
++++++++|++.+.||++.++++++.+.+ ++++++++|.++.. ....... +..++|.+.|+++.
T Consensus 190 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~-------~~~~l~i~G~~~~~------~~~~~~~---~~~~~v~~~g~~~~ 253 (359)
T cd03823 190 GRLRFGFIGQLTPHKGVDLLLEAFKRLPR-------GDIELVIVGNGLEL------EEESYEL---EGDPRVEFLGAYPQ 253 (359)
T ss_pred CceEEEEEecCccccCHHHHHHHHHHHHh-------cCcEEEEEcCchhh------hHHHHhh---cCCCeEEEeCCCCH
Confidence 67899999999999999999999999865 38899999998643 1111111 44678999999999
Q ss_pred HHHHHHHHhCcEEEEcCC-CCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 368 EDMKKEFSEGLIGLHAMW-NEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 368 ~el~~~~~~ad~~v~~s~-~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
+++..+|+.||+++.||. .|++|++++|||++|+|||+++.++.. +++.++ .+|++++ |.+++++++.++++
T Consensus 254 ~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~-e~i~~~----~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 254 EEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIGGMA-ELVRDG----VNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred HHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCCCHH-HHhcCC----CcEEEECCCCHHHHHHHHHHHHh
Confidence 999999999999999996 799999999999999999999998886 888887 7899876 79999999999999
Q ss_pred cCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy15555 445 LSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 445 ~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~ 478 (488)
+++.++++++++++.... +.+++++.++|+
T Consensus 329 -~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 358 (359)
T cd03823 329 -DPDLLERLRAGIEPPRSI---EDQAEEYLKLYR 358 (359)
T ss_pred -ChHHHHHHHHhHHHhhhH---HHHHHHHHHHhh
Confidence 999999999999866533 888888888875
No 58
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=100.00 E-value=6.2e-32 Score=260.60 Aligned_cols=339 Identities=21% Similarity=0.285 Sum_probs=247.7
Q ss_pred EEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeecc
Q psy15555 54 TVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEAS 133 (488)
Q Consensus 54 rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 133 (488)
||+++++... .||+++++..++++|.+.++++.++.......... ....... . .........
T Consensus 1 kIl~~~~~~~-~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~--~~~~~~~--------~-~~~~~~~~~------ 62 (353)
T cd03811 1 KILFVIPSLG-GGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLE--LLPSNVK--------L-IPVRVLKLK------ 62 (353)
T ss_pred CeEEEeeccc-CCCcchhHHHHHHHHHhcCceEEEEEcCCCCcccc--ccccchh--------h-hceeeeecc------
Confidence 6888887766 67799999999999988854444444333321110 0000000 0 000000000
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCC-ccchhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCcc
Q psy15555 134 LYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMG-YAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQ 212 (488)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~-~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~ 212 (488)
... .........+.++..+||+++.+.. ++..+..+....++|++.++|......
T Consensus 63 ~~~-------~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------- 118 (353)
T cd03811 63 SLR-------DLLAILRLRRLLRKEKPDVVISHLTTTPNVLALLAARLGTKLIVWEHNSLSLE----------------- 118 (353)
T ss_pred ccc-------chhHHHHHHHHHHhcCCCEEEEcCccchhHHHHHHhhcCCceEEEEcCcchhh-----------------
Confidence 000 0111234566778889999987765 444444333223689999999654211
Q ss_pred ccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhcc-CCceEEEcCCCCchhhhccCCC-----CC
Q psy15555 213 RVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNC-QLKTYKLYPPCDTEDLKKITHS-----KT 286 (488)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~-~~k~~vi~~~~d~~~~~~~~~~-----~~ 286 (488)
....... . ...+..++.+|.+++.|+.+++.+.+.++. ..++.+++|++|...+...... ..
T Consensus 119 -------~~~~~~~--~---~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 186 (353)
T cd03811 119 -------LKRKLRL--L---LLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIRALAEEPLELGIP 186 (353)
T ss_pred -------hccchhH--H---HHHHhhccccceEEEeccchhhhHHHhhcCCccccEEecCCcChhhcCcccchhhhcCCC
Confidence 0000000 0 355668899999999999999999998775 4589999999998776554432 24
Q ss_pred CCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCC
Q psy15555 287 DGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLP 366 (488)
Q Consensus 287 ~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 366 (488)
.++++++++|++.+.||++.++++++.+.++. ++++++++|.++.. +++++.+++.++.++|.+.|..
T Consensus 187 ~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~-----~~~~l~i~G~~~~~------~~~~~~~~~~~~~~~v~~~g~~- 254 (353)
T cd03811 187 PDGPVILAVGRLSPQKGFDTLIRAFALLRKEG-----PDARLVILGDGPLR------EELEALAKELGLADRVHFLGFQ- 254 (353)
T ss_pred CCceEEEEEecchhhcChHHHHHHHHHhhhcC-----CCceEEEEcCCccH------HHHHHHHHhcCCCccEEEeccc-
Confidence 56789999999999999999999999998876 79999999988643 6777888899988999999997
Q ss_pred hHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHH---HHHHHH
Q psy15555 367 YEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEY---AQTIKL 441 (488)
Q Consensus 367 ~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l---~~~i~~ 441 (488)
+++.++|+.||+++.||..|++|++++|||++|+|||+++.++.. |++.++ .+|++++ |.+++ .+++..
T Consensus 255 -~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~~~~-e~i~~~----~~g~~~~~~~~~~~~~~~~~i~~ 328 (353)
T cd03811 255 -SNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCPGPR-EILEDG----ENGLLVPVGDEAALAAAALALLD 328 (353)
T ss_pred -CCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCCChH-HHhcCC----CceEEECCCCHHHHHHHHHHHHh
Confidence 789999999999999999999999999999999999999999886 999888 8999986 77777 788888
Q ss_pred HHccCHHHHHHHHHHHHHHH-hhcC
Q psy15555 442 ILHLSQDTKTRISQNAVSSV-DRFS 465 (488)
Q Consensus 442 ll~~~~~~~~~~~~~a~~~~-~~~s 465 (488)
+.. +++.+.++++++++.+ ++||
T Consensus 329 ~~~-~~~~~~~~~~~~~~~~~~~~~ 352 (353)
T cd03811 329 LLL-DPELRERLAAAARERVAREYS 352 (353)
T ss_pred ccC-ChHHHHHHHHHHHHHHHHHhc
Confidence 888 8999999999777666 7765
No 59
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=100.00 E-value=7.8e-32 Score=266.70 Aligned_cols=281 Identities=14% Similarity=0.246 Sum_probs=215.5
Q ss_pred HHhhhcCCcEEEecCCccchhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHHHHH
Q psy15555 153 EALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFA 232 (488)
Q Consensus 153 ~~l~~~~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (488)
+.|...++||+|.........+++.....+|.++.+|...... . ........+...+.
T Consensus 205 ~~L~~~~~di~i~dr~~~~~~~~~~~~~~~~~v~~lH~~h~~~---------------------~-~~~~~~~~~~~~y~ 262 (500)
T TIGR02918 205 KQLNLTKKDIIILDRSTGIGQAVLENKGPAKLGVVVHAEHFSE---------------------S-ATNETYILWNNYYE 262 (500)
T ss_pred HHHhCCCCCEEEEcCCcccchHHHhcCCCceEEEEEChhhhcC---------------------c-cCcchhHHHHHHHH
Confidence 3345568998886543333334555456789999999543111 0 00000000111111
Q ss_pred HHHHHHhcccCEEEEcChhHHHHHHHHhc----cCCceEEEcCCCCchhhhccCCCCCCCCeEEEEeeccCCCCChHHHH
Q psy15555 233 LLYSHVGKYSDIIMVNSSWTEEHVIQLWN----CQLKTYKLYPPCDTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQL 308 (488)
Q Consensus 233 ~~~~~~~~~~d~ii~~s~~~~~~~~~~~~----~~~k~~vi~~~~d~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll 308 (488)
... ...+.+|.+++.|+..++.+.+.++ ...++.++|++++.....+. ...++..++++||+.++||++.++
T Consensus 263 ~~~-~~~~~~D~iI~~S~~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~~---~~r~~~~il~vGrl~~~Kg~~~li 338 (500)
T TIGR02918 263 YQF-SNADYIDFFITATDIQNQILKNQFKKYYNIEPRIYTIPVGSLDELQYPE---QERKPFSIITASRLAKEKHIDWLV 338 (500)
T ss_pred HHH-hchhhCCEEEECCHHHHHHHHHHhhhhcCCCCcEEEEcCCCcccccCcc---cccCCeEEEEEeccccccCHHHHH
Confidence 111 1346789999999998888876543 24578999999764433321 123457899999999999999999
Q ss_pred HHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCc
Q psy15555 309 RAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEH 388 (488)
Q Consensus 309 ~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~ 388 (488)
+|+.++.++. |+++|.|+|.|+.. ++++++++++++.++|.+.|.. ++.++|+.||+++.||..|+
T Consensus 339 ~A~~~l~~~~-----p~~~l~i~G~G~~~------~~l~~~i~~~~l~~~V~f~G~~---~~~~~~~~adv~v~pS~~Eg 404 (500)
T TIGR02918 339 KAVVKAKKSV-----PELTFDIYGEGGEK------QKLQKIINENQAQDYIHLKGHR---NLSEVYKDYELYLSASTSEG 404 (500)
T ss_pred HHHHHHHhhC-----CCeEEEEEECchhH------HHHHHHHHHcCCCCeEEEcCCC---CHHHHHHhCCEEEEcCcccc
Confidence 9999999887 89999999999632 7899999999999999999975 68899999999999999999
Q ss_pred CCccHHHHHHcCCcEEEeCCC-CCccceeccCCCccccceecC-C---------HHHHHHHHHHHHccCHHHHHHHHHHH
Q psy15555 389 FGIGIVECMAAGLIMIAHKSG-GPKMDIVIEDPETCRNGFLAC-D---------EVEYAQTIKLILHLSQDTKTRISQNA 457 (488)
Q Consensus 389 ~g~~~lEa~a~G~PvI~~~~~-~~~~eiv~~~~~~~~~g~~~~-~---------~~~l~~~i~~ll~~~~~~~~~~~~~a 457 (488)
||++++||||||+|||+++.+ |+. |++.++ .+|++++ + +++++++|.++++ + +.+.+|+++|
T Consensus 405 fgl~~lEAma~G~PVI~~dv~~G~~-eiI~~g----~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~-~-~~~~~~~~~a 477 (500)
T TIGR02918 405 FGLTLMEAVGSGLGMIGFDVNYGNP-TFIEDN----KNGYLIPIDEEEDDEDQIITALAEKIVEYFN-S-NDIDAFHEYS 477 (500)
T ss_pred ccHHHHHHHHhCCCEEEecCCCCCH-HHccCC----CCEEEEeCCccccchhHHHHHHHHHHHHHhC-h-HHHHHHHHHH
Confidence 999999999999999999985 776 999998 9999986 1 8889999999995 4 4689999999
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHh
Q psy15555 458 VSSVDRFSMEEFKNGFLTFTQPL 480 (488)
Q Consensus 458 ~~~~~~~s~~~~~~~~~~~~~~~ 480 (488)
++.+++|||+.++++|.++++++
T Consensus 478 ~~~a~~fs~~~v~~~w~~ll~~~ 500 (500)
T TIGR02918 478 YQIAEGFLTANIIEKWKKLVREV 500 (500)
T ss_pred HHHHHhcCHHHHHHHHHHHHhhC
Confidence 99889999999999999998764
No 60
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=100.00 E-value=1.8e-31 Score=259.49 Aligned_cols=345 Identities=16% Similarity=0.118 Sum_probs=241.6
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
|||++++.. ...||.++++..++++|.++||++.++..... .
T Consensus 1 MkIl~~~~~-~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~----------~--------------------------- 42 (365)
T cd03825 1 MKVLHLNTS-DISGGAARAAYRLHRALQAAGVDSTMLVQEKK----------A--------------------------- 42 (365)
T ss_pred CeEEEEecC-CCCCcHHHHHHHHHHHHHhcCCceeEEEeecc----------h---------------------------
Confidence 899998765 34578999999999999999655555543322 0
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchh--hhhhhh-CCCeeEEEEeCCccchHHHHHHHhhhhcc-
Q psy15555 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTY--PLFSYI-GGSKVACYIHYPTITKEMLTRVARRVITH- 208 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~--~~~~~~-~~~~~v~~~h~p~~~~d~~~~~~~~~~~~- 208 (488)
..+.++..+||+||.+......+ ..+... .++|++..+|.......-.. .......+
T Consensus 43 ------------------~~~~~~~~~~diih~~~~~~~~~~~~~~~~~~~~~~~v~~~hd~~~~~~~~~-~~~~~~~~~ 103 (365)
T cd03825 43 ------------------LISKIEIINADIVHLHWIHGGFLSIEDLSKLLDRKPVVWTLHDMWPFTGGCH-YPGGCDRYK 103 (365)
T ss_pred ------------------hhhChhcccCCEEEEEccccCccCHHHHHHHHcCCCEEEEcccCcccccccC-Ccccccccc
Confidence 12245577899988654222221 122212 48899998885422100000 00000000
Q ss_pred -cCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhcc-CCceEEEcCCCCchhhhccCC---
Q psy15555 209 -NNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNC-QLKTYKLYPPCDTEDLKKITH--- 283 (488)
Q Consensus 209 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~-~~k~~vi~~~~d~~~~~~~~~--- 283 (488)
.............. ......+..........++.++++|++.++.+.+.+.. ..++.+++||+|.+.+.+...
T Consensus 104 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~ 181 (365)
T cd03825 104 TECGNCPQLGSYPEK--DLSRWIWRRKRKAWADLNLTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIFRPRDKREA 181 (365)
T ss_pred ccCCCCCCCCCCCcc--cHHHHHHHHHHHHhccCCcEEEehhHHHHHHHHhccccCCCceEEeCCCCcccccCCCcHHHH
Confidence 00000000000000 11112222222223366789999999999999886533 358999999999876643321
Q ss_pred ----CCCCCCeEEEEeeccCC--CCChHHHHHHHHHhHHh-hhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCC
Q psy15555 284 ----SKTDGPVKIISVAQFRP--EKDHPLQLRAMYQLRQI-ISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLE 356 (488)
Q Consensus 284 ----~~~~~~~~i~~~g~~~~--~k~~~~ll~a~~~l~~~-~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~ 356 (488)
..+.++.+++++|+... .||++.+++|++.+.++ . ++++++++|+++.. ... ++.
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~-----~~~~~~i~G~~~~~--------~~~-----~~~ 243 (365)
T cd03825 182 RKRLGLPADKKIILFGAVGGTDPRKGFDELIEALKRLAERWK-----DDIELVVFGASDPE--------IPP-----DLP 243 (365)
T ss_pred HHHhCCCCCCeEEEEEecCCCccccCHHHHHHHHHHhhhccC-----CCeEEEEeCCCchh--------hhc-----cCC
Confidence 12344566777777655 89999999999999875 3 68999999988632 111 345
Q ss_pred CcEEEecCCC-hHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHH
Q psy15555 357 NNVEFKVNLP-YEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEV 433 (488)
Q Consensus 357 ~~v~~~g~~~-~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~ 433 (488)
+++.+.|+++ .+++..+|+.||+++.||..|++|.+++|||++|+|||+++.++.. |++.++ .+|++++ |.+
T Consensus 244 ~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~-e~~~~~----~~g~~~~~~~~~ 318 (365)
T cd03825 244 FPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIP-DIVDHG----VTGYLAKPGDPE 318 (365)
T ss_pred CceEecCCcCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCCh-hheeCC----CceEEeCCCCHH
Confidence 7899999998 7899999999999999999999999999999999999999999886 888887 7899876 899
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHh
Q psy15555 434 EYAQTIKLILHLSQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQPL 480 (488)
Q Consensus 434 ~l~~~i~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~~~ 480 (488)
++++++.++++ +++.+.++++++++.+ ++|||+.+++++.++|+++
T Consensus 319 ~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 319 DLAEGIEWLLA-DPDEREELGEAARELAENEFDSRVQAKRYLSLYEEL 365 (365)
T ss_pred HHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 99999999999 9999999999999998 8999999999999999864
No 61
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=7.3e-31 Score=252.95 Aligned_cols=362 Identities=14% Similarity=0.066 Sum_probs=230.0
Q ss_pred cccEEEEeccC-CCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCC--------------hhHHHHHhhhhcccccC
Q psy15555 51 VLKTVAFFHPY-CNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDAS--------------PSEIIKRAHQRFNIVLP 115 (488)
Q Consensus 51 ~~~rI~~~~~~-~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~ 115 (488)
++|||++++.. .+..+|.......++..|.++|+ |+|.++....... +.+.....+....
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~-heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~---- 77 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGD-REVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLE---- 77 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCC-cEEEEEecCCccccccccccccccccCchhhhhhhhhhcc----
Confidence 46999998754 44555787888899999999951 4555555432110 0000000000110
Q ss_pred CCee-EEEEeeccceeeccCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhh--hhhhh-CCCeeEEEEeCC
Q psy15555 116 DQVI-NFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP--LFSYI-GGSKVACYIHYP 191 (488)
Q Consensus 116 ~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~--~~~~~-~~~~~v~~~h~p 191 (488)
.. + .+-.++...+ +..+..-. ..+.....+.+.+++++|||||.++.+..... ..++. +..+++...|..
T Consensus 78 ~~-v~r~~s~~~p~y--p~r~~~~~---r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k~~~vV~tyHT~ 151 (462)
T PLN02846 78 ER-ISFLPKFSIKFY--PGKFSTDK---RSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKTKFRLVIGIVHTN 151 (462)
T ss_pred Ce-EEEecccccccC--cccccccc---cccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhcCCcEEEEECCC
Confidence 00 1 1111111111 01000000 00001134677888999999997775444331 11222 123355567753
Q ss_pred ccchHHHHHHHhhhhcccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcC
Q psy15555 192 TITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYP 271 (488)
Q Consensus 192 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~ 271 (488)
...++... .+ ........+....+..+ .++|.+++.|+.+.+ +.+ ...+..+
T Consensus 152 -----y~~Y~~~~-----------~~---g~~~~~l~~~~~~~~~r--~~~d~vi~pS~~~~~-l~~------~~i~~v~ 203 (462)
T PLN02846 152 -----YLEYVKRE-----------KN---GRVKAFLLKYINSWVVD--IYCHKVIRLSAATQD-YPR------SIICNVH 203 (462)
T ss_pred -----hHHHHHHh-----------cc---chHHHHHHHHHHHHHHH--HhcCEEEccCHHHHH-Hhh------CEEecCc
Confidence 22222110 00 01111122222222111 137999999986655 433 1334457
Q ss_pred CCCchhhhccCCC-----CCCC--CeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHH
Q psy15555 272 PCDTEDLKKITHS-----KTDG--PVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVK 344 (488)
Q Consensus 272 ~~d~~~~~~~~~~-----~~~~--~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~ 344 (488)
|+|.+.+.+.... ...+ .+.++|+||+..+||++.+++|++.+.+.. ++++|+|+|+||+. +
T Consensus 204 GVd~~~f~~~~~~~~~~~~~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~~-----~~~~l~ivGdGp~~------~ 272 (462)
T PLN02846 204 GVNPKFLEIGKLKLEQQKNGEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKEL-----SGLEVDLYGSGEDS------D 272 (462)
T ss_pred eechhhcCCCcccHhhhcCCCCCcceEEEEEecCcccCCHHHHHHHHHHHHhhC-----CCeEEEEECCCccH------H
Confidence 9998877644211 1122 246899999999999999999999998876 79999999999865 7
Q ss_pred HHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccc
Q psy15555 345 DMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCR 424 (488)
Q Consensus 345 ~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~ 424 (488)
++++.++++++...+ |.|..+. .++|+.+|+||+||..|++|++++||||+|+|||+++.++. +++.++ .
T Consensus 273 ~L~~~a~~l~l~~~v-f~G~~~~---~~~~~~~DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~~--~~v~~~----~ 342 (462)
T PLN02846 273 EVKAAAEKLELDVRV-YPGRDHA---DPLFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSN--EFFKQF----P 342 (462)
T ss_pred HHHHHHHhcCCcEEE-ECCCCCH---HHHHHhCCEEEECCCcccchHHHHHHHHcCCcEEEecCCCc--ceeecC----C
Confidence 899999998876444 7776433 37999999999999999999999999999999999999873 888888 8
Q ss_pred cceecCCHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy15555 425 NGFLACDEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 425 ~g~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~ 478 (488)
+|+.++|.+++++++.+++. ++. .+++.+++ ++|||+..++++++.++
T Consensus 343 ng~~~~~~~~~a~ai~~~l~-~~~--~~~~~~a~---~~~SWe~~~~~l~~~~~ 390 (462)
T PLN02846 343 NCRTYDDGKGFVRATLKALA-EEP--APLTDAQR---HELSWEAATERFLRVAD 390 (462)
T ss_pred ceEecCCHHHHHHHHHHHHc-cCc--hhHHHHHH---HhCCHHHHHHHHHHHhc
Confidence 99999999999999999998 432 33333333 69999999999999987
No 62
>KOG1111|consensus
Probab=100.00 E-value=1.2e-31 Score=237.28 Aligned_cols=362 Identities=15% Similarity=0.139 Sum_probs=265.3
Q ss_pred EEEEeccC-CCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 54 TVAFFHPY-CNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 54 rI~~~~~~-~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
+|+.+.+. ++..||.|...+.+.+.|-+. ++.|++.|...+.. .+++...++..++++|.......
T Consensus 2 ~i~mVsdff~P~~ggveshiy~lSq~li~l--ghkVvvithayg~r-----------~girylt~glkVyylp~~v~~n~ 68 (426)
T KOG1111|consen 2 RILMVSDFFYPSTGGVESHIYALSQCLIRL--GHKVVVITHAYGNR-----------VGIRYLTNGLKVYYLPAVVGYNQ 68 (426)
T ss_pred cceeeCcccccCCCChhhhHHHhhcchhhc--CCeEEEEeccccCc-----------cceeeecCCceEEEEeeeeeecc
Confidence 56766654 457788999999999999999 78888887765432 12222233366777766544433
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhh---hhhCCCeeEEEEeCCccchHHHHHHHhhhhccc
Q psy15555 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLF---SYIGGSKVACYIHYPTITKEMLTRVARRVITHN 209 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~---~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~ 209 (488)
..++-+ +..+...+..+.+++..|+|.+..+.+...-+ ....|-+++++-|.-+-..|
T Consensus 69 tT~ptv------~~~~Pllr~i~lrE~I~ivhghs~fS~lahe~l~hartMGlktVfTdHSlfGfad------------- 129 (426)
T KOG1111|consen 69 TTFPTV------FSDFPLLRPILLRERIEIVHGHSPFSYLAHEALMHARTMGLKTVFTDHSLFGFAD------------- 129 (426)
T ss_pred cchhhh------hccCcccchhhhhhceEEEecCChHHHHHHHHHHHHHhcCceEEEeccccccccc-------------
Confidence 333221 11122344556677899999887655543311 11347888888885321111
Q ss_pred CccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhc-cCCceEEEcCCCCchhhhccCCCCC-C
Q psy15555 210 NSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWN-CQLKTYKLYPPCDTEDLKKITHSKT-D 287 (488)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~-~~~k~~vi~~~~d~~~~~~~~~~~~-~ 287 (488)
..+ .....+....+...|.+||+|...++...-... .+.++.+|||.++...|.|.....+ .
T Consensus 130 ---------~~s-------i~~n~ll~~sL~~id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~~~S~ 193 (426)
T KOG1111|consen 130 ---------IGS-------ILTNKLLPLSLANIDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAADKPSA 193 (426)
T ss_pred ---------hhh-------hhhcceeeeeecCCCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccccCccccCCC
Confidence 111 111223445778899999999887766543333 2458999999999999988554433 3
Q ss_pred CCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCCh
Q psy15555 288 GPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPY 367 (488)
Q Consensus 288 ~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 367 (488)
+...++.+||+-.+||++.+++++.++.+++ |+++++|+|+||.. ..+++..+++.+.++|+++|.+++
T Consensus 194 ~i~~ivv~sRLvyrKGiDll~~iIp~vc~~~-----p~vrfii~GDGPk~------i~lee~lEk~~l~~rV~~lG~v~h 262 (426)
T KOG1111|consen 194 DIITIVVASRLVYRKGIDLLLEIIPSVCDKH-----PEVRFIIIGDGPKR------IDLEEMLEKLFLQDRVVMLGTVPH 262 (426)
T ss_pred CeeEEEEEeeeeeccchHHHHHHHHHHHhcC-----CCeeEEEecCCccc------chHHHHHHHhhccCceEEecccch
Confidence 4488999999999999999999999999998 99999999999955 678888888899999999999999
Q ss_pred HHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC-CHHHHHHHHHHHHccC
Q psy15555 368 EDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKLILHLS 446 (488)
Q Consensus 368 ~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~~~ 446 (488)
+++.+.|.+.|+|+++|..|.||++++|||+||+||+++..||.+ |++-+. .-...+ +++++++++++.+. .
T Consensus 263 ~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScGL~VVsTrVGGIp-eVLP~d-----~i~~~~~~~~dl~~~v~~ai~-~ 335 (426)
T KOG1111|consen 263 DRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCGLPVVSTRVGGIP-EVLPED-----MITLGEPGPDDLVGAVEKAIT-K 335 (426)
T ss_pred HHHHHHHhcCcEEeccHHHHHHHHHHHHHHhCCCEEEEeecCCcc-ccCCcc-----ceeccCCChHHHHHHHHHHHH-H
Confidence 999999999999999999999999999999999999999999998 887543 122333 78888888888776 2
Q ss_pred HHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHhhhhh
Q psy15555 447 QDTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQPLFKVM 484 (488)
Q Consensus 447 ~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~~~~~~~ 484 (488)
+....+...+.+ +.|+|+..+++.+++|.++...+
T Consensus 336 ---~~~~p~~~h~~v~~~y~w~dVa~rTekvy~r~~~t~ 371 (426)
T KOG1111|consen 336 ---LRTLPLEFHDRVKKMYSWKDVAERTEKVYDRAATTS 371 (426)
T ss_pred ---hccCchhHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 222233445555 88999999999999999987655
No 63
>PLN02275 transferase, transferring glycosyl groups
Probab=99.97 E-value=2.5e-29 Score=243.31 Aligned_cols=253 Identities=17% Similarity=0.240 Sum_probs=186.4
Q ss_pred hhhcCCcEEEecCCccchh---h-hhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHHH
Q psy15555 155 LLSFQPDIYIDTMGYAFTY---P-LFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKV 230 (488)
Q Consensus 155 l~~~~pDiii~~~~~~~~~---~-~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (488)
.+..+||+||.+...+... . .+.+..+.|++++.|... ..+ .. .. ...+....+.
T Consensus 96 ~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~--~~~----~~------------~~---~~~~~~~~~~ 154 (371)
T PLN02275 96 VKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNFG--YTL----LA------------LS---LGRSHPLVRL 154 (371)
T ss_pred hhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCcc--HHH----Hh------------cc---cCCCCHHHHH
Confidence 3568999999765333221 1 233356789988877431 000 00 00 0011223345
Q ss_pred HHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCC---CCCCCeEEEEeeccCCCCChHHH
Q psy15555 231 FALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHS---KTDGPVKIISVAQFRPEKDHPLQ 307 (488)
Q Consensus 231 ~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~---~~~~~~~i~~~g~~~~~k~~~~l 307 (488)
..++++.+.+.+|.++++|+.+++.+.+.++.+ +.+++|+. .+.+.+.... ..++..+++++|++.+.||++.+
T Consensus 155 ~~~~e~~~~~~ad~ii~~S~~~~~~l~~~~g~~--i~vi~n~~-~~~f~~~~~~~~~~~~~~~~i~~~grl~~~k~~~~l 231 (371)
T PLN02275 155 YRWYERHYGKMADGHLCVTKAMQHELDQNWGIR--ATVLYDQP-PEFFRPASLEIRLRPNRPALVVSSTSWTPDEDFGIL 231 (371)
T ss_pred HHHHHHHHHhhCCEEEECCHHHHHHHHHhcCCC--eEEECCCC-HHHcCcCCchhcccCCCcEEEEEeCceeccCCHHHH
Confidence 566778888999999999999999998865654 78999984 4555443211 12344578899999999999999
Q ss_pred HHHHHHhHHhhhh------------hccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEec-CCChHHHHHHH
Q psy15555 308 LRAMYQLRQIISE------------ELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKV-NLPYEDMKKEF 374 (488)
Q Consensus 308 l~a~~~l~~~~~~------------~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g-~~~~~el~~~~ 374 (488)
++|+..+..+... ...|+++|+|+|+|+.. +++++.++++++.+ +++.+ +++.+++..+|
T Consensus 232 i~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~~~------~~l~~~~~~~~l~~-v~~~~~~~~~~~~~~~l 304 (371)
T PLN02275 232 LEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKGPQK------AMYEEKISRLNLRH-VAFRTMWLEAEDYPLLL 304 (371)
T ss_pred HHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCCCCH------HHHHHHHHHcCCCc-eEEEcCCCCHHHHHHHH
Confidence 9999887421100 00178999999999754 88999999999875 77765 68999999999
Q ss_pred HhCcEEEEcC---CCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHH
Q psy15555 375 SEGLIGLHAM---WNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLIL 443 (488)
Q Consensus 375 ~~ad~~v~~s---~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll 443 (488)
+.||+++.++ ..|++|.+++||||||+|||+++.++.. |+++++ .+|++++|+++++++|.+++
T Consensus 305 ~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~-eiv~~g----~~G~lv~~~~~la~~i~~l~ 371 (371)
T PLN02275 305 GSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIG-ELVKDG----KNGLLFSSSSELADQLLELL 371 (371)
T ss_pred HhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChH-HHccCC----CCeEEECCHHHHHHHHHHhC
Confidence 9999998753 3478999999999999999999999986 999988 89999999999999998874
No 64
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.97 E-value=9.7e-30 Score=248.96 Aligned_cols=220 Identities=18% Similarity=0.240 Sum_probs=192.1
Q ss_pred HHHhcccCEEEEcChhHHHHHHHHhcc-CCceEEEcCCCCchhhhccCCCCCCCCeEEEEeeccCCCCChHHHHHHHHHh
Q psy15555 236 SHVGKYSDIIMVNSSWTEEHVIQLWNC-QLKTYKLYPPCDTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQL 314 (488)
Q Consensus 236 ~~~~~~~d~ii~~s~~~~~~~~~~~~~-~~k~~vi~~~~d~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l 314 (488)
+.+++++|.++++|+..++.+.+.++. ..++.++++|++...+... ...++.+.++++|++.+.||++.+++|+.++
T Consensus 178 ~~~~~~~d~ii~~S~~~~~~l~~~~~~~~~ki~vi~~gv~~~~~~~~--~~~~~~~~il~~Grl~~~Kg~~~li~a~~~l 255 (407)
T cd04946 178 RYLLSSLDAVFPCSEQGRNYLQKRYPAYKEKIKVSYLGVSDPGIISK--PSKDDTLRIVSCSYLVPVKRVDLIIKALAAL 255 (407)
T ss_pred HHHHhcCCEEEECCHHHHHHHHHHCCCccccEEEEECCcccccccCC--CCCCCCEEEEEeeccccccCHHHHHHHHHHH
Confidence 346788999999999999999988765 3578899999987655432 2235678999999999999999999999999
Q ss_pred HHhhhhhccC--ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcCCCCcCC
Q psy15555 315 RQIISEELWD--NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAMWNEHFG 390 (488)
Q Consensus 315 ~~~~~~~~~~--~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s~~e~~g 390 (488)
.+.. | ++.++++|+|+.. +++++++++.+..++|.|.|+++++|+.++|+. +|+++.+|..|++|
T Consensus 256 ~~~~-----p~~~l~~~iiG~g~~~------~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p 324 (407)
T cd04946 256 AKAR-----PSIKIKWTHIGGGPLE------DTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLP 324 (407)
T ss_pred HHhC-----CCceEEEEEEeCchHH------HHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCcccccc
Confidence 8876 4 5677889988643 678888888887889999999999999999986 67899999999999
Q ss_pred ccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC---CHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-hhcCH
Q psy15555 391 IGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC---DEVEYAQTIKLILHLSQDTKTRISQNAVSSV-DRFSM 466 (488)
Q Consensus 391 ~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~---~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~-~~~s~ 466 (488)
++++|||++|+|||+++.+|.. |++.++ .+|++++ |+++++++|.++++ |++.+++|+++|++.+ ++||+
T Consensus 325 ~~llEAma~G~PVIas~vgg~~-e~i~~~----~~G~l~~~~~~~~~la~~I~~ll~-~~~~~~~m~~~ar~~~~~~f~~ 398 (407)
T cd04946 325 VSIMEAMSFGIPVIATNVGGTP-EIVDNG----GNGLLLSKDPTPNELVSSLSKFID-NEEEYQTMREKAREKWEENFNA 398 (407)
T ss_pred HHHHHHHHcCCCEEeCCCCCcH-HHhcCC----CcEEEeCCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHcCH
Confidence 9999999999999999999997 999888 8898874 68999999999999 9999999999999999 99999
Q ss_pred HHHHHHHH
Q psy15555 467 EEFKNGFL 474 (488)
Q Consensus 467 ~~~~~~~~ 474 (488)
+...+++.
T Consensus 399 ~~~~~~~~ 406 (407)
T cd04946 399 SKNYREFA 406 (407)
T ss_pred HHhHHHhc
Confidence 99988875
No 65
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.97 E-value=4.1e-30 Score=250.51 Aligned_cols=273 Identities=22% Similarity=0.326 Sum_probs=216.2
Q ss_pred hcCCcEEEecCCccchhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHHHHHHHHH
Q psy15555 157 SFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFALLYS 236 (488)
Q Consensus 157 ~~~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (488)
..++|++|.+.......++.......+.+.++|...... . .....+..+..+... .
T Consensus 97 ~~~~diii~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~---------------~----~~~~~~~~~~~~~~~----~- 152 (372)
T cd04949 97 DTKPDVFILDRPTLDGQALLNMKKAAKVVVVLHSNHVSD---------------N----NDPVHSLINNFYEYV----F- 152 (372)
T ss_pred CCCCCEEEECCccccchhHHhccCCceEEEEEChHHhCC---------------c----ccccccccchhhHHH----H-
Confidence 478998887654443333444455667788888532100 0 000011111111111 1
Q ss_pred HHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHH
Q psy15555 237 HVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQ 316 (488)
Q Consensus 237 ~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~ 316 (488)
..++++|.+++.|+..++.+.+.++...++.++||+++...+.+.. ....++..++++|++.++|+++.+++|+.++.+
T Consensus 153 ~~~~~~d~ii~~s~~~~~~l~~~~~~~~~v~~ip~g~~~~~~~~~~-~~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~ 231 (372)
T cd04949 153 ENLDKVDGVIVATEQQKQDLQKQFGNYNPIYTIPVGSIDPLKLPAQ-FKQRKPHKIITVARLAPEKQLDQLIKAFAKVVK 231 (372)
T ss_pred hChhhCCEEEEccHHHHHHHHHHhCCCCceEEEcccccChhhcccc-hhhcCCCeEEEEEccCcccCHHHHHHHHHHHHH
Confidence 2357789999999999999999887665689999999877665432 122456789999999999999999999999998
Q ss_pred hhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHH
Q psy15555 317 IISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVEC 396 (488)
Q Consensus 317 ~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa 396 (488)
+. |+++|+|+|.++.. ..+++.+++.++.++|.+.|.. +++.++|+.||+++.||..|++|++++||
T Consensus 232 ~~-----~~~~l~i~G~g~~~------~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~S~~Eg~~~~~lEA 298 (372)
T cd04949 232 QV-----PDATLDIYGYGDEE------EKLKELIEELGLEDYVFLKGYT--RDLDEVYQKAQLSLLTSQSEGFGLSLMEA 298 (372)
T ss_pred hC-----CCcEEEEEEeCchH------HHHHHHHHHcCCcceEEEcCCC--CCHHHHHhhhhEEEecccccccChHHHHH
Confidence 87 89999999998643 6677788888999999999976 78999999999999999999999999999
Q ss_pred HHcCCcEEEeCCC-CCccceeccCCCccccceecC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHH
Q psy15555 397 MAAGLIMIAHKSG-GPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGF 473 (488)
Q Consensus 397 ~a~G~PvI~~~~~-~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~ 473 (488)
|++|+|||+++.+ |+. +++.++ .+|++++ |+++++++|.++++ +++.++++++++++.+++|||+.++++|
T Consensus 299 ma~G~PvI~~~~~~g~~-~~v~~~----~~G~lv~~~d~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~s~~~~~~~w 372 (372)
T cd04949 299 LSHGLPVISYDVNYGPS-EIIEDG----ENGYLVPKGDIEALAEAIIELLN-DPKLLQKFSEAAYENAERYSEENVWEKW 372 (372)
T ss_pred HhCCCCEEEecCCCCcH-HHcccC----CCceEeCCCcHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHhhHHHHHhcC
Confidence 9999999999986 665 899888 8999988 99999999999999 9999999999999999999999998864
No 66
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.97 E-value=2.7e-28 Score=237.87 Aligned_cols=272 Identities=13% Similarity=0.082 Sum_probs=197.0
Q ss_pred HHHHHHhhhcCCcEEEecCCccchhh-----hhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhh
Q psy15555 149 ILGVEALLSFQPDIYIDTMGYAFTYP-----LFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSF 223 (488)
Q Consensus 149 ~~~~~~l~~~~pDiii~~~~~~~~~~-----~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (488)
..+.+.+..++|||||..++.+.... .++ ..+ |++..+|..+ ..|+... . ....
T Consensus 424 gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~Ar-Kl~-PVVasyHTny-----~eYl~~y-----------~---~g~L 482 (794)
T PLN02501 424 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTD-KFN-HVVGVVHTNY-----LEYIKRE-----------K---NGAL 482 (794)
T ss_pred HHHHHHhhccCCCEEEECCchhhccHHHHHHHHH-HcC-CeEEEEeCCc-----HHHHhHh-----------c---chhH
Confidence 45678889999999986653333222 222 345 7888888654 2222221 0 1222
Q ss_pred hHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCC-----C--CCCCeEEEEee
Q psy15555 224 KLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHS-----K--TDGPVKIISVA 296 (488)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~-----~--~~~~~~i~~~g 296 (488)
.....+....+..... ||.+++.|+.+++ + + .+.....+|+|.+.|.+.... . ......++|+|
T Consensus 483 ~~~llk~l~~~v~r~h--cD~VIaPS~atq~-L----~--~~vI~nVnGVDte~F~P~~r~~~~r~lgi~~~~kgiLfVG 553 (794)
T PLN02501 483 QAFFVKHINNWVTRAY--CHKVLRLSAATQD-L----P--KSVICNVHGVNPKFLKIGEKVAEERELGQQAFSKGAYFLG 553 (794)
T ss_pred HHHHHHHHHHHHHHhh--CCEEEcCCHHHHH-h----c--ccceeecccccccccCCcchhHHHHhcCCccccCceEEEE
Confidence 2222222222222222 8999999977773 2 1 122233369999888764321 1 11224589999
Q ss_pred ccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh
Q psy15555 297 QFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE 376 (488)
Q Consensus 297 ~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ 376 (488)
|+.++||++.+++|++.+.++. ++++|+|+|+||.. +++++.++++++ +|.|+|.. ++...+|+.
T Consensus 554 RLa~EKGld~LLeAla~L~~~~-----pnvrLvIVGDGP~r------eeLe~la~eLgL--~V~FLG~~--dd~~~lyas 618 (794)
T PLN02501 554 KMVWAKGYRELIDLLAKHKNEL-----DGFNLDVFGNGEDA------HEVQRAAKRLDL--NLNFLKGR--DHADDSLHG 618 (794)
T ss_pred cccccCCHHHHHHHHHHHHhhC-----CCeEEEEEcCCccH------HHHHHHHHHcCC--EEEecCCC--CCHHHHHHh
Confidence 9999999999999999998776 79999999999854 788888888887 48999987 667789999
Q ss_pred CcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHHccCHHHHHHHHHH
Q psy15555 377 GLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILHLSQDTKTRISQN 456 (488)
Q Consensus 377 ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 456 (488)
+|+||+||..|++|++++||||||+|||+++.++. +++.++ .+|+++.|.++++++|.+++. +++.+..+++
T Consensus 619 aDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~--e~V~~g----~nGll~~D~EafAeAI~~LLs-d~~~rl~~~a- 690 (794)
T PLN02501 619 YKVFINPSISDVLCTATAEALAMGKFVVCADHPSN--EFFRSF----PNCLTYKTSEDFVAKVKEALA-NEPQPLTPEQ- 690 (794)
T ss_pred CCEEEECCCcccchHHHHHHHHcCCCEEEecCCCC--ceEeec----CCeEecCCHHHHHHHHHHHHh-CchhhhHHHH-
Confidence 99999999999999999999999999999999885 456666 788888899999999999998 7665433332
Q ss_pred HHHHHhhcCHHHHHHHHHHHH
Q psy15555 457 AVSSVDRFSMEEFKNGFLTFT 477 (488)
Q Consensus 457 a~~~~~~~s~~~~~~~~~~~~ 477 (488)
...+||+.+++++++.-
T Consensus 691 ----~~~~SWeAaadrLle~~ 707 (794)
T PLN02501 691 ----RYNLSWEAATQRFMEYS 707 (794)
T ss_pred ----HhhCCHHHHHHHHHHhh
Confidence 25899999999998764
No 67
>PHA01630 putative group 1 glycosyl transferase
Probab=99.97 E-value=2e-28 Score=230.64 Aligned_cols=218 Identities=15% Similarity=0.197 Sum_probs=173.1
Q ss_pred HHHH-hcccCEEEEcChhHHHHHHHHhcc-CCceEEEcCCCCchhhhccCCCCCCCCeEEEEeeccCCCCChHHHHHHHH
Q psy15555 235 YSHV-GKYSDIIMVNSSWTEEHVIQLWNC-QLKTYKLYPPCDTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMY 312 (488)
Q Consensus 235 ~~~~-~~~~d~ii~~s~~~~~~~~~~~~~-~~k~~vi~~~~d~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~ 312 (488)
..+. .+++|.++++|+.+++.+.+.+.. ++++.++|||+|.+.+.+.... ..++.+++++|++.++||++.+++|++
T Consensus 87 ~~~~~~~~ad~ii~~S~~~~~~l~~~g~~~~~~i~vIpNGVd~~~f~~~~~~-~~~~~vl~~~g~~~~~Kg~d~Li~A~~ 165 (331)
T PHA01630 87 LYFFRNQPVDEIVVPSQWSKNAFYTSGLKIPQPIYVIPHNLNPRMFEYKPKE-KPHPCVLAILPHSWDRKGGDIVVKIFH 165 (331)
T ss_pred HHHHhhccCCEEEECCHHHHHHHHHcCCCCCCCEEEECCCCCHHHcCCCccc-cCCCEEEEEeccccccCCHHHHHHHHH
Confidence 3345 578999999999999999886432 4589999999998877654322 234567778888989999999999999
Q ss_pred HhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCcc
Q psy15555 313 QLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIG 392 (488)
Q Consensus 313 ~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~ 392 (488)
.+.++. ++++++++|.++.. ..+ .++.. +.+.++.+++..+|+.||++++||..|+||++
T Consensus 166 ~l~~~~-----~~~~llivG~~~~~------~~l------~~~~~---~~~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~ 225 (331)
T PHA01630 166 ELQNEG-----YDFYFLIKSSNMLD------PRL------FGLNG---VKTPLPDDDIYSLFAGCDILFYPVRGGAFEIP 225 (331)
T ss_pred HHHhhC-----CCEEEEEEeCcccc------hhh------ccccc---eeccCCHHHHHHHHHhCCEEEECCccccCChH
Confidence 998876 79999999976422 111 12211 35668889999999999999999999999999
Q ss_pred HHHHHHcCCcEEEeCCCCCccceeccCCCcccc--------------------ceecC-CHHHHHHHHHHHHccC---HH
Q psy15555 393 IVECMAAGLIMIAHKSGGPKMDIVIEDPETCRN--------------------GFLAC-DEVEYAQTIKLILHLS---QD 448 (488)
Q Consensus 393 ~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~--------------------g~~~~-~~~~l~~~i~~ll~~~---~~ 448 (488)
++||||||+|||+++.+|.. |++.++ .+ |++++ |.+++++++.+++. + ++
T Consensus 226 ~lEAMA~G~PVIas~~gg~~-E~i~~~----~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~-~~~~~~ 299 (331)
T PHA01630 226 VIEALALGLDVVVTEKGAWS-EWVLSN----LDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALA-NWTPEK 299 (331)
T ss_pred HHHHHHcCCCEEEeCCCCch-hhccCC----CceEEeeecccccccccCCcccccccCCCHHHHHHHHHHHHh-CCCHHH
Confidence 99999999999999999886 888776 44 55555 78899999999998 5 34
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q psy15555 449 TKTRISQNAVSSVDRFSMEEFKNGFLTFTQP 479 (488)
Q Consensus 449 ~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~ 479 (488)
.++.++.+++...++|||+.+++++.++|++
T Consensus 300 ~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 300 KKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 4555555555555999999999999999975
No 68
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.96 E-value=2.5e-26 Score=222.17 Aligned_cols=338 Identities=12% Similarity=0.087 Sum_probs=228.1
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
|||.++.. ..||.++.+..++++|.+++ +++.+++...+.... ..+. .. +++..++.......
T Consensus 2 ~~i~i~~~---g~gG~~~~~~~la~~L~~~g--~ev~vv~~~~~~~~~----~~~~-------~g-~~~~~~~~~~~~~~ 64 (357)
T PRK00726 2 KKILLAGG---GTGGHVFPALALAEELKKRG--WEVLYLGTARGMEAR----LVPK-------AG-IEFHFIPSGGLRRK 64 (357)
T ss_pred cEEEEEcC---cchHhhhHHHHHHHHHHhCC--CEEEEEECCCchhhh----cccc-------CC-CcEEEEeccCcCCC
Confidence 78888643 23578899999999999984 555555554221110 1000 12 44555544332222
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhh-hhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCc
Q psy15555 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP-LFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNS 211 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~-~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~ 211 (488)
....++......+.......+.+++.+||+||++...++... .+....++|++.+.|...
T Consensus 65 ~~~~~l~~~~~~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~------------------- 125 (357)
T PRK00726 65 GSLANLKAPFKLLKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNAV------------------- 125 (357)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCCC-------------------
Confidence 323344444444566667778889999999998875444333 223456788886544211
Q ss_pred cccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCC----CCCC
Q psy15555 212 QRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITH----SKTD 287 (488)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~----~~~~ 287 (488)
.. ...++..+.+|.++++++... .+ ....++.+++|+++.+.+.+... ....
T Consensus 126 --------~~-----------~~~r~~~~~~d~ii~~~~~~~---~~--~~~~~i~vi~n~v~~~~~~~~~~~~~~~~~~ 181 (357)
T PRK00726 126 --------PG-----------LANKLLARFAKKVATAFPGAF---PE--FFKPKAVVTGNPVREEILALAAPPARLAGRE 181 (357)
T ss_pred --------cc-----------HHHHHHHHHhchheECchhhh---hc--cCCCCEEEECCCCChHhhcccchhhhccCCC
Confidence 00 112234456799999987542 22 33468999999998765543221 1223
Q ss_pred CCeEEEEeeccCCCCChHHHH-HHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCC
Q psy15555 288 GPVKIISVAQFRPEKDHPLQL-RAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLP 366 (488)
Q Consensus 288 ~~~~i~~~g~~~~~k~~~~ll-~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 366 (488)
+.++++++|+..+.++...++ +|++++.+. + ..++++|+++. +++.+..+ .++. |.+.|++
T Consensus 182 ~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~------~-~~~~~~G~g~~-------~~~~~~~~-~~~~--v~~~g~~- 243 (357)
T PRK00726 182 GKPTLLVVGGSQGARVLNEAVPEALALLPEA------L-QVIHQTGKGDL-------EEVRAAYA-AGIN--AEVVPFI- 243 (357)
T ss_pred CCeEEEEECCcHhHHHHHHHHHHHHHHhhhC------c-EEEEEcCCCcH-------HHHHHHhh-cCCc--EEEeehH-
Confidence 567788888887777765555 888887532 3 45778898852 44554455 6653 9999998
Q ss_pred hHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCc-------cceeccCCCccccceecC--C--HHHH
Q psy15555 367 YEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPK-------MDIVIEDPETCRNGFLAC--D--EVEY 435 (488)
Q Consensus 367 ~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~-------~eiv~~~~~~~~~g~~~~--~--~~~l 435 (488)
+++..+|+.||+++..| ++.+++|||++|+|+|+++.++.. .+.+.+. ++|++++ | ++++
T Consensus 244 -~~~~~~~~~~d~~i~~~----g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~----~~g~~~~~~~~~~~~l 314 (357)
T PRK00726 244 -DDMAAAYAAADLVICRA----GASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA----GAALLIPQSDLTPEKL 314 (357)
T ss_pred -hhHHHHHHhCCEEEECC----CHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC----CCEEEEEcccCCHHHH
Confidence 89999999999999865 368899999999999998764311 1345555 6888875 5 8999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy15555 436 AQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 436 ~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~ 478 (488)
+++|.++++ |++.+++|++++++..+.++.+.+++.+.++++
T Consensus 315 ~~~i~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 315 AEKLLELLS-DPERLEAMAEAARALGKPDAAERLADLIEELAR 356 (357)
T ss_pred HHHHHHHHc-CHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHhh
Confidence 999999999 999999999999988899999999998888764
No 69
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.95 E-value=3.1e-25 Score=217.01 Aligned_cols=284 Identities=13% Similarity=0.136 Sum_probs=206.3
Q ss_pred HHhhhcCCc-EEEecCCccchhhhh-h-hhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHH
Q psy15555 153 EALLSFQPD-IYIDTMGYAFTYPLF-S-YIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYK 229 (488)
Q Consensus 153 ~~l~~~~pD-iii~~~~~~~~~~~~-~-~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (488)
+..+..+|| +|..+......+|.. + .....++.+++|.|+...++...+..+ ..
T Consensus 120 ~i~~~~~~~d~vwvhDYhl~l~p~~lr~~~~~~~igfFlHipfP~~e~f~~lp~r-----------------------~~ 176 (456)
T TIGR02400 120 ALAPLLQPGDIVWVHDYHLMLLPAMLRELGVQNKIGFFLHIPFPSSEIYRTLPWR-----------------------RE 176 (456)
T ss_pred HHHHhCCCCCEEEEecchhhHHHHHHHhhCCCCeEEEEEeCCCCChHHHhhCCcH-----------------------HH
Confidence 344455665 666665445555533 2 234568889999998766654322211 01
Q ss_pred HHHHHHHHHhcccCEEEEcChhHHHHHHHHhc----------------cCCceEEEcCCCCchhhhccCCC---------
Q psy15555 230 VFALLYSHVGKYSDIIMVNSSWTEEHVIQLWN----------------CQLKTYKLYPPCDTEDLKKITHS--------- 284 (488)
Q Consensus 230 ~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~----------------~~~k~~vi~~~~d~~~~~~~~~~--------- 284 (488)
++ ..+-.+|.|-+++...++.|.+... ...++.++|||+|++.|.+....
T Consensus 177 il-----~gll~~dligF~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~ 251 (456)
T TIGR02400 177 LL-----EGLLAYDLVGFQTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAE 251 (456)
T ss_pred HH-----HHHhcCCEEEECCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHH
Confidence 11 2335689999999999999877332 22378899999999988654211
Q ss_pred ---CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCc----eEEEEEecCCCCCcHHHHHHHHHHHHhc----
Q psy15555 285 ---KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDN----LKLIFIGSTRNEEDEVCVKDMQDLCKHL---- 353 (488)
Q Consensus 285 ---~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~----~~l~ivG~~~~~~~~~~~~~l~~~~~~~---- 353 (488)
...++++++++||+++.||++.+++|++++.+++ |+ +.|+++|.....+.+++ +++++.++++
T Consensus 252 lr~~~~~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~-----p~~~~~v~Lv~v~~p~rg~~~~~-~~l~~~i~~lv~~i 325 (456)
T TIGR02400 252 LRESLKGRKLIIGVDRLDYSKGLPERLLAFERFLEEH-----PEWRGKVVLVQIAVPSRGDVPEY-QQLRRQVEELVGRI 325 (456)
T ss_pred HHHHcCCCeEEEEccccccccCHHHHHHHHHHHHHhC-----ccccCceEEEEEecCCccCchHH-HHHHHHHHHHHHHH
Confidence 1135789999999999999999999999998877 54 56777753211111122 4444444433
Q ss_pred ----C---CCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCc----EEEeCCCCCccceeccCCCc
Q psy15555 354 ----S---LENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLI----MIAHKSGGPKMDIVIEDPET 422 (488)
Q Consensus 354 ----~---l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~P----vI~~~~~~~~~eiv~~~~~~ 422 (488)
+ ..+.+.+.+.++.+|+.++|+.||+++.||..|++|++++||||||+| +|+|+.+|.. +.+.
T Consensus 326 n~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~-~~l~----- 399 (456)
T TIGR02400 326 NGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAA-QELN----- 399 (456)
T ss_pred HhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCCh-HHhC-----
Confidence 1 112234456789999999999999999999999999999999999999 9999998886 4442
Q ss_pred cccceecC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy15555 423 CRNGFLAC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 423 ~~~g~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~ 478 (488)
+|++++ |+++++++|.++++++++++++..+++++.+.+||+..+++++++.+.
T Consensus 400 --~gllVnP~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 400 --GALLVNPYDIDGMADAIARALTMPLEEREERHRAMMDKLRKNDVQRWREDFLSDLN 455 (456)
T ss_pred --CcEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhh
Confidence 377775 999999999999997889999999999999988999999999887553
No 70
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.95 E-value=1.2e-25 Score=222.00 Aligned_cols=282 Identities=15% Similarity=0.165 Sum_probs=204.1
Q ss_pred hhhcC-CcEEEecCCccchhhhh-h-hhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHHHH
Q psy15555 155 LLSFQ-PDIYIDTMGYAFTYPLF-S-YIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVF 231 (488)
Q Consensus 155 l~~~~-pDiii~~~~~~~~~~~~-~-~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (488)
....+ .|+|+.+......+|.. + .....++++++|.|+...+....... .
T Consensus 126 ~~~~~~~d~iwihDyhl~llp~~lr~~~~~~~i~~f~HipfP~~e~~~~lp~-------------------~-------- 178 (460)
T cd03788 126 AEVLRPGDLVWVHDYHLLLLPQMLRERGPDARIGFFLHIPFPSSEIFRCLPW-------------------R-------- 178 (460)
T ss_pred HHhcCCCCEEEEeChhhhHHHHHHHhhCCCCeEEEEEeCCCCChHHHhhCCC-------------------h--------
Confidence 33334 46777666555555533 2 12357899999999865543221110 0
Q ss_pred HHHHHHHhcccCEEEEcChhHHHHHHHHh-----------------ccCCceEEEcCCCCchhhhccCCC----------
Q psy15555 232 ALLYSHVGKYSDIIMVNSSWTEEHVIQLW-----------------NCQLKTYKLYPPCDTEDLKKITHS---------- 284 (488)
Q Consensus 232 ~~~~~~~~~~~d~ii~~s~~~~~~~~~~~-----------------~~~~k~~vi~~~~d~~~~~~~~~~---------- 284 (488)
..+.+ .+-.+|.+.+++....+.+.+.. +...++.++|||+|.+.+.+....
T Consensus 179 ~~ll~-~~l~~D~igF~t~~~~~~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~~~~~~~~~ 257 (460)
T cd03788 179 EELLR-GLLGADLIGFQTERYARNFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPEVQERAAEL 257 (460)
T ss_pred HHHHH-HHhcCCEEEECCHHHHHHHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCchhHHHHHHH
Confidence 01112 22348999999987777666532 222368899999999888654211
Q ss_pred --CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCc----eEEEEEecCCCCC---cHHHHHHHHHHHHhcCC
Q psy15555 285 --KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDN----LKLIFIGSTRNEE---DEVCVKDMQDLCKHLSL 355 (488)
Q Consensus 285 --~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~----~~l~ivG~~~~~~---~~~~~~~l~~~~~~~~l 355 (488)
...++++++++||+.+.||++.+++|++.+.++. |+ ++|+++|.+...+ ..++.+++++++.+.+.
T Consensus 258 ~~~~~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~-----p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~ 332 (460)
T cd03788 258 RERLGGRKLIVGVDRLDYSKGIPERLLAFERLLERY-----PEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRING 332 (460)
T ss_pred HHhcCCCEEEEEecCccccCCHHHHHHHHHHHHHhC-----hhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHh
Confidence 1246789999999999999999999999998876 54 6788887543211 12344555555544321
Q ss_pred C------CcEE-EecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCc----EEEeCCCCCccceeccCCCccc
Q psy15555 356 E------NNVE-FKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLI----MIAHKSGGPKMDIVIEDPETCR 424 (488)
Q Consensus 356 ~------~~v~-~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~P----vI~~~~~~~~~eiv~~~~~~~~ 424 (488)
. ..|+ +.|.++.+|+..+|+.||+++.||..|++|++++|||+||+| ||+++.+|.. +. + .
T Consensus 333 ~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~-~~---~----~ 404 (460)
T cd03788 333 KFGTLDWTPVRYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAA-EE---L----S 404 (460)
T ss_pred ccCCCCceeEEEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccch-hh---c----C
Confidence 1 2344 457889999999999999999999999999999999999999 9999888776 44 3 4
Q ss_pred cceecC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q psy15555 425 NGFLAC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFT 477 (488)
Q Consensus 425 ~g~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~ 477 (488)
+|++++ |+++++++|.+++++++++++++++++++.+++||++.+++++++-+
T Consensus 405 ~g~lv~p~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~~~~~~~w~~~~l~~l 459 (460)
T cd03788 405 GALLVNPYDIDEVADAIHRALTMPLEERRERHRKLREYVRTHDVQAWANSFLDDL 459 (460)
T ss_pred CCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Confidence 688876 99999999999998667889999999999999999999999987643
No 71
>KOG0853|consensus
Probab=99.95 E-value=1.6e-25 Score=212.17 Aligned_cols=296 Identities=22% Similarity=0.290 Sum_probs=230.8
Q ss_pred cCCcEEEecCCccchhhhhhhhCC----CeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHHHHHH
Q psy15555 158 FQPDIYIDTMGYAFTYPLFSYIGG----SKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFAL 233 (488)
Q Consensus 158 ~~pDiii~~~~~~~~~~~~~~~~~----~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (488)
++.|+++.... ....++.+...+ .++..++|.|... -....+..+..+...+.+
T Consensus 144 ~~~d~~i~d~~-~~~~~l~~~~~~p~~~~~i~~~~h~~~~l---------------------la~r~g~~~~l~~~~l~~ 201 (495)
T KOG0853|consen 144 EKVDPIIEDFV-SACVPLLKQLSGPDVIIKIYFYCHFPDSL---------------------LAKRLGVLKVLYRHALDK 201 (495)
T ss_pred hhhceeecchH-HHHHHHHHHhcCCcccceeEEeccchHHH---------------------hccccCccceeehhhhhh
Confidence 45776664432 344456665663 6778899977521 111234555667777888
Q ss_pred HHHHHhcccCEEEEcChhHHHHHHHHhccC--CceEEEcCCCCchhhhccC--------C------CCCCCCeEEEEeec
Q psy15555 234 LYSHVGKYSDIIMVNSSWTEEHVIQLWNCQ--LKTYKLYPPCDTEDLKKIT--------H------SKTDGPVKIISVAQ 297 (488)
Q Consensus 234 ~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~--~k~~vi~~~~d~~~~~~~~--------~------~~~~~~~~i~~~g~ 297 (488)
++......+|.+++.|...+.++.+....- .++.++++.+|.+.+.+.. . .....+..+.-+.+
T Consensus 202 ~e~e~~~~~~~~~~ns~~~~~~f~~~~~~L~~~d~~~~y~ei~~s~~~~~~~~~~~~~~~~~r~~~~v~~~d~~~~siN~ 281 (495)
T KOG0853|consen 202 IEEETTGLAWKILVNSYFTKRQFKATFVSLSNSDITSTYPEIDGSWFTYGQYESHLELRLPVRLYRGVSGIDRFFPSINR 281 (495)
T ss_pred hhhhhhhccceEecchhhhhhhhhhhhhhcCCCCcceeeccccchhccccccccchhcccccceeeeecccceEeeeeee
Confidence 888888999999999999999998876532 2588899999877655311 0 12233567788899
Q ss_pred cCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecC----CCCCcHHHHHHHHHHHHhcCC-CCcEEEecCCChHHHHH
Q psy15555 298 FRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGST----RNEEDEVCVKDMQDLCKHLSL-ENNVEFKVNLPYEDMKK 372 (488)
Q Consensus 298 ~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~----~~~~~~~~~~~l~~~~~~~~l-~~~v~~~g~~~~~el~~ 372 (488)
+.+.|+...+++++..+....++...++.++.++|+. ...++.++.+++.++++++++ .+.|.|+...++.+...
T Consensus 282 ~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yr 361 (495)
T KOG0853|consen 282 FEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYR 361 (495)
T ss_pred cCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCCchHHHHH
Confidence 9999999999999999988875444457888888832 244567888999999999998 46777878887777777
Q ss_pred HHHhCcE-EEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC-CHH---HHHHHHHHHHccCH
Q psy15555 373 EFSEGLI-GLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEV---EYAQTIKLILHLSQ 447 (488)
Q Consensus 373 ~~~~ad~-~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~---~l~~~i~~ll~~~~ 447 (488)
+++.+.+ +..|.. |+||++++|||+||+|||+++.||+. |++.++ .+|++++ +.+ .+++++.++.. |+
T Consensus 362 l~adt~~v~~qPa~-E~FGiv~IEAMa~glPvvAt~~GGP~-EiV~~~----~tG~l~dp~~e~~~~~a~~~~kl~~-~p 434 (495)
T KOG0853|consen 362 LAADTKGVLYQPAN-EHFGIVPIEAMACGLPVVATNNGGPA-EIVVHG----VTGLLIDPGQEAVAELADALLKLRR-DP 434 (495)
T ss_pred HHHhcceEEecCCC-CCccceeHHHHhcCCCEEEecCCCce-EEEEcC----CcceeeCCchHHHHHHHHHHHHHhc-CH
Confidence 7777774 445555 99999999999999999999999997 999999 9999988 666 59999999999 99
Q ss_pred HHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHhhh
Q psy15555 448 DTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQPLFK 482 (488)
Q Consensus 448 ~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~~~~~ 482 (488)
+.+.+|++++++.+ +.|||+.+.+++.+++.+.+.
T Consensus 435 ~l~~~~~~~G~~rV~e~fs~~~~~~ri~~~~~~~~~ 470 (495)
T KOG0853|consen 435 ELWARMGKNGLKRVKEMFSWQHYSERIASVLGKYLQ 470 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHhcCC
Confidence 99999999999999 779999999999998886654
No 72
>PHA01633 putative glycosyl transferase group 1
Probab=99.95 E-value=1.1e-25 Score=209.19 Aligned_cols=212 Identities=15% Similarity=0.183 Sum_probs=164.3
Q ss_pred cccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCC-------C---CCCCCeEEEEeeccCCCCChHHHHH
Q psy15555 240 KYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITH-------S---KTDGPVKIISVAQFRPEKDHPLQLR 309 (488)
Q Consensus 240 ~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~-------~---~~~~~~~i~~~g~~~~~k~~~~ll~ 309 (488)
.+.+.++++|+.+++.+.+. +.+..+ ++++|+|.+.|.+... . ...+.++++++||+.++||++.+++
T Consensus 91 ~~~~~vIavS~~t~~~L~~~-G~~~~i-~I~~GVD~~~f~p~~~~~~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~ 168 (335)
T PHA01633 91 LQDVKFIPNSKFSAENLQEV-GLQVDL-PVFHGINFKIVENAEKLVPQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQ 168 (335)
T ss_pred hcCCEEEeCCHHHHHHHHHh-CCCCce-eeeCCCChhhcCccchhhHHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHH
Confidence 34578999999999999985 433333 5778999887765321 0 1135678999999999999999999
Q ss_pred HHHHhHHhhhhhccCc----eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEe---cCCChHHHHHHHHhCcEEEE
Q psy15555 310 AMYQLRQIISEELWDN----LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFK---VNLPYEDMKKEFSEGLIGLH 382 (488)
Q Consensus 310 a~~~l~~~~~~~~~~~----~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~---g~~~~~el~~~~~~ad~~v~ 382 (488)
|++++.++. |+ ++++++|. .. .++++++++|.|. |.++.+++.++|+.||++++
T Consensus 169 A~~~L~~~~-----p~~~~~i~l~ivG~----------~~----~~~l~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~ 229 (335)
T PHA01633 169 VFNELNTKY-----PDIAKKIHFFVISH----------KQ----FTQLEVPANVHFVAEFGHNSREYIFAFYGAMDFTIV 229 (335)
T ss_pred HHHHHHHhC-----CCccccEEEEEEcH----------HH----HHHcCCCCcEEEEecCCCCCHHHHHHHHHhCCEEEE
Confidence 999998776 43 57777773 11 2445677899998 56678999999999999999
Q ss_pred cCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccC--------C------CccccceecC--CHHHHHHHHHHHHccC
Q psy15555 383 AMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIED--------P------ETCRNGFLAC--DEVEYAQTIKLILHLS 446 (488)
Q Consensus 383 ~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~--------~------~~~~~g~~~~--~~~~l~~~i~~ll~~~ 446 (488)
||..|+||++++|||+||+|||+++.++.. |++.++ + ...+.|+.++ |+++++++|.+++. .
T Consensus 230 PS~~EgfGlvlLEAMA~G~PVVas~~~~l~-Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~d~~~la~ai~~~~~-~ 307 (335)
T PHA01633 230 PSGTEGFGMPVLESMAMGTPVIHQLMPPLD-EFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKFQIEDMANAIILAFE-L 307 (335)
T ss_pred CCccccCCHHHHHHHHcCCCEEEccCCCce-eecCCccceeeCCCCHHHhcCcccCceeeecCCCHHHHHHHHHHHHh-c
Confidence 999999999999999999999999998876 654320 0 0124577765 99999999999966 3
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q psy15555 447 QDTKTRISQNAVSSVDRFSMEEFKNGFLT 475 (488)
Q Consensus 447 ~~~~~~~~~~a~~~~~~~s~~~~~~~~~~ 475 (488)
. .+...+.++++.+++|+|+.+.++|++
T Consensus 308 ~-~~~~~~~~~~~~a~~f~~~~~~~~~~~ 335 (335)
T PHA01633 308 Q-DREERSMKLKELAKKYDIRNLYTRFLE 335 (335)
T ss_pred c-ChhhhhHHHHHHHHhcCHHHHHHHhhC
Confidence 2 233447778888899999999999863
No 73
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.94 E-value=1.3e-24 Score=210.05 Aligned_cols=324 Identities=12% Similarity=0.084 Sum_probs=212.2
Q ss_pred CCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeeccCchhHHHHH
Q psy15555 63 NAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEASLYPYFTLLG 142 (488)
Q Consensus 63 ~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 142 (488)
+..||.++.+..++++|.++| ++|.+++....... ...+. .+ +++..++.........+..+....
T Consensus 7 ~~~gG~~~~~~~la~~l~~~G--~ev~v~~~~~~~~~-~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~~~ 72 (350)
T cd03785 7 GGTGGHIFPALALAEELRERG--AEVLFLGTKRGLEA-RLVPK----------AG-IPLHTIPVGGLRRKGSLKKLKAPF 72 (350)
T ss_pred cCchhhhhHHHHHHHHHHhCC--CEEEEEECCCcchh-hcccc----------cC-CceEEEEecCcCCCChHHHHHHHH
Confidence 345678899999999999995 55555555422111 00000 11 444444433222222233332222
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEecCCccchh-hhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccch
Q psy15555 143 QSIGSMILGVEALLSFQPDIYIDTMGYAFTY-PLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILT 221 (488)
Q Consensus 143 ~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~-~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (488)
..+.......+.+++.+||+||.+...+... ..+.+..++|++.+.|... ..
T Consensus 73 ~~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~~---------------------------~~ 125 (350)
T cd03785 73 KLLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNAV---------------------------PG 125 (350)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCCC---------------------------cc
Confidence 3344445566778899999999776444322 2333456788876443211 00
Q ss_pred hhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccC----CCCCCCCeEEEEeec
Q psy15555 222 SFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKIT----HSKTDGPVKIISVAQ 297 (488)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~----~~~~~~~~~i~~~g~ 297 (488)
...+.+.+.+|.++++|+.+++. . .+.++.+++|++|.+.+.+.. ...+++++++++.|+
T Consensus 126 -----------~~~~~~~~~~~~vi~~s~~~~~~----~-~~~~~~~i~n~v~~~~~~~~~~~~~~~~~~~~~~i~~~~g 189 (350)
T cd03785 126 -----------LANRLLARFADRVALSFPETAKY----F-PKDKAVVTGNPVREEILALDRERARLGLRPGKPTLLVFGG 189 (350)
T ss_pred -----------HHHHHHHHhhCEEEEcchhhhhc----C-CCCcEEEECCCCchHHhhhhhhHHhcCCCCCCeEEEEECC
Confidence 01223445689999999988776 2 245899999999877654321 112345667777776
Q ss_pred cCCCCChHH-HHHHHHHhHHhhhhhccCceE-EEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHH
Q psy15555 298 FRPEKDHPL-QLRAMYQLRQIISEELWDNLK-LIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS 375 (488)
Q Consensus 298 ~~~~k~~~~-ll~a~~~l~~~~~~~~~~~~~-l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~ 375 (488)
....|+... ++++++.+.+ ++.. ++++|.+. . +++++.++++ .++|.+.|++ +++..+|+
T Consensus 190 ~~~~~~~~~~l~~a~~~l~~-------~~~~~~~i~G~g~------~-~~l~~~~~~~--~~~v~~~g~~--~~~~~~l~ 251 (350)
T cd03785 190 SQGARAINEAVPEALAELLR-------KRLQVIHQTGKGD------L-EEVKKAYEEL--GVNYEVFPFI--DDMAAAYA 251 (350)
T ss_pred cHhHHHHHHHHHHHHHHhhc-------cCeEEEEEcCCcc------H-HHHHHHHhcc--CCCeEEeehh--hhHHHHHH
Confidence 666666654 4588887763 3555 44677662 1 5667777665 4689999998 89999999
Q ss_pred hCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCC--------CccceeccCCCccccceecC----CHHHHHHHHHHHH
Q psy15555 376 EGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGG--------PKMDIVIEDPETCRNGFLAC----DEVEYAQTIKLIL 443 (488)
Q Consensus 376 ~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~--------~~~eiv~~~~~~~~~g~~~~----~~~~l~~~i~~ll 443 (488)
.||+++.+| ++.+++|||++|+|||+++.++ +. +.+.+. ++|++++ |+++++++|.+++
T Consensus 252 ~ad~~v~~s----g~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~-~~l~~~----g~g~~v~~~~~~~~~l~~~i~~ll 322 (350)
T cd03785 252 AADLVISRA----GASTVAELAALGLPAILIPLPYAADDHQTANA-RALVKA----GAAVLIPQEELTPERLAAALLELL 322 (350)
T ss_pred hcCEEEECC----CHhHHHHHHHhCCCEEEeecCCCCCCcHHHhH-HHHHhC----CCEEEEecCCCCHHHHHHHHHHHh
Confidence 999999755 2688999999999999987643 12 445555 6888876 7999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHhhcCHHHHHH
Q psy15555 444 HLSQDTKTRISQNAVSSVDRFSMEEFKN 471 (488)
Q Consensus 444 ~~~~~~~~~~~~~a~~~~~~~s~~~~~~ 471 (488)
+ +++.+++|++++++.++.+..+++++
T Consensus 323 ~-~~~~~~~~~~~~~~~~~~~~~~~i~~ 349 (350)
T cd03785 323 S-DPERLKAMAEAARSLARPDAAERIAD 349 (350)
T ss_pred c-CHHHHHHHHHHHHhcCCCCHHHHHHh
Confidence 8 99999999999998877777776653
No 74
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.94 E-value=9.8e-25 Score=212.78 Aligned_cols=264 Identities=13% Similarity=0.066 Sum_probs=186.0
Q ss_pred HHHHHHhhhcCCcEEEecCCccchhhhhhhhC--CCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHH
Q psy15555 149 ILGVEALLSFQPDIYIDTMGYAFTYPLFSYIG--GSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLF 226 (488)
Q Consensus 149 ~~~~~~l~~~~pDiii~~~~~~~~~~~~~~~~--~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (488)
..+.+++++.+||+||.+.+... ++.++... ++|++...+....
T Consensus 94 ~~l~~~l~~~~pD~Vi~~~~~~~-~~~~~~~~~~~ip~~~~~td~~~--------------------------------- 139 (380)
T PRK13609 94 KRLKLLLQAEKPDIVINTFPIIA-VPELKKQTGISIPTYNVLTDFCL--------------------------------- 139 (380)
T ss_pred HHHHHHHHHhCcCEEEEcChHHH-HHHHHHhcCCCCCeEEEeCCCCC---------------------------------
Confidence 55778899999999998765443 34443233 4666543321100
Q ss_pred HHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccC-------CCCC-CCCeEEEEeecc
Q psy15555 227 YYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKIT-------HSKT-DGPVKIISVAQF 298 (488)
Q Consensus 227 ~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~-------~~~~-~~~~~i~~~g~~ 298 (488)
...++.+++|.+++.|+.+++.+.+.+..++++.+++++++........ -... +++.++++.|+.
T Consensus 140 -------~~~~~~~~ad~i~~~s~~~~~~l~~~gi~~~ki~v~G~p~~~~f~~~~~~~~~~~~~~l~~~~~~il~~~G~~ 212 (380)
T PRK13609 140 -------HKIWVHREVDRYFVATDHVKKVLVDIGVPPEQVVETGIPIRSSFELKINPDIIYNKYQLCPNKKILLIMAGAH 212 (380)
T ss_pred -------CcccccCCCCEEEECCHHHHHHHHHcCCChhHEEEECcccChHHcCcCCHHHHHHHcCCCCCCcEEEEEcCCC
Confidence 0112456799999999999999998654455888888877532211111 0112 234466677888
Q ss_pred CCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCc
Q psy15555 299 RPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGL 378 (488)
Q Consensus 299 ~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad 378 (488)
...|++..+++++.+. ++++++++|+.. ....+++++.+++.+ ++|+++|++ +++.++|+.||
T Consensus 213 ~~~k~~~~li~~l~~~---------~~~~~viv~G~~----~~~~~~l~~~~~~~~--~~v~~~g~~--~~~~~l~~~aD 275 (380)
T PRK13609 213 GVLGNVKELCQSLMSV---------PDLQVVVVCGKN----EALKQSLEDLQETNP--DALKVFGYV--ENIDELFRVTS 275 (380)
T ss_pred CCCcCHHHHHHHHhhC---------CCcEEEEEeCCC----HHHHHHHHHHHhcCC--CcEEEEech--hhHHHHHHhcc
Confidence 8889998888876532 578888775421 133467777776654 689999998 78999999999
Q ss_pred EEEEcCCCCcCCccHHHHHHcCCcEEEeC-CCCCcc---ceeccCCCccccceecCCHHHHHHHHHHHHccCHHHHHHHH
Q psy15555 379 IGLHAMWNEHFGIGIVECMAAGLIMIAHK-SGGPKM---DIVIEDPETCRNGFLACDEVEYAQTIKLILHLSQDTKTRIS 454 (488)
Q Consensus 379 ~~v~~s~~e~~g~~~lEa~a~G~PvI~~~-~~~~~~---eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~~~~~~~~~~~ 454 (488)
+++. +++|++++|||++|+|||+++ .+|... +.+.+. +.++...|+++++++|.++++ |++.+++|+
T Consensus 276 ~~v~----~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~----G~~~~~~~~~~l~~~i~~ll~-~~~~~~~m~ 346 (380)
T PRK13609 276 CMIT----KPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK----GAAVVIRDDEEVFAKTEALLQ-DDMKLLQMK 346 (380)
T ss_pred EEEe----CCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC----CcEEEECCHHHHHHHHHHHHC-CHHHHHHHH
Confidence 8874 456899999999999999976 344211 233333 445556799999999999999 999999999
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHH
Q psy15555 455 QNAVSSVDRFSMEEFKNGFLTFTQP 479 (488)
Q Consensus 455 ~~a~~~~~~~s~~~~~~~~~~~~~~ 479 (488)
+++++..+.++++.+++.+.+.+..
T Consensus 347 ~~~~~~~~~~s~~~i~~~i~~~~~~ 371 (380)
T PRK13609 347 EAMKSLYLPEPADHIVDDILAENHV 371 (380)
T ss_pred HHHHHhCCCchHHHHHHHHHHhhhh
Confidence 9998877788999999999887754
No 75
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.94 E-value=2.3e-24 Score=208.09 Aligned_cols=329 Identities=12% Similarity=0.119 Sum_probs=209.5
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
|||.|+.. ..||....+..++++|.+++ ++|.++++..+. .....+ . .. +.+..++...+...
T Consensus 1 ~~i~~~~g---~~~g~~~~~~~La~~L~~~g--~eV~vv~~~~~~-~~~~~~----~------~g-~~~~~i~~~~~~~~ 63 (348)
T TIGR01133 1 KKVVLAAG---GTGGHIFPALAVAEELIKRG--VEVLWLGTKRGL-EKRLVP----K------AG-IEFYFIPVGGLRRK 63 (348)
T ss_pred CeEEEEeC---ccHHHHhHHHHHHHHHHhCC--CEEEEEeCCCcc-hhcccc----c------CC-CceEEEeccCcCCC
Confidence 57877642 23355566679999999985 556555653221 111000 0 11 44444444332222
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhh-hhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCc
Q psy15555 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPL-FSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNS 211 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~-~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~ 211 (488)
.....+......+.......+++++.+||+||.+...+..... +....++|++.+.+...
T Consensus 64 ~~~~~l~~~~~~~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~~------------------- 124 (348)
T TIGR01133 64 GSFRLIKTPLKLLKAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNAV------------------- 124 (348)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCCC-------------------
Confidence 2223333333334455667788999999999988655443322 33356778764322100
Q ss_pred cccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCC----CCCC
Q psy15555 212 QRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITH----SKTD 287 (488)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~----~~~~ 287 (488)
.. ...+++.+.+|.++++|+.+++.+ +..+++||++...+.+... ..++
T Consensus 125 --------~~-----------~~~~~~~~~~d~ii~~~~~~~~~~--------~~~~i~n~v~~~~~~~~~~~~~~~~~~ 177 (348)
T TIGR01133 125 --------PG-----------LTNKLLSRFAKKVLISFPGAKDHF--------EAVLVGNPVRQEIRSLPVPRERFGLRE 177 (348)
T ss_pred --------cc-----------HHHHHHHHHhCeeEECchhHhhcC--------CceEEcCCcCHHHhcccchhhhcCCCC
Confidence 00 012334567899999999887665 2379999998655432211 1234
Q ss_pred CCeEEEEeeccCCCCChHH-HHHHHHHhHHhhhhhccCceEEE-EEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCC
Q psy15555 288 GPVKIISVAQFRPEKDHPL-QLRAMYQLRQIISEELWDNLKLI-FIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNL 365 (488)
Q Consensus 288 ~~~~i~~~g~~~~~k~~~~-ll~a~~~l~~~~~~~~~~~~~l~-ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 365 (488)
+.++++++|+....|+... +++|++.+.+. +.+++ ++|++ +. +++++.++++++.+.+.+.
T Consensus 178 ~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~-------~~~~~~~~g~~------~~-~~l~~~~~~~~l~~~v~~~--- 240 (348)
T TIGR01133 178 GKPTILVLGGSQGAKILNELVPKALAKLAEK-------GIQIVHQTGKN------DL-EKVKNVYQELGIEAIVTFI--- 240 (348)
T ss_pred CCeEEEEECCchhHHHHHHHHHHHHHHHhhc-------CcEEEEECCcc------hH-HHHHHHHhhCCceEEecCc---
Confidence 5678899988777777554 45788777542 34443 44443 22 6778878877764444444
Q ss_pred ChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCc------cceeccCCCccccceecC--C--HHHH
Q psy15555 366 PYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPK------MDIVIEDPETCRNGFLAC--D--EVEY 435 (488)
Q Consensus 366 ~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~------~eiv~~~~~~~~~g~~~~--~--~~~l 435 (488)
. .++..+|+.||++|.+| +|.+++|||++|+|+|+++.++.. .+++.+. ++|++++ | ++++
T Consensus 241 ~-~~~~~~l~~ad~~v~~~----g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~----~~G~~~~~~~~~~~~l 311 (348)
T TIGR01133 241 D-ENMAAAYAAADLVISRA----GASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDL----GAGLVIRQKELLPEKL 311 (348)
T ss_pred c-cCHHHHHHhCCEEEECC----ChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHC----CCEEEEecccCCHHHH
Confidence 2 38999999999999754 368899999999999998874321 1466666 7898875 4 9999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHH
Q psy15555 436 AQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKN 471 (488)
Q Consensus 436 ~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~ 471 (488)
++++.++++ |++.+++|++++++.++....+++++
T Consensus 312 ~~~i~~ll~-~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (348)
T TIGR01133 312 LEALLKLLL-DPANLEAMAEAARKLAKPDAAKRIAE 346 (348)
T ss_pred HHHHHHHHc-CHHHHHHHHHHHHhcCCccHHHHHHh
Confidence 999999998 99999999999987776666666554
No 76
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.93 E-value=5.9e-24 Score=206.92 Aligned_cols=267 Identities=14% Similarity=0.090 Sum_probs=187.2
Q ss_pred HHHHHHhhhcCCcEEEecCCccchhhhhhhh--CCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHH
Q psy15555 149 ILGVEALLSFQPDIYIDTMGYAFTYPLFSYI--GGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLF 226 (488)
Q Consensus 149 ~~~~~~l~~~~pDiii~~~~~~~~~~~~~~~--~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (488)
....+.+++.+||+|+++.+.+.. ..++.. .++|++....+.. . .
T Consensus 94 ~~l~~~l~~~kPDvVi~~~p~~~~-~~l~~~~~~~iP~~~v~td~~-----------------------~---~------ 140 (391)
T PRK13608 94 NKLINLLIKEKPDLILLTFPTPVM-SVLTEQFNINIPVATVMTDYR-----------------------L---H------ 140 (391)
T ss_pred HHHHHHHHHhCcCEEEECCcHHHH-HHHHHhcCCCCCEEEEeCCCC-----------------------c---c------
Confidence 567788999999999988654432 333222 3567654322100 0 0
Q ss_pred HHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccC-------CCCC-CCCeEEEEeecc
Q psy15555 227 YYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKIT-------HSKT-DGPVKIISVAQF 298 (488)
Q Consensus 227 ~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~-------~~~~-~~~~~i~~~g~~ 298 (488)
..++.+.+|.+++.|+.+++.+.+.+..++++.++++|++........ -... ++..+++++|++
T Consensus 141 --------~~w~~~~~d~~~v~s~~~~~~l~~~gi~~~ki~v~GiPv~~~f~~~~~~~~~~~~~~l~~~~~~ilv~~G~l 212 (391)
T PRK13608 141 --------KNWITPYSTRYYVATKETKQDFIDVGIDPSTVKVTGIPIDNKFETPIDQKQWLIDNNLDPDKQTILMSAGAF 212 (391)
T ss_pred --------cccccCCCCEEEECCHHHHHHHHHcCCCHHHEEEECeecChHhcccccHHHHHHHcCCCCCCCEEEEECCCc
Confidence 012346789999999999999988654456888988888743221111 0112 234556778999
Q ss_pred CCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCc
Q psy15555 299 RPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGL 378 (488)
Q Consensus 299 ~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad 378 (488)
...|+++.+++++. +.. +++++++++++. .+..+++++. .+..++|.+.|++ +++.++|+.||
T Consensus 213 g~~k~~~~li~~~~---~~~-----~~~~~vvv~G~~----~~l~~~l~~~---~~~~~~v~~~G~~--~~~~~~~~~aD 275 (391)
T PRK13608 213 GVSKGFDTMITDIL---AKS-----ANAQVVMICGKS----KELKRSLTAK---FKSNENVLILGYT--KHMNEWMASSQ 275 (391)
T ss_pred ccchhHHHHHHHHH---hcC-----CCceEEEEcCCC----HHHHHHHHHH---hccCCCeEEEecc--chHHHHHHhhh
Confidence 88899999998753 233 578886664322 1222334433 3334679999998 78999999999
Q ss_pred EEEEcCCCCcCCccHHHHHHcCCcEEEeCC-CCCc---cceeccCCCccccceecCCHHHHHHHHHHHHccCHHHHHHHH
Q psy15555 379 IGLHAMWNEHFGIGIVECMAAGLIMIAHKS-GGPK---MDIVIEDPETCRNGFLACDEVEYAQTIKLILHLSQDTKTRIS 454 (488)
Q Consensus 379 ~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~-~~~~---~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~~~~~~~~~~~ 454 (488)
++|. .++|.++.|||++|+|+|+++. ++.. ..++.+. +.|+.++|++++++++.++++ |++.+++|+
T Consensus 276 l~I~----k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~----G~g~~~~~~~~l~~~i~~ll~-~~~~~~~m~ 346 (391)
T PRK13608 276 LMIT----KPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK----GFGKIADTPEEAIKIVASLTN-GNEQLTNMI 346 (391)
T ss_pred EEEe----CCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC----CcEEEeCCHHHHHHHHHHHhc-CHHHHHHHH
Confidence 9986 3568899999999999999864 3311 0233344 677778899999999999999 999999999
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHhhh
Q psy15555 455 QNAVSSVDRFSMEEFKNGFLTFTQPLFK 482 (488)
Q Consensus 455 ~~a~~~~~~~s~~~~~~~~~~~~~~~~~ 482 (488)
+++++..+.++++.+++.+.+.++++.+
T Consensus 347 ~~~~~~~~~~s~~~i~~~l~~l~~~~~~ 374 (391)
T PRK13608 347 STMEQDKIKYATQTICRDLLDLIGHSSQ 374 (391)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHhhhhhh
Confidence 9999988889999999999999877554
No 77
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.93 E-value=6.6e-24 Score=206.37 Aligned_cols=264 Identities=11% Similarity=0.032 Sum_probs=188.3
Q ss_pred HHHHHHhhhcCCcEEEecCCccchhh--hhhhh-----CCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccch
Q psy15555 149 ILGVEALLSFQPDIYIDTMGYAFTYP--LFSYI-----GGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILT 221 (488)
Q Consensus 149 ~~~~~~l~~~~pDiii~~~~~~~~~~--~~~~~-----~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (488)
....+.+++.+||+||++++++...+ .+... .++|++..+.... .
T Consensus 90 ~~l~~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~----------------------------~ 141 (382)
T PLN02605 90 REVAKGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLG----------------------------T 141 (382)
T ss_pred HHHHHHHHhcCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEECCCC----------------------------C
Confidence 44667888899999999877754433 22212 3566665443210 0
Q ss_pred hhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCC--------CCCCCCeEEE
Q psy15555 222 SFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITH--------SKTDGPVKII 293 (488)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~--------~~~~~~~~i~ 293 (488)
. ...++.+.+|.+++.|+..++.+.+.+..++++.+++++++.+...+... ..++++++++
T Consensus 142 ~-----------~~~w~~~~~d~~~~~s~~~~~~l~~~g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il 210 (382)
T PLN02605 142 C-----------HPTWFHKGVTRCFCPSEEVAKRALKRGLEPSQIRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVL 210 (382)
T ss_pred c-----------CcccccCCCCEEEECCHHHHHHHHHcCCCHHHEEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEE
Confidence 0 01134578999999999999999987655568999999987654322110 1235678999
Q ss_pred EeeccCCCCChHHHHHHHHHhHH----hhhhhccCceE-EEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChH
Q psy15555 294 SVAQFRPEKDHPLQLRAMYQLRQ----IISEELWDNLK-LIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYE 368 (488)
Q Consensus 294 ~~g~~~~~k~~~~ll~a~~~l~~----~~~~~~~~~~~-l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 368 (488)
++|+..+.|+...+++++..+.. .. ++.+ ++++|+++ +..+++++. ....+|.++|++ +
T Consensus 211 ~~Gg~~g~~~~~~li~~l~~~~~~~~~~~-----~~~~~~vi~G~~~-----~~~~~L~~~----~~~~~v~~~G~~--~ 274 (382)
T PLN02605 211 LMGGGEGMGPLEETARALGDSLYDKNLGK-----PIGQVVVICGRNK-----KLQSKLESR----DWKIPVKVRGFV--T 274 (382)
T ss_pred EECCCcccccHHHHHHHHHHhhccccccC-----CCceEEEEECCCH-----HHHHHHHhh----cccCCeEEEecc--c
Confidence 99999999999999999876531 12 4555 56777652 222444433 223569999999 6
Q ss_pred HHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCC-----CCCccceeccCCCccccceecCCHHHHHHHHHHHH
Q psy15555 369 DMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKS-----GGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLIL 443 (488)
Q Consensus 369 el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~-----~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll 443 (488)
++.++|+.||++|..+ +|.+++|||+||+|+|+++. .++. +.+.+. +.|+.+.|++++++++.+++
T Consensus 275 ~~~~l~~aaDv~V~~~----g~~ti~EAma~g~PvI~~~~~pgqe~gn~-~~i~~~----g~g~~~~~~~~la~~i~~ll 345 (382)
T PLN02605 275 NMEEWMGACDCIITKA----GPGTIAEALIRGLPIILNGYIPGQEEGNV-PYVVDN----GFGAFSESPKEIARIVAEWF 345 (382)
T ss_pred cHHHHHHhCCEEEECC----CcchHHHHHHcCCCEEEecCCCccchhhH-HHHHhC----CceeecCCHHHHHHHHHHHH
Confidence 8999999999999754 57899999999999999985 2333 334444 57877789999999999999
Q ss_pred ccC-HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q psy15555 444 HLS-QDTKTRISQNAVSSVDRFSMEEFKNGFLTFT 477 (488)
Q Consensus 444 ~~~-~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~ 477 (488)
. + ++.+++|++++++.....+.+.+++.+.+..
T Consensus 346 ~-~~~~~~~~m~~~~~~~~~~~a~~~i~~~l~~~~ 379 (382)
T PLN02605 346 G-DKSDELEAMSENALKLARPEAVFDIVHDLHELV 379 (382)
T ss_pred c-CCHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Confidence 8 6 9999999999998887778888877776554
No 78
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.92 E-value=8.3e-23 Score=212.08 Aligned_cols=289 Identities=12% Similarity=0.145 Sum_probs=210.9
Q ss_pred HHhhhcCCc-EEEecCCccchhhhh-h-hhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHH
Q psy15555 153 EALLSFQPD-IYIDTMGYAFTYPLF-S-YIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYK 229 (488)
Q Consensus 153 ~~l~~~~pD-iii~~~~~~~~~~~~-~-~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (488)
++.+..+|| +|..+..+..++|.. + .....++.+++|.|+.+.++...+..+ ..
T Consensus 140 ~i~~~~~~~d~vWvhDYhL~llp~~lR~~~~~~~igfFlHiPFPs~e~fr~lp~r-----------------------~~ 196 (797)
T PLN03063 140 VVKENYEEGDVVWCHDYHLMFLPQYLKEYNNKMKVGWFLHTPFPSSEIYKTLPSR-----------------------SE 196 (797)
T ss_pred HHHHhcCCCCEEEEecchhhhHHHHHHHhCCCCcEEEEecCCCCCHHHHhhCCCH-----------------------HH
Confidence 334555665 665555445555533 2 245778999999999776654422211 01
Q ss_pred HHHHHHHHHhcccCEEEEcChhHHHHHHHHh----------------ccCCceEEEcCCCCchhhhccCCC---------
Q psy15555 230 VFALLYSHVGKYSDIIMVNSSWTEEHVIQLW----------------NCQLKTYKLYPPCDTEDLKKITHS--------- 284 (488)
Q Consensus 230 ~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~----------------~~~~k~~vi~~~~d~~~~~~~~~~--------- 284 (488)
++ ..+-.+|.|-+++...++.|.+.. +...++.++|+|+|.+.+.+....
T Consensus 197 il-----~gll~aDligF~t~~y~r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~ 271 (797)
T PLN03063 197 LL-----RAVLTADLIGFHTYDFARHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKE 271 (797)
T ss_pred HH-----HHHhcCCEEEeCCHHHHHHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHH
Confidence 11 133467999999999988887621 112368899999999887643210
Q ss_pred ---CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCce----EEEEEecCCCCCcHHHHHHHHHHHHhcC--C
Q psy15555 285 ---KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNL----KLIFIGSTRNEEDEVCVKDMQDLCKHLS--L 355 (488)
Q Consensus 285 ---~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~----~l~ivG~~~~~~~~~~~~~l~~~~~~~~--l 355 (488)
...++++++++||+++.||+..+++|+.++.+++ |++ .|+.++ +|...+....+++++.++++. +
T Consensus 272 lr~~~~~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~-----P~~~~kvvLvqia-~psr~~~~~y~~l~~~v~~l~g~I 345 (797)
T PLN03063 272 LKRFFAGRKVILGVDRLDMIKGIPQKYLAFEKFLEEN-----PEWRDKVMLVQIA-VPTRNDVPEYQKLKSQVHELVGRI 345 (797)
T ss_pred HHHhcCCCeEEEEecccccccCHHHHHHHHHHHHHhC-----ccccCcEEEEEEe-cCCCCchHHHHHHHHHHHHHHHHh
Confidence 1235789999999999999999999999998887 664 344343 232211122255666665542 2
Q ss_pred CC--------cEEE-ecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCc----EEEeCCCCCccceeccCCCc
Q psy15555 356 EN--------NVEF-KVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLI----MIAHKSGGPKMDIVIEDPET 422 (488)
Q Consensus 356 ~~--------~v~~-~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~P----vI~~~~~~~~~eiv~~~~~~ 422 (488)
.. .|++ .+.++.+|+..+|+.||+|+.||..||+|++++||||||+| +|.|..+|.. +.+.
T Consensus 346 n~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~-~~l~----- 419 (797)
T PLN03063 346 NGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAG-QSLG----- 419 (797)
T ss_pred hcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcCch-hhhc-----
Confidence 11 2333 35789999999999999999999999999999999999999 9999998886 5542
Q ss_pred cccceecC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhh
Q psy15555 423 CRNGFLAC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLFK 482 (488)
Q Consensus 423 ~~~g~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~ 482 (488)
.+|++++ |+++++++|.++++++++++++..++.++.+.++++...++.+++.+++...
T Consensus 420 -~~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~~~~~~~Wa~~fl~~l~~~~~ 480 (797)
T PLN03063 420 -AGALLVNPWNITEVSSAIKEALNMSDEERETRHRHNFQYVKTHSAQKWADDFMSELNDIIV 480 (797)
T ss_pred -CCeEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhh
Confidence 3588876 9999999999999988999999999999999999999999999998887754
No 79
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.92 E-value=1.7e-22 Score=195.56 Aligned_cols=313 Identities=12% Similarity=0.056 Sum_probs=195.7
Q ss_pred hcCCcEEEecCCccchhhhh--h-hhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHHHHHH
Q psy15555 157 SFQPDIYIDTMGYAFTYPLF--S-YIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFAL 233 (488)
Q Consensus 157 ~~~pDiii~~~~~~~~~~~~--~-~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (488)
..++||+|.++ |....... + ...++|.|++.|....-+.++.-. ...+++-+.+.... ....... .....
T Consensus 146 ~~~~dViH~He-Wm~g~a~~~lK~~~~~VptVfTtHAT~~GR~l~~g~---~~~y~~l~~~~~d~-eA~~~~I--~~r~~ 218 (590)
T cd03793 146 DEPAVVAHFHE-WQAGVGLPLLRKRKVDVSTIFTTHATLLGRYLCAGN---VDFYNNLDYFDVDK-EAGKRGI--YHRYC 218 (590)
T ss_pred CCCCeEEEEcc-hhHhHHHHHHHHhCCCCCEEEEecccccccccccCC---cccchhhhhcchhh-hhhcccc--hHHHH
Confidence 45789999887 44444433 2 234778999999654322110000 00000000000000 0000000 11223
Q ss_pred HHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCC------------------------CCCCCC
Q psy15555 234 LYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITH------------------------SKTDGP 289 (488)
Q Consensus 234 ~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~------------------------~~~~~~ 289 (488)
+|+.+...||.++++|+.+++....+++.+... |+|||+|.+.|.+... ....++
T Consensus 219 iE~~aa~~Ad~fttVS~it~~E~~~Ll~~~pd~-ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~~~~d~ 297 (590)
T cd03793 219 IERAAAHCAHVFTTVSEITAYEAEHLLKRKPDV-VLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYDFDLDK 297 (590)
T ss_pred HHHHHHhhCCEEEECChHHHHHHHHHhCCCCCE-EeCCCcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcCCCCCC
Confidence 677888999999999999999999998877655 9999999988754431 012355
Q ss_pred eEEEE-eeccCC-CCChHHHHHHHHHhHHhhhhhc--cCceEEEEEecCCCCCcH------HHHHHHHHHHHh-------
Q psy15555 290 VKIIS-VAQFRP-EKDHPLQLRAMYQLRQIISEEL--WDNLKLIFIGSTRNEEDE------VCVKDMQDLCKH------- 352 (488)
Q Consensus 290 ~~i~~-~g~~~~-~k~~~~ll~a~~~l~~~~~~~~--~~~~~l~ivG~~~~~~~~------~~~~~l~~~~~~------- 352 (488)
+++++ +||++. +||++.+|+|+.++........ ..=+-|++++.....-+. .-.+++++-+++
T Consensus 298 tli~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~ 377 (590)
T cd03793 298 TLYFFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGK 377 (590)
T ss_pred eEEEEEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhh
Confidence 66666 799998 9999999999999987432110 012456777765221100 111112111111
Q ss_pred ------------------------------------------------------------cCCC----Cc--EEEecC-C
Q psy15555 353 ------------------------------------------------------------LSLE----NN--VEFKVN-L 365 (488)
Q Consensus 353 ------------------------------------------------------------~~l~----~~--v~~~g~-~ 365 (488)
.+|. ++ |+|++. +
T Consensus 378 ~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L 457 (590)
T cd03793 378 RLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFL 457 (590)
T ss_pred hhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEccccc
Confidence 1111 22 444432 1
Q ss_pred C------hHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCc---cceeccCCCcccccee-cC-----
Q psy15555 366 P------YEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPK---MDIVIEDPETCRNGFL-AC----- 430 (488)
Q Consensus 366 ~------~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~---~eiv~~~~~~~~~g~~-~~----- 430 (488)
+ ..+..++|+.||++|+||.+|+||++++|||+||+|||+++.+|.. .|++.++ ...|+. .+
T Consensus 458 ~~~~~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~---~~~gi~V~~r~~~~ 534 (590)
T cd03793 458 SSTNPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDP---ESYGIYIVDRRFKS 534 (590)
T ss_pred CCCCCcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccC---CCceEEEecCCccc
Confidence 1 2357889999999999999999999999999999999999998773 1454432 023444 41
Q ss_pred ---CHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHhhcCHHHHHHHHHHHHHHhhh
Q psy15555 431 ---DEVEYAQTIKLILHLSQDTKTRISQNAV--SSVDRFSMEEFKNGFLTFTQPLFK 482 (488)
Q Consensus 431 ---~~~~l~~~i~~ll~~~~~~~~~~~~~a~--~~~~~~s~~~~~~~~~~~~~~~~~ 482 (488)
+.++++++|.++++ . +.++.+.+++. +.++.|+|+++++.|.+.+.-+++
T Consensus 535 ~~e~v~~La~~m~~~~~-~-~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 535 PDESVQQLTQYMYEFCQ-L-SRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred hHHHHHHHHHHHHHHhC-C-cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 57889999999886 4 45555655554 666999999999999999987764
No 80
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.91 E-value=5.4e-22 Score=192.47 Aligned_cols=214 Identities=16% Similarity=0.101 Sum_probs=157.7
Q ss_pred HHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCC-------CCCCCeEEEEeeccCCCCChH
Q psy15555 233 LLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHS-------KTDGPVKIISVAQFRPEKDHP 305 (488)
Q Consensus 233 ~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~-------~~~~~~~i~~~g~~~~~k~~~ 305 (488)
..++.+++++|.|++.|+..++.+.+. + .++.+++|++|.+.|.+.... ...++++++|+|++.+.++.+
T Consensus 145 ~~e~~~~~~ad~vi~~S~~l~~~~~~~-~--~~i~~i~ngvd~~~f~~~~~~~~~~~~~~~~~~~~i~y~G~l~~~~d~~ 221 (373)
T cd04950 145 EAERRLLKRADLVFTTSPSLYEAKRRL-N--PNVVLVPNGVDYEHFAAARDPPPPPADLAALPRPVIGYYGAIAEWLDLE 221 (373)
T ss_pred HHHHHHHHhCCEEEECCHHHHHHHhhC-C--CCEEEcccccCHHHhhcccccCCChhHHhcCCCCEEEEEeccccccCHH
Confidence 467778899999999999999988874 3 579999999999888654321 224578999999999877765
Q ss_pred HHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCC
Q psy15555 306 LQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMW 385 (488)
Q Consensus 306 ~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~ 385 (488)
.+.++. +.. |+++++++|.++.. .+..++ .. .+||+++|.++++++..+|+.+|+++.|+.
T Consensus 222 ll~~la----~~~-----p~~~~vliG~~~~~------~~~~~~---~~-~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~ 282 (373)
T cd04950 222 LLEALA----KAR-----PDWSFVLIGPVDVS------IDPSAL---LR-LPNVHYLGPKPYKELPAYLAGFDVAILPFR 282 (373)
T ss_pred HHHHHH----HHC-----CCCEEEEECCCcCc------cChhHh---cc-CCCEEEeCCCCHHHHHHHHHhCCEEecCCc
Confidence 444332 334 89999999987322 111111 11 368999999999999999999999999984
Q ss_pred C-----CcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC-CHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy15555 386 N-----EHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKLILHLSQDTKTRISQNAVS 459 (488)
Q Consensus 386 ~-----e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~~~~~~~~~~~~~a~~ 459 (488)
. +++|++++||||+|+|||+++.+ ++.+.. +.++++. |+++++++|.+++..+...+.+ ++.+
T Consensus 283 ~~~~~~~~~P~Kl~EylA~G~PVVat~~~----~~~~~~----~~~~~~~~d~~~~~~ai~~~l~~~~~~~~~---~~~~ 351 (373)
T cd04950 283 LNELTRATSPLKLFEYLAAGKPVVATPLP----EVRRYE----DEVVLIADDPEEFVAAIEKALLEDGPARER---RRLR 351 (373)
T ss_pred cchhhhcCCcchHHHHhccCCCEEecCcH----HHHhhc----CcEEEeCCCHHHHHHHHHHHHhcCCchHHH---HHHH
Confidence 3 35789999999999999999754 444443 3355544 8999999999976523332222 1222
Q ss_pred HHhhcCHHHHHHHHHHHHHH
Q psy15555 460 SVDRFSMEEFKNGFLTFTQP 479 (488)
Q Consensus 460 ~~~~~s~~~~~~~~~~~~~~ 479 (488)
.++.+||+..++++.+.+++
T Consensus 352 ~~~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 352 LAAQNSWDARAAEMLEALQE 371 (373)
T ss_pred HHHHCCHHHHHHHHHHHHHh
Confidence 45899999999999876654
No 81
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.91 E-value=3.6e-23 Score=178.39 Aligned_cols=159 Identities=28% Similarity=0.459 Sum_probs=141.9
Q ss_pred CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHh-hhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEec
Q psy15555 285 KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQI-ISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKV 363 (488)
Q Consensus 285 ~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~-~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g 363 (488)
...++++++++|++.+.||++.+++|+..+.++ . +++.++|+|.++ ....+...++..++.+++.++|
T Consensus 11 ~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~-----~~~~l~i~G~~~------~~~~~~~~~~~~~~~~~i~~~~ 79 (172)
T PF00534_consen 11 IPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKN-----PNYKLVIVGDGE------YKKELKNLIEKLNLKENIIFLG 79 (172)
T ss_dssp T-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHH-----TTEEEEEESHCC------HHHHHHHHHHHTTCGTTEEEEE
T ss_pred CCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcC-----CCeEEEEEcccc------cccccccccccccccccccccc
Confidence 346789999999999999999999999999875 5 899999999663 3377888999999989999999
Q ss_pred CCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHH
Q psy15555 364 NLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKL 441 (488)
Q Consensus 364 ~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ 441 (488)
.++.+++..+|+.||+++.||..|++|.+++|||++|+|||+++.++.. +++.++ .+|++++ |+++++++|.+
T Consensus 80 ~~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~-e~~~~~----~~g~~~~~~~~~~l~~~i~~ 154 (172)
T PF00534_consen 80 YVPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNN-EIINDG----VNGFLFDPNDIEELADAIEK 154 (172)
T ss_dssp SHSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHH-HHSGTT----TSEEEESTTSHHHHHHHHHH
T ss_pred cccccccccccccceeccccccccccccccccccccccceeeccccCCc-eeeccc----cceEEeCCCCHHHHHHHHHH
Confidence 9988999999999999999999999999999999999999999988886 999888 7899986 88999999999
Q ss_pred HHccCHHHHHHHHHHHHHH
Q psy15555 442 ILHLSQDTKTRISQNAVSS 460 (488)
Q Consensus 442 ll~~~~~~~~~~~~~a~~~ 460 (488)
+++ +++.++.|+++++++
T Consensus 155 ~l~-~~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 155 LLN-DPELRQKLGKNARER 172 (172)
T ss_dssp HHH-HHHHHHHHHHHHHHH
T ss_pred HHC-CHHHHHHHHHHhcCC
Confidence 999 999999999999863
No 82
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.90 E-value=8.7e-22 Score=205.27 Aligned_cols=289 Identities=13% Similarity=0.189 Sum_probs=204.5
Q ss_pred HHhhhcCCc-EEEecCCccchhhhh-h-hhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHH
Q psy15555 153 EALLSFQPD-IYIDTMGYAFTYPLF-S-YIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYK 229 (488)
Q Consensus 153 ~~l~~~~pD-iii~~~~~~~~~~~~-~-~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (488)
+.....+|| +|..+......+|.. + .....++.+++|.|+...+....++.+ ..
T Consensus 126 ~~~~~~~~~d~vwvhDYhl~l~p~~lr~~~~~~~igfFlH~pfP~~~~f~~lp~~-----------------------~~ 182 (726)
T PRK14501 126 AIAAIARPGDVVWVHDYQLMLLPAMLRERLPDARIGFFLHIPFPSFEVFRLLPWR-----------------------EE 182 (726)
T ss_pred HHHHhcCCCCEEEEeCchhhhHHHHHHhhCCCCcEEEEeeCCCCChHHHhhCCCh-----------------------HH
Confidence 444555665 665555444445532 2 234678899999998766554322211 01
Q ss_pred HHHHHHHHHhcccCEEEEcChhHHHHHHHHh----c------------cCCceEEEcCCCCchhhhccCC----------
Q psy15555 230 VFALLYSHVGKYSDIIMVNSSWTEEHVIQLW----N------------CQLKTYKLYPPCDTEDLKKITH---------- 283 (488)
Q Consensus 230 ~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~----~------------~~~k~~vi~~~~d~~~~~~~~~---------- 283 (488)
++ ..+-.+|.|-+++....+.|.+.. + ...++.++|+|+|.+.+.+...
T Consensus 183 ll-----~~ll~~Dligf~t~~~~r~Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~ 257 (726)
T PRK14501 183 IL-----EGLLGADLIGFHTYDYVRHFLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRR 257 (726)
T ss_pred HH-----HHHhcCCeEEeCCHHHHHHHHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHH
Confidence 11 133567999999999888776531 1 1226889999999998865431
Q ss_pred --CCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCc----eEEEEEecCCCCC---cHHHHHHHHHHHHhcC
Q psy15555 284 --SKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDN----LKLIFIGSTRNEE---DEVCVKDMQDLCKHLS 354 (488)
Q Consensus 284 --~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~----~~l~ivG~~~~~~---~~~~~~~l~~~~~~~~ 354 (488)
...+++++++++||+.+.||+..+++|+.++.+++ |+ ++|+++|.+.... ..+..+++.+++.+.+
T Consensus 258 lr~~~~~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~-----p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in 332 (726)
T PRK14501 258 LRQDLRGRKIILSIDRLDYTKGIPRRLLAFERFLEKN-----PEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRIN 332 (726)
T ss_pred HHHHcCCCEEEEEecCcccccCHHHHHHHHHHHHHhC-----ccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 11246779999999999999999999999998877 54 6888887431111 1123334444433321
Q ss_pred -------CCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCC-----cEEEeCCCCCccceeccCCCc
Q psy15555 355 -------LENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGL-----IMIAHKSGGPKMDIVIEDPET 422 (488)
Q Consensus 355 -------l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~-----PvI~~~~~~~~~eiv~~~~~~ 422 (488)
..+.+.+.+.++.+|+..+|+.||+++.||..|++|++++|||+||+ ||++...|+.. ++.
T Consensus 333 ~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~-~l~------ 405 (726)
T PRK14501 333 GEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA-ELA------ 405 (726)
T ss_pred hhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccchhH-HhC------
Confidence 11234577889999999999999999999999999999999999955 66666556554 553
Q ss_pred cccceecC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhh
Q psy15555 423 CRNGFLAC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLFKV 483 (488)
Q Consensus 423 ~~~g~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~~ 483 (488)
.|++++ |+++++++|.+++.++++++.+..+++++.+.+|||+.+++++++.++++..+
T Consensus 406 --~~llv~P~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~~~~~~~w~~~~l~~l~~~~~~ 466 (726)
T PRK14501 406 --EALLVNPNDIEGIAAAIKRALEMPEEEQRERMQAMQERLRRYDVHKWASDFLDELREAAEK 466 (726)
T ss_pred --cCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Confidence 377766 99999999999998556677777778888899999999999999999987543
No 83
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.88 E-value=6.4e-20 Score=177.34 Aligned_cols=405 Identities=14% Similarity=0.078 Sum_probs=250.9
Q ss_pred cEEEEeccCC---CCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccc--cC------------
Q psy15555 53 KTVAFFHPYC---NAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIV--LP------------ 115 (488)
Q Consensus 53 ~rI~~~~~~~---~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------ 115 (488)
|||+++.... ...||-.-++..+.++|++++ +++.++.+..+.......+..+...... ..
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g--~~v~v~lP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRG--VDVRVLLPSYPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYG 78 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcC--CeEEEEcCCchhhhhhhccccceeeEeeeeecccceEEEEEeec
Confidence 7888776543 357788899999999999984 6666666654432332322211111111 00
Q ss_pred -CCeeEEEEeeccceeec---cCchhHHHHHHHHHHHHHHHHHhhh----cCCcEEEecCCccchhhhhhh-----hCCC
Q psy15555 116 -DQVINFVYLYRRKFVEA---SLYPYFTLLGQSIGSMILGVEALLS----FQPDIYIDTMGYAFTYPLFSY-----IGGS 182 (488)
Q Consensus 116 -~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~----~~pDiii~~~~~~~~~~~~~~-----~~~~ 182 (488)
..++.+..+..+....+ ..+.......++-.........+.. ..|||||.+.....+++.... ...+
T Consensus 79 ~~~~v~~~lid~~~~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~L~~~~lk~~~~~~~~i 158 (487)
T COG0297 79 KDGGVDLYLIDNPALFKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTGLLPAYLKQRYRSGYII 158 (487)
T ss_pred ccCCCcEEEecChhhcCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHHHHHHHHhhcccccccC
Confidence 00022333332222222 1111111111111112223333322 469999998855555554422 2367
Q ss_pred eeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHH-Hhc
Q psy15555 183 KVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQ-LWN 261 (488)
Q Consensus 183 ~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~-~~~ 261 (488)
|.++++|.-...--+ ..............+. ... ..++ ....+.+.-+..+|.+.++|+..++.+.. .++
T Consensus 159 ~tVfTIHNl~~qG~~-~~~~~~~lgLp~~~~~-~~~------l~~~-~~~~~lK~gi~~ad~vttVSptYa~Ei~t~~~g 229 (487)
T COG0297 159 PTVFTIHNLAYQGLF-RLQYLEELGLPFEAYA-SFG------LEFY-GQISFLKGGLYYADAVTTVSPTYAGEIYTPEYG 229 (487)
T ss_pred CeEEEEeeceeeccc-chhhHHHhcCCHHHhh-hce------eeec-CcchhhhhhheeccEEEEECHHHHHhhcccccc
Confidence 889999942210000 0000000000000000 000 0000 01134555678899999999999888872 121
Q ss_pred ---------cCCceEEEcCCCCchhhhccCCC----------------------------CCCCCeEEEEeeccCCCCCh
Q psy15555 262 ---------CQLKTYKLYPPCDTEDLKKITHS----------------------------KTDGPVKIISVAQFRPEKDH 304 (488)
Q Consensus 262 ---------~~~k~~vi~~~~d~~~~~~~~~~----------------------------~~~~~~~i~~~g~~~~~k~~ 304 (488)
...++.-|.|++|.+.+.+.... ...+.+.+.++||+..+||+
T Consensus 230 ~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~ 309 (487)
T COG0297 230 EGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDVDLPGPLFGFVSRLTAQKGL 309 (487)
T ss_pred ccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCCCCCCcEEEEeeccccccch
Confidence 11266778888887665443311 12356899999999999999
Q ss_pred HHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcC
Q psy15555 305 PLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAM 384 (488)
Q Consensus 305 ~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s 384 (488)
+.+++++..+.++ ..++++.|.+ +. +.-+.+.++++.+. .++...-..+..-...+|+.||++++||
T Consensus 310 dl~~~~i~~~l~~-------~~~~vilG~g-d~---~le~~~~~la~~~~--~~~~~~i~~~~~la~~i~agaD~~lmPS 376 (487)
T COG0297 310 DLLLEAIDELLEQ-------GWQLVLLGTG-DP---ELEEALRALASRHP--GRVLVVIGYDEPLAHLIYAGADVILMPS 376 (487)
T ss_pred hHHHHHHHHHHHh-------CceEEEEecC-cH---HHHHHHHHHHHhcC--ceEEEEeeecHHHHHHHHhcCCEEEeCC
Confidence 9999999999876 4899999998 22 56677777777765 3565555556667788999999999999
Q ss_pred CCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCc----cccceecC--CHHHHHHHHHHHHc---cCHHHHHHHHH
Q psy15555 385 WNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPET----CRNGFLAC--DEVEYAQTIKLILH---LSQDTKTRISQ 455 (488)
Q Consensus 385 ~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~----~~~g~~~~--~~~~l~~~i~~ll~---~~~~~~~~~~~ 455 (488)
..|++|++-++||.+|+++|+...||.. |.+.+.+.. ..+|+++. |+++++.+|.+.+. .++...+.+..
T Consensus 377 rfEPcGL~ql~amryGtvpIv~~tGGLa-dTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~~w~~~~~ 455 (487)
T COG0297 377 RFEPCGLTQLYAMRYGTLPIVRETGGLA-DTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPLLWRKVQP 455 (487)
T ss_pred cCcCCcHHHHHHHHcCCcceEcccCCcc-ceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 9999999999999999999999999998 655543111 37898875 99999999987654 12333555555
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHhhhhh
Q psy15555 456 NAVSSVDRFSMEEFKNGFLTFTQPLFKVM 484 (488)
Q Consensus 456 ~a~~~~~~~s~~~~~~~~~~~~~~~~~~~ 484 (488)
++.. ..|||+..++++.+.|+.++...
T Consensus 456 ~~m~--~d~sw~~sa~~y~~lY~~~~~~~ 482 (487)
T COG0297 456 NAMG--ADFSWDLSAKEYVELYKPLLSKP 482 (487)
T ss_pred hhcc--cccCchhHHHHHHHHHHHHhccc
Confidence 5544 79999999999999999987654
No 84
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.88 E-value=7.1e-20 Score=177.94 Aligned_cols=286 Identities=15% Similarity=0.143 Sum_probs=212.8
Q ss_pred HHhhhcCCc-EEEecCCccchhhhh-h-hhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHH
Q psy15555 153 EALLSFQPD-IYIDTMGYAFTYPLF-S-YIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYK 229 (488)
Q Consensus 153 ~~l~~~~pD-iii~~~~~~~~~~~~-~-~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (488)
++.+..+|| +|..+......+|.. + .....++.+++|.|+...++...++.+ ..
T Consensus 125 ~i~~~~~~~d~vWVhDYhL~llp~~LR~~~~~~~IgfFlHiPFPs~eifr~LP~r-----------------------~~ 181 (487)
T TIGR02398 125 AACLEAAEGATVWVHDYNLWLVPGYIRQLRPDLKIAFFHHTPFPSADVFNILPWR-----------------------EQ 181 (487)
T ss_pred HHHHhcCCCCEEEEecchhhHHHHHHHHhCCCCeEEEEeeCCCCChHHHhhCCch-----------------------HH
Confidence 444556665 655554444444432 2 234678899999999877664422211 11
Q ss_pred HHHHHHHHHhcccCEEEEcChhHHHHHHHHhc-------------------------------------cCCceEEEcCC
Q psy15555 230 VFALLYSHVGKYSDIIMVNSSWTEEHVIQLWN-------------------------------------CQLKTYKLYPP 272 (488)
Q Consensus 230 ~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~-------------------------------------~~~k~~vi~~~ 272 (488)
++ ..+-.+|.|-+++...++.|.+... ...++.++|.|
T Consensus 182 ll-----~glL~aDliGFqt~~y~~~Fl~~~~r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiG 256 (487)
T TIGR02398 182 II-----GSLLCCDYIGFHIPRYVENFVDAARGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVG 256 (487)
T ss_pred HH-----HHHhcCCeEEeCCHHHHHHHHHHHHHHhCCccccccccccccccccccccccccccceeECCEEEEEEEEECE
Confidence 11 1234579999999999988876221 11147889999
Q ss_pred CCchhhhccCCC------------CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCc----eEEEEEecCCC
Q psy15555 273 CDTEDLKKITHS------------KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDN----LKLIFIGSTRN 336 (488)
Q Consensus 273 ~d~~~~~~~~~~------------~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~----~~l~ivG~~~~ 336 (488)
+|++.+...... ...++.+|+.++|++..||+...++|+.++.+++ |+ +.|+++|....
T Consensus 257 ID~~~f~~~~~~~~~~~~~~~lr~~~~~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~-----Pe~~gkv~Lvqi~~psr 331 (487)
T TIGR02398 257 TDPERIRSALAAASIREMMERIRSELAGVKLILSAERVDYTKGILEKLNAYERLLERR-----PELLGKVTLVTACVPAA 331 (487)
T ss_pred ecHHHHHHHhcCchHHHHHHHHHHHcCCceEEEEecccccccCHHHHHHHHHHHHHhC-----ccccCceEEEEEeCCCc
Confidence 999988554211 1236789999999999999999999999999888 64 68888886543
Q ss_pred CCc---HHHHHHHHHHHHhc-------CCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCC----c
Q psy15555 337 EED---EVCVKDMQDLCKHL-------SLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGL----I 402 (488)
Q Consensus 337 ~~~---~~~~~~l~~~~~~~-------~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~----P 402 (488)
.+. .+..+++++++.+. +..+-+.+.+.++.+++..+|+.||+++.+|..||++++..|+++|+. |
T Consensus 332 ~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~Gv 411 (487)
T TIGR02398 332 SGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGV 411 (487)
T ss_pred ccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCC
Confidence 222 23445666666554 445567888999999999999999999999999999999999999988 9
Q ss_pred EEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q psy15555 403 MIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQP 479 (488)
Q Consensus 403 vI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~ 479 (488)
+|.|..+|.. +.. ..+++++ |+++++++|.+.+++..+++++-.+..++.+.+++....++.+++-+.+
T Consensus 412 LILSefaGaa-~~l-------~~AllVNP~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 412 LVLSEFAGAA-VEL-------KGALLTNPYDPVRMDETIYVALAMPKAEQQARMREMFDAVNYYDVQRWADEFLAAVSP 482 (487)
T ss_pred EEEeccccch-hhc-------CCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhh
Confidence 9999998886 333 2367776 9999999999999988888888888888888999999999988876643
No 85
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.88 E-value=2.8e-20 Score=181.70 Aligned_cols=343 Identities=12% Similarity=0.027 Sum_probs=205.2
Q ss_pred ccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceee
Q psy15555 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVE 131 (488)
Q Consensus 52 ~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 131 (488)
+|||.+.. +.. |+......++++|++.++++.++...+. .......+ .. .++..++..
T Consensus 1 ~~ki~i~~---Ggt-~G~i~~a~l~~~L~~~~~~~~~~~~~~~--~~~~~~~~---~~---------~~~~~l~~~---- 58 (380)
T PRK00025 1 PLRIAIVA---GEV-SGDLLGAGLIRALKARAPNLEFVGVGGP--RMQAAGCE---SL---------FDMEELAVM---- 58 (380)
T ss_pred CceEEEEe---cCc-CHHHHHHHHHHHHHhcCCCcEEEEEccH--HHHhCCCc---cc---------cCHHHhhhc----
Confidence 36887753 223 3554444599999988777777766443 11110000 00 001111111
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCC---ccchhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcc
Q psy15555 132 ASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMG---YAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITH 208 (488)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~---~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~ 208 (488)
..+..+......+.....+.+++++++||++|.+.. ++.....+ ...++|++.+.+... |
T Consensus 59 -g~~~~~~~~~~~~~~~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a-~~~~ip~i~~~~~~~--~------------- 121 (380)
T PRK00025 59 -GLVEVLPRLPRLLKIRRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKL-RKAGIPTIHYVSPSV--W------------- 121 (380)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHH-HHCCCCEEEEeCCch--h-------------
Confidence 112233344445556677889999999999876541 22222122 256889876544210 0
Q ss_pred cCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhh-ccC-----
Q psy15555 209 NNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLK-KIT----- 282 (488)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~-~~~----- 282 (488)
..... ..+.+.+.+|.++++|+..++.+.+. +. ++.+++|++...... +..
T Consensus 122 ------------~~~~~--------~~~~~~~~~d~i~~~~~~~~~~~~~~-g~--~~~~~G~p~~~~~~~~~~~~~~~~ 178 (380)
T PRK00025 122 ------------AWRQG--------RAFKIAKATDHVLALFPFEAAFYDKL-GV--PVTFVGHPLADAIPLLPDRAAARA 178 (380)
T ss_pred ------------hcCch--------HHHHHHHHHhhheeCCccCHHHHHhc-CC--CeEEECcCHHHhcccccChHHHHH
Confidence 00000 01123456799999999999998774 33 377788775322111 000
Q ss_pred -CCCCCCCeE-EEEeeccCCC--CChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhc-CCCC
Q psy15555 283 -HSKTDGPVK-IISVAQFRPE--KDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHL-SLEN 357 (488)
Q Consensus 283 -~~~~~~~~~-i~~~g~~~~~--k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~-~l~~ 357 (488)
-..+.++++ +++.|+...+ +..+.+++++..+.++. |+++++++|+++ +..+++++.+++. ++.
T Consensus 179 ~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~-----~~~~~ii~~~~~-----~~~~~~~~~~~~~~~~~- 247 (380)
T PRK00025 179 RLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRY-----PDLRFVLPLVNP-----KRREQIEEALAEYAGLE- 247 (380)
T ss_pred HcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhC-----CCeEEEEecCCh-----hhHHHHHHHHhhcCCCC-
Confidence 012233444 4555533222 34678899999988776 789999998754 3446777777766 543
Q ss_pred cEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCC-----------------CCCccceeccCC
Q psy15555 358 NVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKS-----------------GGPKMDIVIEDP 420 (488)
Q Consensus 358 ~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~-----------------~~~~~eiv~~~~ 420 (488)
+.+.+ +++..+|+.||+++.+| |.+.+|||++|+|+|++.. ++.. +++.+.
T Consensus 248 -v~~~~----~~~~~~~~~aDl~v~~s-----G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~- 315 (380)
T PRK00025 248 -VTLLD----GQKREAMAAADAALAAS-----GTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLP-NLLAGR- 315 (380)
T ss_pred -eEEEc----ccHHHHHHhCCEEEECc-----cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehH-HHhcCC-
Confidence 44432 58999999999999987 8888999999999998733 2222 444433
Q ss_pred CccccceecC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhh
Q psy15555 421 ETCRNGFLAC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLFK 482 (488)
Q Consensus 421 ~~~~~g~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~ 482 (488)
....+++.+ |++++++.+.++++ |++.+++|++++.+..+.. ....++++.+.+.+++.
T Consensus 316 -~~~~~~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~~ 376 (380)
T PRK00025 316 -ELVPELLQEEATPEKLARALLPLLA-DGARRQALLEGFTELHQQL-RCGADERAAQAVLELLK 376 (380)
T ss_pred -CcchhhcCCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhh
Confidence 001234443 89999999999999 9999999999986665443 23355666666655543
No 86
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.87 E-value=3.1e-20 Score=179.97 Aligned_cols=256 Identities=14% Similarity=0.084 Sum_probs=168.1
Q ss_pred HHHHHHhhhcCCcEEEecCCccchh--hhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHH
Q psy15555 149 ILGVEALLSFQPDIYIDTMGYAFTY--PLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLF 226 (488)
Q Consensus 149 ~~~~~~l~~~~pDiii~~~~~~~~~--~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (488)
..+.+.+++.+||+||.+..+...+ .+++...++|++. ++....+. + ........
T Consensus 76 ~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h-~~~g~~s~---------------------~-~~~~~~~~ 132 (365)
T TIGR00236 76 EGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGH-VEAGLRTG---------------------D-RYSPMPEE 132 (365)
T ss_pred HHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEE-EeCCCCcC---------------------C-CCCCCccH
Confidence 4566788999999999876444333 2334467889753 33211000 0 00000000
Q ss_pred HHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCC-Cchhhhcc---C----CCCCCCCeEEEEee-c
Q psy15555 227 YYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPC-DTEDLKKI---T----HSKTDGPVKIISVA-Q 297 (488)
Q Consensus 227 ~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~-d~~~~~~~---~----~~~~~~~~~i~~~g-~ 297 (488)
..+. ...+.+|.++++|+..++++.+.+..++++.+++|++ |....... . .....++.++++.+ +
T Consensus 133 ~~r~------~~~~~ad~~~~~s~~~~~~l~~~G~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~~~~~~~~vl~~~hr 206 (365)
T TIGR00236 133 INRQ------LTGHIADLHFAPTEQAKDNLLRENVKADSIFVTGNTVIDALLTNVEIAYSSPVLSEFGEDKRYILLTLHR 206 (365)
T ss_pred HHHH------HHHHHHHhccCCCHHHHHHHHHcCCCcccEEEeCChHHHHHHHHHhhccchhHHHhcCCCCCEEEEecCc
Confidence 0010 1123479999999999999998765556899999995 43221111 0 11112234455544 4
Q ss_pred c-CCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh
Q psy15555 298 F-RPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE 376 (488)
Q Consensus 298 ~-~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ 376 (488)
. ...|+++.+++|+.++.++. |+++++++|.+. . ...+. +.+..+..++|.+.+.++..++..+++.
T Consensus 207 ~~~~~k~~~~ll~a~~~l~~~~-----~~~~~vi~~~~~-~---~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 274 (365)
T TIGR00236 207 RENVGEPLENIFKAIREIVEEF-----EDVQIVYPVHLN-P---VVREP---LHKHLGDSKRVHLIEPLEYLDFLNLAAN 274 (365)
T ss_pred hhhhhhHHHHHHHHHHHHHHHC-----CCCEEEEECCCC-h---HHHHH---HHHHhCCCCCEEEECCCChHHHHHHHHh
Confidence 3 23488999999999988776 788888875432 1 11122 2333455578999999988999999999
Q ss_pred CcEEEEcCCCCcCCccHHHHHHcCCcEEEeC-CCCCccceeccCCCccccceecC-CHHHHHHHHHHHHccCHHHHHHHH
Q psy15555 377 GLIGLHAMWNEHFGIGIVECMAAGLIMIAHK-SGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKLILHLSQDTKTRIS 454 (488)
Q Consensus 377 ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~-~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~~~~~~~~~~~ 454 (488)
||+++.+| |..++|||++|+|||++. .++.. +++..+ .+.+++ |++++++++.++++ +++.+++++
T Consensus 275 ad~vv~~S-----g~~~~EA~a~g~PvI~~~~~~~~~-e~~~~g-----~~~lv~~d~~~i~~ai~~ll~-~~~~~~~~~ 342 (365)
T TIGR00236 275 SHLILTDS-----GGVQEEAPSLGKPVLVLRDTTERP-ETVEAG-----TNKLVGTDKENITKAAKRLLT-DPDEYKKMS 342 (365)
T ss_pred CCEEEECC-----hhHHHHHHHcCCCEEECCCCCCCh-HHHhcC-----ceEEeCCCHHHHHHHHHHHHh-ChHHHHHhh
Confidence 99998877 445799999999999974 45553 777654 455555 99999999999999 999998888
Q ss_pred HHH
Q psy15555 455 QNA 457 (488)
Q Consensus 455 ~~a 457 (488)
+++
T Consensus 343 ~~~ 345 (365)
T TIGR00236 343 NAS 345 (365)
T ss_pred hcC
Confidence 766
No 87
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.87 E-value=1.2e-19 Score=172.80 Aligned_cols=250 Identities=17% Similarity=0.111 Sum_probs=170.7
Q ss_pred HHhhhcCC-cEEEecCCccch----hhhhhh--hCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhH
Q psy15555 153 EALLSFQP-DIYIDTMGYAFT----YPLFSY--IGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKL 225 (488)
Q Consensus 153 ~~l~~~~p-Diii~~~~~~~~----~~~~~~--~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (488)
+.+...+| |+||.+.+.... ..++.. ..++|++..+|.-. +.. .... .
T Consensus 57 ~~~~~~~~~Dvv~~~~P~~~~~~~~~~~~~~~k~~~~k~i~~ihD~~------~~~------------------~~~~-~ 111 (333)
T PRK09814 57 GILASLKPGDIVIFQFPTWNGFEFDRLFVDKLKKKQVKIIILIHDIE------PLR------------------FDSN-Y 111 (333)
T ss_pred HHHhcCCCCCEEEEECCCCchHHHHHHHHHHHHHcCCEEEEEECCcH------HHh------------------cccc-c
Confidence 45667888 888766533221 112211 23699999999532 100 0000 0
Q ss_pred HHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCCCCCCCeEEEEeeccCCCCChH
Q psy15555 226 FYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKIISVAQFRPEKDHP 305 (488)
Q Consensus 226 ~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~ 305 (488)
.....++.+++++|.+++.|+.+++.+.+.+....++.++++..+...... . .....++.++|+|++.....
T Consensus 112 ----~~~~~~~~~~~~aD~iI~~S~~~~~~l~~~g~~~~~i~~~~~~~~~~~~~~-~-~~~~~~~~i~yaG~l~k~~~-- 183 (333)
T PRK09814 112 ----YLMKEEIDMLNLADVLIVHSKKMKDRLVEEGLTTDKIIVQGIFDYLNDIEL-V-KTPSFQKKINFAGNLEKSPF-- 183 (333)
T ss_pred ----hhhHHHHHHHHhCCEEEECCHHHHHHHHHcCCCcCceEecccccccccccc-c-ccccCCceEEEecChhhchH--
Confidence 012345667889999999999999999886443446666655433211111 1 11234568999999983221
Q ss_pred HHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcC-
Q psy15555 306 LQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAM- 384 (488)
Q Consensus 306 ~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s- 384 (488)
++ ... ++++|+++|.|+.. + ...++|+|.|+++.+|+..+|+. |+++...
T Consensus 184 --l~------~~~-----~~~~l~i~G~g~~~------~---------~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~ 234 (333)
T PRK09814 184 --LK------NWS-----QGIKLTVFGPNPED------L---------ENSANISYKGWFDPEELPNELSK-GFGLVWDG 234 (333)
T ss_pred --HH------hcC-----CCCeEEEECCCccc------c---------ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcC
Confidence 11 122 67899999999743 1 23578999999999999999998 6444322
Q ss_pred C----------CCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHHccCHHHHHHHH
Q psy15555 385 W----------NEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILHLSQDTKTRIS 454 (488)
Q Consensus 385 ~----------~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~~~~~~~~~~~ 454 (488)
. .-.+|+++.|+||+|+|||+++.++.. ++++++ ++|+++++.+++++++.++ +++.+++|+
T Consensus 235 ~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~-~~V~~~----~~G~~v~~~~el~~~l~~~---~~~~~~~m~ 306 (333)
T PRK09814 235 DTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAIA-DFIVEN----GLGFVVDSLEELPEIIDNI---TEEEYQEMV 306 (333)
T ss_pred CCCCccchhhhhccchHHHHHHHHCCCCEEECCCccHH-HHHHhC----CceEEeCCHHHHHHHHHhc---CHHHHHHHH
Confidence 1 235688899999999999999988886 999988 9999999999999999884 467789999
Q ss_pred HHHHHHHhhcCHHHHHHH
Q psy15555 455 QNAVSSVDRFSMEEFKNG 472 (488)
Q Consensus 455 ~~a~~~~~~~s~~~~~~~ 472 (488)
+++++.++++....+.++
T Consensus 307 ~n~~~~~~~~~~g~~~~~ 324 (333)
T PRK09814 307 ENVKKISKLLRNGYFTKK 324 (333)
T ss_pred HHHHHHHHHHhcchhHHH
Confidence 999998877666555554
No 88
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.87 E-value=3.5e-20 Score=167.40 Aligned_cols=120 Identities=29% Similarity=0.398 Sum_probs=102.6
Q ss_pred EeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCC-ChHHHHH
Q psy15555 294 SVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNL-PYEDMKK 372 (488)
Q Consensus 294 ~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~-~~~el~~ 372 (488)
++|++.+.||++.+++++..+.++. ++++++++|.+... ....+.+.+.+..++|.+.|.+ +.+++..
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~~-----~~~~~~i~G~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 177 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKERG-----PDLKLVIAGDGPER------EYLEELLAALLLLDRVIFLGGLDPEELLAL 177 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHHhC-----CCeEEEEEeCCCCh------HHHHHHHHhcCCcccEEEeCCCCcHHHHHH
Confidence 9999999999999999999999877 89999999998643 3444445666777899999997 4566666
Q ss_pred HHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceec
Q psy15555 373 EFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLA 429 (488)
Q Consensus 373 ~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~ 429 (488)
+++.||+++.||..|++|.+++|||++|+|+|+++.++.. |++.++ ++|+++
T Consensus 178 ~~~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~-e~i~~~----~~g~~~ 229 (229)
T cd01635 178 LLAAADVFVLPSLREGFGLVVLEAMACGLPVIATDVGGPP-EIVEDG----LTGLLV 229 (229)
T ss_pred HhhcCCEEEecccccCcChHHHHHHhCCCCEEEcCCCCcc-eEEECC----CceEEC
Confidence 7777999999999999999999999999999999999886 878777 788764
No 89
>KOG2941|consensus
Probab=99.84 E-value=1.2e-17 Score=147.85 Aligned_cols=355 Identities=16% Similarity=0.215 Sum_probs=231.4
Q ss_pred CCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeeccC---chhH
Q psy15555 62 CNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEASL---YPYF 138 (488)
Q Consensus 62 ~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~ 138 (488)
++..|-..|..++. ..|++.+.+++++-+..+ .+.+++.+. ++ +.+...+......... +..+
T Consensus 20 LGDvGRSPRMqYHA-~Sla~~gf~VdliGy~~s--~p~e~l~~h----------pr-I~ih~m~~l~~~~~~p~~~~l~l 85 (444)
T KOG2941|consen 20 LGDVGRSPRMQYHA-LSLAKLGFQVDLIGYVES--IPLEELLNH----------PR-IRIHGMPNLPFLQGGPRVLFLPL 85 (444)
T ss_pred ecccCCChHHHHHH-HHHHHcCCeEEEEEecCC--CChHHHhcC----------Cc-eEEEeCCCCcccCCCchhhhhHH
Confidence 44455566776665 678888777777777766 233333331 22 6665555544333222 2233
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcEEEecCC--ccchhhhh---hhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccc
Q psy15555 139 TLLGQSIGSMILGVEALLSFQPDIYIDTMG--YAFTYPLF---SYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQR 213 (488)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~~~~pDiii~~~~--~~~~~~~~---~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~ 213 (488)
+.+.+++.. .+.++....||++..+.+ .|.. .++ ...++.+.++..|.-..+ -
T Consensus 86 Kvf~Qfl~L---l~aL~~~~~~~~ilvQNPP~iPtl-iv~~~~~~l~~~KfiIDWHNy~Ys---------l--------- 143 (444)
T KOG2941|consen 86 KVFWQFLSL---LWALFVLRPPDIILVQNPPSIPTL-IVCVLYSILTGAKFIIDWHNYGYS---------L--------- 143 (444)
T ss_pred HHHHHHHHH---HHHHHhccCCcEEEEeCCCCCchH-HHHHHHHHHhcceEEEEehhhHHH---------H---------
Confidence 444444433 333444678998876542 2222 222 235789999977743211 0
Q ss_pred cccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcC--C---CCchh----hhccCC-
Q psy15555 214 VANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYP--P---CDTED----LKKITH- 283 (488)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~--~---~d~~~----~~~~~~- 283 (488)
..++........-+..++.++++.+.||.-+|+|+.|++.+.+.++.. +..+++. + .+.+. |.+...
T Consensus 144 --~l~~~~g~~h~lV~l~~~~E~~fgk~a~~nLcVT~AMr~dL~qnWgi~-ra~v~YDrPps~~~~l~~~H~lf~~l~~d 220 (444)
T KOG2941|consen 144 --QLKLKLGFQHPLVRLVRWLEKYFGKLADYNLCVTKAMREDLIQNWGIN-RAKVLYDRPPSKPTPLDEQHELFMKLAGD 220 (444)
T ss_pred --HHHhhcCCCCchHHHHHHHHHHhhcccccchhhHHHHHHHHHHhcCCc-eeEEEecCCCCCCCchhHHHHHHhhhccc
Confidence 000011111223455667788899999999999999999999999953 3444442 2 11111 111100
Q ss_pred ---------C--------------------CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhh--hccCceEEEEEe
Q psy15555 284 ---------S--------------------KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISE--ELWDNLKLIFIG 332 (488)
Q Consensus 284 ---------~--------------------~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~--~~~~~~~l~ivG 332 (488)
+ ..+...+++.....++.+++..+++|+....++..+ -..|++..+|.|
T Consensus 221 ~~~f~ar~~q~~~~~~taf~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITG 300 (444)
T KOG2941|consen 221 HSPFRAREPQDKALERTAFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITG 300 (444)
T ss_pred cchhhhcccccchhhhhhHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcC
Confidence 0 123344566666788999999999999855332111 123889999999
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEE--EcC-CCCcCCccHHHHHHcCCcEEEeCCC
Q psy15555 333 STRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGL--HAM-WNEHFGIGIVECMAAGLIMIAHKSG 409 (488)
Q Consensus 333 ~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v--~~s-~~e~~g~~~lEa~a~G~PvI~~~~~ 409 (488)
.||.. +...+.+++.++...-....+...++.+.+++.||++| ++| ..=..|+++++...||+||++-+..
T Consensus 301 KGPlk------E~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fk 374 (444)
T KOG2941|consen 301 KGPLK------EKYSQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFK 374 (444)
T ss_pred CCchh------HHHHHHHHHhcccceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecch
Confidence 99976 77788888888876556678888899999999999655 444 3345789999999999999999998
Q ss_pred CCccceeccCCCccccceecCCHHHHHHHHHHHHc---cCHHHHHHHHHHHHHHHhhcCHH
Q psy15555 410 GPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILH---LSQDTKTRISQNAVSSVDRFSME 467 (488)
Q Consensus 410 ~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~---~~~~~~~~~~~~a~~~~~~~s~~ 467 (488)
... |+++++ +||++++|.+++++.+..++. .+.+...++..++++. +...|+
T Consensus 375 cl~-ELVkh~----eNGlvF~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~-~e~RW~ 429 (444)
T KOG2941|consen 375 CLD-ELVKHG----ENGLVFEDSEELAEQLQMLFKNFPDNADELNQLKKNLREE-QELRWD 429 (444)
T ss_pred hHH-HHHhcC----CCceEeccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH-HhhhHH
Confidence 885 999999 999999999999999999987 2567888888888765 334454
No 90
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.84 E-value=4.1e-19 Score=172.48 Aligned_cols=268 Identities=13% Similarity=0.064 Sum_probs=176.3
Q ss_pred HHHHHHHhhhcCCcEEEecCCccchhh--hhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhH
Q psy15555 148 MILGVEALLSFQPDIYIDTMGYAFTYP--LFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKL 225 (488)
Q Consensus 148 ~~~~~~~l~~~~pDiii~~~~~~~~~~--~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (488)
.....+.+++.+||+|+.+..+...+. .+....++|++...+.-. +++ .. ... .
T Consensus 77 ~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~~~g~~-s~~-------------------~~-~~~---~ 132 (363)
T cd03786 77 LIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGIPVAHVEAGLR-SFD-------------------RG-MPD---E 132 (363)
T ss_pred HHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEecccc-cCC-------------------CC-CCc---h
Confidence 345666778889999987754443332 233356889775333110 000 00 000 0
Q ss_pred HHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCC-CchhhhccC---------CCCCCCCeEEEEe
Q psy15555 226 FYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPC-DTEDLKKIT---------HSKTDGPVKIISV 295 (488)
Q Consensus 226 ~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~-d~~~~~~~~---------~~~~~~~~~i~~~ 295 (488)
. ....+.+.+|.+++.|+..++++.+.+..++++.+++|++ |...+.... ....+++.++++.
T Consensus 133 -~------~r~~~~~~ad~~~~~s~~~~~~l~~~G~~~~kI~vign~v~d~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~ 205 (363)
T cd03786 133 -E------NRHAIDKLSDLHFAPTEEARRNLLQEGEPPERIFVVGNTMIDALLRLLELAKKELILELLGLLPKKYILVTL 205 (363)
T ss_pred -H------HHHHHHHHhhhccCCCHHHHHHHHHcCCCcccEEEECchHHHHHHHHHHhhccchhhhhcccCCCCEEEEEe
Confidence 0 0111335679999999999999998766566899999984 543222111 0112345677788
Q ss_pred eccCC---CCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCC-CCcEEEecCCChHHHH
Q psy15555 296 AQFRP---EKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSL-ENNVEFKVNLPYEDMK 371 (488)
Q Consensus 296 g~~~~---~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l-~~~v~~~g~~~~~el~ 371 (488)
|+... .|+++.+++|++.+.+ .++.+++.|.++. .+++++.++++++ .++|.+.+..+.+++.
T Consensus 206 ~r~~~~~~~k~~~~l~~al~~l~~-------~~~~vi~~~~~~~------~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 272 (363)
T cd03786 206 HRVENVDDGEQLEEILEALAELAE-------EDVPVVFPNHPRT------RPRIREAGLEFLGHHPNVLLISPLGYLYFL 272 (363)
T ss_pred CCccccCChHHHHHHHHHHHHHHh-------cCCEEEEECCCCh------HHHHHHHHHhhccCCCCEEEECCcCHHHHH
Confidence 88764 6899999999998853 2356666555432 2677777777765 5789999988889999
Q ss_pred HHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC-CHHHHHHHHHHHHccCHHHH
Q psy15555 372 KEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKLILHLSQDTK 450 (488)
Q Consensus 372 ~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~~~~~~~ 450 (488)
.+|+.||++|.+|. | ...|||++|+|+|+++..+...+.++.+ .+..+. |++++++++.++++ +++.+
T Consensus 273 ~l~~~ad~~v~~Sg----g-i~~Ea~~~g~PvI~~~~~~~~~~~~~~g-----~~~~~~~~~~~i~~~i~~ll~-~~~~~ 341 (363)
T cd03786 273 LLLKNADLVLTDSG----G-IQEEASFLGVPVLNLRDRTERPETVESG-----TNVLVGTDPEAILAAIEKLLS-DEFAY 341 (363)
T ss_pred HHHHcCcEEEEcCc----c-HHhhhhhcCCCEEeeCCCCccchhhhee-----eEEecCCCHHHHHHHHHHHhc-Cchhh
Confidence 99999999999884 3 4789999999999987543333555543 344444 79999999999999 88777
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH
Q psy15555 451 TRISQNAVSSVDRFSMEEFKNGFLTF 476 (488)
Q Consensus 451 ~~~~~~a~~~~~~~s~~~~~~~~~~~ 476 (488)
.+|. ...|.-...++++.++
T Consensus 342 ~~~~------~~~~~~~~a~~~I~~~ 361 (363)
T cd03786 342 SLMS------INPYGDGNASERIVEI 361 (363)
T ss_pred hcCC------CCCCCCCHHHHHHHHH
Confidence 7764 2344444445555444
No 91
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.81 E-value=1.5e-17 Score=171.89 Aligned_cols=289 Identities=10% Similarity=0.150 Sum_probs=202.9
Q ss_pred HHhhhcCCc-EEEecCCccchhhhh-h-hhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHH
Q psy15555 153 EALLSFQPD-IYIDTMGYAFTYPLF-S-YIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYK 229 (488)
Q Consensus 153 ~~l~~~~pD-iii~~~~~~~~~~~~-~-~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (488)
++.+..+|| +|..+..+..++|.. + .....++.+++|.|+.+.++...+..+. .
T Consensus 224 ~i~~~~~~gD~VWVHDYHL~LlP~~LR~~~p~~~IGfFlHiPFPs~Eifr~LP~r~-----------------------e 280 (934)
T PLN03064 224 VVNEHYEEGDVVWCHDYHLMFLPKCLKEYNSNMKVGWFLHTPFPSSEIHRTLPSRS-----------------------E 280 (934)
T ss_pred HHHHhcCCCCEEEEecchhhHHHHHHHHhCCCCcEEEEecCCCCChHHHhhCCcHH-----------------------H
Confidence 334555665 665565555555533 2 2456789999999998776654332211 1
Q ss_pred HHHHHHHHHhcccCEEEEcChhHHHHHHHHh----cc------------CCceEEEcCCCCchhhhccCCC---------
Q psy15555 230 VFALLYSHVGKYSDIIMVNSSWTEEHVIQLW----NC------------QLKTYKLYPPCDTEDLKKITHS--------- 284 (488)
Q Consensus 230 ~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~----~~------------~~k~~vi~~~~d~~~~~~~~~~--------- 284 (488)
++ ..+-.+|.|-+++...++.|.+.. +. ..++.++|-|+|.+.+......
T Consensus 281 lL-----~glL~aDlIGFqT~~y~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~ 355 (934)
T PLN03064 281 LL-----RSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKE 355 (934)
T ss_pred HH-----HHHhcCCeEEeCCHHHHHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHH
Confidence 11 123458999999999999987622 11 1146677889999888654211
Q ss_pred ---CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceE--EEEE--ecCCCCCcHHH---HHHHHHHHHhcC
Q psy15555 285 ---KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLK--LIFI--GSTRNEEDEVC---VKDMQDLCKHLS 354 (488)
Q Consensus 285 ---~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~--l~iv--G~~~~~~~~~~---~~~l~~~~~~~~ 354 (488)
...++.+|+.++|++..||+..-++||.++.+++ |+++ ++++ .-....+.++| ..++.+++.+.+
T Consensus 356 lr~~~~g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~-----Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN 430 (934)
T PLN03064 356 LKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEEN-----PEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRIN 430 (934)
T ss_pred HHHHhCCceEEEEeeccccccCHHHHHHHHHHHHHhC-----ccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 1236789999999999999999999999998887 6643 4444 21111111132 233444333322
Q ss_pred ----CC--CcEEEe-cCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCC----cEEEeCCCCCccceeccCCCcc
Q psy15555 355 ----LE--NNVEFK-VNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGL----IMIAHKSGGPKMDIVIEDPETC 423 (488)
Q Consensus 355 ----l~--~~v~~~-g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~----PvI~~~~~~~~~eiv~~~~~~~ 423 (488)
-. ..|+++ ..++.+|+..+|+.||+++.+|..||++++..||++|+. ++|.+...|.. +.+.
T Consensus 431 ~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfaGaa-~~L~------ 503 (934)
T PLN03064 431 GRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAGAA-QSLG------ 503 (934)
T ss_pred hhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEeCCCchH-HHhC------
Confidence 11 124444 457999999999999999999999999999999999944 44448888776 4453
Q ss_pred ccceecC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhh
Q psy15555 424 RNGFLAC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLF 481 (488)
Q Consensus 424 ~~g~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~ 481 (488)
..+++++ |.++++++|.+++.|+++++++..++.++.+..+++..+++.+++-++...
T Consensus 504 ~~AllVNP~D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 504 AGAILVNPWNITEVAASIAQALNMPEEEREKRHRHNFMHVTTHTAQEWAETFVSELNDTV 563 (934)
T ss_pred CceEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHH
Confidence 2477776 999999999999998999999999999999999999999999988887764
No 92
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.81 E-value=3.4e-17 Score=157.94 Aligned_cols=225 Identities=24% Similarity=0.367 Sum_probs=184.8
Q ss_pred ccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccC-CCCCCC-CeEEEEeeccCCCCChHHHHHHHHHhHHhh
Q psy15555 241 YSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKIT-HSKTDG-PVKIISVAQFRPEKDHPLQLRAMYQLRQII 318 (488)
Q Consensus 241 ~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~-~~~~~~-~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~ 318 (488)
..+.++..+......+...+. ..++.+++++++...+.... ...... ...++++|++.+.|+++.+++++..+....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~ 228 (381)
T COG0438 150 LADRVIAVSPALKELLEALGV-PNKIVVIPNGIDTEKFAPARIGLLPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKRG 228 (381)
T ss_pred cccEEEECCHHHHHHHHHhCC-CCCceEecCCcCHHHcCccccCCCcccCceEEEEeeccChhcCHHHHHHHHHHhhhhc
Confidence 478899999988676666544 33688999999988776521 111122 379999999999999999999999998876
Q ss_pred hhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHH
Q psy15555 319 SEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMA 398 (488)
Q Consensus 319 ~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a 398 (488)
+++.+.++|.++.. .+.+.+..++.+..+++.+.|.++.+++..+++.||+++.||..|++|.+++|||+
T Consensus 229 -----~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a 298 (381)
T COG0438 229 -----PDIKLVIVGDGPER-----REELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMA 298 (381)
T ss_pred -----CCeEEEEEcCCCcc-----HHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHh
Confidence 55899999998642 24566677777777889999999878899999999999999988999999999999
Q ss_pred cCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHH
Q psy15555 399 AGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSV-DRFSMEEFKNGFLT 475 (488)
Q Consensus 399 ~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~ 475 (488)
+|+|||+++.++.. +++.++ .+|+++. +.+++++++..+++ +++.++.+++.+++.+ +.|+|+...+++.+
T Consensus 299 ~g~pvi~~~~~~~~-e~~~~~----~~g~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (381)
T COG0438 299 AGTPVIASDVGGIP-EVVEDG----ETGLLVPPGDVEELADALEQLLE-DPELREELGEAARERVEEEFSWERIAEQLLE 372 (381)
T ss_pred cCCcEEECCCCChH-HHhcCC----CceEecCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999999776 888776 4577655 58999999999999 7788888888666666 89999999999999
Q ss_pred HHHHhhh
Q psy15555 476 FTQPLFK 482 (488)
Q Consensus 476 ~~~~~~~ 482 (488)
++.....
T Consensus 373 ~~~~~~~ 379 (381)
T COG0438 373 LYEELLA 379 (381)
T ss_pred HHHHHHh
Confidence 9887654
No 93
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.80 E-value=4.5e-18 Score=168.58 Aligned_cols=216 Identities=13% Similarity=0.137 Sum_probs=176.3
Q ss_pred hcccCEEEEcChhHHHHHHHHhccC---CceEEEcCCCCchhhhccCCCCCCCCeEEEEee--ccCCCCChHHHHHHHHH
Q psy15555 239 GKYSDIIMVNSSWTEEHVIQLWNCQ---LKTYKLYPPCDTEDLKKITHSKTDGPVKIISVA--QFRPEKDHPLQLRAMYQ 313 (488)
Q Consensus 239 ~~~~d~ii~~s~~~~~~~~~~~~~~---~k~~vi~~~~d~~~~~~~~~~~~~~~~~i~~~g--~~~~~k~~~~ll~a~~~ 313 (488)
+..+|.+|+.|+..++.+.+.++.. .++..||++ +.... .. .....+..+++++ |+ ++|.++.+++|+.+
T Consensus 270 ~~~~d~iIv~T~~q~~~l~~~~~~~~~~~~v~~Ip~~-~~~~~-~~--~s~r~~~~~I~v~idrL-~ek~~~~~I~av~~ 344 (519)
T TIGR03713 270 LSRADLIIVDREDIERLLEENYRENYVEFDISRITPF-DTRLR-LG--QSQQLYETEIGFWIDGL-SDEELQQILQQLLQ 344 (519)
T ss_pred hhhcCeEEEcCHHHHHHHHHHhhhcccCCcceeeCcc-ceEEe-cC--hhhcccceEEEEEcCCC-ChHHHHHHHHHHHH
Confidence 4567999999988777777665522 245566654 33222 11 1112344677778 99 99999999999999
Q ss_pred hHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCC-----------------------------CcEEEecC
Q psy15555 314 LRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLE-----------------------------NNVEFKVN 364 (488)
Q Consensus 314 l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~-----------------------------~~v~~~g~ 364 (488)
+.++. |+++|.+.|.+... +..+.+++.++++++. +.|.+.|.
T Consensus 345 ~~~~~-----p~~~L~~~gy~~~~---~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~gy 416 (519)
T TIGR03713 345 YILKN-----PDYELKILTYNNDN---DITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQTDEEQKEKERIAFTTL 416 (519)
T ss_pred HHhhC-----CCeEEEEEEecCch---hHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccchhhcccccEEEEEec
Confidence 99988 99999999988532 3456676776666555 68999999
Q ss_pred CChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHHc
Q psy15555 365 LPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILH 444 (488)
Q Consensus 365 ~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~ 444 (488)
.+..++.+.|..+.++|.+|..|+++ +.+||++.|+|+| ..|+. +++.++ .||++++|.++|++++..++.
T Consensus 417 ~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqI---nyg~~-~~V~d~----~NG~li~d~~~l~~al~~~L~ 487 (519)
T TIGR03713 417 TNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQI---NKVET-DYVEHN----KNGYIIDDISELLKALDYYLD 487 (519)
T ss_pred CCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCee---ecCCc-eeeEcC----CCcEEeCCHHHHHHHHHHHHh
Confidence 87679999999999999999999999 9999999999999 44455 999999 999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q psy15555 445 LSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFT 477 (488)
Q Consensus 445 ~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~ 477 (488)
+++...++...+.+.+++||.+.+.++|.+++
T Consensus 488 -~~~~wn~~~~~sy~~~~~yS~~~i~~kW~~~~ 519 (519)
T TIGR03713 488 -NLKNWNYSLAYSIKLIDDYSSENIIERLNELI 519 (519)
T ss_pred -CHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhC
Confidence 99999999999999999999999999998753
No 94
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.76 E-value=2.6e-16 Score=152.43 Aligned_cols=266 Identities=15% Similarity=0.054 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhh--hhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccc
Q psy15555 138 FTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPL--FSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVA 215 (488)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~--~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~ 215 (488)
+......+.....+.+.+++.+||+++.+....+.+.+ .....++|++.++ .|.. |
T Consensus 68 l~~~~~~~~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i-~P~~-w-------------------- 125 (385)
T TIGR00215 68 LGRLGRLLKIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYI-SPQV-W-------------------- 125 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEe-CCcH-h--------------------
Confidence 33444455556678889999999999877643323223 3335688988655 2321 1
Q ss_pred cCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhh--ccC------CCCCC
Q psy15555 216 NNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLK--KIT------HSKTD 287 (488)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~--~~~------~~~~~ 287 (488)
...... .+.+.+.+|.+++.++..++.+.+. +. +..+++||+...... +.. -..++
T Consensus 126 --aw~~~~-----------~r~l~~~~d~v~~~~~~e~~~~~~~-g~--~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~ 189 (385)
T TIGR00215 126 --AWRKWR-----------AKKIEKATDFLLAILPFEKAFYQKK-NV--PCRFVGHPLLDAIPLYKPDRKSAREKLGIDH 189 (385)
T ss_pred --hcCcch-----------HHHHHHHHhHhhccCCCcHHHHHhc-CC--CEEEECCchhhhccccCCCHHHHHHHcCCCC
Confidence 111110 1123456899999999999888763 32 467788886322111 100 11233
Q ss_pred CCeEEEEe-e-ccCC-CCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC
Q psy15555 288 GPVKIISV-A-QFRP-EKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN 364 (488)
Q Consensus 288 ~~~~i~~~-g-~~~~-~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 364 (488)
++++++.. | |... .|....+++|++.+.+.. |++++++++.+. ...+.+++..+.++....+.+.+
T Consensus 190 ~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~-----p~~~~vi~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~- 258 (385)
T TIGR00215 190 NGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQE-----PDLRRVLPVVNF-----KRRLQFEQIKAEYGPDLQLHLID- 258 (385)
T ss_pred CCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhC-----CCeEEEEEeCCc-----hhHHHHHHHHHHhCCCCcEEEEC-
Confidence 45555544 3 4443 578889999999998877 788887765442 11245555555655544565543
Q ss_pred CChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCcc----------------ceeccCCCccccce-
Q psy15555 365 LPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKM----------------DIVIEDPETCRNGF- 427 (488)
Q Consensus 365 ~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~----------------eiv~~~~~~~~~g~- 427 (488)
+++..+|+.||++|.+| |.+.+|+|++|+|+|......+.. .++.+. +..-
T Consensus 259 ---~~~~~~l~aADl~V~~S-----Gt~tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~----~~~pe 326 (385)
T TIGR00215 259 ---GDARKAMFAADAALLAS-----GTAALEAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANR----LLVPE 326 (385)
T ss_pred ---chHHHHHHhCCEEeecC-----CHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCC----ccchh
Confidence 25668999999999998 777789999999999973221110 112221 1111
Q ss_pred ec--C-CHHHHHHHHHHHHccCH----HHHHHHHHHHHHHHhhcC
Q psy15555 428 LA--C-DEVEYAQTIKLILHLSQ----DTKTRISQNAVSSVDRFS 465 (488)
Q Consensus 428 ~~--~-~~~~l~~~i~~ll~~~~----~~~~~~~~~a~~~~~~~s 465 (488)
+. + +++.+++.+.+++. |+ +.++++.+.-.+..+...
T Consensus 327 l~q~~~~~~~l~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~l~ 370 (385)
T TIGR00215 327 LLQEECTPHPLAIALLLLLE-NGLKAYKEMHRERQFFEELRQRIY 370 (385)
T ss_pred hcCCCCCHHHHHHHHHHHhc-CCcccHHHHHHHHHHHHHHHHHhc
Confidence 11 1 78999999999999 88 888888777665544443
No 95
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=3.4e-15 Score=140.63 Aligned_cols=326 Identities=11% Similarity=0.061 Sum_probs=203.1
Q ss_pred CCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeeccCchhHHHHHH
Q psy15555 64 AGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEASLYPYFTLLGQ 143 (488)
Q Consensus 64 ~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 143 (488)
.+||--..+..++++|.+++++ ++.+..+. ........+. .. +.+..++.........+..+.....
T Consensus 9 GTGGHv~pAlAl~~~l~~~g~~-~v~~~~~~-~~~e~~l~~~----------~~-~~~~~I~~~~~~~~~~~~~~~~~~~ 75 (357)
T COG0707 9 GTGGHVFPALALAEELAKRGWE-QVIVLGTG-DGLEAFLVKQ----------YG-IEFELIPSGGLRRKGSLKLLKAPFK 75 (357)
T ss_pred CCccchhHHHHHHHHHHhhCcc-EEEEeccc-ccceeeeccc----------cC-ceEEEEecccccccCcHHHHHHHHH
Confidence 3445557788899999999766 55554333 2222111111 12 5566666665655555555555556
Q ss_pred HHHHHHHHHHHhhhcCCcEEEecCCccchhhhh-hhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchh
Q psy15555 144 SIGSMILGVEALLSFQPDIYIDTMGYAFTYPLF-SYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTS 222 (488)
Q Consensus 144 ~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~-~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (488)
.+......++.+++++||+|+.+.+++...+.. ++..++|++.+-.. ...+.
T Consensus 76 ~~~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn---------------------------~~~G~ 128 (357)
T COG0707 76 LLKGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQN---------------------------AVPGL 128 (357)
T ss_pred HHHHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecC---------------------------CCcch
Confidence 666778888999999999999998887765533 33557777663321 11221
Q ss_pred hhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhh-ccCC---CCCCCCeEEEEeecc
Q psy15555 223 FKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLK-KITH---SKTDGPVKIISVAQF 298 (488)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~-~~~~---~~~~~~~~i~~~g~~ 298 (488)
..+ ...+.++.|.+.-+. ...+..++++.++.+|+..+... +... ....++++++.+|..
T Consensus 129 ank-----------~~~~~a~~V~~~f~~-----~~~~~~~~~~~~tG~Pvr~~~~~~~~~~~~~~~~~~~~~ilV~GGS 192 (357)
T COG0707 129 ANK-----------ILSKFAKKVASAFPK-----LEAGVKPENVVVTGIPVRPEFEELPAAEVRKDGRLDKKTILVTGGS 192 (357)
T ss_pred hHH-----------HhHHhhceeeecccc-----ccccCCCCceEEecCcccHHhhccchhhhhhhccCCCcEEEEECCc
Confidence 111 122345666655443 23344445789999999877664 1111 111256677666655
Q ss_pred CCCCChHHHHHHHHHhHHhhhhhccC-ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhC
Q psy15555 299 RPEKDHPLQLRAMYQLRQIISEELWD-NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEG 377 (488)
Q Consensus 299 ~~~k~~~~ll~a~~~l~~~~~~~~~~-~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~a 377 (488)
..-+. +-+++..+.... . +++++...+.. . .+++++...+++. +...++. ++|..+|+.|
T Consensus 193 ~Ga~~---ln~~v~~~~~~l-----~~~~~v~~~~G~~-----~-~~~~~~~~~~~~~---~~v~~f~--~dm~~~~~~A 253 (357)
T COG0707 193 QGAKA---LNDLVPEALAKL-----ANRIQVIHQTGKN-----D-LEELKSAYNELGV---VRVLPFI--DDMAALLAAA 253 (357)
T ss_pred chhHH---HHHHHHHHHHHh-----hhCeEEEEEcCcc-----h-HHHHHHHHhhcCc---EEEeeHH--hhHHHHHHhc
Confidence 43333 334444443333 2 35555544331 2 3666666666654 8888998 8999999999
Q ss_pred cEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCc---c----ceeccCCCccccceecC----CHHHHHHHHHHHHccC
Q psy15555 378 LIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPK---M----DIVIEDPETCRNGFLAC----DEVEYAQTIKLILHLS 446 (488)
Q Consensus 378 d~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~---~----eiv~~~~~~~~~g~~~~----~~~~l~~~i~~ll~~~ 446 (488)
|++|.- .++.++.|.+++|+|+|.-+.+.-. + ..+++. +.|.+++ +++++.+.|.++++ +
T Consensus 254 DLvIsR----aGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~----gaa~~i~~~~lt~~~l~~~i~~l~~-~ 324 (357)
T COG0707 254 DLVISR----AGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA----GAALVIRQSELTPEKLAELILRLLS-N 324 (357)
T ss_pred cEEEeC----CcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC----CCEEEeccccCCHHHHHHHHHHHhc-C
Confidence 998864 4578999999999999998774331 0 233333 5677765 47799999999999 9
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHH
Q psy15555 447 QDTKTRISQNAVSSVDRFSMEEFKNGF 473 (488)
Q Consensus 447 ~~~~~~~~~~a~~~~~~~s~~~~~~~~ 473 (488)
++..++|.+++++....-+.+.+++..
T Consensus 325 ~~~l~~m~~~a~~~~~p~aa~~i~~~~ 351 (357)
T COG0707 325 PEKLKAMAENAKKLGKPDAAERIADLL 351 (357)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 999999999997665443344444433
No 96
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.69 E-value=7e-17 Score=133.02 Aligned_cols=130 Identities=31% Similarity=0.433 Sum_probs=95.7
Q ss_pred CeEEEEeeccCCCCChHHHHH-HHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCCh
Q psy15555 289 PVKIISVAQFRPEKDHPLQLR-AMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPY 367 (488)
Q Consensus 289 ~~~i~~~g~~~~~k~~~~ll~-a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 367 (488)
-++++++|+..+.|+++.+++ ++.++.++. |+++|+|+|.++ ++++++ ..++|+++|++
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~-----p~~~l~i~G~~~--------~~l~~~-----~~~~v~~~g~~-- 61 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKH-----PDIELIIIGNGP--------DELKRL-----RRPNVRFHGFV-- 61 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHS-----TTEEEEEECESS---------HHCCH-----HHCTEEEE-S---
T ss_pred cccccccccccccccccchhhhHHHHHHHHC-----cCEEEEEEeCCH--------HHHHHh-----cCCCEEEcCCH--
Confidence 468999999999999999999 999999988 899999999987 234443 13589999999
Q ss_pred HHHHHHHHhCcEEEEcCC-CCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCcccccee-cCCHHHHHHHHHHHHc
Q psy15555 368 EDMKKEFSEGLIGLHAMW-NEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFL-ACDEVEYAQTIKLILH 444 (488)
Q Consensus 368 ~el~~~~~~ad~~v~~s~-~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~-~~~~~~l~~~i~~ll~ 444 (488)
+|+.++++.||+++.|+. .++++.+++|||++|+|||+++. +.. ++.... +.|.. .+|+++++++|.++++
T Consensus 62 ~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-~~~-~~~~~~----~~~~~~~~~~~~l~~~i~~l~~ 134 (135)
T PF13692_consen 62 EELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-GAE-GIVEED----GCGVLVANDPEELAEAIERLLN 134 (135)
T ss_dssp HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-HCH-CHS-------SEEEE-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-chh-hheeec----CCeEEECCCHHHHHHHHHHHhc
Confidence 799999999999999984 67889999999999999999998 443 555433 34544 4599999999999986
No 97
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.65 E-value=4.2e-14 Score=137.07 Aligned_cols=355 Identities=15% Similarity=0.127 Sum_probs=202.1
Q ss_pred CceehHHHHHHHHHHhCCCeeEE---EEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeeccCchhHHHHHH
Q psy15555 67 GGERVLWTAVLALHQKYPDYKIY---IYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEASLYPYFTLLGQ 143 (488)
Q Consensus 67 G~e~~~~~l~~~L~~~~~~~~v~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 143 (488)
|+...+..++++|.++.++++|. .+....+. ...... ..+ ++..++...+........+..+..
T Consensus 8 ged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~-e~~~ip----~~g--------~~~~~~sgg~~~~~~~~~~~~~~~ 74 (396)
T TIGR03492 8 GEDLIAARIAKALLQLSPDLNLEALPLVGEGRAY-QNLGIP----IIG--------PTKELPSGGFSYQSLRGLLRDLRA 74 (396)
T ss_pred hHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHH-hhCCCc----eeC--------CCCCCCCCCccCCCHHHHHHHHHh
Confidence 57799999999999977788877 44433221 110000 000 122333334433444455555555
Q ss_pred -HHHHHHHHHHHhhhc--CCcEEEecCCccchhhhhhhhCCCeeEE-EEeCCccchHHHHHHHhhhhcccCccccccCcc
Q psy15555 144 -SIGSMILGVEALLSF--QPDIYIDTMGYAFTYPLFSYIGGSKVAC-YIHYPTITKEMLTRVARRVITHNNSQRVANNPI 219 (488)
Q Consensus 144 -~~~~~~~~~~~l~~~--~pDiii~~~~~~~~~~~~~~~~~~~~v~-~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 219 (488)
.+...+..++.++++ +||+|+.+.++.. -++.+..++|.++ -.|.....|. ..........
T Consensus 75 gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v~--~~aA~~~~~p~~~~~~~esn~~~~-------------~~~~~~~~~~ 139 (396)
T TIGR03492 75 GLVGLTLGQWRALRKWAKKGDLIVAVGDIVP--LLFAWLSGKPYAFVGTAKSDYYWE-------------SGPRRSPSDE 139 (396)
T ss_pred hHHHHHHHHHHHHHHHhhcCCEEEEECcHHH--HHHHHHcCCCceEEEeeccceeec-------------CCCCCccchh
Confidence 666777788889999 9999998887662 2334577888766 3454332210 0000000000
Q ss_pred chhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCCCCCCCeEEEEeeccC
Q psy15555 220 LTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKIISVAQFR 299 (488)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~~~~~~~~i~~~g~~~ 299 (488)
...+....+..| ...+...+.||.+.+..+..++.+.+. +. ++.+++||+-............++.++++..+...
T Consensus 140 ~~~~~G~~~~p~-e~n~l~~~~a~~v~~~~~~t~~~l~~~-g~--k~~~vGnPv~d~l~~~~~~~l~~~~~~lllLpGSR 215 (396)
T TIGR03492 140 YHRLEGSLYLPW-ERWLMRSRRCLAVFVRDRLTARDLRRQ-GV--RASYLGNPMMDGLEPPERKPLLTGRFRIALLPGSR 215 (396)
T ss_pred hhccCCCccCHH-HHHHhhchhhCEEeCCCHHHHHHHHHC-CC--eEEEeCcCHHhcCccccccccCCCCCEEEEECCCC
Confidence 000000011111 112334478999999999999988873 32 68999999532222111112223334444444333
Q ss_pred -C--CCChHHHHHHHHHhHHhhhhhccCceEEEEEe-cCCCCCcHHHHHHHHHHHHhcCCC--------------CcEEE
Q psy15555 300 -P--EKDHPLQLRAMYQLRQIISEELWDNLKLIFIG-STRNEEDEVCVKDMQDLCKHLSLE--------------NNVEF 361 (488)
Q Consensus 300 -~--~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG-~~~~~~~~~~~~~l~~~~~~~~l~--------------~~v~~ 361 (488)
. ..+...+++++..+.++ +++.+++.- ...+ .+++++..++.++. +++.+
T Consensus 216 ~ae~~~~lp~~l~al~~L~~~------~~~~~v~~~~~~~~------~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v 283 (396)
T TIGR03492 216 PPEAYRNLKLLLRALEALPDS------QPFVFLAAIVPSLS------LEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEV 283 (396)
T ss_pred HHHHHccHHHHHHHHHHHhhC------CCeEEEEEeCCCCC------HHHHHHHHHhcCceecCCccccchhhccCceEE
Confidence 2 35667889999888643 466666543 2221 25566666554543 23566
Q ss_pred ecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCcc--ceeccC-CCccccceecC-CHHHHHH
Q psy15555 362 KVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKM--DIVIED-PETCRNGFLAC-DEVEYAQ 437 (488)
Q Consensus 362 ~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~--eiv~~~-~~~~~~g~~~~-~~~~l~~ 437 (488)
..+. +++..+|+.||++|..| |.+..|++++|+|+|..+..+... .+.+.. ........+.+ +++.+++
T Consensus 284 ~~~~--~~~~~~l~~ADlvI~rS-----Gt~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~~~~l~~ 356 (396)
T TIGR03492 284 LLGR--GAFAEILHWADLGIAMA-----GTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKNPEQAAQ 356 (396)
T ss_pred Eech--HhHHHHHHhCCEEEECc-----CHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCCHHHHHH
Confidence 6655 78999999999999876 556699999999999987543310 111110 00002223334 7899999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHH-hhcCHHHHHHHH
Q psy15555 438 TIKLILHLSQDTKTRISQNAVSSV-DRFSMEEFKNGF 473 (488)
Q Consensus 438 ~i~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~ 473 (488)
++.++++ |++.+++|.+++++.. +....+++++.+
T Consensus 357 ~l~~ll~-d~~~~~~~~~~~~~~lg~~~a~~~ia~~i 392 (396)
T TIGR03492 357 VVRQLLA-DPELLERCRRNGQERMGPPGASARIAESI 392 (396)
T ss_pred HHHHHHc-CHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 9999999 9999888886555444 444444444433
No 98
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.61 E-value=6.1e-13 Score=130.16 Aligned_cols=290 Identities=13% Similarity=0.155 Sum_probs=170.1
Q ss_pred HHhhhcCCc-EEEecCCccchhhhh-h-hhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHH
Q psy15555 153 EALLSFQPD-IYIDTMGYAFTYPLF-S-YIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYK 229 (488)
Q Consensus 153 ~~l~~~~pD-iii~~~~~~~~~~~~-~-~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (488)
++.+..+|| +|..+.....++|.. + .....++.+++|.|+...++...++. . ..
T Consensus 134 ~i~~~~~~~D~VWVhDYhL~llP~~LR~~~~~~~IgfFlHiPFPs~e~fr~lP~-------------------r----~e 190 (474)
T PF00982_consen 134 AIAEVYRPGDLVWVHDYHLMLLPQMLRERGPDARIGFFLHIPFPSSEIFRCLPW-------------------R----EE 190 (474)
T ss_dssp HHGGG--TT-EEEEESGGGTTHHHHHHHTT--SEEEEEE-S----HHHHTTSTT-------------------H----HH
T ss_pred HHHHhCcCCCEEEEeCCcHHHHHHHHHhhcCCceEeeEEecCCCCHHHHhhCCc-------------------H----HH
Confidence 344555666 655555445555533 2 24578899999999876655432211 1 11
Q ss_pred HHHHHHHHHhcccCEEEEcChhHHHHHHHHh----cc--------------CCceEEEcCCCCchhhhccCC--------
Q psy15555 230 VFALLYSHVGKYSDIIMVNSSWTEEHVIQLW----NC--------------QLKTYKLYPPCDTEDLKKITH-------- 283 (488)
Q Consensus 230 ~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~----~~--------------~~k~~vi~~~~d~~~~~~~~~-------- 283 (488)
++ ..+-.+|.|-+++...++.|.... +. ..++.+.|-|+|++.+.....
T Consensus 191 iL-----~glL~aDlIgFqt~~~~~nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~ 265 (474)
T PF00982_consen 191 IL-----RGLLGADLIGFQTFEYARNFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERA 265 (474)
T ss_dssp HH-----HHHTTSSEEEESSHHHHHHHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHH
T ss_pred HH-----HHhhcCCEEEEecHHHHHHHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHH
Confidence 11 133568999999999999986532 11 013667778899887754321
Q ss_pred -----CCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcH---HHHHHHHHHHHh---
Q psy15555 284 -----SKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDE---VCVKDMQDLCKH--- 352 (488)
Q Consensus 284 -----~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~---~~~~~l~~~~~~--- 352 (488)
...++..+++.+.|++..||+..=+.|+.++.+++|+ ...++.|+-++-......+ +..+++.+++.+
T Consensus 266 ~~l~~~~~~~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~-~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~ 344 (474)
T PF00982_consen 266 EELREKFKGKRKIIVGVDRLDYTKGIPEKLRAFERFLERYPE-YRGKVVLIQIAVPSREDVPEYQELRREVEELVGRING 344 (474)
T ss_dssp HHHHHHTTT-SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GG-GTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcEEEEEeccchhhcCHHHHHHHHHHHHHhCcC-ccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHh
Confidence 1223358999999999999999999999999999842 1234666655543222222 334455554443
Q ss_pred -cCCC--CcEEE-ecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCc----EEEeCCCCCccceeccCCCccc
Q psy15555 353 -LSLE--NNVEF-KVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLI----MIAHKSGGPKMDIVIEDPETCR 424 (488)
Q Consensus 353 -~~l~--~~v~~-~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~P----vI~~~~~~~~~eiv~~~~~~~~ 424 (488)
+|-. ..|.+ .+.++.+++..+|+.||+++.+|..+|..++..|+.+|-.+ +|.|...|.. +.+.++
T Consensus 345 ~~g~~~~~PI~~~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefaGaa-~~L~~~----- 418 (474)
T PF00982_consen 345 KYGTPDWTPIIYIYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFAGAA-EQLSEA----- 418 (474)
T ss_dssp HH-BTTB-SEEEE-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-TS--EEEEETTBGGG-GT-TTS-----
T ss_pred hcccCCceeEEEEecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecCCCCceEeeccCCHH-HHcCCc-----
Confidence 2311 12444 45689999999999999999999999999999999999655 6778887776 555432
Q ss_pred cceecC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy15555 425 NGFLAC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 425 ~g~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~ 478 (488)
+++++ |.++++++|.+.++|+++++++.-+..++.+..++....++.+++-++
T Consensus 419 -al~VNP~d~~~~A~ai~~AL~M~~~Er~~r~~~~~~~v~~~~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 419 -ALLVNPWDIEEVADAIHEALTMPPEERKERHARLREYVREHDVQWWAESFLRDLK 473 (474)
T ss_dssp --EEE-TT-HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred -cEEECCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhCCHHHHHHHHHHHhh
Confidence 46666 999999999999998999999988888999999999999999887765
No 99
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=99.60 E-value=8.6e-13 Score=127.28 Aligned_cols=291 Identities=11% Similarity=0.136 Sum_probs=202.1
Q ss_pred HHhhhcCCc-EEEecCCccchhhh-hh-hhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHH
Q psy15555 153 EALLSFQPD-IYIDTMGYAFTYPL-FS-YIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYK 229 (488)
Q Consensus 153 ~~l~~~~pD-iii~~~~~~~~~~~-~~-~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (488)
+..+..+|| +|..+......+|. ++ .....++.+++|+|+.+.++...++.+ ..
T Consensus 116 ~v~~~~~~~D~VWVHDYhL~llp~~LR~~~~~~~IgFFlHiPFPs~eifr~LP~r-----------------------~e 172 (474)
T PRK10117 116 KLLPLLKDDDIIWIHDYHLLPFASELRKRGVNNRIGFFLHIPFPTPEIFNALPPH-----------------------DE 172 (474)
T ss_pred HHHHhcCCCCEEEEeccHhhHHHHHHHHhCCCCcEEEEEeCCCCChHHHhhCCCh-----------------------HH
Confidence 444555665 66555544444442 22 234678999999999877664422221 11
Q ss_pred HHHHHHHHHhcccCEEEEcChhHHHHHHHHhc-----------------cCCceEEEcCCCCchhhhccCCC--------
Q psy15555 230 VFALLYSHVGKYSDIIMVNSSWTEEHVIQLWN-----------------CQLKTYKLYPPCDTEDLKKITHS-------- 284 (488)
Q Consensus 230 ~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~-----------------~~~k~~vi~~~~d~~~~~~~~~~-------- 284 (488)
++. .+-.+|.|-+++...++.|.+... ...++.+.|-++|++.+......
T Consensus 173 il~-----glL~aDlIGFqt~~y~rnFl~~~~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~~~~~~~~~ 247 (474)
T PRK10117 173 LLE-----QLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAGPLPPKLAQ 247 (474)
T ss_pred HHH-----HHHhCccceeCCHHHHHHHHHHHHHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhchHHHHHHH
Confidence 111 234579999999999988876221 01146667778998877543210
Q ss_pred ---CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCc----HHHHHHHHHHHHhc----
Q psy15555 285 ---KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEED----EVCVKDMQDLCKHL---- 353 (488)
Q Consensus 285 ---~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~----~~~~~~l~~~~~~~---- 353 (488)
...++.+|+-+.|++.-||+..=++|+.++.+++|+- ..++.|+-+.- |...+ .+...++++++.+-
T Consensus 248 lr~~~~~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~-~gkvvlvQia~-psR~~v~~Y~~l~~~v~~~vg~INg~f 325 (474)
T PRK10117 248 LKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQH-HGKIRYTQIAP-TSRGDVQAYQDIRHQLETEAGRINGKY 325 (474)
T ss_pred HHHHcCCCeEEEEecccccccCHHHHHHHHHHHHHhChhh-cCCEEEEEEcC-CCCCccHHHHHHHHHHHHHHHHHHhcc
Confidence 1235778999999999999999999999999887421 12455664542 22222 22334444444432
Q ss_pred CCC--CcEEEe-cCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCC-----cEEEeCCCCCccceeccCCCcccc
Q psy15555 354 SLE--NNVEFK-VNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGL-----IMIAHKSGGPKMDIVIEDPETCRN 425 (488)
Q Consensus 354 ~l~--~~v~~~-g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~-----PvI~~~~~~~~~eiv~~~~~~~~~ 425 (488)
|-. ..|.++ ..++.+++..+|+.||+.+.+|..+|+.++..|+.+|-. +.|.|...|.. +.+. .
T Consensus 326 g~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~~~GvLILSefAGaA-~~L~-------~ 397 (474)
T PRK10117 326 GQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAA-NELT-------S 397 (474)
T ss_pred CCCCceeEEEecCCCCHHHHHHHHHhccEEEecccccccccccchheeeecCCCCccEEEecccchH-HHhC-------C
Confidence 211 124444 567999999999999999999999999999999999965 37778887776 4442 2
Q ss_pred ceecC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhh
Q psy15555 426 GFLAC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLF 481 (488)
Q Consensus 426 g~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~ 481 (488)
+++++ |.++++++|.+.++|+++++++..+..++.+..++....++.+++-+..+-
T Consensus 398 AllVNP~d~~~~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~~~dv~~W~~~fL~~L~~~~ 455 (474)
T PRK10117 398 ALIVNPYDRDEVAAALDRALTMPLAERISRHAEMLDVIVKNDINHWQECFISDLKQIV 455 (474)
T ss_pred CeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhh
Confidence 56666 999999999999999999999988888898999999999999998887764
No 100
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.59 E-value=2.4e-13 Score=131.60 Aligned_cols=250 Identities=14% Similarity=0.143 Sum_probs=151.8
Q ss_pred HHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCC----------C--------------C-CC
Q psy15555 233 LLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITH----------S--------------K-TD 287 (488)
Q Consensus 233 ~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~----------~--------------~-~~ 287 (488)
.+++.+...||++.++|+-++.....+.+.... .|+|||++.+.+....+ + . .+
T Consensus 213 ~iEraaA~~AdvFTTVSeITa~Ea~~LL~r~pD-vV~pNGl~v~~~~~~~efqnl~~~~k~ki~~fv~~~f~g~~dfd~d 291 (633)
T PF05693_consen 213 SIERAAAHYADVFTTVSEITAKEAEHLLKRKPD-VVTPNGLNVDKFPALHEFQNLHAKAKEKIHEFVRGHFYGHYDFDLD 291 (633)
T ss_dssp HHHHHHHHHSSEEEESSHHHHHHHHHHHSS--S-EE----B-GGGTSSTTHHHHHHHHHHHHHHHHHHHHSTT---S-GG
T ss_pred HHHHHHHHhcCeeeehhhhHHHHHHHHhCCCCC-EEcCCCccccccccchHHHHHHHHHHHHHHHHHHHHhcccCCCCcc
Confidence 367788899999999999999999987775433 58899998776544321 0 1 13
Q ss_pred CCeEEEEeeccC-CCCChHHHHHHHHHhHHhhhhh--ccCceEEEEEecCCCCCcHH------HHHHHHHHHH-------
Q psy15555 288 GPVKIISVAQFR-PEKDHPLQLRAMYQLRQIISEE--LWDNLKLIFIGSTRNEEDEV------CVKDMQDLCK------- 351 (488)
Q Consensus 288 ~~~~i~~~g~~~-~~k~~~~ll~a~~~l~~~~~~~--~~~~~~l~ivG~~~~~~~~~------~~~~l~~~~~------- 351 (488)
+..++...||.+ ..||++.+|+|+.+|....... ...=+-|+|++.....-+.+ ..+++++-+.
T Consensus 292 ~tl~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~~ve~l~~~a~~~~l~~t~~~i~~~~g 371 (633)
T PF05693_consen 292 KTLYFFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSFNVESLKGQAVTKQLRDTVDEIQEKIG 371 (633)
T ss_dssp GEEEEEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeeeceeeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCcCHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 456777788888 6799999999999997542110 01124577777653222111 1111111111
Q ss_pred --------hcCCC--------------------------------------------------------Cc--EEEecC-
Q psy15555 352 --------HLSLE--------------------------------------------------------NN--VEFKVN- 364 (488)
Q Consensus 352 --------~~~l~--------------------------------------------------------~~--v~~~g~- 364 (488)
.-.++ ++ |+|++.
T Consensus 372 ~~~~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~irr~~L~N~~~drVKVIF~P~y 451 (633)
T PF05693_consen 372 KRLFESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNMIRRLGLFNNPEDRVKVIFHPEY 451 (633)
T ss_dssp HHHHHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHHHHHTT----TT-SEEEEE--S-
T ss_pred HHHHHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHHHHhCCCCCCCCCceEEEEeecc
Confidence 00111 22 445432
Q ss_pred CC------hHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccC-CCcccccee-cC----C-
Q psy15555 365 LP------YEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIED-PETCRNGFL-AC----D- 431 (488)
Q Consensus 365 ~~------~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~-~~~~~~g~~-~~----~- 431 (488)
++ .-+..+++..||+.|+||.+|++|.+++|+.++|+|.|+++..|.. ..+.+. +.....|+. ++ +
T Consensus 452 L~~~dgif~l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG-~~~~~~~~~~~~~GV~VvdR~~~n~ 530 (633)
T PF05693_consen 452 LSGTDGIFNLDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFG-CWMQEHIEDPEEYGVYVVDRRDKNY 530 (633)
T ss_dssp --TTSSSS-S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHH-HHHHTTS-HHGGGTEEEE-SSSS-H
T ss_pred ccCCCCCCCCCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHH-HHHHHhhccCcCCcEEEEeCCCCCH
Confidence 11 2378899999999999999999999999999999999999997654 222221 000134554 33 3
Q ss_pred ---HHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhh
Q psy15555 432 ---EVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLFKVM 484 (488)
Q Consensus 432 ---~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~~~ 484 (488)
.+++++.|.++..+++..+..+.+++.+.++..+|+.+...|.+.++-++++.
T Consensus 531 ~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~dW~~~~~yY~~Ay~~AL~~a 586 (633)
T PF05693_consen 531 DESVNQLADFLYKFCQLSRRQRIIQRNRAERLSDLADWKNFGKYYEKAYDLALRRA 586 (633)
T ss_dssp HHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHGGGGBHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 56677778888877888899999999888899999999999999998777643
No 101
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.56 E-value=3.5e-12 Score=121.92 Aligned_cols=321 Identities=9% Similarity=0.030 Sum_probs=176.3
Q ss_pred CCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeeccCchhHHHHH
Q psy15555 63 NAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEASLYPYFTLLG 142 (488)
Q Consensus 63 ~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 142 (488)
+.+||--.-+..++++|.++ +++|.++++..+. ..+..+. .. +.+..++.........+..+....
T Consensus 9 GGTGGHi~Pala~a~~l~~~--g~~v~~vg~~~~~-e~~l~~~----------~g-~~~~~~~~~~l~~~~~~~~~~~~~ 74 (352)
T PRK12446 9 GGSAGHVTPNLAIIPYLKED--NWDISYIGSHQGI-EKTIIEK----------EN-IPYYSISSGKLRRYFDLKNIKDPF 74 (352)
T ss_pred CCcHHHHHHHHHHHHHHHhC--CCEEEEEECCCcc-ccccCcc----------cC-CcEEEEeccCcCCCchHHHHHHHH
Confidence 33444446688899999986 6777777765332 1111111 11 334444322221122233344444
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEecCCccchhh-hhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccch
Q psy15555 143 QSIGSMILGVEALLSFQPDIYIDTMGYAFTYP-LFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILT 221 (488)
Q Consensus 143 ~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~-~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (488)
..+.......+++++++||+|+.+.++..... ++....++|++++-. |...+
T Consensus 75 ~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~---------------------------n~~~g 127 (352)
T PRK12446 75 LVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHES---------------------------DMTPG 127 (352)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECC---------------------------CCCcc
Confidence 44555666778899999999998876664322 334467888866322 11111
Q ss_pred hhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccC----C--CCCCCCeEEEEe
Q psy15555 222 SFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKIT----H--SKTDGPVKIISV 295 (488)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~----~--~~~~~~~~i~~~ 295 (488)
.. .+.+.+.++.+.+.-+...+.+ + .+++.++++|+..+...... . ...+++++++.+
T Consensus 128 ~~-----------nr~~~~~a~~v~~~f~~~~~~~----~-~~k~~~tG~Pvr~~~~~~~~~~~~~~~~l~~~~~~iLv~ 191 (352)
T PRK12446 128 LA-----------NKIALRFASKIFVTFEEAAKHL----P-KEKVIYTGSPVREEVLKGNREKGLAFLGFSRKKPVITIM 191 (352)
T ss_pred HH-----------HHHHHHhhCEEEEEccchhhhC----C-CCCeEEECCcCCcccccccchHHHHhcCCCCCCcEEEEE
Confidence 11 1123455687776654433222 2 34788999998754432111 0 122445666666
Q ss_pred eccCCCCChHH-HHHHHHHhHHhhhhhccCceEEEE-EecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHH
Q psy15555 296 AQFRPEKDHPL-QLRAMYQLRQIISEELWDNLKLIF-IGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKE 373 (488)
Q Consensus 296 g~~~~~k~~~~-ll~a~~~l~~~~~~~~~~~~~l~i-vG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~ 373 (488)
|....-+.+.. +.+++..+. .++++++ +|.. + .++.. ... .++...+++ .+++..+
T Consensus 192 GGS~Ga~~in~~~~~~l~~l~--------~~~~vv~~~G~~------~-~~~~~---~~~---~~~~~~~f~-~~~m~~~ 249 (352)
T PRK12446 192 GGSLGAKKINETVREALPELL--------LKYQIVHLCGKG------N-LDDSL---QNK---EGYRQFEYV-HGELPDI 249 (352)
T ss_pred CCccchHHHHHHHHHHHHhhc--------cCcEEEEEeCCc------h-HHHHH---hhc---CCcEEecch-hhhHHHH
Confidence 65544444433 233333332 2455544 4532 1 12211 111 133445664 2579999
Q ss_pred HHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCC-C---cc----ceeccCCCccccceecC----CHHHHHHHHHH
Q psy15555 374 FSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGG-P---KM----DIVIEDPETCRNGFLAC----DEVEYAQTIKL 441 (488)
Q Consensus 374 ~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~-~---~~----eiv~~~~~~~~~g~~~~----~~~~l~~~i~~ 441 (488)
|+.||++|.- +++.++.|++++|+|.|..+... . .+ +.+.+. +.+.... +++.+.+++.+
T Consensus 250 ~~~adlvIsr----~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~----g~~~~l~~~~~~~~~l~~~l~~ 321 (352)
T PRK12446 250 LAITDFVISR----AGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQ----GYASVLYEEDVTVNSLIKHVEE 321 (352)
T ss_pred HHhCCEEEEC----CChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHC----CCEEEcchhcCCHHHHHHHHHH
Confidence 9999988863 45789999999999999986531 1 01 123333 4555543 68899999999
Q ss_pred HHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy15555 442 ILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 442 ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~ 478 (488)
+++ |++.+++ ++ +.+.....++++.+.+.
T Consensus 322 ll~-~~~~~~~---~~----~~~~~~~aa~~i~~~i~ 350 (352)
T PRK12446 322 LSH-NNEKYKT---AL----KKYNGKEAIQTIIDHIS 350 (352)
T ss_pred HHc-CHHHHHH---HH----HHcCCCCHHHHHHHHHH
Confidence 998 7766542 22 23344455555555543
No 102
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.54 E-value=7.4e-12 Score=126.08 Aligned_cols=184 Identities=14% Similarity=0.164 Sum_probs=139.8
Q ss_pred CCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCC--CcHHHHHHHHHHHHhcCCCCcEEEecC
Q psy15555 287 DGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNE--EDEVCVKDMQDLCKHLSLENNVEFKVN 364 (488)
Q Consensus 287 ~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~--~~~~~~~~l~~~~~~~~l~~~v~~~g~ 364 (488)
++.+.+++++|+...|+.++++.++.++.+-..+. ..++++++.|.+... ...++.+.+.+++++...+++|.|+..
T Consensus 387 pd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~-~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~ 465 (601)
T TIGR02094 387 PDVLTIGFARRFATYKRADLIFRDLERLARILNNP-ERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLEN 465 (601)
T ss_pred CCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCC-CCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEcC
Confidence 35568999999999999999999988887421000 026899999987422 122355667777766445678999887
Q ss_pred CChHHHHHHHHhCcEEEE-cCC-CCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC------------
Q psy15555 365 LPYEDMKKEFSEGLIGLH-AMW-NEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC------------ 430 (488)
Q Consensus 365 ~~~~el~~~~~~ad~~v~-~s~-~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~------------ 430 (488)
.+..--..+++.||++++ ||. .|..|++-+=||..|.+.+++-.|... |.. ++ .+||.+.
T Consensus 466 Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~-E~~-~~----~nGf~f~~~~~~~~~~~~d 539 (601)
T TIGR02094 466 YDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWG-EGY-DG----DNGWAIGDGEEYDDEEEQD 539 (601)
T ss_pred CCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCccc-ccC-CC----CcEEEECCCcccccccccc
Confidence 777777789999999999 888 999999999999999999999877665 544 34 6888764
Q ss_pred --CHHHHHHHHHHHH----ccC-----HHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHH
Q psy15555 431 --DEVEYAQTIKLIL----HLS-----QDTKTRISQNAVSSV-DRFSMEEFKNGFLTFT 477 (488)
Q Consensus 431 --~~~~l~~~i~~ll----~~~-----~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~ 477 (488)
|+++|.++|++.+ ..+ |+...++.++|.+.. ..|||++++++|.+.|
T Consensus 540 ~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 540 RLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 5778888886544 213 445788888888765 7899999999998875
No 103
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=99.54 E-value=3.6e-14 Score=121.52 Aligned_cols=157 Identities=18% Similarity=0.177 Sum_probs=90.5
Q ss_pred EEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeecc
Q psy15555 54 TVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEAS 133 (488)
Q Consensus 54 rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 133 (488)
+..|+|.... |+...+.+|+++|.+++|++.+++++.++++ .+... ..+ .+. +.+.++|.|..
T Consensus 22 ~~iWiHa~Sv---GE~~a~~~Li~~l~~~~p~~~illT~~T~tg--~~~~~---~~~----~~~-v~~~~~P~D~~---- 84 (186)
T PF04413_consen 22 PLIWIHAASV---GEVNAARPLIKRLRKQRPDLRILLTTTTPTG--REMAR---KLL----PDR-VDVQYLPLDFP---- 84 (186)
T ss_dssp T-EEEE-SSH---HHHHHHHHHHHHHTT---TS-EEEEES-CCH--HHHHH---GG-----GGG--SEEE---SSH----
T ss_pred CcEEEEECCH---HHHHHHHHHHHHHHHhCCCCeEEEEecCCch--HHHHH---HhC----CCC-eEEEEeCccCH----
Confidence 6778886554 5779999999999999999999999998553 22222 122 123 66777888877
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhcCCcEE--EecCCccchhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCc
Q psy15555 134 LYPYFTLLGQSIGSMILGVEALLSFQPDIY--IDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNS 211 (488)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~pDii--i~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~ 211 (488)
..+.+++++++||++ ++++.||+++..++ ..++|+++
T Consensus 85 ---------------~~~~rfl~~~~P~~~i~~EtElWPnll~~a~-~~~ip~~L------------------------- 123 (186)
T PF04413_consen 85 ---------------WAVRRFLDHWRPDLLIWVETELWPNLLREAK-RRGIPVVL------------------------- 123 (186)
T ss_dssp ---------------HHHHHHHHHH--SEEEEES----HHHHHH------S-EEE-------------------------
T ss_pred ---------------HHHHHHHHHhCCCEEEEEccccCHHHHHHHh-hcCCCEEE-------------------------
Confidence 558899999999944 58999999998887 88999988
Q ss_pred cccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCC
Q psy15555 212 QRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPP 272 (488)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~ 272 (488)
.|++.+..+...|+.+..+.+.+++..|.|+++|+.+++++.+++..++++.+.+|-
T Consensus 124 ----vNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs~~da~r~~~lG~~~~~v~v~Gnl 180 (186)
T PF04413_consen 124 ----VNARLSERSFRRYRRFPFLFRPLLSRFDRILAQSEADAERFRKLGAPPERVHVTGNL 180 (186)
T ss_dssp ----EEE--------------HHHHHHGGG-SEEEESSHHHHHHHHTTT-S--SEEE---G
T ss_pred ----EeeeeccccchhhhhhHHHHHHHHHhCCEEEECCHHHHHHHHHcCCCcceEEEeCcc
Confidence 677888888888888888999999999999999999999999988877789998875
No 104
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.53 E-value=3.4e-12 Score=123.82 Aligned_cols=192 Identities=8% Similarity=0.073 Sum_probs=140.0
Q ss_pred cccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhh
Q psy15555 240 KYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIIS 319 (488)
Q Consensus 240 ~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~ 319 (488)
.+.|.||++++...+.+.+.++...++.++|-|+-.+ .... ......++.++. ...++++..+.++.
T Consensus 238 ~~~~~iIv~T~~q~~di~~r~~~~~~~~~ip~g~i~~---~~~~--~r~~~~~l~~t~-------s~~I~~i~~Lv~~l- 304 (438)
T TIGR02919 238 TRNKKIIIPNKNEYEKIKELLDNEYQEQISQLGYLYP---FKKD--NKYRKQALILTN-------SDQIEHLEEIVQAL- 304 (438)
T ss_pred cccCeEEeCCHHHHHHHHHHhCcccCceEEEEEEEEe---eccc--cCCcccEEEECC-------HHHHHHHHHHHHhC-
Confidence 6679999999998888888887555667666664321 1111 122345566662 78899999999998
Q ss_pred hhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHc
Q psy15555 320 EELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAA 399 (488)
Q Consensus 320 ~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~ 399 (488)
|+++|.| |.+.+ ..++|.++ +++ ++.+.+.|. ...++.++|..||+++..|..|+++.++.||+..
T Consensus 305 ----Pd~~f~I-ga~te-----~s~kL~~L-~~y--~nvvly~~~-~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~ 370 (438)
T TIGR02919 305 ----PDYHFHI-AALTE-----MSSKLMSL-DKY--DNVKLYPNI-TTQKIQELYQTCDIYLDINHGNEILNAVRRAFEY 370 (438)
T ss_pred ----CCcEEEE-EecCc-----ccHHHHHH-Hhc--CCcEEECCc-ChHHHHHHHHhccEEEEccccccHHHHHHHHHHc
Confidence 9999999 76653 12667777 554 444555554 4458999999999999999999999999999999
Q ss_pred CCcEEEeCCC-CCccceeccCCCccccceecC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHH
Q psy15555 400 GLIMIAHKSG-GPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSME 467 (488)
Q Consensus 400 G~PvI~~~~~-~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~ 467 (488)
|+||++.+.. ++. +++.+ |.+++ ++++|+++|.+++. +++..++.-..-++.+..-+.+
T Consensus 371 G~pI~afd~t~~~~-~~i~~-------g~l~~~~~~~~m~~~i~~lL~-d~~~~~~~~~~q~~~a~~~~~~ 432 (438)
T TIGR02919 371 NLLILGFEETAHNR-DFIAS-------ENIFEHNEVDQLISKLKDLLN-DPNQFRELLEQQREHANDISKE 432 (438)
T ss_pred CCcEEEEecccCCc-ccccC-------CceecCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhccCCHH
Confidence 9999998884 443 66654 45544 99999999999999 8877666555555554444444
No 105
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=1.1e-10 Score=112.35 Aligned_cols=290 Identities=17% Similarity=0.195 Sum_probs=201.8
Q ss_pred HHhhhcCC-cEEEecCCccchhhhh-h-hhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHH
Q psy15555 153 EALLSFQP-DIYIDTMGYAFTYPLF-S-YIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYK 229 (488)
Q Consensus 153 ~~l~~~~p-Diii~~~~~~~~~~~~-~-~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (488)
++.+..++ |+|..+.....++|.. + .....++.+++|.|+.+.++..++..+. .
T Consensus 140 ~i~~~~~~gDiIWVhDYhL~L~P~mlR~~~~~~~IgfFlHiPfPssEvfr~lP~r~-----------------------e 196 (486)
T COG0380 140 KIVEIYEPGDIIWVHDYHLLLVPQMLRERIPDAKIGFFLHIPFPSSEVFRCLPWRE-----------------------E 196 (486)
T ss_pred HHHHhcCCCCEEEEEechhhhhHHHHHHhCCCceEEEEEeCCCCCHHHHhhCchHH-----------------------H
Confidence 34444454 4665555445555533 2 2346688899999998777765444321 1
Q ss_pred HHHHHHHHHhcccCEEEEcChhHHHHHHHHhcc------------------CCceEEEcCCCCchhhhccCCC-------
Q psy15555 230 VFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNC------------------QLKTYKLYPPCDTEDLKKITHS------- 284 (488)
Q Consensus 230 ~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~------------------~~k~~vi~~~~d~~~~~~~~~~------- 284 (488)
++. .+-.+|.|-++++..++.|.+.... ..++..+|-++|+..+......
T Consensus 197 Il~-----gll~~dligFqt~~y~~nF~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~ 271 (486)
T COG0380 197 ILE-----GLLGADLIGFQTESYARNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKV 271 (486)
T ss_pred HHH-----HhhcCCeeEecCHHHHHHHHHHHHHhccccccccccccccCCceEEEEEEeeecCHHHHHHhhcCCchhhHH
Confidence 111 2346899999999999988764321 1256667778898877654311
Q ss_pred ------CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHH---HHHHHHHHHhc--
Q psy15555 285 ------KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVC---VKDMQDLCKHL-- 353 (488)
Q Consensus 285 ------~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~---~~~l~~~~~~~-- 353 (488)
...++.+++.+.|++.-||+..=+.|+.++..++|+- ..++.++-+......+.++| ..++++.+.+.
T Consensus 272 ~el~~~~~~~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~-~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~ 350 (486)
T COG0380 272 LELKAELGRNKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEW-RGKVVLLQIAPPSREDVEEYQALRLQIEELVGRING 350 (486)
T ss_pred HHHHHHhcCCceEEEEehhcccccCcHHHHHHHHHHHHhChhh-hCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHh
Confidence 2234788999999999999999999999999887321 12456665554443333333 23333333321
Q ss_pred --CCC--CcEEEe-cCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHc----CCcEEEeCCCCCccceeccCCCccc
Q psy15555 354 --SLE--NNVEFK-VNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAA----GLIMIAHKSGGPKMDIVIEDPETCR 424 (488)
Q Consensus 354 --~l~--~~v~~~-g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~----G~PvI~~~~~~~~~eiv~~~~~~~~ 424 (488)
|-. ..|.++ -.++.+++..+|+.||+++.+|..+|+.++..|+.+| +=|.|-|...|.. ..+.
T Consensus 351 ~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q~~~~G~LiLSeFaGaa-~~L~------- 422 (486)
T COG0380 351 EFGSLSWTPVHYLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVAAQRDKPGVLILSEFAGAA-SELR------- 422 (486)
T ss_pred hcCCCCcceeEEEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHHhhcCCCCcEEEeccccch-hhhc-------
Confidence 211 234444 4589999999999999999999999999999999998 3467777777765 3332
Q ss_pred cceecC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q psy15555 425 NGFLAC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQP 479 (488)
Q Consensus 425 ~g~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~ 479 (488)
..++++ |.++++++|.+.++++++++++.-+...+.+..++...+++.+++-+..
T Consensus 423 ~AliVNP~d~~~va~ai~~AL~m~~eEr~~r~~~~~~~v~~~d~~~W~~~fl~~la~ 479 (486)
T COG0380 423 DALIVNPWDTKEVADAIKRALTMSLEERKERHEKLLKQVLTHDVARWANSFLDDLAQ 479 (486)
T ss_pred cCEeECCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 356766 9999999999999999999998888888888889999999998877765
No 106
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=99.47 E-value=3.3e-11 Score=126.09 Aligned_cols=292 Identities=13% Similarity=0.108 Sum_probs=199.4
Q ss_pred HHhhhcCC--cEEEecCCccchhhhh-h-hhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHH
Q psy15555 153 EALLSFQP--DIYIDTMGYAFTYPLF-S-YIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYY 228 (488)
Q Consensus 153 ~~l~~~~p--Diii~~~~~~~~~~~~-~-~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (488)
+..+..+| |+|..+.....++|.+ + .....++.+++|.|+.+.++...++-+ .
T Consensus 193 ~v~~~~~~~~d~VWVhDYhL~llP~~LR~~~~~~~IgfFlHiPFPs~eifr~LP~r-----------------------~ 249 (854)
T PLN02205 193 RIMEVINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIR-----------------------E 249 (854)
T ss_pred HHHHHhCCCCCEEEEeCchhhHHHHHHHhhCCCCcEEEEecCCCCChHHHhhCCcH-----------------------H
Confidence 33455567 5665555455555533 2 245678899999999777664322211 1
Q ss_pred HHHHHHHHHHhcccCEEEEcChhHHHHHHHHh----cc----------------CCceEEEcCCCCchhhhccCC-----
Q psy15555 229 KVFALLYSHVGKYSDIIMVNSSWTEEHVIQLW----NC----------------QLKTYKLYPPCDTEDLKKITH----- 283 (488)
Q Consensus 229 ~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~----~~----------------~~k~~vi~~~~d~~~~~~~~~----- 283 (488)
.++ ..+-.+|.|-+++...++.|.+.. +. ..++.+.|-++|...+.....
T Consensus 250 eiL-----~glL~aDlIGFht~~yar~Fl~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~~ 324 (854)
T PLN02205 250 ELL-----RALLNSDLIGFHTFDYARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETE 324 (854)
T ss_pred HHH-----HHHhcCCeEEecCHHHHHHHHHHHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhHH
Confidence 111 133468999999999999987721 11 114566777899887654321
Q ss_pred --------CCC-CCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCC---CCcHHHHHHHHHHHH
Q psy15555 284 --------SKT-DGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRN---EEDEVCVKDMQDLCK 351 (488)
Q Consensus 284 --------~~~-~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~---~~~~~~~~~l~~~~~ 351 (488)
... +++.+++-+.|++.-||+..=+.|+.++.+++|+- ..++.|+-+..... .+..+...++.+++.
T Consensus 325 ~~~~~l~~~~~~~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~-~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~ 403 (854)
T PLN02205 325 AKVKELIKQFCDQDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEW-QGKVVLVQIANPARGKGKDVKEVQAETHSTVK 403 (854)
T ss_pred HHHHHHHHHhccCCCEEEEEccCcccccCHHHHHHHHHHHHHhCccc-cCCEEEEEEecCCCcccHHHHHHHHHHHHHHH
Confidence 111 25789999999999999999999999999988321 11345554442211 112233344445544
Q ss_pred hc----CCC--CcEEEe-cCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCC-------------------cEEE
Q psy15555 352 HL----SLE--NNVEFK-VNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGL-------------------IMIA 405 (488)
Q Consensus 352 ~~----~l~--~~v~~~-g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~-------------------PvI~ 405 (488)
+- |-. ..|+++ ..++.+|+..+|+.||+++.++..+|+.++..|+.+|.. .+|.
T Consensus 404 rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiL 483 (854)
T PLN02205 404 RINETFGKPGYDPIVLIDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVV 483 (854)
T ss_pred HHHhhcCCCCCceEEEEecCCCHHHHHHHHHhccEEEeccccccccccchheeEEccCccccccccccccccCCCCceEe
Confidence 32 211 235555 568999999999999999999999999999999999853 3566
Q ss_pred eCCCCCccceeccCCCccccceecC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhh
Q psy15555 406 HKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLF 481 (488)
Q Consensus 406 ~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~ 481 (488)
|...|...++ . .+++++ |.++++++|.+.+.+++++++..-++.++++..++...+++.+++-++...
T Consensus 484 SEfaGaa~~L-~-------~Ai~VNP~d~~~~a~ai~~AL~m~~~Er~~R~~~~~~~v~~~d~~~W~~~fl~~l~~~~ 553 (854)
T PLN02205 484 SEFIGCSPSL-S-------GAIRVNPWNIDAVADAMDSALEMAEPEKQLRHEKHYRYVSTHDVGYWARSFLQDLERTC 553 (854)
T ss_pred eeccchhHHh-C-------cCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 7676665333 2 256665 999999999999998888888888888888899999999999988887763
No 107
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.40 E-value=1.1e-12 Score=99.63 Aligned_cols=90 Identities=26% Similarity=0.350 Sum_probs=82.1
Q ss_pred EEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy15555 380 GLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILHLSQDTKTRISQNAVS 459 (488)
Q Consensus 380 ~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~a~~ 459 (488)
++.++...+++..++|+||||+|+|+.+.++.. +++.++ ..++.++|++++.+++..+++ |++.+++++++|++
T Consensus 2 ~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~-~~~~~~----~~~~~~~~~~el~~~i~~ll~-~~~~~~~ia~~a~~ 75 (92)
T PF13524_consen 2 NLNPSRSDGPNMRIFEAMACGTPVISDDSPGLR-EIFEDG----EHIITYNDPEELAEKIEYLLE-NPEERRRIAKNARE 75 (92)
T ss_pred EeeCCCCCCCchHHHHHHHCCCeEEECChHHHH-HHcCCC----CeEEEECCHHHHHHHHHHHHC-CHHHHHHHHHHHHH
Confidence 567888888999999999999999999988776 788877 778888999999999999999 99999999999999
Q ss_pred HH-hhcCHHHHHHHHHH
Q psy15555 460 SV-DRFSMEEFKNGFLT 475 (488)
Q Consensus 460 ~~-~~~s~~~~~~~~~~ 475 (488)
.+ ++|+|+..++++++
T Consensus 76 ~v~~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 76 RVLKRHTWEHRAEQILE 92 (92)
T ss_pred HHHHhCCHHHHHHHHHC
Confidence 99 89999999998863
No 108
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.35 E-value=1.4e-09 Score=111.76 Aligned_cols=185 Identities=14% Similarity=0.203 Sum_probs=137.8
Q ss_pred CeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCC-CCC-cHHHHHHHHHHHHhcCCCCcEEEecCCC
Q psy15555 289 PVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTR-NEE-DEVCVKDMQDLCKHLSLENNVEFKVNLP 366 (488)
Q Consensus 289 ~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~-~~~-~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 366 (488)
.+.+++++|+...|+.++++..+.++.+-..+.. .+++++++|.+. ..+ ..+..+.+.+++++...+++|.|+...+
T Consensus 478 ~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~-~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVvfle~Yd 556 (778)
T cd04299 478 VLTIGFARRFATYKRATLLLRDPERLKRLLNDPE-RPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIVFLEDYD 556 (778)
T ss_pred ccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCC-CCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEEEEcCCC
Confidence 3489999999999999999999888865221100 368999999763 221 2345556666666555667899998877
Q ss_pred hHHHHHHHHhCcEEEEcCC--CCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCC-------------
Q psy15555 367 YEDMKKEFSEGLIGLHAMW--NEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACD------------- 431 (488)
Q Consensus 367 ~~el~~~~~~ad~~v~~s~--~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~------------- 431 (488)
..--..+++.||+++++|. .|..|.+=+=||..|.+-+++-.|... |-. ++ .+||.+.+
T Consensus 557 ~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~-E~~-~g----~nGwaig~~~~~~~~~~~d~~ 630 (778)
T cd04299 557 MALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWD-EGY-DG----ENGWAIGDGDEYEDDEYQDAE 630 (778)
T ss_pred HHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCccc-ccc-CC----CCceEeCCCccccChhhcchh
Confidence 7777889999999999998 999999999999999999999877665 554 45 68888742
Q ss_pred -HHHHHHHHHH----HHccC-----HHHHHHHHHHHHHHH-hhcCHHHHHHHHHH-HHHHh
Q psy15555 432 -EVEYAQTIKL----ILHLS-----QDTKTRISQNAVSSV-DRFSMEEFKNGFLT-FTQPL 480 (488)
Q Consensus 432 -~~~l~~~i~~----ll~~~-----~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~-~~~~~ 480 (488)
.++|.+.|++ +.-.. |....+|.+++.+.. ..||+++++++|.+ +|..+
T Consensus 631 da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y~p~ 691 (778)
T cd04299 631 EAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERFYLPA 691 (778)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhHHHH
Confidence 3445555543 22212 667888888888877 89999999999875 44443
No 109
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.33 E-value=1e-11 Score=107.12 Aligned_cols=175 Identities=19% Similarity=0.151 Sum_probs=93.8
Q ss_pred EEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeeccC
Q psy15555 55 VAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEASL 134 (488)
Q Consensus 55 I~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 134 (488)
|++++......||+|+++.+++++|.++ |+++.+++.......... . ....... .......
T Consensus 1 ili~~~~~~~~GG~e~~~~~l~~~l~~~--G~~v~v~~~~~~~~~~~~-------~--------~~~~~~~--~~~~~~~ 61 (177)
T PF13439_consen 1 ILITNIFLPNIGGAERVVLNLARALAKR--GHEVTVVSPGVKDPIEEE-------L--------VKIFVKI--PYPIRKR 61 (177)
T ss_dssp -EEECC-TTSSSHHHHHHHHHHHHHHHT--T-EEEEEESS-TTS-SST-------E--------EEE---T--T-SSTSS
T ss_pred CEEEEecCCCCChHHHHHHHHHHHHHHC--CCEEEEEEcCCCccchhh-------c--------cceeeee--ecccccc
Confidence 5677777888899999999999999999 556666665533221100 0 0000000 0000000
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCcccc
Q psy15555 135 YPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRV 214 (488)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~ 214 (488)
....+.......+.+++.+||+||.+............. ++|++...|.+... . .
T Consensus 62 ------~~~~~~~~~~~~~~i~~~~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~~~~----~---~----------- 116 (177)
T PF13439_consen 62 ------FLRSFFFMRRLRRLIKKEKPDIVHIHGPPAFWIALLACR-KVPIVYTIHGPYFE----R---R----------- 116 (177)
T ss_dssp --------HHHHHHHHHHHHHHHHT-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HHH------H---H-----------
T ss_pred ------cchhHHHHHHHHHHHHHcCCCeEEecccchhHHHHHhcc-CCCEEEEeCCCccc----c---c-----------
Confidence 011122234566788888999998776444444444333 89999999954310 0 0
Q ss_pred ccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhcc-CCceEEEcCCCCchhh
Q psy15555 215 ANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNC-QLKTYKLYPPCDTEDL 278 (488)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~-~~k~~vi~~~~d~~~~ 278 (488)
........+.......++...+.+|.++++|+.+++.+.+ ++. +.++.+|+||+|.+.|
T Consensus 117 ----~~~~~~~~~~~~~~~~~~~~~~~~~~ii~vS~~~~~~l~~-~~~~~~ki~vI~ngid~~~F 176 (177)
T PF13439_consen 117 ----FLKSKLSPYSYLNFRIERKLYKKADRIIAVSESTKDELIK-FGIPPEKIHVIYNGIDTDRF 176 (177)
T ss_dssp ----TTTTSCCCHHHHHHCTTHHHHCCSSEEEESSHHHHHHHHH-HT--SS-EEE----B-CCCH
T ss_pred ----ccccccchhhhhhhhhhhhHHhcCCEEEEECHHHHHHHHH-hCCcccCCEEEECCccHHHc
Confidence 0000111112222223444578999999999999999999 664 4699999999998876
No 110
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.31 E-value=9.4e-10 Score=101.72 Aligned_cols=261 Identities=15% Similarity=0.069 Sum_probs=145.6
Q ss_pred EEEEeccCCCCCC-CceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 54 TVAFFHPYCNAGG-GGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 54 rI~~~~~~~~~~g-G~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
||+|........| |--..+..||++|.++ ++++++++.+......+.... .+ .++..++...-
T Consensus 1 ~i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~--g~~v~f~~~~~~~~~~~~i~~----------~g-~~v~~~~~~~~--- 64 (279)
T TIGR03590 1 KILFRADASSEIGLGHVMRCLTLARALHAQ--GAEVAFACKPLPGDLIDLLLS----------AG-FPVYELPDESS--- 64 (279)
T ss_pred CEEEEecCCccccccHHHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHH----------cC-CeEEEecCCCc---
Confidence 5777766666555 5557789999999887 667777776643221111111 11 33333322110
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCC-ccch-hhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccC
Q psy15555 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMG-YAFT-YPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNN 210 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~-~~~~-~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~ 210 (488)
+. .-.....+.+++.+||+++..+. .... ...++ ..+.++++ +-...
T Consensus 65 --~~---------~d~~~~~~~l~~~~~d~vV~D~y~~~~~~~~~~k-~~~~~l~~-iDD~~------------------ 113 (279)
T TIGR03590 65 --RY---------DDALELINLLEEEKFDILIVDHYGLDADWEKLIK-EFGRKILV-IDDLA------------------ 113 (279)
T ss_pred --hh---------hhHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHH-HhCCeEEE-EecCC------------------
Confidence 00 00112456777889998775542 1111 11222 23444443 22110
Q ss_pred ccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHh-ccCCceEEEcC---CCCchhhhccCCCCC
Q psy15555 211 SQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLW-NCQLKTYKLYP---PCDTEDLKKITHSKT 286 (488)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~-~~~~k~~vi~~---~~d~~~~~~~~~~~~ 286 (488)
. . -..+|.++-.+.. .+...-.. ..+......++ ++..+.....+....
T Consensus 114 -----~---~------------------~~~~D~vin~~~~-~~~~~y~~~~~~~~~~l~G~~Y~~lr~eF~~~~~~~~~ 166 (279)
T TIGR03590 114 -----D---R------------------PHDCDLLLDQNLG-ADASDYQGLVPANCRLLLGPSYALLREEFYQLATANKR 166 (279)
T ss_pred -----C---C------------------CcCCCEEEeCCCC-cCHhHhcccCcCCCeEEecchHHhhhHHHHHhhHhhhc
Confidence 0 0 0146888888765 33222111 11223445555 343333222111111
Q ss_pred --CCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEE-EEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEec
Q psy15555 287 --DGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKL-IFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKV 363 (488)
Q Consensus 287 --~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l-~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g 363 (488)
..+.+++..|..++.+....+++++.++. +++++ +++|.+. ...+++++.++.. .++.+.+
T Consensus 167 ~~~~~~iLi~~GG~d~~~~~~~~l~~l~~~~--------~~~~i~vv~G~~~-----~~~~~l~~~~~~~---~~i~~~~ 230 (279)
T TIGR03590 167 RKPLRRVLVSFGGADPDNLTLKLLSALAESQ--------INISITLVTGSSN-----PNLDELKKFAKEY---PNIILFI 230 (279)
T ss_pred ccccCeEEEEeCCcCCcCHHHHHHHHHhccc--------cCceEEEEECCCC-----cCHHHHHHHHHhC---CCEEEEe
Confidence 23567888888887665567777776653 23333 3566553 1226777776653 4799999
Q ss_pred CCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCC
Q psy15555 364 NLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGP 411 (488)
Q Consensus 364 ~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~ 411 (488)
++ +++.++|+.||++|.. .|.++.|++++|+|+|+.+...+
T Consensus 231 ~~--~~m~~lm~~aDl~Is~-----~G~T~~E~~a~g~P~i~i~~~~n 271 (279)
T TIGR03590 231 DV--ENMAELMNEADLAIGA-----AGSTSWERCCLGLPSLAICLAEN 271 (279)
T ss_pred CH--HHHHHHHHHCCEEEEC-----CchHHHHHHHcCCCEEEEEeccc
Confidence 98 8999999999998874 46899999999999999876433
No 111
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=99.29 E-value=1.2e-08 Score=98.51 Aligned_cols=178 Identities=12% Similarity=0.123 Sum_probs=121.0
Q ss_pred CCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCC-CcEEEecC
Q psy15555 286 TDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLE-NNVEFKVN 364 (488)
Q Consensus 286 ~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~ 364 (488)
+++.+++++..++ .|--...++++.++.++. |+.+|++...... -.+.+++.+++.|+. +++.|.+.
T Consensus 282 p~d~vvF~~fn~~--~KI~p~~l~~W~~IL~~v-----P~S~L~L~~~~~~-----~~~~l~~~~~~~Gv~~~Ri~f~~~ 349 (468)
T PF13844_consen 282 PEDAVVFGSFNNL--FKISPETLDLWARILKAV-----PNSRLWLLRFPAS-----GEARLRRRFAAHGVDPDRIIFSPV 349 (468)
T ss_dssp -SSSEEEEE-S-G--GG--HHHHHHHHHHHHHS-----TTEEEEEEETSTT-----HHHHHHHHHHHTTS-GGGEEEEE-
T ss_pred CCCceEEEecCcc--ccCCHHHHHHHHHHHHhC-----CCcEEEEeeCCHH-----HHHHHHHHHHHcCCChhhEEEcCC
Confidence 3556666666654 577789999999999998 8999988764431 226788889999986 67999999
Q ss_pred CChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCcc----ceeccCCCccccceecCCHHHHHHHHH
Q psy15555 365 LPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKM----DIVIEDPETCRNGFLACDEVEYAQTIK 440 (488)
Q Consensus 365 ~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~----eiv~~~~~~~~~g~~~~~~~~l~~~i~ 440 (488)
.+.+|....|+.+|+++-+ ..-++|.+.+||+.+|+|||+-....... .++... +-.-+++.|.++..+...
T Consensus 350 ~~~~ehl~~~~~~DI~LDT-~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~l---Gl~ElIA~s~~eYv~~Av 425 (468)
T PF13844_consen 350 APREEHLRRYQLADICLDT-FPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRAL---GLPELIADSEEEYVEIAV 425 (468)
T ss_dssp --HHHHHHHGGG-SEEE---SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHH---T-GGGB-SSHHHHHHHHH
T ss_pred CCHHHHHHHhhhCCEEeeC-CCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHc---CCchhcCCCHHHHHHHHH
Confidence 8999999999999999876 44566889999999999999965432210 122221 022355679999999999
Q ss_pred HHHccCHHHHHHHHHHHHHHH---hhcCHHHHHHHHHHHHHHh
Q psy15555 441 LILHLSQDTKTRISQNAVSSV---DRFSMEEFKNGFLTFTQPL 480 (488)
Q Consensus 441 ~ll~~~~~~~~~~~~~a~~~~---~~~s~~~~~~~~~~~~~~~ 480 (488)
++.+ |++.++++.++-++.. .-|+...+++++++.|+++
T Consensus 426 ~La~-D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~m 467 (468)
T PF13844_consen 426 RLAT-DPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQM 467 (468)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHH
T ss_pred HHhC-CHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh
Confidence 9999 9999999999887655 4588899999999988764
No 112
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2e-09 Score=103.13 Aligned_cols=343 Identities=13% Similarity=0.136 Sum_probs=207.4
Q ss_pred ccccccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCC---hhHHHHHhhhhcccccCCCeeEEEEe
Q psy15555 48 SYNVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDAS---PSEIIKRAHQRFNIVLPDQVINFVYL 124 (488)
Q Consensus 48 ~~~~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~ 124 (488)
+.+++.||+|++.++..+. ....+..+.+.+.+. ..+|+.+..++... .+.+...+..++.
T Consensus 255 ~~~~rlRvGylS~dlr~Ha-vg~l~~~v~e~hDRd--kfEvfay~~g~~~~dal~~rI~a~~~~~~~------------- 318 (620)
T COG3914 255 RNGKRLRVGYLSSDLRSHA-VGFLLRWVFEYHDRD--KFEVFAYSLGPPHTDALQERISAAVEKWYP------------- 318 (620)
T ss_pred ccccceeEEEeccccccch-HHHHHHHHHHHhchh--heEEEEEecCCCCchhHHHHHHHhhhheec-------------
Confidence 3455789999998887665 445555566666554 57777765552222 2222222221111
Q ss_pred eccceeeccCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccc--hhhhhhhhCCCeeEE-EEeCCccchHHHHHH
Q psy15555 125 YRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAF--TYPLFSYIGGSKVAC-YIHYPTITKEMLTRV 201 (488)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~--~~~~~~~~~~~~~v~-~~h~p~~~~d~~~~~ 201 (488)
.+.... -.....++.-..||.++..++.. ..+++. .+..|+.+ ++.+|...
T Consensus 319 -------~~~~dd-----------~e~a~~I~~d~IdILvDl~g~T~d~r~~v~A-~RpAPiqvswlGy~aT~------- 372 (620)
T COG3914 319 -------IGRMDD-----------AEIANAIRTDGIDILVDLDGHTVDTRCQVFA-HRPAPIQVSWLGYPATT------- 372 (620)
T ss_pred -------cCCcCH-----------HHHHHHHHhcCCeEEEeccCceeccchhhhh-cCCCceEEeeccccccc-------
Confidence 111000 22445677788998886654443 223443 45566644 55554310
Q ss_pred HhhhhcccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHH-hccCCceEEEcCCCCchhh-h
Q psy15555 202 ARRVITHNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQL-WNCQLKTYKLYPPCDTEDL-K 279 (488)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-~~~~~k~~vi~~~~d~~~~-~ 279 (488)
...+..|+ -+|-.+.. +...+++.+. +..+ ..+.+.|-... .
T Consensus 373 -----g~p~~DY~--------------------------I~D~y~vP-p~ae~yysEkl~RLp----~cy~p~d~~~~v~ 416 (620)
T COG3914 373 -----GSPNMDYF--------------------------ISDPYTVP-PTAEEYYSEKLWRLP----QCYQPVDGFEPVT 416 (620)
T ss_pred -----CCCcceEE--------------------------eeCceecC-chHHHHHHHHHHhcc----cccCCCCCcccCC
Confidence 00000000 02444444 5555555543 2222 11222221110 1
Q ss_pred cc--C--CCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCC
Q psy15555 280 KI--T--HSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSL 355 (488)
Q Consensus 280 ~~--~--~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l 355 (488)
+. . -..+++-.++++++ ...|-...+++.+.++.+.. |+-.|.+-|.+++ ++....+++++++.|+
T Consensus 417 p~~sR~~lglp~~avVf~c~~--n~~K~~pev~~~wmqIL~~v-----P~Svl~L~~~~~~---~~~~~~l~~la~~~Gv 486 (620)
T COG3914 417 PPPSRAQLGLPEDAVVFCCFN--NYFKITPEVFALWMQILSAV-----PNSVLLLKAGGDD---AEINARLRDLAEREGV 486 (620)
T ss_pred CCcchhhcCCCCCeEEEEecC--CcccCCHHHHHHHHHHHHhC-----CCcEEEEecCCCc---HHHHHHHHHHHHHcCC
Confidence 11 1 12334545555555 45688888999999999888 8889999888754 3777899999999998
Q ss_pred C-CcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCC----CCccceeccCCCccccceecC
Q psy15555 356 E-NNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSG----GPKMDIVIEDPETCRNGFLAC 430 (488)
Q Consensus 356 ~-~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~----~~~~eiv~~~~~~~~~g~~~~ 430 (488)
. ++.+|.+..+.++..+.|..||+++-+ +.-+++.+.+||+.+|+|||+-... -+...++... +..-+++.
T Consensus 487 ~~eRL~f~p~~~~~~h~a~~~iADlvLDT-yPY~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~a---gi~e~vA~ 562 (620)
T COG3914 487 DSERLRFLPPAPNEDHRARYGIADLVLDT-YPYGGHTTASDALWMGVPVLTRVGEQFASRNGASIATNA---GIPELVAD 562 (620)
T ss_pred ChhheeecCCCCCHHHHHhhchhheeeec-ccCCCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhc---CCchhhcC
Confidence 5 689999999999999999999988864 4445577899999999999994321 1111344433 12234556
Q ss_pred CHHHHHHHHHHHHccCHHHHHHHHHHHHHHH---hhcCHHHHHHHHHHHHHHhhhh
Q psy15555 431 DEVEYAQTIKLILHLSQDTKTRISQNAVSSV---DRFSMEEFKNGFLTFTQPLFKV 483 (488)
Q Consensus 431 ~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~---~~~s~~~~~~~~~~~~~~~~~~ 483 (488)
+.++..+.-..+-. |...+++.+..-.+.. .-|+.+.+++++..+|..+.+.
T Consensus 563 s~~dYV~~av~~g~-dral~q~~r~~l~~~r~tspL~d~~~far~le~~y~~M~~~ 617 (620)
T COG3914 563 SRADYVEKAVAFGS-DRALRQQVRAELKRSRQTSPLFDPKAFARKLETLYWGMWSE 617 (620)
T ss_pred CHHHHHHHHHHhcc-cHHHHHhhHHHHHhccccCcccCHHHHHHHHHHHHHHHHHh
Confidence 78887777777766 7777776665544333 2589999999999999987653
No 113
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.28 E-value=1.7e-09 Score=99.79 Aligned_cols=320 Identities=15% Similarity=0.141 Sum_probs=179.8
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
+||+++... .+ +......|+++|++++++++++-+.+.. .. .++.+..|... ....-
T Consensus 2 ~ki~i~AGE---~S-GDllGa~LikaLk~~~~~~efvGvgG~~--m~---aeG~~sl~~~~--------------elsvm 58 (381)
T COG0763 2 LKIALSAGE---AS-GDLLGAGLIKALKARYPDVEFVGVGGEK--ME---AEGLESLFDME--------------ELSVM 58 (381)
T ss_pred ceEEEEecc---cc-hhhHHHHHHHHHHhhCCCeEEEEeccHH--HH---hccCccccCHH--------------HHHHh
Confidence 578776433 22 5567788999999999999988777652 11 11111111110 00001
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhhhhh--CC--CeeEEEEeCCccchHHHHHHHhhhhcc
Q psy15555 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYI--GG--SKVACYIHYPTITKEMLTRVARRVITH 208 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~~~~--~~--~~~v~~~h~p~~~~d~~~~~~~~~~~~ 208 (488)
+....+..+-..+.....+.+.+...+||+++.-..+.+.+.+.+.. .+ +|++.|+- |.+ |
T Consensus 59 Gf~EVL~~lp~llk~~~~~~~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~-PsV-W------------- 123 (381)
T COG0763 59 GFVEVLGRLPRLLKIRRELVRYILANKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVS-PSV-W------------- 123 (381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEEC-cce-e-------------
Confidence 11122222222233334445556678999776444445555555432 23 55555432 111 1
Q ss_pred cCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCC-CCchhhhccC-----
Q psy15555 209 NNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPP-CDTEDLKKIT----- 282 (488)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~-~d~~~~~~~~----- 282 (488)
-+.-.+ ...+.+.+|++++.=++..+.+.+.+. + ...++++ .|...+.+.+
T Consensus 124 ---------------AWr~~R-----a~~i~~~~D~lLailPFE~~~y~k~g~-~--~~yVGHpl~d~i~~~~~r~~ar~ 180 (381)
T COG0763 124 ---------------AWRPKR-----AVKIAKYVDHLLAILPFEPAFYDKFGL-P--CTYVGHPLADEIPLLPDREAARE 180 (381)
T ss_pred ---------------eechhh-----HHHHHHHhhHeeeecCCCHHHHHhcCC-C--eEEeCChhhhhccccccHHHHHH
Confidence 000001 112446679999999999999999544 3 6778877 4433222221
Q ss_pred --CCCCCCCeEEEEeeccCC--CCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHH-hcCCCC
Q psy15555 283 --HSKTDGPVKIISVAQFRP--EKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCK-HLSLEN 357 (488)
Q Consensus 283 --~~~~~~~~~i~~~g~~~~--~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~-~~~l~~ 357 (488)
....+.+...+..|+-.. .+-...+.+|+.++.++. |+.++++--..+ .+ +.+..... ......
T Consensus 181 ~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~-----~~~~~vlp~~~~-----~~-~~~~~~~~~~~~~~~ 249 (381)
T COG0763 181 KLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARY-----PDLKFVLPLVNA-----KY-RRIIEEALKWEVAGL 249 (381)
T ss_pred HhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhC-----CCceEEEecCcH-----HH-HHHHHHHhhccccCc
Confidence 112244556666664332 245567788899998888 899987754432 21 22322222 221111
Q ss_pred cEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCcc----------------ceeccCCC
Q psy15555 358 NVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKM----------------DIVIEDPE 421 (488)
Q Consensus 358 ~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~----------------eiv~~~~~ 421 (488)
.+ .+..++-.+.+..||+.+..| |.+.+|++.+|+|.|++--..+.. .++.+.
T Consensus 250 ~~----~~~~~~~~~a~~~aD~al~aS-----GT~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~-- 318 (381)
T COG0763 250 SL----ILIDGEKRKAFAAADAALAAS-----GTATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGR-- 318 (381)
T ss_pred eE----EecCchHHHHHHHhhHHHHhc-----cHHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCC--
Confidence 12 223367889999999877777 899999999999999854322210 122111
Q ss_pred ccccceec-----C-CHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q psy15555 422 TCRNGFLA-----C-DEVEYAQTIKLILHLSQDTKTRISQNAVSS 460 (488)
Q Consensus 422 ~~~~g~~~-----~-~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~ 460 (488)
.++. + .++.+++++..++. |.+.++++.+...+.
T Consensus 319 ----~ivPEliq~~~~pe~la~~l~~ll~-~~~~~~~~~~~~~~l 358 (381)
T COG0763 319 ----EIVPELIQEDCTPENLARALEELLL-NGDRREALKEKFREL 358 (381)
T ss_pred ----ccchHHHhhhcCHHHHHHHHHHHhc-ChHhHHHHHHHHHHH
Confidence 1111 1 58999999999999 886666666655443
No 114
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.27 E-value=1.6e-08 Score=97.32 Aligned_cols=267 Identities=13% Similarity=0.105 Sum_probs=150.3
Q ss_pred HHHHHHhhhcCCcEEEecCCccch--hhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHH
Q psy15555 149 ILGVEALLSFQPDIYIDTMGYAFT--YPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLF 226 (488)
Q Consensus 149 ~~~~~~l~~~~pDiii~~~~~~~~--~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (488)
..+.+++.+.+||+++.+..-... ..++....++|++ ++|.-..+.+ ...-.
T Consensus 83 ~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~-HveaG~rs~~-------------------------~~eE~ 136 (365)
T TIGR03568 83 IGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIA-HIHGGEVTEG-------------------------AIDES 136 (365)
T ss_pred HHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEE-EEECCccCCC-------------------------CchHH
Confidence 456678889999987755422222 2244446788876 2332110000 00001
Q ss_pred HHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCC-CCchhhhccC------CC--CC-CCCeEEEEee
Q psy15555 227 YYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPP-CDTEDLKKIT------HS--KT-DGPVKIISVA 296 (488)
Q Consensus 227 ~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~-~d~~~~~~~~------~~--~~-~~~~~i~~~g 296 (488)
.++ .+-+.++..++.++..++++.+.+-.+.++.++.|+ +|.-...... .. .. +++.+++.+-
T Consensus 137 ~r~-------~i~~la~l~f~~t~~~~~~L~~eg~~~~~i~~tG~~~iD~l~~~~~~~~~~~~~~lgl~~~~~~vlvt~H 209 (365)
T TIGR03568 137 IRH-------AITKLSHLHFVATEEYRQRVIQMGEDPDRVFNVGSPGLDNILSLDLLSKEELEEKLGIDLDKPYALVTFH 209 (365)
T ss_pred HHH-------HHHHHHhhccCCCHHHHHHHHHcCCCCCcEEEECCcHHHHHHhhhccCHHHHHHHhCCCCCCCEEEEEeC
Confidence 111 122345788889999999999876656688889886 4432111100 01 11 2244444444
Q ss_pred ccC--CCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHH
Q psy15555 297 QFR--PEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEF 374 (488)
Q Consensus 297 ~~~--~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~ 374 (488)
+-+ .....+.+.+.++.+.+.. .++ .++.+.+... +....+.+++...+ .+++.+.+.++..++..++
T Consensus 210 p~~~~~~~~~~~l~~li~~L~~~~-----~~~-~vi~P~~~p~-~~~i~~~i~~~~~~---~~~v~l~~~l~~~~~l~Ll 279 (365)
T TIGR03568 210 PVTLEKESAEEQIKELLKALDELN-----KNY-IFTYPNADAG-SRIINEAIEEYVNE---HPNFRLFKSLGQERYLSLL 279 (365)
T ss_pred CCcccccCchHHHHHHHHHHHHhc-----cCC-EEEEeCCCCC-chHHHHHHHHHhcC---CCCEEEECCCChHHHHHHH
Confidence 332 2232334444444444332 344 3344544211 11222344444221 3579999999999999999
Q ss_pred HhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC-CHHHHHHHHHHHHccCHHHHHHH
Q psy15555 375 SEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKLILHLSQDTKTRI 453 (488)
Q Consensus 375 ~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~~~~~~~~~~ 453 (488)
+.|+++|..|. -.+.||.++|+|+|+-. . +.|.++.+ .+.+.+. |++++.+++.+++ +++.+..+
T Consensus 280 ~~a~~vitdSS-----ggi~EA~~lg~Pvv~l~--~-R~e~~~~g----~nvl~vg~~~~~I~~a~~~~~--~~~~~~~~ 345 (365)
T TIGR03568 280 KNADAVIGNSS-----SGIIEAPSFGVPTINIG--T-RQKGRLRA----DSVIDVDPDKEEIVKAIEKLL--DPAFKKSL 345 (365)
T ss_pred HhCCEEEEcCh-----hHHHhhhhcCCCEEeec--C-Cchhhhhc----CeEEEeCCCHHHHHHHHHHHh--ChHHHHHH
Confidence 99999997652 23389999999999643 3 34666655 6667676 9999999999954 44333332
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHH
Q psy15555 454 SQNAVSSVDRFSMEEFKNGFLTF 476 (488)
Q Consensus 454 ~~~a~~~~~~~s~~~~~~~~~~~ 476 (488)
.. ....|.....++++.++
T Consensus 346 ~~----~~~pygdg~as~rI~~~ 364 (365)
T TIGR03568 346 KN----VKNPYGDGNSSERIIEI 364 (365)
T ss_pred hh----CCCCCCCChHHHHHHHh
Confidence 11 11446555666666554
No 115
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.26 E-value=2.1e-09 Score=102.34 Aligned_cols=224 Identities=14% Similarity=0.127 Sum_probs=124.8
Q ss_pred HHHHHHHhhhcCCcEEEecCCccchhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHH
Q psy15555 148 MILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFY 227 (488)
Q Consensus 148 ~~~~~~~l~~~~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (488)
.....+.+++.+||+|++-. .+... .+....++|++...|...... .+ .........
T Consensus 83 ~~~~~~~l~~~~pDlVIsD~-~~~~~-~aa~~~giP~i~i~~~~~~~~--------------------~~-~~~~~~~~~ 139 (318)
T PF13528_consen 83 IRREIRWLREFRPDLVISDF-YPLAA-LAARRAGIPVIVISNQYWFLH--------------------PN-FWLPWDQDF 139 (318)
T ss_pred HHHHHHHHHhcCCCEEEEcC-hHHHH-HHHHhcCCCEEEEEehHHccc--------------------cc-CCcchhhhH
Confidence 34455678889999888553 23332 333378999988776432100 00 000000111
Q ss_pred HHHHHHHHHHH-hcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCCCCCCCeEEEEeeccCCCCChHH
Q psy15555 228 YKVFALLYSHV-GKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKIISVAQFRPEKDHPL 306 (488)
Q Consensus 228 ~~~~~~~~~~~-~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ 306 (488)
...+..+.... ...++..+..+-... .....+...+++.......... ..+++.+++++|..... .
T Consensus 140 ~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~p~~~~~~~~~~---~~~~~~iLv~~gg~~~~----~ 206 (318)
T PF13528_consen 140 GRLIERYIDRYHFPPADRRLALSFYPP------LPPFFRVPFVGPIIRPEIRELP---PEDEPKILVYFGGGGPG----D 206 (318)
T ss_pred HHHHHHhhhhccCCcccceecCCcccc------ccccccccccCchhcccccccC---CCCCCEEEEEeCCCcHH----H
Confidence 12222222222 444555555543311 0001123334433332222111 12456789999976544 5
Q ss_pred HHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCC
Q psy15555 307 QLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWN 386 (488)
Q Consensus 307 ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~ 386 (488)
++++++.+ ++..++++|.+... -+ .++|.+.++ +..++.++++.||++|..+
T Consensus 207 ~~~~l~~~---------~~~~~~v~g~~~~~--------~~--------~~ni~~~~~-~~~~~~~~m~~ad~vIs~~-- 258 (318)
T PF13528_consen 207 LIEALKAL---------PDYQFIVFGPNAAD--------PR--------PGNIHVRPF-STPDFAELMAAADLVISKG-- 258 (318)
T ss_pred HHHHHHhC---------CCCeEEEEcCCccc--------cc--------CCCEEEeec-ChHHHHHHHHhCCEEEECC--
Confidence 56666654 67788888765210 00 468988886 3478999999999998754
Q ss_pred CcCCcc-HHHHHHcCCcEEEeCCCCCccc-----eeccCCCccccceecC----CHHHHHHHHHHH
Q psy15555 387 EHFGIG-IVECMAAGLIMIAHKSGGPKMD-----IVIEDPETCRNGFLAC----DEVEYAQTIKLI 442 (488)
Q Consensus 387 e~~g~~-~lEa~a~G~PvI~~~~~~~~~e-----iv~~~~~~~~~g~~~~----~~~~l~~~i~~l 442 (488)
|.+ +.|++++|+|+|+-+..+..|. .+++. +.|...+ +++.|.++|+++
T Consensus 259 ---G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~----G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 259 ---GYTTISEALALGKPALVIPRPGQDEQEYNARKLEEL----GLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred ---CHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHC----CCeEEcccccCCHHHHHHHHhcC
Confidence 555 9999999999999887654321 23333 4555543 678888877653
No 116
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=99.24 E-value=3.5e-08 Score=91.44 Aligned_cols=213 Identities=11% Similarity=0.099 Sum_probs=150.0
Q ss_pred cccCEEEEcChhHHHHHHHHhccCCceEEEcCC-CCchhhhc--cC-----C----CCCCCCeEEEEeeccCCC-CChHH
Q psy15555 240 KYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPP-CDTEDLKK--IT-----H----SKTDGPVKIISVAQFRPE-KDHPL 306 (488)
Q Consensus 240 ~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~-~d~~~~~~--~~-----~----~~~~~~~~i~~~g~~~~~-k~~~~ 306 (488)
.-+|.-++.++..++++.+.+..++++.+++|+ +|.-.... .. . ....++.+++.+-|-+.. ++...
T Consensus 144 ~~S~~hfapte~ar~nLl~EG~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~~~~~~iLvT~HRreN~~~~~~~ 223 (383)
T COG0381 144 HLSDLHFAPTEIARKNLLREGVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLDDKDKKYILVTAHRRENVGEPLEE 223 (383)
T ss_pred HhhhhhcCChHHHHHHHHHcCCCccceEEeCChHHHHHHHHHhhhccchhhHHhhhccccCcEEEEEcchhhcccccHHH
Confidence 446888999999999999987777789999998 44322210 00 0 111233555555555543 78899
Q ss_pred HHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHH-HhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCC
Q psy15555 307 QLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLC-KHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMW 385 (488)
Q Consensus 307 ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~-~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~ 385 (488)
+++++.++.+.+ +++. ++.+-|+. ..+++.. +.++-.++|.++..+...+...++..|-+.+.-|
T Consensus 224 i~~al~~i~~~~-----~~~~-viyp~H~~-------~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~iltDS- 289 (383)
T COG0381 224 ICEALREIAEEY-----PDVI-VIYPVHPR-------PRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFLILTDS- 289 (383)
T ss_pred HHHHHHHHHHhC-----CCce-EEEeCCCC-------hhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceEEEecC-
Confidence 999999999887 5665 46677764 2233333 4444456799999999999999999998777765
Q ss_pred CCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC-CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhc
Q psy15555 386 NEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRF 464 (488)
Q Consensus 386 ~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~ 464 (488)
|--.=||-..|+||++-....-+.|-++.+ .-.++. +.+.+.+++..+++ +++.+++|++.. ..|
T Consensus 290 ----GgiqEEAp~lg~Pvl~lR~~TERPE~v~ag-----t~~lvg~~~~~i~~~~~~ll~-~~~~~~~m~~~~----npY 355 (383)
T COG0381 290 ----GGIQEEAPSLGKPVLVLRDTTERPEGVEAG-----TNILVGTDEENILDAATELLE-DEEFYERMSNAK----NPY 355 (383)
T ss_pred ----CchhhhHHhcCCcEEeeccCCCCccceecC-----ceEEeCccHHHHHHHHHHHhh-ChHHHHHHhccc----CCC
Confidence 456679999999999977654444666554 344555 89999999999999 999999988765 445
Q ss_pred CHHHHHHHHHHHHHHh
Q psy15555 465 SMEEFKNGFLTFTQPL 480 (488)
Q Consensus 465 s~~~~~~~~~~~~~~~ 480 (488)
.-....+++.+++.+.
T Consensus 356 gdg~as~rIv~~l~~~ 371 (383)
T COG0381 356 GDGNASERIVEILLNY 371 (383)
T ss_pred cCcchHHHHHHHHHHH
Confidence 5555555555555543
No 117
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=99.21 E-value=4.7e-09 Score=99.39 Aligned_cols=309 Identities=14% Similarity=0.119 Sum_probs=180.0
Q ss_pred ceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeeccCchhHHHHHHHHHH
Q psy15555 68 GERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEASLYPYFTLLGQSIGS 147 (488)
Q Consensus 68 ~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (488)
|..+...|+++|++++|+.++.-..+..- .+ .+....+. ......-+....+..+...++.
T Consensus 10 GD~~ga~Li~~Lk~~~p~~~~~GvGG~~M--~~---~G~~~l~d--------------~~~lsvmG~~Evl~~l~~~~~~ 70 (373)
T PF02684_consen 10 GDLHGARLIRALKARDPDIEFYGVGGPRM--QA---AGVESLFD--------------MEELSVMGFVEVLKKLPKLKRL 70 (373)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEechHH--Hh---CCCceecc--------------hHHhhhccHHHHHHHHHHHHHH
Confidence 56788899999999999999888777621 10 11111111 1111111223334444444555
Q ss_pred HHHHHHHhhhcCCcEEEecCCccchhhhhhh--hCCCe--eEEEEeCCcc-chHHHHHHHhhhhcccCccccccCccchh
Q psy15555 148 MILGVEALLSFQPDIYIDTMGYAFTYPLFSY--IGGSK--VACYIHYPTI-TKEMLTRVARRVITHNNSQRVANNPILTS 222 (488)
Q Consensus 148 ~~~~~~~l~~~~pDiii~~~~~~~~~~~~~~--~~~~~--~v~~~h~p~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (488)
...+.+.+...+||+++.-..+.+.+.+++. ..+++ ++.|+- |.+ .|
T Consensus 71 ~~~~~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~-PqvWAW--------------------------- 122 (373)
T PF02684_consen 71 FRKLVERIKEEKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYIS-PQVWAW--------------------------- 122 (373)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEEC-Cceeee---------------------------
Confidence 5667777888999977655445555565543 34555 555443 332 11
Q ss_pred hhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCC-CCchhhhccC-----CCCCCCC-eEEEEe
Q psy15555 223 FKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPP-CDTEDLKKIT-----HSKTDGP-VKIISV 295 (488)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~-~d~~~~~~~~-----~~~~~~~-~~i~~~ 295 (488)
+... .+.+-+.+|.+++.=++..+.+.+.+ . ++..++|| .|........ ...+.++ .+.+..
T Consensus 123 -r~~R-------~~~i~~~~D~ll~ifPFE~~~y~~~g-~--~~~~VGHPl~d~~~~~~~~~~~~~~~l~~~~~iIaLLP 191 (373)
T PF02684_consen 123 -RPGR-------AKKIKKYVDHLLVIFPFEPEFYKKHG-V--PVTYVGHPLLDEVKPEPDRAEAREKLLDPDKPIIALLP 191 (373)
T ss_pred -CccH-------HHHHHHHHhheeECCcccHHHHhccC-C--CeEEECCcchhhhccCCCHHHHHHhcCCCCCcEEEEeC
Confidence 0000 11123456999999999999999854 3 47888888 4432211111 1122333 455555
Q ss_pred eccCC--CCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHH
Q psy15555 296 AQFRP--EKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKE 373 (488)
Q Consensus 296 g~~~~--~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~ 373 (488)
|+-.. .+....++++++.+.++. |++++++..... ...+.+++.....+....+... .++-.+.
T Consensus 192 GSR~~EI~rllP~~l~aa~~l~~~~-----p~l~fvvp~a~~-----~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~ 257 (373)
T PF02684_consen 192 GSRKSEIKRLLPIFLEAAKLLKKQR-----PDLQFVVPVAPE-----VHEELIEEILAEYPPDVSIVII----EGESYDA 257 (373)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhC-----CCeEEEEecCCH-----HHHHHHHHHHHhhCCCCeEEEc----CCchHHH
Confidence 64322 244577799999999988 899988765432 2223355555554433222222 2577789
Q ss_pred HHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCcc----------------ceeccCCCccccc-ee-cC-CHHH
Q psy15555 374 FSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKM----------------DIVIEDPETCRNG-FL-AC-DEVE 434 (488)
Q Consensus 374 ~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~----------------eiv~~~~~~~~~g-~~-~~-~~~~ 434 (488)
++.||+.+..| |.+.+|++.+|+|.|..--.+... .++.+. . ... ++ -+ +++.
T Consensus 258 m~~ad~al~~S-----GTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~--~-v~PEliQ~~~~~~~ 329 (373)
T PF02684_consen 258 MAAADAALAAS-----GTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGR--E-VVPELIQEDATPEN 329 (373)
T ss_pred HHhCcchhhcC-----CHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCC--C-cchhhhcccCCHHH
Confidence 99999888887 899999999999999843322110 122111 0 000 11 11 7999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHH
Q psy15555 435 YAQTIKLILHLSQDTKTRISQNA 457 (488)
Q Consensus 435 l~~~i~~ll~~~~~~~~~~~~~a 457 (488)
+++++..++. |++.++...+..
T Consensus 330 i~~~~~~ll~-~~~~~~~~~~~~ 351 (373)
T PF02684_consen 330 IAAELLELLE-NPEKRKKQKELF 351 (373)
T ss_pred HHHHHHHHhc-CHHHHHHHHHHH
Confidence 9999999998 777654444433
No 118
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=99.18 E-value=5e-09 Score=99.67 Aligned_cols=272 Identities=14% Similarity=0.100 Sum_probs=151.0
Q ss_pred HHHHHHhhhcCCcEEEecCCcc-ch-hhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHH
Q psy15555 149 ILGVEALLSFQPDIYIDTMGYA-FT-YPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLF 226 (488)
Q Consensus 149 ~~~~~~l~~~~pDiii~~~~~~-~~-~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (488)
..+.+.+.+.+||+|+....-. .+ ..++....++| +.+++.-..+.|. . .....-.
T Consensus 57 ~~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~ip-v~HieaGlRs~d~------------------~---~g~~de~ 114 (346)
T PF02350_consen 57 IELADVLEREKPDAVLVLGDRNEALAAALAAFYLNIP-VAHIEAGLRSGDR------------------T---EGMPDEI 114 (346)
T ss_dssp HHHHHHHHHHT-SEEEEETTSHHHHHHHHHHHHTT-E-EEEES-----S-T------------------T---SSTTHHH
T ss_pred HHHHHHHHhcCCCEEEEEcCCchHHHHHHHHHHhCCC-EEEecCCCCcccc------------------C---CCCchhh
Confidence 3455778889999776443222 22 23444467888 4555432110000 0 0111111
Q ss_pred HHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCC-CCchhhhccCC--C--------CCCCCeEEEEe
Q psy15555 227 YYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPP-CDTEDLKKITH--S--------KTDGPVKIISV 295 (488)
Q Consensus 227 ~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~-~d~~~~~~~~~--~--------~~~~~~~i~~~ 295 (488)
.+.. +-+.++.-++.++..++++.+.+..++++.+++|+ +|.-....... . ...++.+++..
T Consensus 115 ~R~~-------i~~la~lhf~~t~~~~~~L~~~G~~~~rI~~vG~~~~D~l~~~~~~~~~~~~~~~i~~~~~~~~iLvt~ 187 (346)
T PF02350_consen 115 NRHA-------IDKLAHLHFAPTEEARERLLQEGEPPERIFVVGNPGIDALLQNKEEIEEKYKNSGILQDAPKPYILVTL 187 (346)
T ss_dssp HHHH-------HHHH-SEEEESSHHHHHHHHHTT--GGGEEE---HHHHHHHHHHHTTCC-HHHHHHHHCTTSEEEEEE-
T ss_pred hhhh-------hhhhhhhhccCCHHHHHHHHhcCCCCCeEEEEChHHHHHHHHhHHHHhhhhhhHHHHhccCCCEEEEEe
Confidence 2222 33458999999999999999987777899999997 55322211110 0 12344445544
Q ss_pred eccCCC---CChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHH
Q psy15555 296 AQFRPE---KDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKK 372 (488)
Q Consensus 296 g~~~~~---k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~ 372 (488)
-+.+.. +....+.++++.+.+. +++.+++..... +.....+.+.++++ +++.+...+++.++..
T Consensus 188 H~~t~~~~~~~~~~i~~~l~~L~~~------~~~~vi~~~hn~----p~~~~~i~~~l~~~---~~v~~~~~l~~~~~l~ 254 (346)
T PF02350_consen 188 HPVTNEDNPERLEQILEALKALAER------QNVPVIFPLHNN----PRGSDIIIEKLKKY---DNVRLIEPLGYEEYLS 254 (346)
T ss_dssp S-CCCCTHH--HHHHHHHHHHHHHH------TTEEEEEE--S-----HHHHHHHHHHHTT----TTEEEE----HHHHHH
T ss_pred CcchhcCChHHHHHHHHHHHHHHhc------CCCcEEEEecCC----chHHHHHHHHhccc---CCEEEECCCCHHHHHH
Confidence 443332 3356777788887765 467766655321 13345666656554 3899999999999999
Q ss_pred HHHhCcEEEEcCCCCcCCccHH-HHHHcCCcEEEeCCCCCccceeccCCCccccceecC-CHHHHHHHHHHHHccCHHHH
Q psy15555 373 EFSEGLIGLHAMWNEHFGIGIV-ECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKLILHLSQDTK 450 (488)
Q Consensus 373 ~~~~ad~~v~~s~~e~~g~~~l-Ea~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~~~~~~~ 450 (488)
+++.|+++|+-| | .+. ||..+|+|+|.-...+.+.+-...+ .+-+ +. |.+++.+++.+++. +++.+
T Consensus 255 ll~~a~~vvgdS-----s-GI~eEa~~lg~P~v~iR~~geRqe~r~~~----~nvl-v~~~~~~I~~ai~~~l~-~~~~~ 322 (346)
T PF02350_consen 255 LLKNADLVVGDS-----S-GIQEEAPSLGKPVVNIRDSGERQEGRERG----SNVL-VGTDPEAIIQAIEKALS-DKDFY 322 (346)
T ss_dssp HHHHESEEEESS-----H-HHHHHGGGGT--EEECSSS-S-HHHHHTT----SEEE-ETSSHHHHHHHHHHHHH--HHHH
T ss_pred HHhcceEEEEcC-----c-cHHHHHHHhCCeEEEecCCCCCHHHHhhc----ceEE-eCCCHHHHHHHHHHHHh-ChHHH
Confidence 999999999876 5 677 9999999999987766766766665 4444 65 99999999999998 65555
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy15555 451 TRISQNAVSSVDRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 451 ~~~~~~a~~~~~~~s~~~~~~~~~~~~~ 478 (488)
.++... ..-|.-...++++.++++
T Consensus 323 ~~~~~~----~npYgdG~as~rI~~~Lk 346 (346)
T PF02350_consen 323 RKLKNR----PNPYGDGNASERIVEILK 346 (346)
T ss_dssp HHHHCS------TT-SS-HHHHHHHHHH
T ss_pred HhhccC----CCCCCCCcHHHHHHHhhC
Confidence 444321 145666666777766653
No 119
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.14 E-value=1.5e-07 Score=93.15 Aligned_cols=322 Identities=15% Similarity=0.125 Sum_probs=175.1
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
.||.++.. ..+ |......|+++|+++.|++++.-..+.. .. ..+.+..++. .....-
T Consensus 227 ~kIfI~AG---E~S-GDlhgA~Li~aLk~~~P~i~~~GvGG~~--M~---aaG~e~l~d~--------------~eLsVm 283 (608)
T PRK01021 227 TSCFISAG---EHS-GDTLGGNLLKEIKALYPDIHCFGVGGPQ--MR---AEGFHPLFNM--------------EEFQVS 283 (608)
T ss_pred CeEEEEec---ccc-HHHHHHHHHHHHHhcCCCcEEEEEccHH--HH---hCcCcccCCh--------------HHhhhh
Confidence 46766532 233 5677889999999999988877666641 11 0111111110 011111
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhhhh--hCCC--eeEEEEeCCcc-chHHHHHHHhhhhc
Q psy15555 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSY--IGGS--KVACYIHYPTI-TKEMLTRVARRVIT 207 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~~~--~~~~--~~v~~~h~p~~-~~d~~~~~~~~~~~ 207 (488)
+....+..+...++....+.+.+++.+||+++.-....+.+.+++. ..|+ |++.|+- |.+ .|
T Consensus 284 G~~EVL~~l~~l~~~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVs-PqVWAW------------ 350 (608)
T PRK01021 284 GFWEVLLALFKLWYRYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVC-PSIWAW------------ 350 (608)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEEC-ccceee------------
Confidence 2223334444445555667777888999977644434444555543 3453 7666543 221 11
Q ss_pred ccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCC-CCchhhhccC----
Q psy15555 208 HNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPP-CDTEDLKKIT---- 282 (488)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~-~d~~~~~~~~---- 282 (488)
.+.. . +.+-+.+|.+++.=+...+.+++. +. ++..+++| +|.-...+..
T Consensus 351 ---------------R~~R----i----kki~k~vD~ll~IfPFE~~~y~~~-gv--~v~yVGHPL~d~i~~~~~~~~~r 404 (608)
T PRK01021 351 ---------------RPKR----K----TILEKYLDLLLLILPFEQNLFKDS-PL--RTVYLGHPLVETISSFSPNLSWK 404 (608)
T ss_pred ---------------Ccch----H----HHHHHHhhhheecCccCHHHHHhc-CC--CeEEECCcHHhhcccCCCHHHHH
Confidence 0000 0 123345799999999999999984 43 47888888 4432211110
Q ss_pred --CCCC-CCCeEEEEeeccCCC--CChHHHHHHHH--HhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCC
Q psy15555 283 --HSKT-DGPVKIISVAQFRPE--KDHPLQLRAMY--QLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSL 355 (488)
Q Consensus 283 --~~~~-~~~~~i~~~g~~~~~--k~~~~ll~a~~--~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l 355 (488)
...+ +++.+-+..|+-..+ +....+++|++ .+. ++.++++. ..+. ...+.+++..++.++
T Consensus 405 ~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~--------~~l~fvvp-~a~~----~~~~~i~~~~~~~~~ 471 (608)
T PRK01021 405 EQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLA--------STHQLLVS-SANP----KYDHLILEVLQQEGC 471 (608)
T ss_pred HHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhc--------cCeEEEEe-cCch----hhHHHHHHHHhhcCC
Confidence 1112 334455666643222 33456666665 332 35677553 3321 223555665543331
Q ss_pred CCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCcc------------------ceec
Q psy15555 356 ENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKM------------------DIVI 417 (488)
Q Consensus 356 ~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~------------------eiv~ 417 (488)
-.+.+... ++-.++++.||+.+..| |.+.+|++.+|+|.|+.-..+... .++.
T Consensus 472 -~~~~ii~~---~~~~~~m~aaD~aLaaS-----GTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIa 542 (608)
T PRK01021 472 -LHSHIVPS---QFRYELMRECDCALAKC-----GTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIIL 542 (608)
T ss_pred -CCeEEecC---cchHHHHHhcCeeeecC-----CHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhc
Confidence 12333321 12368999999999888 999999999999999833221100 1111
Q ss_pred cCCCcccccee---cC-CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHh
Q psy15555 418 EDPETCRNGFL---AC-DEVEYAQTIKLILHLSQDTKTRISQNAVSSVD 462 (488)
Q Consensus 418 ~~~~~~~~g~~---~~-~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~ 462 (488)
+. +-.--++ .+ +++.+++++ +++. |++.++++.+.-.+..+
T Consensus 543 gr--~VvPEllqgQ~~~tpe~La~~l-~lL~-d~~~r~~~~~~l~~lr~ 587 (608)
T PRK01021 543 GS--TIFPEFIGGKKDFQPEEVAAAL-DILK-TSQSKEKQKDACRDLYQ 587 (608)
T ss_pred CC--CcchhhcCCcccCCHHHHHHHH-HHhc-CHHHHHHHHHHHHHHHH
Confidence 11 0000112 12 799999996 8888 88877777766554443
No 120
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.08 E-value=6.4e-10 Score=94.06 Aligned_cols=157 Identities=13% Similarity=0.002 Sum_probs=81.0
Q ss_pred CCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeeccCchhHHHHHHHH
Q psy15555 66 GGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEASLYPYFTLLGQSI 145 (488)
Q Consensus 66 gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (488)
||+++++..++++|.++| ++|.+++...+.... . ....+ +.+..++...... .+...
T Consensus 1 GG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~----------~-~~~~~-~~~~~~~~~~~~~--~~~~~------- 57 (160)
T PF13579_consen 1 GGIERYVRELARALAARG--HEVTVVTPQPDPEDD----------E-EEEDG-VRVHRLPLPRRPW--PLRLL------- 57 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT---EEEEEEE---GGG-----------S-EEETT-EEEEEE--S-SSS--GGGHC-------
T ss_pred CCHHHHHHHHHHHHHHCC--CEEEEEecCCCCccc----------c-cccCC-ceEEeccCCccch--hhhhH-------
Confidence 689999999999999995 555555544222110 0 01123 5665555433321 11111
Q ss_pred HHHHHHHHHh--hhcCCcEEEecCCccchhh-hhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchh
Q psy15555 146 GSMILGVEAL--LSFQPDIYIDTMGYAFTYP-LFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTS 222 (488)
Q Consensus 146 ~~~~~~~~~l--~~~~pDiii~~~~~~~~~~-~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (488)
.......+.+ +..+||+||.+........ +++...++|++..+|......
T Consensus 58 ~~~~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~--------------------------- 110 (160)
T PF13579_consen 58 RFLRRLRRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVHGTLFRR--------------------------- 110 (160)
T ss_dssp CHHHHHHHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-SS-T------------------------------
T ss_pred HHHHHHHHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEECCCchhh---------------------------
Confidence 1113345556 7889999997763322222 223356899999999532100
Q ss_pred hhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCC
Q psy15555 223 FKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPP 272 (488)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~ 272 (488)
......+.+..+++..++.+|.++++|+.+++.+.+.+..++|+.++|||
T Consensus 111 ~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~l~~~g~~~~ri~vipnG 160 (160)
T PF13579_consen 111 GSRWKRRLYRWLERRLLRRADRVIVVSEAMRRYLRRYGVPPDRIHVIPNG 160 (160)
T ss_dssp ---HHHHHHHHHHHHHHHH-SEEEESSHHHHHHHHHH---GGGEEE----
T ss_pred ccchhhHHHHHHHHHHHhcCCEEEECCHHHHHHHHHhCCCCCcEEEeCcC
Confidence 01222334456677889999999999999999999955555699999996
No 121
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.06 E-value=2.5e-07 Score=90.73 Aligned_cols=158 Identities=14% Similarity=0.118 Sum_probs=95.0
Q ss_pred CCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEE-EEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCC
Q psy15555 287 DGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLI-FIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNL 365 (488)
Q Consensus 287 ~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~-ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 365 (488)
++..+++..|++...+. . +++.+.....+. +.+++ .+|.+... +.+. .+++++.+.+++
T Consensus 224 ~~~~v~vs~Gs~~~~~~-~-~~~~~~~al~~~------~~~~i~~~g~~~~~------~~~~------~~~~~v~~~~~~ 283 (392)
T TIGR01426 224 GRPVVLISLGTVFNNQP-S-FYRTCVEAFRDL------DWHVVLSVGRGVDP------ADLG------ELPPNVEVRQWV 283 (392)
T ss_pred CCCEEEEecCccCCCCH-H-HHHHHHHHHhcC------CCeEEEEECCCCCh------hHhc------cCCCCeEEeCCC
Confidence 34567778888644332 2 333333332232 33444 45554321 1221 135789999999
Q ss_pred ChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCcc---ceeccCCCccccceecC----CHHHHHHH
Q psy15555 366 PYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC----DEVEYAQT 438 (488)
Q Consensus 366 ~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~----~~~~l~~~ 438 (488)
++. .++..||++|..+ +..++.||+++|+|+|+.+..+... +.+.+. +.|.... +.++++++
T Consensus 284 p~~---~ll~~~~~~I~hg----G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~----g~g~~l~~~~~~~~~l~~a 352 (392)
T TIGR01426 284 PQL---EILKKADAFITHG----GMNSTMEALFNGVPMVAVPQGADQPMTARRIAEL----GLGRHLPPEEVTAEKLREA 352 (392)
T ss_pred CHH---HHHhhCCEEEECC----CchHHHHHHHhCCCEEecCCcccHHHHHHHHHHC----CCEEEeccccCCHHHHHHH
Confidence 764 5789999988643 3357999999999999977643321 223333 4565543 67899999
Q ss_pred HHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q psy15555 439 IKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTF 476 (488)
Q Consensus 439 i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~ 476 (488)
+.++++ |++.++++.+-+.+....-..+..++.+.++
T Consensus 353 i~~~l~-~~~~~~~~~~l~~~~~~~~~~~~aa~~i~~~ 389 (392)
T TIGR01426 353 VLAVLS-DPRYAERLRKMRAEIREAGGARRAADEIEGF 389 (392)
T ss_pred HHHHhc-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 999998 8876666544443333444555555555443
No 122
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.01 E-value=2e-07 Score=91.85 Aligned_cols=92 Identities=15% Similarity=0.075 Sum_probs=65.1
Q ss_pred CCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCc---cceeccCCCccccceecC
Q psy15555 354 SLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPK---MDIVIEDPETCRNGFLAC 430 (488)
Q Consensus 354 ~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~---~eiv~~~~~~~~~g~~~~ 430 (488)
.++++|.+.+++|.. .++..||++|. .++..++.||+++|+|+|..+..+.. .+.+... +.|...+
T Consensus 285 ~~~~~v~~~~~~p~~---~ll~~~d~~I~----hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~----G~g~~l~ 353 (401)
T cd03784 285 DLPDNVRVVDFVPHD---WLLPRCAAVVH----HGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAEL----GAGPALD 353 (401)
T ss_pred CCCCceEEeCCCCHH---HHhhhhheeee----cCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHC----CCCCCCC
Confidence 346799999998654 56888999985 34457999999999999998775431 0233333 5666653
Q ss_pred ----CHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy15555 431 ----DEVEYAQTIKLILHLSQDTKTRISQNAV 458 (488)
Q Consensus 431 ----~~~~l~~~i~~ll~~~~~~~~~~~~~a~ 458 (488)
+.+++.+++.++++ ++ .+++..+.+.
T Consensus 354 ~~~~~~~~l~~al~~~l~-~~-~~~~~~~~~~ 383 (401)
T cd03784 354 PRELTAERLAAALRRLLD-PP-SRRRAAALLR 383 (401)
T ss_pred cccCCHHHHHHHHHHHhC-HH-HHHHHHHHHH
Confidence 68999999999997 53 4444444443
No 123
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=98.97 E-value=1.1e-06 Score=85.69 Aligned_cols=350 Identities=12% Similarity=0.017 Sum_probs=174.6
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHh--hhhccc--ccCC-CeeE--EEEee
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRA--HQRFNI--VLPD-QVIN--FVYLY 125 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~-~~v~--~~~~~ 125 (488)
|||++...+....-|-|-.+..++..|++..|+.++.+++..+..+.....+.+ .+.|.. .... .+.. +....
T Consensus 1 ~~i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v~S~~P~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 80 (426)
T PRK10017 1 MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPVSSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVKKVL 80 (426)
T ss_pred CeEEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEEEEecCccchhhhcccccccchhhhhhhhcccccccchhHHHHH
Confidence 788887655443447889999999999999999999999998765431110000 000000 0000 0000 00000
Q ss_pred ccceeeccCchhHHH-----HHHHHHHHHHHHHHhhhcCCcEEEecCCcc---------chhhhhhhhCCCeeEEEEeCC
Q psy15555 126 RRKFVEASLYPYFTL-----LGQSIGSMILGVEALLSFQPDIYIDTMGYA---------FTYPLFSYIGGSKVACYIHYP 191 (488)
Q Consensus 126 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~pDiii~~~~~~---------~~~~~~~~~~~~~~v~~~h~p 191 (488)
..++...-.+.+... ............+.++ +.|+++...+.. +.+..++...++|++++-+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqsi 158 (426)
T PRK10017 81 RRRYQHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLS--GYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHSV 158 (426)
T ss_pred HhhhhHHHHHhhhccccccccccchhhHHHHHHHHH--hCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCcC
Confidence 000000000000000 0000000111222222 478777553221 111223346688888865532
Q ss_pred ccchHHHHHHHhhhhcccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcC
Q psy15555 192 TITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYP 271 (488)
Q Consensus 192 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~ 271 (488)
. +... +....+.+.+++++|.|.+-.+...+.+.+++....++.+.+.
T Consensus 159 G-----------------------------Pf~~---~~~r~l~r~vl~~~~~ItvRD~~S~~~Lk~lGv~~~~v~~~aD 206 (426)
T PRK10017 159 G-----------------------------PFQD---EQFNQLANYVFGHCDALILRESVSLDLMKRSNITTAKVEHGVD 206 (426)
T ss_pred C-----------------------------CcCC---HHHHHHHHHHHhcCCEEEEccHHHHHHHHHhCCCccceEEecC
Confidence 1 1111 1223456678899999999999999999886544346666554
Q ss_pred CC-Cchhh--h--cc------CCCCCCCCeEEEEeeccCCC-C----C---h-HHHHHHHHHhHHhhhhhccCceEEEEE
Q psy15555 272 PC-DTEDL--K--KI------THSKTDGPVKIISVAQFRPE-K----D---H-PLQLRAMYQLRQIISEELWDNLKLIFI 331 (488)
Q Consensus 272 ~~-d~~~~--~--~~------~~~~~~~~~~i~~~g~~~~~-k----~---~-~~ll~a~~~l~~~~~~~~~~~~~l~iv 331 (488)
+. -.+.. . +. ......++.+-+.+..+.+. + . . ..+.+++..+.++ +.+++++
T Consensus 207 pAF~L~~~~~~~~~~~~~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~-------g~~Vv~l 279 (426)
T PRK10017 207 TAWLVDHHTEDFTASYAVQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDE-------GYQVIAL 279 (426)
T ss_pred hhhhCCccccccccchhhhhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHC-------CCeEEEE
Confidence 31 11110 0 00 00011223333334433311 1 1 1 2334445555432 5567777
Q ss_pred ecCC-----CCCcHHHHHHHHHHHHhcCCCCcEE-EecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEE
Q psy15555 332 GSTR-----NEEDEVCVKDMQDLCKHLSLENNVE-FKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIA 405 (488)
Q Consensus 332 G~~~-----~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~ 405 (488)
+.+. ..+|.....++.+.. .-+++++ +.+..+..|+..+++.||++|+.- =|..+=|++.|+|+|+
T Consensus 280 p~~~~~~~~~~dD~~~~~~l~~~~---~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~R-----lHa~I~a~~~gvP~i~ 351 (426)
T PRK10017 280 STCTGIDSYNKDDRMVALNLRQHV---SDPARYHVVMDELNDLEMGKILGACELTVGTR-----LHSAIISMNFGTPAIA 351 (426)
T ss_pred ecccCccCCCCchHHHHHHHHHhc---ccccceeEecCCCChHHHHHHHhhCCEEEEec-----chHHHHHHHcCCCEEE
Confidence 7542 222222223444433 3233333 344445679999999999988754 3689999999999999
Q ss_pred eCCCCCccceeccCCCccccceec--C--CHHHHHHHHHHHHccCHHHHHHHHH
Q psy15555 406 HKSGGPKMDIVIEDPETCRNGFLA--C--DEVEYAQTIKLILHLSQDTKTRISQ 455 (488)
Q Consensus 406 ~~~~~~~~eiv~~~~~~~~~g~~~--~--~~~~l~~~i~~ll~~~~~~~~~~~~ 455 (488)
-....=...+.++.+ ...+.. + +.+++.+.+.++++ +.+..++.-+
T Consensus 352 i~Y~~K~~~~~~~lg---~~~~~~~~~~l~~~~Li~~v~~~~~-~r~~~~~~l~ 401 (426)
T PRK10017 352 INYEHKSAGIMQQLG---LPEMAIDIRHLLDGSLQAMVADTLG-QLPALNARLA 401 (426)
T ss_pred eeehHHHHHHHHHcC---CccEEechhhCCHHHHHHHHHHHHh-CHHHHHHHHH
Confidence 665321123343320 112222 2 67899999999999 6655444433
No 124
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.95 E-value=8.6e-07 Score=82.98 Aligned_cols=291 Identities=14% Similarity=0.132 Sum_probs=156.9
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
|||++-.... .-.....+++++|.++ |++|++++.+.+.. .++.+. ++ +++..+.... .
T Consensus 1 MkIwiDi~~p----~hvhfFk~~I~eL~~~--GheV~it~R~~~~~-~~LL~~----yg-------~~y~~iG~~g---~ 59 (335)
T PF04007_consen 1 MKIWIDITHP----AHVHFFKNIIRELEKR--GHEVLITARDKDET-EELLDL----YG-------IDYIVIGKHG---D 59 (335)
T ss_pred CeEEEECCCc----hHHHHHHHHHHHHHhC--CCEEEEEEeccchH-HHHHHH----cC-------CCeEEEcCCC---C
Confidence 7777633221 1346778899999998 78888888875432 223322 22 3444333222 1
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCcc
Q psy15555 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQ 212 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~ 212 (488)
... ..+.....-.....+++++++||++++... +.. +.+++..|+|.+.+...+....
T Consensus 60 ~~~---~Kl~~~~~R~~~l~~~~~~~~pDv~is~~s-~~a-~~va~~lgiP~I~f~D~e~a~~----------------- 117 (335)
T PF04007_consen 60 SLY---GKLLESIERQYKLLKLIKKFKPDVAISFGS-PEA-ARVAFGLGIPSIVFNDTEHAIA----------------- 117 (335)
T ss_pred CHH---HHHHHHHHHHHHHHHHHHhhCCCEEEecCc-HHH-HHHHHHhCCCeEEEecCchhhc-----------------
Confidence 111 111112222334556778899999986642 222 3333477999998776542100
Q ss_pred ccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCch----hhhccCC----C
Q psy15555 213 RVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTE----DLKKITH----S 284 (488)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~----~~~~~~~----~ 284 (488)
..+..+..+|.+++..-.....+.+. |.. +-..-+||++.. .|.+.+. .
T Consensus 118 ---------------------~~~Lt~Pla~~i~~P~~~~~~~~~~~-G~~-~~i~~y~G~~E~ayl~~F~Pd~~vl~~l 174 (335)
T PF04007_consen 118 ---------------------QNRLTLPLADVIITPEAIPKEFLKRF-GAK-NQIRTYNGYKELAYLHPFKPDPEVLKEL 174 (335)
T ss_pred ---------------------cceeehhcCCeeECCcccCHHHHHhc-CCc-CCEEEECCeeeEEeecCCCCChhHHHHc
Confidence 01123456899998887666666664 433 222335665431 1222221 1
Q ss_pred CCCCCeEEEEeeccCC-----C-CChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCc
Q psy15555 285 KTDGPVKIISVAQFRP-----E-KDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENN 358 (488)
Q Consensus 285 ~~~~~~~i~~~g~~~~-----~-k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~ 358 (488)
..++.++++. |... . +....+-+.+..+.+.. +. ++++++.... +++.++.+
T Consensus 175 g~~~~~yIvv--R~~~~~A~y~~~~~~i~~~ii~~L~~~~------~~-vV~ipr~~~~---------~~~~~~~~---- 232 (335)
T PF04007_consen 175 GLDDEPYIVV--RPEAWKASYDNGKKSILPEIIEELEKYG------RN-VVIIPRYEDQ---------RELFEKYG---- 232 (335)
T ss_pred CCCCCCEEEE--EeccccCeeecCccchHHHHHHHHHhhC------ce-EEEecCCcch---------hhHHhccC----
Confidence 1123333332 2111 1 12233456666666553 33 7778876421 22333322
Q ss_pred EEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCC--ccceeccCCCcccccee--cCCHHH
Q psy15555 359 VEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGP--KMDIVIEDPETCRNGFL--ACDEVE 434 (488)
Q Consensus 359 v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~--~~eiv~~~~~~~~~g~~--~~~~~~ 434 (488)
+.+.... -+...++.-||++|+.+ |....||+..|+|.|.+-.+.. ..+... +.|.+ +.|+++
T Consensus 233 ~~i~~~~--vd~~~Ll~~a~l~Ig~g-----gTMa~EAA~LGtPaIs~~~g~~~~vd~~L~------~~Gll~~~~~~~e 299 (335)
T PF04007_consen 233 VIIPPEP--VDGLDLLYYADLVIGGG-----GTMAREAALLGTPAISCFPGKLLAVDKYLI------EKGLLYHSTDPDE 299 (335)
T ss_pred ccccCCC--CCHHHHHHhcCEEEeCC-----cHHHHHHHHhCCCEEEecCCcchhHHHHHH------HCCCeEecCCHHH
Confidence 3333332 25568999999999854 7788999999999999654321 113333 23555 459999
Q ss_pred HHHHHHHHHc
Q psy15555 435 YAQTIKLILH 444 (488)
Q Consensus 435 l~~~i~~ll~ 444 (488)
+.+.+.+...
T Consensus 300 i~~~v~~~~~ 309 (335)
T PF04007_consen 300 IVEYVRKNLG 309 (335)
T ss_pred HHHHHHHhhh
Confidence 8886665544
No 125
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=98.89 E-value=1.5e-06 Score=78.29 Aligned_cols=233 Identities=12% Similarity=0.133 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHhcccCEEEEcChhHHHHHH-HHhccCCceEEEcCCCCchhhhccCCCCCCCCeEEEEeeccCCCCChH
Q psy15555 227 YYKVFALLYSHVGKYSDIIMVNSSWTEEHVI-QLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKIISVAQFRPEKDHP 305 (488)
Q Consensus 227 ~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~-~~~~~~~k~~vi~~~~d~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~ 305 (488)
..+.+..+.+.+.++..++++ ++.+...+. +.++.+.+....|.-.++ ..........++....+-+|+....-|-+
T Consensus 84 k~rlfy~lRR~aq~rvg~v~a-trGD~~~~a~~~~~v~~~llyfpt~m~~-~l~~~~~~~~~~~~~tIlvGNSgd~SN~H 161 (322)
T PRK02797 84 KFRLFYPLRRLAQKRVGHVFA-TRGDLSYFAQRHPKVPGSLLYFPTRMDP-SLNTMANDRQRAGKMTILVGNSGDRSNRH 161 (322)
T ss_pred hHHHHHHHHHHHHhhcCeEEE-ecchHHHHHHhcCCCCccEEecCCcchh-hhccccccccCCCceEEEEeCCCCCcccH
Confidence 344555566778889999999 777777754 444555454233322332 22222211122334666678777665533
Q ss_pred HHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEe-cCCChHHHHHHHHhCcEEEEcC
Q psy15555 306 LQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFK-VNLPYEDMKKEFSEGLIGLHAM 384 (488)
Q Consensus 306 ~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~-g~~~~~el~~~~~~ad~~v~~s 384 (488)
++++..+++..+ .++++++-=+-| ..+++|.+++++..+++--.++++.+ ..+|.+|..++++.||+.++.-
T Consensus 162 --ie~L~~l~~~~~----~~v~ii~PlsYp-~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~ 234 (322)
T PRK02797 162 --IEALRALHQQFG----DNVKIIVPMGYP-ANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQCDLGYFIF 234 (322)
T ss_pred --HHHHHHHHHHhC----CCeEEEEECCcC-CCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEEee
Confidence 555555554442 577765533333 23568999999999988754666655 5689999999999999776654
Q ss_pred -CCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhh
Q psy15555 385 -WNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILHLSQDTKTRISQNAVSSVDR 463 (488)
Q Consensus 385 -~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~ 463 (488)
...+.| +++=.+..|+||+.+.......++.+.+ .-++++ .+.+...+. .+..+++...-++.+.
T Consensus 235 ~RQQgiG-nl~lLi~~G~~v~l~r~n~fwqdl~e~g-----v~Vlf~-~d~L~~~~v------~e~~rql~~~dk~~I~- 300 (322)
T PRK02797 235 ARQQGIG-TLCLLIQLGKPVVLSRDNPFWQDLTEQG-----LPVLFT-GDDLDEDIV------REAQRQLASVDKNIIA- 300 (322)
T ss_pred chhhHHh-HHHHHHHCCCcEEEecCCchHHHHHhCC-----CeEEec-CCcccHHHH------HHHHHHHHhhCcceee-
Confidence 455655 6777899999999986654554555443 223222 222221111 1123334444444444
Q ss_pred cCHHHHHHHHHHHHHHhhh
Q psy15555 464 FSMEEFKNGFLTFTQPLFK 482 (488)
Q Consensus 464 ~s~~~~~~~~~~~~~~~~~ 482 (488)
|+.++..+.|.++++....
T Consensus 301 Ff~pn~~~~W~~~l~~~~g 319 (322)
T PRK02797 301 FFSPNYLQGWRNALAIAAG 319 (322)
T ss_pred ecCHhHHHHHHHHHHHhhC
Confidence 9999999999999987654
No 126
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.87 E-value=4.9e-06 Score=83.44 Aligned_cols=139 Identities=13% Similarity=0.042 Sum_probs=88.0
Q ss_pred CeEEEEeeccCCC-C----ChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEec
Q psy15555 289 PVKIISVAQFRPE-K----DHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKV 363 (488)
Q Consensus 289 ~~~i~~~g~~~~~-k----~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g 363 (488)
..+++..|+.... + -...+++|++++ + .++++...+... + .++++||.+.+
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l---------~-~~viw~~~~~~~------~--------~~~p~Nv~i~~ 352 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKL---------P-YNVLWKYDGEVE------A--------INLPANVLTQK 352 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhC---------C-CeEEEEECCCcC------c--------ccCCCceEEec
Confidence 4677788876432 2 233444444443 3 466665543211 1 23478999999
Q ss_pred CCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCcc---ceeccCCCccccceecC----CHHHHH
Q psy15555 364 NLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC----DEVEYA 436 (488)
Q Consensus 364 ~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~----~~~~l~ 436 (488)
++|+.++..- ..+++||. .++..++.||+.+|+|+|+-+..+-.. ..++.. +.|...+ +.+++.
T Consensus 353 w~Pq~~lL~h-p~v~~fIt----HGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~----G~G~~l~~~~~t~~~l~ 423 (507)
T PHA03392 353 WFPQRAVLKH-KNVKAFVT----QGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVEL----GIGRALDTVTVSAAQLV 423 (507)
T ss_pred CCCHHHHhcC-CCCCEEEe----cCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHc----CcEEEeccCCcCHHHHH
Confidence 9988654311 45788885 345678999999999999977643211 223333 5676653 789999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHH
Q psy15555 437 QTIKLILHLSQDTKTRISQNAVSSV 461 (488)
Q Consensus 437 ~~i~~ll~~~~~~~~~~~~~a~~~~ 461 (488)
++|.++++ |++.+++..+-+....
T Consensus 424 ~ai~~vl~-~~~y~~~a~~ls~~~~ 447 (507)
T PHA03392 424 LAIVDVIE-NPKYRKNLKELRHLIR 447 (507)
T ss_pred HHHHHHhC-CHHHHHHHHHHHHHHH
Confidence 99999998 8776666555544443
No 127
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.77 E-value=4.4e-07 Score=83.46 Aligned_cols=217 Identities=14% Similarity=0.122 Sum_probs=145.2
Q ss_pred cCEEEEcChhH-HHHHHHHhccCCceEEEcCCCCchhhhccCCCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhh
Q psy15555 242 SDIIMVNSSWT-EEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISE 320 (488)
Q Consensus 242 ~d~ii~~s~~~-~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~ 320 (488)
.|.|++.++.. ++.+.+.++ ..+...++.++|.+.+.+..... .-.--+.++|+..+. ..+.++++...-.-
T Consensus 139 fd~v~~~g~~l~~~~yyq~~~-~~~~~~~~~a~d~~~~~~i~~da-~~~~dL~~ign~~pD-----r~e~~ke~~~~ps~ 211 (373)
T COG4641 139 FDNVLSFGGGLVANKYYQEGG-ARNCYYLPWAVDDSLFHPIPPDA-SYDVDLNLIGNPYPD-----RVEEIKEFFVEPSF 211 (373)
T ss_pred hhhhhhccchHHHHHHHHhhc-ccceeccCccCCchhcccCCccc-cceeeeEEecCCCcc-----HHHHHHHHhhccch
Confidence 35566667666 666665444 23577888889988887765322 223468888987665 22333333221000
Q ss_pred hccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCCh-HHHHHHHHhCcEEEEcCC---CCcC---CccH
Q psy15555 321 ELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPY-EDMKKEFSEGLIGLHAMW---NEHF---GIGI 393 (488)
Q Consensus 321 ~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~-~el~~~~~~ad~~v~~s~---~e~~---g~~~ 393 (488)
....+-++...|.+ +...+. ..-..+++.++|+.+. +.+...++..|+.+.-+. .++. .+-+
T Consensus 212 kl~v~rr~~~~g~~-------y~~~~~----~~~~~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~Rv 280 (373)
T COG4641 212 KLMVDRRFYVLGPR-------YPDDIW----GRTWEPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRV 280 (373)
T ss_pred hhhccceeeecCCc-------cchhhh----cccccchhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhH
Confidence 00012344444433 001111 1112457788888755 899999999997765442 2332 5779
Q ss_pred HHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-hhcCHHHHHHH
Q psy15555 394 VECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILHLSQDTKTRISQNAVSSV-DRFSMEEFKNG 472 (488)
Q Consensus 394 lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~ 472 (488)
.|+++||.|.|+....+.. ..+.++ ..-++..|.+++.+.++.++. .+++++++++.+.+.+ ..|+.+.-+..
T Consensus 281 Feiagc~~~liT~~~~~~e-~~f~pg----k~~iv~~d~kdl~~~~~yll~-h~~erkeiae~~ye~V~~~ht~~~r~~~ 354 (373)
T COG4641 281 FEIAGCGGFLITDYWKDLE-KFFKPG----KDIIVYQDSKDLKEKLKYLLN-HPDERKEIAECAYERVLARHTYEERIFK 354 (373)
T ss_pred HHHhhcCCccccccHHHHH-HhcCCc----hheEEecCHHHHHHHHHHHhc-CcchHHHHHHhhHHHHHHhccHHHHHHH
Confidence 9999999999998877764 777777 556667799999999999999 9999999999999998 88999988888
Q ss_pred HHHHHHHhhh
Q psy15555 473 FLTFTQPLFK 482 (488)
Q Consensus 473 ~~~~~~~~~~ 482 (488)
+.+.+..+..
T Consensus 355 ~~~~i~sI~~ 364 (373)
T COG4641 355 LLNEIASINI 364 (373)
T ss_pred HHHHHHHHHH
Confidence 8877776443
No 128
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=98.76 E-value=1.2e-05 Score=73.59 Aligned_cols=225 Identities=12% Similarity=0.125 Sum_probs=137.8
Q ss_pred HHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCC-ceEEEcCCCCchhhhccCCCCCCCCeEEEEeeccCCCCChHHH
Q psy15555 229 KVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQL-KTYKLYPPCDTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQ 307 (488)
Q Consensus 229 ~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~-k~~vi~~~~d~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~l 307 (488)
+.+..+.+.+.++...|++ ++.+...+.+.++... .....|..++...... ......+...-+.+|+....-|-+
T Consensus 125 rlfy~lRr~aq~rvg~V~a-t~GDl~~~~q~~~~~~~~~lyfPt~m~~~~~~~-~~~~~~~~~ltILvGNSgd~sNnH-- 200 (360)
T PF07429_consen 125 RLFYFLRRLAQKRVGHVFA-TRGDLAYFQQRYPRVPASLLYFPTRMDPALTLS-EKNKKNKGKLTILVGNSGDPSNNH-- 200 (360)
T ss_pred hHHHHHHHHHHhhcCeEEE-EcchHHHHHHHcCCCCceEEEcCCCCchhhhcc-ccccCCCCceEEEEcCCCCCCccH--
Confidence 3333455567778888876 6788889988886432 3323333355433222 221222345566678777666633
Q ss_pred HHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEe-cCCChHHHHHHHHhCcEEEEcCC-
Q psy15555 308 LRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFK-VNLPYEDMKKEFSEGLIGLHAMW- 385 (488)
Q Consensus 308 l~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~-g~~~~~el~~~~~~ad~~v~~s~- 385 (488)
++++..+++... .++++ +++-+-...+++|.+++.+..+++--.+++..+ .++|.+|..++++.||++++...
T Consensus 201 ieaL~~L~~~~~----~~~kI-ivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~R 275 (360)
T PF07429_consen 201 IEALEALKQQFG----DDVKI-IVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLSRCDLGIFNHNR 275 (360)
T ss_pred HHHHHHHHHhcC----CCeEE-EEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEeech
Confidence 666666665442 46774 445332223568999999999987545577654 68999999999999998888774
Q ss_pred CCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC----CHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q psy15555 386 NEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC----DEVEYAQTIKLILHLSQDTKTRISQNAVSSV 461 (488)
Q Consensus 386 ~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~----~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~ 461 (488)
..+.| +++=.+.+|+||+.+.......++.+.+ .-+++. |.+.+.++=+++...|+ +.
T Consensus 276 QQgiG-nI~lLl~~G~~v~L~~~np~~~~l~~~~-----ipVlf~~d~L~~~~v~ea~rql~~~dk-----------~~- 337 (360)
T PF07429_consen 276 QQGIG-NICLLLQLGKKVFLSRDNPFWQDLKEQG-----IPVLFYGDELDEALVREAQRQLANVDK-----------QQ- 337 (360)
T ss_pred hhhHh-HHHHHHHcCCeEEEecCChHHHHHHhCC-----CeEEeccccCCHHHHHHHHHHHhhCcc-----------cc-
Confidence 45555 7888999999999987755554444332 223332 44444444444433221 11
Q ss_pred hhcCHHHHHHHHHHHHHHh
Q psy15555 462 DRFSMEEFKNGFLTFTQPL 480 (488)
Q Consensus 462 ~~~s~~~~~~~~~~~~~~~ 480 (488)
-.|......+.|.+.+.-.
T Consensus 338 iaFf~pny~~~w~~~l~~~ 356 (360)
T PF07429_consen 338 IAFFAPNYLQGWRQALRLA 356 (360)
T ss_pred eeeeCCchHHHHHHHHHHH
Confidence 2366677777777776543
No 129
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=98.73 E-value=4.6e-06 Score=75.77 Aligned_cols=331 Identities=15% Similarity=0.162 Sum_probs=173.6
Q ss_pred ccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceee
Q psy15555 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVE 131 (488)
Q Consensus 52 ~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 131 (488)
.+||.|++.+...- |--+.+..++.+|.+.+.+.+|++.++.+....- +.+.. |+++.+|.-....
T Consensus 9 ~~Ri~~Yshd~~Gl-GHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F------------~~~~g-Vd~V~LPsl~k~~ 74 (400)
T COG4671 9 RPRILFYSHDLLGL-GHLRRALRIAHALVEDYLGFDILIISGGPPAGGF------------PGPAG-VDFVKLPSLIKGD 74 (400)
T ss_pred cceEEEEehhhccc-hHHHHHHHHHHHHhhcccCceEEEEeCCCccCCC------------CCccc-CceEecCceEecC
Confidence 46999877665422 3557888999999999899999999987543211 11122 5555555433222
Q ss_pred ccCchhHHH---HHHHHHHH-HHHHHHhhhcCCcEEE-ecCCccc---hhhhhhhh--CCCeeEEEEeCCccchHHHHHH
Q psy15555 132 ASLYPYFTL---LGQSIGSM-ILGVEALLSFQPDIYI-DTMGYAF---TYPLFSYI--GGSKVACYIHYPTITKEMLTRV 201 (488)
Q Consensus 132 ~~~~~~~~~---~~~~~~~~-~~~~~~l~~~~pDiii-~~~~~~~---~~~~~~~~--~~~~~v~~~h~p~~~~d~~~~~ 201 (488)
.+.+..... ........ -.+....+.++|||+| +..++.. +.|.+... .+.+.+.-.. |..+-.
T Consensus 75 ~G~~~~~d~~~~l~e~~~~Rs~lil~t~~~fkPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~lr------~i~D~p 148 (400)
T COG4671 75 NGEYGLVDLDGDLEETKKLRSQLILSTAETFKPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLGLR------SIRDIP 148 (400)
T ss_pred CCceeeeecCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeccccchhhhhhHHHHHHhhcCCcceeehH------hhhhch
Confidence 222211000 00001000 1144567889999765 5543331 12233222 2323333211 111111
Q ss_pred HhhhhcccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCC--ceEEEcCCCCchhh-
Q psy15555 202 ARRVITHNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQL--KTYKLYPPCDTEDL- 278 (488)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~--k~~vi~~~~d~~~~- 278 (488)
.... ....+.. .++.+-++.|.|++..+-.-..+.+.++... +..+.+-|+-....
T Consensus 149 ~~~~--------------~~w~~~~-------~~~~I~r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~vq~~~~ 207 (400)
T COG4671 149 QELE--------------ADWRRAE-------TVRLINRFYDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFVQRSLP 207 (400)
T ss_pred hhhc--------------cchhhhH-------HHHHHHHhheEEEEecCccccChhhcCCccHhhhhheeEeEEeeccCc
Confidence 1110 0001111 1222334569999998887777777676543 23344444321111
Q ss_pred -hccC-CCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceE---EEEEecCCCCCcHHHHHHHHHHHHhc
Q psy15555 279 -KKIT-HSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLK---LIFIGSTRNEEDEVCVKDMQDLCKHL 353 (488)
Q Consensus 279 -~~~~-~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~---l~ivG~~~~~~~~~~~~~l~~~~~~~ 353 (488)
.+.+ ...+++..+++.+|. ..-|.+++-.++.... .. ++++ +++.|-.-.. .-++++.+.+
T Consensus 208 ~~~~p~~~~pE~~~Ilvs~GG--G~dG~eLi~~~l~A~~-~l-----~~l~~~~~ivtGP~MP~---~~r~~l~~~A--- 273 (400)
T COG4671 208 HLPLPPHEAPEGFDILVSVGG--GADGAELIETALAAAQ-LL-----AGLNHKWLIVTGPFMPE---AQRQKLLASA--- 273 (400)
T ss_pred CCCCCCcCCCccceEEEecCC--ChhhHHHHHHHHHHhh-hC-----CCCCcceEEEeCCCCCH---HHHHHHHHhc---
Confidence 1111 112455677787774 3445444443333322 11 3333 4555543221 2234444444
Q ss_pred CCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccce-eccCCCcccccee---c
Q psy15555 354 SLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDI-VIEDPETCRNGFL---A 429 (488)
Q Consensus 354 ~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~ei-v~~~~~~~~~g~~---~ 429 (488)
+-.++|.+..+. .++..++..|+..|.-+. =+++.|=+++|||.+.-+.....+|. +... .-++-|++ .
T Consensus 274 ~~~p~i~I~~f~--~~~~~ll~gA~~vVSm~G----YNTvCeILs~~k~aLivPr~~p~eEQliRA~-Rl~~LGL~dvL~ 346 (400)
T COG4671 274 PKRPHISIFEFR--NDFESLLAGARLVVSMGG----YNTVCEILSFGKPALIVPRAAPREEQLIRAQ-RLEELGLVDVLL 346 (400)
T ss_pred ccCCCeEEEEhh--hhHHHHHHhhheeeeccc----chhhhHHHhCCCceEEeccCCCcHHHHHHHH-HHHhcCcceeeC
Confidence 324689999998 899999999998776432 24789999999999998876655432 2111 11122333 2
Q ss_pred C---CHHHHHHHHHHHHc
Q psy15555 430 C---DEVEYAQTIKLILH 444 (488)
Q Consensus 430 ~---~~~~l~~~i~~ll~ 444 (488)
+ +++.|+++|..+++
T Consensus 347 pe~lt~~~La~al~~~l~ 364 (400)
T COG4671 347 PENLTPQNLADALKAALA 364 (400)
T ss_pred cccCChHHHHHHHHhccc
Confidence 2 68899999998887
No 130
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.72 E-value=6.8e-06 Score=78.13 Aligned_cols=79 Identities=15% Similarity=0.047 Sum_probs=54.3
Q ss_pred CCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccc-----eeccCCCccccceecC
Q psy15555 356 ENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMD-----IVIEDPETCRNGFLAC 430 (488)
Q Consensus 356 ~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~e-----iv~~~~~~~~~g~~~~ 430 (488)
++++.+.++.+ +++.++|..||++|..+ +..++.|++++|+|+|..+..+..+. .+++. +.|...+
T Consensus 228 ~~~v~~~~~~~-~~~~~~l~~ad~vI~~~----G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~----g~~~~l~ 298 (321)
T TIGR00661 228 NENVEIRRITT-DNFKELIKNAELVITHG----GFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDL----GCGIALE 298 (321)
T ss_pred CCCEEEEECCh-HHHHHHHHhCCEEEECC----ChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHC----CCEEEcC
Confidence 46899988865 68999999999999854 23468999999999999887654321 23333 5666655
Q ss_pred --CHHHHHHHHHHHHc
Q psy15555 431 --DEVEYAQTIKLILH 444 (488)
Q Consensus 431 --~~~~l~~~i~~ll~ 444 (488)
+. ++.+++.+.++
T Consensus 299 ~~~~-~~~~~~~~~~~ 313 (321)
T TIGR00661 299 YKEL-RLLEAILDIRN 313 (321)
T ss_pred hhhH-HHHHHHHhccc
Confidence 33 44444444443
No 131
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.62 E-value=3.7e-06 Score=81.92 Aligned_cols=160 Identities=13% Similarity=0.101 Sum_probs=101.4
Q ss_pred CCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCC
Q psy15555 287 DGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLP 366 (488)
Q Consensus 287 ~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 366 (488)
+.+.+.+..|+.... ..+++.+....... +.++++...+ .. . ...++++|+...+++|
T Consensus 236 d~~~vyvslGt~~~~---~~l~~~~~~a~~~l------~~~vi~~~~~-~~----------~--~~~~~p~n~~v~~~~p 293 (406)
T COG1819 236 DRPIVYVSLGTVGNA---VELLAIVLEALADL------DVRVIVSLGG-AR----------D--TLVNVPDNVIVADYVP 293 (406)
T ss_pred CCCeEEEEcCCcccH---HHHHHHHHHHHhcC------CcEEEEeccc-cc----------c--ccccCCCceEEecCCC
Confidence 345566667766544 34444444444442 6677776643 11 1 2234578999999997
Q ss_pred hHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCc---cceeccCCCccccceecC----CHHHHHHHH
Q psy15555 367 YEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPK---MDIVIEDPETCRNGFLAC----DEVEYAQTI 439 (488)
Q Consensus 367 ~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~---~eiv~~~~~~~~~g~~~~----~~~~l~~~i 439 (488)
+.+ ++..||++|.. |+..++.||+.+|+|+|.-+.+.-. .+.+++. +.|.... +++.++++|
T Consensus 294 ~~~---~l~~ad~vI~h----GG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~----G~G~~l~~~~l~~~~l~~av 362 (406)
T COG1819 294 QLE---LLPRADAVIHH----GGAGTTSEALYAGVPLVVIPDGADQPLNAERVEEL----GAGIALPFEELTEERLRAAV 362 (406)
T ss_pred HHH---HhhhcCEEEec----CCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHc----CCceecCcccCCHHHHHHHH
Confidence 765 78999999974 4445789999999999997765221 1345555 6776643 899999999
Q ss_pred HHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhh
Q psy15555 440 KLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLFKVM 484 (488)
Q Consensus 440 ~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~~~ 484 (488)
.++++ |+..++...+......+.-. .+...+.+++...++
T Consensus 363 ~~vL~-~~~~~~~~~~~~~~~~~~~g----~~~~a~~le~~~~~~ 402 (406)
T COG1819 363 NEVLA-DDSYRRAAERLAEEFKEEDG----PAKAADLLEEFAREK 402 (406)
T ss_pred HHHhc-CHHHHHHHHHHHHHhhhccc----HHHHHHHHHHHHhcc
Confidence 99998 77666655544433334433 334444555544433
No 132
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=98.60 E-value=1e-05 Score=78.68 Aligned_cols=214 Identities=13% Similarity=0.102 Sum_probs=108.7
Q ss_pred HhcccCEEEEcChhHHHHHHHHhccCC-ceEEEcCCCCchhhhccCC---------CCCCCCeEEEEeeccCCCCCh---
Q psy15555 238 VGKYSDIIMVNSSWTEEHVIQLWNCQL-KTYKLYPPCDTEDLKKITH---------SKTDGPVKIISVAQFRPEKDH--- 304 (488)
Q Consensus 238 ~~~~~d~ii~~s~~~~~~~~~~~~~~~-k~~vi~~~~d~~~~~~~~~---------~~~~~~~~i~~~g~~~~~k~~--- 304 (488)
.....|.+++.|+..++.+.+.++.+. ++.+.+.|-....+..... ....++.+|+|+-+++.....
T Consensus 131 ~~~~~d~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~~~~~~~i~~~~~~~~~~k~ILyaPT~R~~~~~~~~ 210 (369)
T PF04464_consen 131 NYRNYDYFIVSSEFEKEIFKKAFGYPEDKILVTGYPRNDYLFNKSKENRNRIKKKLGIDKDKKVILYAPTWRDNSSNEYF 210 (369)
T ss_dssp HHTT-SEEEESSHHHHHHHHHHTT--GGGEEES--GGGHHHHHSTT-HHHHHHHHTT--SS-EEEEEE----GGG--GGS
T ss_pred hccCCcEEEECCHHHHHHHHHHhccCcceEEEeCCCeEhHHhccCHHHHHHHHHHhccCCCCcEEEEeeccccccccccc
Confidence 446779999999999999999887665 5666665532222222111 123456799999876644332
Q ss_pred ---H--HHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHh-cCCCCcEEEecCCChHHHHHHHHhCc
Q psy15555 305 ---P--LQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKH-LSLENNVEFKVNLPYEDMKKEFSEGL 378 (488)
Q Consensus 305 ---~--~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~-~~l~~~v~~~g~~~~~el~~~~~~ad 378 (488)
. .-++.+.. ... +++.+++-+ || .+...... ....++|.....- .++.+++..||
T Consensus 211 ~~~~~~~~~~~l~~-~~~------~~~~li~k~-Hp---------~~~~~~~~~~~~~~~i~~~~~~--~~~~~ll~~aD 271 (369)
T PF04464_consen 211 KFFFSDLDFEKLNF-LLK------NNYVLIIKP-HP---------NMKKKFKDFKEDNSNIIFVSDN--EDIYDLLAAAD 271 (369)
T ss_dssp S----TT-HHHHHH-HHT------TTEEEEE---SH---------HHHTT----TT-TTTEEE-TT---S-HHHHHHT-S
T ss_pred cccccccCHHHHHH-HhC------CCcEEEEEe-Cc---------hhhhchhhhhccCCcEEECCCC--CCHHHHHHhcC
Confidence 1 11333331 222 577777665 43 12222211 2234677777654 58999999999
Q ss_pred EEEEcCCCCcCCccHHHHHHcCCcEEEeCCCC--Cc--cceeccCCCccccceecCCHHHHHHHHHHHHccCHHHHHHHH
Q psy15555 379 IGLHAMWNEHFGIGIVECMAAGLIMIAHKSGG--PK--MDIVIEDPETCRNGFLACDEVEYAQTIKLILHLSQDTKTRIS 454 (488)
Q Consensus 379 ~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~--~~--~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~~~~~~~~~~~ 454 (488)
++|.- ++-.+.|++.+++|||...... .. .....+. .....|-++.|.++|.++|..++. +++...+..
T Consensus 272 iLITD-----ySSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~-~~~~pg~~~~~~~eL~~~i~~~~~-~~~~~~~~~ 344 (369)
T PF04464_consen 272 ILITD-----YSSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDY-EEDLPGPIVYNFEELIEAIENIIE-NPDEYKEKR 344 (369)
T ss_dssp EEEES-----S-THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-T-TTSSSS-EESSHHHHHHHHTTHHH-HHHHTHHHH
T ss_pred EEEEe-----chhHHHHHHHhCCCEEEEeccHHHHhhccCCCCch-HhhCCCceeCCHHHHHHHHHhhhh-CCHHHHHHH
Confidence 98863 3568999999999999754321 10 0111111 122457778899999999999887 555544433
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHH
Q psy15555 455 QNAVSSVDRFSMEEFKNGFLTFT 477 (488)
Q Consensus 455 ~~a~~~~~~~s~~~~~~~~~~~~ 477 (488)
+...+..-.|.-...++++.+.+
T Consensus 345 ~~~~~~~~~~~Dg~s~eri~~~I 367 (369)
T PF04464_consen 345 EKFRDKFFKYNDGNSSERIVNYI 367 (369)
T ss_dssp HHHHHHHSTT--S-HHHHHHHHH
T ss_pred HHHHHHhCCCCCchHHHHHHHHH
Confidence 33343333344445556655544
No 133
>PLN02448 UDP-glycosyltransferase family protein
Probab=98.60 E-value=0.00036 Score=69.56 Aligned_cols=360 Identities=12% Similarity=0.066 Sum_probs=167.0
Q ss_pred ccccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeecc--
Q psy15555 50 NVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRR-- 127 (488)
Q Consensus 50 ~~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 127 (488)
+.+.+|+++.-- .. |--.-...|++.|..++|++.|+++++..... ..... . .... +.+..++..
T Consensus 8 ~~~~hVvlvp~p--a~-GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~---~i~~~---~---~~~g-i~fv~lp~~~p 74 (459)
T PLN02448 8 TTSCHVVAMPYP--GR-GHINPMMNLCKLLASRKPDILITFVVTEEWLG---LIGSD---P---KPDN-IRFATIPNVIP 74 (459)
T ss_pred CCCcEEEEECCc--cc-ccHHHHHHHHHHHHcCCCCcEEEEEeCCchHh---Hhhcc---C---CCCC-EEEEECCCCCC
Confidence 445688876422 22 46677889999999874567777776653211 11110 0 0122 666655531
Q ss_pred ceeeccCchhHHHHHHHH-HHHHHHHHHhhhc--CCcEEEecCCccchhhhhhhhCCCeeEEEEeCCccchHHHHHHHhh
Q psy15555 128 KFVEASLYPYFTLLGQSI-GSMILGVEALLSF--QPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARR 204 (488)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~ 204 (488)
...... ......+.... .....+.+++++. ++|.|+.....+....++. ..++|.+.+.-.+.............
T Consensus 75 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~-~lgIP~v~f~~~~a~~~~~~~~~~~~ 152 (459)
T PLN02448 75 SELVRA-ADFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGN-RRNIPVASLWTMSATFFSVFYHFDLL 152 (459)
T ss_pred Cccccc-cCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHH-HhCCCeEEEEhHHHHHHHHHHHhhhh
Confidence 100001 01111111111 1122333444443 5687775543444444444 78999888776654211111111100
Q ss_pred h----hcccC----cc---ccc-cC-----ccchhh---hHHHHHHHHHHHHHHhcccCEEEEcChh-HHHHHHHHhcc-
Q psy15555 205 V----ITHNN----SQ---RVA-NN-----PILTSF---KLFYYKVFALLYSHVGKYSDIIMVNSSW-TEEHVIQLWNC- 262 (488)
Q Consensus 205 ~----~~~~~----~~---~~~-~~-----~~~~~~---~~~~~~~~~~~~~~~~~~~d~ii~~s~~-~~~~~~~~~~~- 262 (488)
. ..... .. .+. .. .+.... .......+..... ....++.|+++|-+ ....+.+.+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~-~~~~~~~vlvNTf~eLE~~~~~~l~~~ 231 (459)
T PLN02448 153 PQNGHFPVELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFS-WVPKAQYLLFTSFYELEAQAIDALKSK 231 (459)
T ss_pred hhccCCCCccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHh-hcccCCEEEEccHHHhhHHHHHHHHhh
Confidence 0 00000 00 000 00 000000 0000111111111 23567899999877 33332332211
Q ss_pred -CCceEEEcCCCCchh---------hh-------ccCCCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCc
Q psy15555 263 -QLKTYKLYPPCDTED---------LK-------KITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDN 325 (488)
Q Consensus 263 -~~k~~vi~~~~d~~~---------~~-------~~~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~ 325 (488)
+.++..|.+...... .. ........+..+.+..|+.... ..+.+-+.+..+.. .+
T Consensus 232 ~~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~-~~~~~~~~~~~l~~-------~~ 303 (459)
T PLN02448 232 FPFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSV-SSAQMDEIAAGLRD-------SG 303 (459)
T ss_pred cCCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccC-CHHHHHHHHHHHHh-------CC
Confidence 124566666432100 00 0111122344677777876432 22232233333322 25
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcE--EEEcCCCCcCCccHHHHHHcCCcE
Q psy15555 326 LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLI--GLHAMWNEHFGIGIVECMAAGLIM 403 (488)
Q Consensus 326 ~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~--~v~~s~~e~~g~~~lEa~a~G~Pv 403 (488)
..++++.+.+. ..+.+.. .+++.+.+++|+.++ ++..++ ||. .++..+++||+.+|+|+
T Consensus 304 ~~~lw~~~~~~-------~~~~~~~-----~~~~~v~~w~pQ~~i---L~h~~v~~fvt----HgG~nS~~eal~~GvP~ 364 (459)
T PLN02448 304 VRFLWVARGEA-------SRLKEIC-----GDMGLVVPWCDQLKV---LCHSSVGGFWT----HCGWNSTLEAVFAGVPM 364 (459)
T ss_pred CCEEEEEcCch-------hhHhHhc-----cCCEEEeccCCHHHH---hccCccceEEe----cCchhHHHHHHHcCCCE
Confidence 56776665421 1222222 246777899987765 445664 543 34456899999999999
Q ss_pred EEeCCCCC----ccceeccCCCccccceec---------CCHHHHHHHHHHHHccCH-HHHHHHHHHH
Q psy15555 404 IAHKSGGP----KMDIVIEDPETCRNGFLA---------CDEVEYAQTIKLILHLSQ-DTKTRISQNA 457 (488)
Q Consensus 404 I~~~~~~~----~~eiv~~~~~~~~~g~~~---------~~~~~l~~~i~~ll~~~~-~~~~~~~~~a 457 (488)
|+-+..+- ...+.+.. +.|+-+ -+.+++.+++.+++. ++ +.-+++.+++
T Consensus 365 l~~P~~~DQ~~na~~v~~~~----g~G~~~~~~~~~~~~~~~~~l~~av~~vl~-~~~~~~~~~r~~a 427 (459)
T PLN02448 365 LTFPLFWDQPLNSKLIVEDW----KIGWRVKREVGEETLVGREEIAELVKRFMD-LESEEGKEMRRRA 427 (459)
T ss_pred EeccccccchhhHHHHHHHh----CceEEEecccccCCcCcHHHHHHHHHHHhc-CCchhHHHHHHHH
Confidence 99776432 11122221 234433 167899999999997 53 3333444433
No 134
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.60 E-value=6.5e-05 Score=67.33 Aligned_cols=286 Identities=13% Similarity=0.121 Sum_probs=154.7
Q ss_pred ceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeeccCchhHHHHHHHHHH
Q psy15555 68 GERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEASLYPYFTLLGQSIGS 147 (488)
Q Consensus 68 ~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (488)
..+...+++.+|.++ |+++++++.+.+.. .+..+ .|+ +++..+..... ...-..+.....-
T Consensus 12 hvhfFk~lI~elekk--G~ev~iT~rd~~~v-~~LLd----~yg-------f~~~~Igk~g~-----~tl~~Kl~~~~eR 72 (346)
T COG1817 12 HVHFFKNLIWELEKK--GHEVLITCRDFGVV-TELLD----LYG-------FPYKSIGKHGG-----VTLKEKLLESAER 72 (346)
T ss_pred hhhHHHHHHHHHHhC--CeEEEEEEeecCcH-HHHHH----HhC-------CCeEeecccCC-----ccHHHHHHHHHHH
Confidence 346788999999999 78999999886542 22332 233 22222222111 0111011111112
Q ss_pred HHHHHHHhhhcCCcEEEecCCccchhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHH
Q psy15555 148 MILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFY 227 (488)
Q Consensus 148 ~~~~~~~l~~~~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (488)
.....++...++||+.+.-. .+.+ +-..+.-++|.+.....+.- ..
T Consensus 73 ~~~L~ki~~~~kpdv~i~~~-s~~l-~rvafgLg~psIi~~D~ehA----------------------------~~---- 118 (346)
T COG1817 73 VYKLSKIIAEFKPDVAIGKH-SPEL-PRVAFGLGIPSIIFVDNEHA----------------------------EA---- 118 (346)
T ss_pred HHHHHHHHhhcCCceEeecC-Ccch-hhHHhhcCCceEEecCChhH----------------------------HH----
Confidence 23366788899999988632 2222 33333567888876553320 00
Q ss_pred HHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCC----chhhhccC---C--CCCCCCeEEEE----
Q psy15555 228 YKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCD----TEDLKKIT---H--SKTDGPVKIIS---- 294 (488)
Q Consensus 228 ~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d----~~~~~~~~---~--~~~~~~~~i~~---- 294 (488)
..+.++..||.+++.+....+.+...+..+.++ +-+|++. ...|.+.+ + ....+...+++
T Consensus 119 ------qnkl~~Pla~~ii~P~~~~~~~~~~~G~~p~~i-~~~~giae~~~v~~f~pd~evlkeLgl~~~~~yIVmRpe~ 191 (346)
T COG1817 119 ------QNKLTLPLADVIITPEAIDEEELLDFGADPNKI-SGYNGIAELANVYGFVPDPEVLKELGLEEGETYIVMRPEP 191 (346)
T ss_pred ------HhhcchhhhhheecccccchHHHHHhCCCccce-ecccceeEEeecccCCCCHHHHHHcCCCCCCceEEEeecc
Confidence 122355678999999998888888877665432 3333321 11122221 0 11122333332
Q ss_pred --eeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHH
Q psy15555 295 --VAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKK 372 (488)
Q Consensus 295 --~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~ 372 (488)
+.-....++.+.+.++++.+.+. -.+++++. ++.++..+.. ++++..... -+-.+
T Consensus 192 ~~A~y~~g~~~~~~~~~li~~l~k~---------giV~ipr~---------~~~~eife~~---~n~i~pk~~--vD~l~ 248 (346)
T COG1817 192 WGAHYDNGDRGISVLPDLIKELKKY---------GIVLIPRE---------KEQAEIFEGY---RNIIIPKKA--VDTLS 248 (346)
T ss_pred ccceeeccccchhhHHHHHHHHHhC---------cEEEecCc---------hhHHHHHhhh---ccccCCccc--ccHHH
Confidence 11122345555567777776543 36777765 3344444432 123222222 34445
Q ss_pred HHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCC--CccceeccCCCccccceecC--CHHHHHHHHHHHHccCHH
Q psy15555 373 EFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGG--PKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILHLSQD 448 (488)
Q Consensus 373 ~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~--~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~~~~~ 448 (488)
++--|++.++.+ |.---||+..|+|.|+...|- ..++... +.|.++. |+.+..+...+.+. ++.
T Consensus 249 Llyya~lvig~g-----gTMarEaAlLGtpaIs~~pGkll~vdk~li------e~G~~~~s~~~~~~~~~a~~~l~-~~~ 316 (346)
T COG1817 249 LLYYATLVIGAG-----GTMAREAALLGTPAISCYPGKLLAVDKYLI------EKGLLYHSTDEIAIVEYAVRNLK-YRR 316 (346)
T ss_pred HHhhhheeecCC-----chHHHHHHHhCCceEEecCCccccccHHHH------hcCceeecCCHHHHHHHHHHHhh-chh
Confidence 777788777653 667789999999999987541 1122222 3466654 77776666666666 443
No 135
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=98.54 E-value=1.1e-05 Score=68.43 Aligned_cols=176 Identities=15% Similarity=0.090 Sum_probs=105.1
Q ss_pred cEEEEeccC--CCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeecccee
Q psy15555 53 KTVAFFHPY--CNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFV 130 (488)
Q Consensus 53 ~rI~~~~~~--~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 130 (488)
.||+++..- ....||-|+.+.+|+..|.++ ++++.++|........ . ..... +..++++.+..
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~--g~~v~Vyc~~~~~~~~-----~------~~y~g-v~l~~i~~~~~- 66 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSK--GIDVTVYCRSDYYPYK-----E------FEYNG-VRLVYIPAPKN- 66 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcC--CceEEEEEccCCCCCC-----C------cccCC-eEEEEeCCCCC-
Confidence 467777532 235789999999999999988 6777777765433211 0 00022 56666654432
Q ss_pred eccCchhHHHHHHHHHHHHHHHHHhh--hcCCcEEEecCC--ccchhhhhhhhC--CCeeEEEEeCCccchHHHHHHHhh
Q psy15555 131 EASLYPYFTLLGQSIGSMILGVEALL--SFQPDIYIDTMG--YAFTYPLFSYIG--GSKVACYIHYPTITKEMLTRVARR 204 (488)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~pDiii~~~~--~~~~~~~~~~~~--~~~~v~~~h~p~~~~d~~~~~~~~ 204 (488)
.... .+...+.++..+.+..+ +.+.||++.... .++..++.+..+ |.|+++..|... ++
T Consensus 67 --g~~~---si~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~~~~g~~v~vN~DGlE---------Wk- 131 (185)
T PF09314_consen 67 --GSAE---SIIYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFLRKLRKKGGKVVVNMDGLE---------WK- 131 (185)
T ss_pred --CchH---HHHHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHHHhhhhcCCcEEECCCcch---------hh-
Confidence 1111 11111111122222222 246777764432 345556665443 568888665432 11
Q ss_pred hhcccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCC
Q psy15555 205 VITHNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCD 274 (488)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d 274 (488)
...+.....+.+..-|+.+.+.+|.+|+-|+..++++.+.++ ..+..+|++|.|
T Consensus 132 ---------------R~KW~~~~k~~lk~~E~~avk~ad~lIaDs~~I~~y~~~~y~-~~~s~~IaYGad 185 (185)
T PF09314_consen 132 ---------------RAKWGRPAKKYLKFSEKLAVKYADRLIADSKGIQDYIKERYG-RKKSTFIAYGAD 185 (185)
T ss_pred ---------------hhhcCHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHHcC-CCCcEEecCCCC
Confidence 233344455566667888889999999999999999999998 346788988865
No 136
>PLN03007 UDP-glucosyltransferase family protein
Probab=98.43 E-value=0.0028 Score=63.56 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=64.5
Q ss_pred CCcEEEecCCChHHHHHHHHhCcE--EEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCc---cceecc-CCCcccccee-
Q psy15555 356 ENNVEFKVNLPYEDMKKEFSEGLI--GLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPK---MDIVIE-DPETCRNGFL- 428 (488)
Q Consensus 356 ~~~v~~~g~~~~~el~~~~~~ad~--~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~---~eiv~~-~~~~~~~g~~- 428 (488)
+.++++.+++|+.+ +++.+++ ||. .++-++++||+.+|+|+|+.+..+-. ...+.+ . .-+.|+-
T Consensus 344 ~~g~~v~~w~PQ~~---iL~h~~v~~fvt----H~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~--~~G~~~~~ 414 (482)
T PLN03007 344 GKGLIIRGWAPQVL---ILDHQATGGFVT----HCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVL--RTGVSVGA 414 (482)
T ss_pred cCCEEEecCCCHHH---HhccCccceeee----cCcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhh--cceeEecc
Confidence 45788899998764 5677764 543 33456899999999999997763221 011111 1 0011210
Q ss_pred -------cC--CHHHHHHHHHHHHccCH---H---HHHHHHHHHHHHH-hhcCHHHHHHHHHHHH
Q psy15555 429 -------AC--DEVEYAQTIKLILHLSQ---D---TKTRISQNAVSSV-DRFSMEEFKNGFLTFT 477 (488)
Q Consensus 429 -------~~--~~~~l~~~i~~ll~~~~---~---~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~ 477 (488)
.+ +.+++.+++++++. ++ + ..+++++.+++.+ +.-|..+-.+++.+.+
T Consensus 415 ~~~~~~~~~~~~~~~l~~av~~~m~-~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l~~~v~~~ 478 (482)
T PLN03007 415 KKLVKVKGDFISREKVEKAVREVIV-GEEAEERRLRAKKLAEMAKAAVEEGGSSFNDLNKFMEEL 478 (482)
T ss_pred ccccccccCcccHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 11 78899999999997 64 2 2223344444444 3344444444444443
No 137
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.37 E-value=4.5e-05 Score=72.19 Aligned_cols=134 Identities=15% Similarity=0.175 Sum_probs=77.2
Q ss_pred cccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCCCCCCCeEEEEeeccCCC--CChHHHHHHHHHhHHh
Q psy15555 240 KYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKIISVAQFRPE--KDHPLQLRAMYQLRQI 317 (488)
Q Consensus 240 ~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~~~~~~~~i~~~g~~~~~--k~~~~ll~a~~~l~~~ 317 (488)
+.+|.+++.=++..+.+ +. ++..++||+-.. .........+++.+.+..|+-..+ +....+++++.++.++
T Consensus 126 k~~d~vl~ifPFE~~~y----g~--~~~~VGhPl~d~-~~~~~~~~~~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~ 198 (347)
T PRK14089 126 KYCDFLASILPFEVQFY----QS--KATYVGHPLLDE-IKEFKKDLDKEGTIAFMPGSRKSEIKRLMPIFKELAKKLEGK 198 (347)
T ss_pred HHHhhhhccCCCCHHHh----CC--CCEEECCcHHHh-hhhhhhhcCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 44677777666555555 32 467889984322 111111122233444444432221 3345556777777643
Q ss_pred hhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHH
Q psy15555 318 ISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECM 397 (488)
Q Consensus 318 ~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~ 397 (488)
...+++.+... . +.+++...+. ..+.+.+ +..++|+.||+.+..| |.+.+|++
T Consensus 199 -------~~~~~i~~a~~------~-~~i~~~~~~~---~~~~~~~-----~~~~~m~~aDlal~~S-----GT~TLE~a 251 (347)
T PRK14089 199 -------EKILVVPSFFK------G-KDLKEIYGDI---SEFEISY-----DTHKALLEAEFAFICS-----GTATLEAA 251 (347)
T ss_pred -------CcEEEEeCCCc------H-HHHHHHHhcC---CCcEEec-----cHHHHHHhhhHHHhcC-----cHHHHHHH
Confidence 24566655431 1 4455544332 2344443 4568999999888877 88888999
Q ss_pred HcCCcEEEeC
Q psy15555 398 AAGLIMIAHK 407 (488)
Q Consensus 398 a~G~PvI~~~ 407 (488)
.+|+|.|..-
T Consensus 252 l~g~P~Vv~Y 261 (347)
T PRK14089 252 LIGTPFVLAY 261 (347)
T ss_pred HhCCCEEEEE
Confidence 9999999844
No 138
>KOG3742|consensus
Probab=98.35 E-value=8.7e-06 Score=75.83 Aligned_cols=238 Identities=12% Similarity=0.145 Sum_probs=146.2
Q ss_pred HHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCC-------------------------CCCC
Q psy15555 234 LYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHS-------------------------KTDG 288 (488)
Q Consensus 234 ~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~-------------------------~~~~ 288 (488)
+++.....|+.+.++|+-++-....+...+. -.+.|||.+..+|....+- .-++
T Consensus 245 ~ERaa~h~AhVFTTVSeITa~EAeHlLkRKP-D~itPNGLNV~KFsA~HEFQNLHA~~KekIndFVRGHF~GhlDFdLdk 323 (692)
T KOG3742|consen 245 LERAAAHTAHVFTTVSEITALEAEHLLKRKP-DVITPNGLNVKKFSAVHEFQNLHAQKKEKINDFVRGHFHGHLDFDLDK 323 (692)
T ss_pred HHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC-CeeCCCCcceeehhHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Confidence 4566777888889999887666666554332 3578999988776543210 1134
Q ss_pred CeEEEEeeccC-CCCChHHHHHHHHHhHHhhhhhccC--ceEEEEEecCCCCCcHH------HHHHHHHHHHh-------
Q psy15555 289 PVKIISVAQFR-PEKDHPLQLRAMYQLRQIISEELWD--NLKLIFIGSTRNEEDEV------CVKDMQDLCKH------- 352 (488)
Q Consensus 289 ~~~i~~~g~~~-~~k~~~~ll~a~~~l~~~~~~~~~~--~~~l~ivG~~~~~~~~~------~~~~l~~~~~~------- 352 (488)
..++..+||.+ ..||-+.+++++++|.-...-...| -+.+.|.+...+.-+.| -.+++.+.+.+
T Consensus 324 TlyfFiAGRYEf~NKGaDmFiEsLaRLN~~Lk~~~s~~TVVaFlImPaktN~FnVesLkgqAv~kqL~dtv~~Vk~~~Gk 403 (692)
T KOG3742|consen 324 TLYFFIAGRYEFSNKGADMFIESLARLNYLLKVSGSPKTVVAFLIMPAKTNSFNVESLKGQAVRKQLWDTVNEVKEKVGK 403 (692)
T ss_pred eEEEEEeeeeeeccCchHHHHHHHHHhHHHHeecCCCceEEEEEEeecCCCccchhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 56778888887 6799999999999986432111111 13455666543222111 11112111110
Q ss_pred --------cCCC--------------------------------------------------------Cc--EEEecC-C
Q psy15555 353 --------LSLE--------------------------------------------------------NN--VEFKVN-L 365 (488)
Q Consensus 353 --------~~l~--------------------------------------------------------~~--v~~~g~-~ 365 (488)
..++ ++ |+|++. +
T Consensus 404 rifd~~l~g~lPd~~ell~~~d~v~lKr~i~a~~r~slPPv~THNm~dDa~DpiL~~iRr~~LFN~~~DRVKvifHPEFL 483 (692)
T KOG3742|consen 404 RIFDHCLRGELPDLDELLDKDDLVLLKRCIFALQRQSLPPVCTHNMIDDANDPILSSIRRIGLFNSPSDRVKVIFHPEFL 483 (692)
T ss_pred HHHHHHhcccCCChHHhhChhHHHHHHHHHHHhccCCCCCceeccccccccchHHHHhHhhhcccCcccceEEEecHHHh
Confidence 0111 22 333321 1
Q ss_pred C------hHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCC---ccceeccCCCccccc-eecC-----
Q psy15555 366 P------YEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGP---KMDIVIEDPETCRNG-FLAC----- 430 (488)
Q Consensus 366 ~------~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~---~~eiv~~~~~~~~~g-~~~~----- 430 (488)
+ .-+..++.+.|+++|+||.+|++|.++.|.-.+|+|-|+++..|. .+|.+++. ++ .| ++++
T Consensus 484 ss~sPllglDYeeFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~-~a--yGIYIvDRRfks 560 (692)
T KOG3742|consen 484 SSTSPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDP-QA--YGIYIVDRRFKS 560 (692)
T ss_pred ccCCCCcCCCHHHHhccccccccccccCCCCCCchheEEeccccccccccchhhhHHHHhcCc-hh--ceEEEEecccCC
Confidence 1 137778999999999999999999999999999999999998553 34666654 22 34 3343
Q ss_pred ---CHHHHHHHHHHHHccCHHHHHHHHHHHH-HHH-hhcCHHHHHHHHHHHH
Q psy15555 431 ---DEVEYAQTIKLILHLSQDTKTRISQNAV-SSV-DRFSMEEFKNGFLTFT 477 (488)
Q Consensus 431 ---~~~~l~~~i~~ll~~~~~~~~~~~~~a~-~~~-~~~s~~~~~~~~~~~~ 477 (488)
+.++|++-+..+.. ...|+++-++.+ +.+ +-.+|..+...|.+.=
T Consensus 561 ~deSv~qL~~~m~~F~~--qsRRQRIiqRNrtErLSdLLDWk~lG~~Y~~aR 610 (692)
T KOG3742|consen 561 PDESVQQLASFMYEFCK--QSRRQRIIQRNRTERLSDLLDWKYLGRYYRKAR 610 (692)
T ss_pred hhhHHHHHHHHHHHHHH--HHHHHHHHHhcchhhHHHHHhHHHHhHHHHHHH
Confidence 45567777777664 344555555443 333 6778888777766543
No 139
>KOG4626|consensus
Probab=98.34 E-value=6.6e-05 Score=73.12 Aligned_cols=180 Identities=13% Similarity=0.151 Sum_probs=126.7
Q ss_pred CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCC-CcEEEec
Q psy15555 285 KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLE-NNVEFKV 363 (488)
Q Consensus 285 ~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~-~~v~~~g 363 (488)
.+++.+++..+..+ .|--..+++.|..+.++. |+-.|.+.--..-. | +.+++.+.+.|++ ++|.|.+
T Consensus 755 Lp~d~vvf~~FNqL--yKidP~~l~~W~~ILk~V-----PnS~LwllrfPa~g---e--~rf~ty~~~~Gl~p~riifs~ 822 (966)
T KOG4626|consen 755 LPEDAVVFCNFNQL--YKIDPSTLQMWANILKRV-----PNSVLWLLRFPAVG---E--QRFRTYAEQLGLEPDRIIFSP 822 (966)
T ss_pred CCCCeEEEeechhh--hcCCHHHHHHHHHHHHhC-----CcceeEEEeccccc---h--HHHHHHHHHhCCCccceeecc
Confidence 34566666666655 355568899999999988 77666554322111 1 6788889999985 6788888
Q ss_pred CCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCcc----ceeccCCCccccce-ecCCHHHHHHH
Q psy15555 364 NLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKM----DIVIEDPETCRNGF-LACDEVEYAQT 438 (488)
Q Consensus 364 ~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~----eiv~~~~~~~~~g~-~~~~~~~l~~~ 438 (488)
-...+|-.+-++.+|+.+-+....| -.+-.|.+.+|+|+|+-+...... ...... +.|- ++.+.+|..+.
T Consensus 823 va~k~eHvrr~~LaDv~LDTplcnG-hTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~----Gl~hliak~~eEY~~i 897 (966)
T KOG4626|consen 823 VAAKEEHVRRGQLADVCLDTPLCNG-HTTGMDVLWAGVPMVTMPGETLASRVAASLLTAL----GLGHLIAKNREEYVQI 897 (966)
T ss_pred ccchHHHHHhhhhhhhcccCcCcCC-cccchhhhccCCceeecccHHHHHHHHHHHHHHc----ccHHHHhhhHHHHHHH
Confidence 7788999999999998887655442 346689999999999965432210 122222 2343 35589999998
Q ss_pred HHHHHccCHHHHHHHHHHHHHHH---hhcCHHHHHHHHHHHHHHhhh
Q psy15555 439 IKLILHLSQDTKTRISQNAVSSV---DRFSMEEFKNGFLTFTQPLFK 482 (488)
Q Consensus 439 i~~ll~~~~~~~~~~~~~a~~~~---~~~s~~~~~~~~~~~~~~~~~ 482 (488)
-.++-. |.+..+++...-+..- .-|+..+++..+++.|.++-+
T Consensus 898 aV~Lat-d~~~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~MW~ 943 (966)
T KOG4626|consen 898 AVRLAT-DKEYLKKLRAKLRKARASSPLFDTKQYAKGLERLYLQMWK 943 (966)
T ss_pred HHHhhc-CHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHH
Confidence 889888 9999988887766443 558888888888888876544
No 140
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.34 E-value=1e-05 Score=71.22 Aligned_cols=144 Identities=16% Similarity=0.212 Sum_probs=87.2
Q ss_pred CCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEE-EecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCC
Q psy15555 288 GPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIF-IGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLP 366 (488)
Q Consensus 288 ~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~i-vG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 366 (488)
.+-+++..|..+ .|+ ..++.++.+.+. ++.+.| +|...+ . .+.+++.++. .+++.++-..
T Consensus 158 ~r~ilI~lGGsD-pk~--lt~kvl~~L~~~-------~~nl~iV~gs~~p----~-l~~l~k~~~~---~~~i~~~~~~- 218 (318)
T COG3980 158 KRDILITLGGSD-PKN--LTLKVLAELEQK-------NVNLHIVVGSSNP----T-LKNLRKRAEK---YPNINLYIDT- 218 (318)
T ss_pred hheEEEEccCCC-hhh--hHHHHHHHhhcc-------CeeEEEEecCCCc----c-hhHHHHHHhh---CCCeeeEecc-
Confidence 344677777654 466 557888877654 344444 454321 1 2666666665 4578887776
Q ss_pred hHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCc---cceeccCCCccccceecCCHHHHHHHHHHHH
Q psy15555 367 YEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPK---MDIVIEDPETCRNGFLACDEVEYAQTIKLIL 443 (488)
Q Consensus 367 ~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~---~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll 443 (488)
++|..++..||+.+.. .|.++.|++..|+|.++-....+. ..-++..+.....|+-. ........+.++.
T Consensus 219 -~dma~LMke~d~aI~A-----aGstlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~lg~~~~l~~~l-~~~~~~~~~~~i~ 291 (318)
T COG3980 219 -NDMAELMKEADLAISA-----AGSTLYEALLLGVPSLVLPLAENQIATAKEFEALGIIKQLGYHL-KDLAKDYEILQIQ 291 (318)
T ss_pred -hhHHHHHHhcchheec-----cchHHHHHHHhcCCceEEeeeccHHHHHHHHHhcCchhhccCCC-chHHHHHHHHHhh
Confidence 8999999999977753 388999999999994443222221 11122110000112222 3455666777788
Q ss_pred ccCHHHHHHHHHHHH
Q psy15555 444 HLSQDTKTRISQNAV 458 (488)
Q Consensus 444 ~~~~~~~~~~~~~a~ 458 (488)
+ |+..++.+....+
T Consensus 292 ~-d~~~rk~l~~~~~ 305 (318)
T COG3980 292 K-DYARRKNLSFGSK 305 (318)
T ss_pred h-CHHHhhhhhhccc
Confidence 7 8888877766544
No 141
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=98.23 E-value=0.0052 Score=58.07 Aligned_cols=329 Identities=12% Similarity=0.009 Sum_probs=166.5
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
||++++..+.....|-|-.+..+...|++..|+.++++.+..+.... + + +... ..+.....
T Consensus 1 m~~~L~g~~g~gN~Gdeail~all~~l~~~~~~~~~~~~~~~p~~i~----~------------p-~~~~--~~p~~~~~ 61 (385)
T COG2327 1 MKALLLGYYGFGNIGDEAILKALLDMLRRLNPDAKVLVMGRRPPVIV----D------------P-VFLS--ANPEGSAA 61 (385)
T ss_pred CeeEEEeeecCCCcccHHHHHHHHHHHHhhCcccceeeeecCCcccc----c------------c-eeec--CCcccCch
Confidence 56666544433334677888889999999999999999988752111 0 0 1111 11111112
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhh-hcCCcEEEecC------------Cccch--hhhhhhhCCCeeEEEEeCCccchHH
Q psy15555 133 SLYPYFTLLGQSIGSMILGVEALL-SFQPDIYIDTM------------GYAFT--YPLFSYIGGSKVACYIHYPTITKEM 197 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~-~~~pDiii~~~------------~~~~~--~~~~~~~~~~~~v~~~h~p~~~~d~ 197 (488)
..+++.+.+.+......-...++. -.+.|+++... .++.. +.++ ...++|++.+-|.-.
T Consensus 62 ~l~g~~k~v~R~~~k~~~~~~il~~l~~~d~~I~~Gg~l~~d~~~~~~~~~~~~~~~la-~l~~kp~~~~g~svG----- 135 (385)
T COG2327 62 GLNGRVKSVLRRRLKHPGLVSILSALGKADLIIIGGGGLLQDVTSSRSIIYYGGSILLA-RLAGKPTFFFGQSVG----- 135 (385)
T ss_pred hhhHHHHHHHHHhhccccHHHHHHHhhhCCEEEEcCcccccCccccceehhhHHHHHHH-HHcCCCEEEEeccCC-----
Confidence 222222221111110000001221 23688665331 11111 1122 257888888666321
Q ss_pred HHHHHhhhhcccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEc-CCCCch
Q psy15555 198 LTRVARRVITHNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLY-PPCDTE 276 (488)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~-~~~d~~ 276 (488)
.... ...+++.+..++.++.+++-.+...++++. .+.+ ..... +.+..+
T Consensus 136 --------------------P~~~-------~~s~~~~~~~~~~~s~i~vRD~~S~~llk~-~gi~--a~l~~D~Af~L~ 185 (385)
T COG2327 136 --------------------PLKH-------PLSRQLLNYVLGGCSAISVRDPVSYELLKQ-LGIN--ARLVTDPAFLLP 185 (385)
T ss_pred --------------------CccC-------HHHHHHHHHHhcCCcEEEEecHHhHHHHHH-cCCC--eEeecCcceecc
Confidence 1111 223345556788899999999999999996 4444 22222 112211
Q ss_pred hhhccCCC---CCCCCeEEEEeeccCCCCChHH-----HHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHH
Q psy15555 277 DLKKITHS---KTDGPVKIISVAQFRPEKDHPL-----QLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQD 348 (488)
Q Consensus 277 ~~~~~~~~---~~~~~~~i~~~g~~~~~k~~~~-----ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~ 348 (488)
...+.... ....+.+.+..-.+.+...-+. +-++...+....+ ...++.....+.. +...-...
T Consensus 186 ~~~~~~~~~~~~~~~~~~~i~lr~~~~~~t~~~~~~~~v~~~l~~~~~~~~----~~~~i~~~~~~~s----~d~~va~~ 257 (385)
T COG2327 186 ASSQNATASDVEAREKTVAITLRGLHPDNTAQRSILKYVNEALDLVERQVK----ALWRITLIDYGAS----DDLAVADA 257 (385)
T ss_pred cccccccccccccccceEEEEecccCCchhhhHHHHHHHHHHHHHHHHhhh----cceEEEeeecccc----chhHHHHH
Confidence 11111111 1123334444444444322222 2333333312221 3445544444432 22233344
Q ss_pred HHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCcccccee
Q psy15555 349 LCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFL 428 (488)
Q Consensus 349 ~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~ 428 (488)
.+....-.+++.+......+++...+++||++|+.- =|+++=|++.|+|+|+-.+..-.+.+.++.+ -.++.
T Consensus 258 ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R-----~HsaI~al~~g~p~i~i~Y~~K~~~l~~~~g---l~~~~ 329 (385)
T COG2327 258 IAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMR-----LHSAIMALAFGVPAIAIAYDPKVRGLMQDLG---LPGFA 329 (385)
T ss_pred HHhhcCCccceEeecchHHHHHHHHhccCceEEeeh-----hHHHHHHHhcCCCeEEEeecHHHHHHHHHcC---CCccc
Confidence 444433246777776644478888999999888643 2689999999999999766433334444441 12233
Q ss_pred cC----CHHHHHHHHHHHHccCHHHHHH
Q psy15555 429 AC----DEVEYAQTIKLILHLSQDTKTR 452 (488)
Q Consensus 429 ~~----~~~~l~~~i~~ll~~~~~~~~~ 452 (488)
.+ |.+.+.+...+.+...++.+++
T Consensus 330 ~~i~~~~~~~l~~~~~e~~~~~~~~~~~ 357 (385)
T COG2327 330 IDIDPLDAEILSAVVLERLTKLDELRER 357 (385)
T ss_pred ccCCCCchHHHHHHHHHHHhccHHHHhh
Confidence 22 7788888888877745554444
No 142
>PLN02764 glycosyltransferase family protein
Probab=98.21 E-value=0.0039 Score=61.37 Aligned_cols=223 Identities=9% Similarity=-0.007 Sum_probs=116.9
Q ss_pred hcccCEEEEcChhH-HHHHHHHhcc--CCceEEEcCCCCch-h-------hhccCCCCCCCCeEEEEeeccCCCCChHHH
Q psy15555 239 GKYSDIIMVNSSWT-EEHVIQLWNC--QLKTYKLYPPCDTE-D-------LKKITHSKTDGPVKIISVAQFRPEKDHPLQ 307 (488)
Q Consensus 239 ~~~~d~ii~~s~~~-~~~~~~~~~~--~~k~~vi~~~~d~~-~-------~~~~~~~~~~~~~~i~~~g~~~~~k~~~~l 307 (488)
...++.|+++|=.. ...+.+.+.. ..++..|++-+... . .-..-...+++..+.+..|+...- ..+.+
T Consensus 197 ~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPL~~~~~~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~-~~~q~ 275 (453)
T PLN02764 197 LMNSDVIAIRTAREIEGNFCDYIEKHCRKKVLLTGPVFPEPDKTRELEERWVKWLSGYEPDSVVFCALGSQVIL-EKDQF 275 (453)
T ss_pred hccCCEEEEeccHHhhHHHHHHHHhhcCCcEEEeccCccCccccccchhHHHHHHhCCCCCceEEEeecccccC-CHHHH
Confidence 56788999988443 2222332311 12567776653111 0 001112233456677888887432 33455
Q ss_pred HHHHHHhHHhhhhhccCceEEEEEec-CCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCC
Q psy15555 308 LRAMYQLRQIISEELWDNLKLIFIGS-TRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWN 386 (488)
Q Consensus 308 l~a~~~l~~~~~~~~~~~~~l~ivG~-~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~ 386 (488)
-+....|.... .++..++-.. +.........+.+++..+. ..+...+++|+.++..- ..+++||.
T Consensus 276 ~ela~gL~~s~-----~pflwv~r~~~~~~~~~~~lp~~f~~r~~g----rG~v~~~W~PQ~~vL~h-~~v~~Fvt---- 341 (453)
T PLN02764 276 QELCLGMELTG-----SPFLVAVKPPRGSSTIQEALPEGFEERVKG----RGVVWGGWVQQPLILSH-PSVGCFVS---- 341 (453)
T ss_pred HHHHHHHHhCC-----CCeEEEEeCCCCCcchhhhCCcchHhhhcc----CCcEEeCCCCHHHHhcC-cccCeEEe----
Confidence 55555554433 3444444321 1100000111223333322 34677899988775432 22344654
Q ss_pred CcCCccHHHHHHcCCcEEEeCCCCCc---ccee-ccCCCccccceec------C-CHHHHHHHHHHHHccCH-HHHHHHH
Q psy15555 387 EHFGIGIVECMAAGLIMIAHKSGGPK---MDIV-IEDPETCRNGFLA------C-DEVEYAQTIKLILHLSQ-DTKTRIS 454 (488)
Q Consensus 387 e~~g~~~lEa~a~G~PvI~~~~~~~~---~eiv-~~~~~~~~~g~~~------~-~~~~l~~~i~~ll~~~~-~~~~~~~ 454 (488)
.++.++++||+.+|+|+|+-+..+-. ...+ +.. +.|+.+ . +.+++.++++++++ ++ +..+++.
T Consensus 342 H~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~----g~gv~~~~~~~~~~~~e~i~~av~~vm~-~~~~~g~~~r 416 (453)
T PLN02764 342 HCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDEL----KVSVEVAREETGWFSKESLRDAINSVMK-RDSEIGNLVK 416 (453)
T ss_pred cCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHh----ceEEEeccccCCccCHHHHHHHHHHHhc-CCchhHHHHH
Confidence 34456899999999999997764321 0222 223 445442 1 77899999999997 54 4455565
Q ss_pred HHHHHH---H-hhcCHHHHHHHHHHHHHHhh
Q psy15555 455 QNAVSS---V-DRFSMEEFKNGFLTFTQPLF 481 (488)
Q Consensus 455 ~~a~~~---~-~~~s~~~~~~~~~~~~~~~~ 481 (488)
+++++. + +.-|.....+++.+.+.+..
T Consensus 417 ~~a~~~~~~~~~~GSS~~~l~~lv~~~~~~~ 447 (453)
T PLN02764 417 KNHTKWRETLASPGLLTGYVDNFIESLQDLV 447 (453)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 555433 3 44555555555555555443
No 143
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=98.17 E-value=0.00045 Score=66.57 Aligned_cols=103 Identities=5% Similarity=-0.029 Sum_probs=64.2
Q ss_pred CCeEEEEeeccCCCCChH--HHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCC
Q psy15555 288 GPVKIISVAQFRPEKDHP--LQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNL 365 (488)
Q Consensus 288 ~~~~i~~~g~~~~~k~~~--~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 365 (488)
++.+++..|...+.|... ...+..+.+.+ .+.++++.|+..+. +. +..++..+...-...+.+.|..
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~-------~~~~vvl~ggp~e~---e~-~~~~~i~~~~~~~~~~~l~g~~ 251 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQA-------RGYEVVLTSGPDKD---DL-ACVNEIAQGCQTPPVTALAGKT 251 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHH-------CCCeEEEEcCCChH---HH-HHHHHHHHhcCCCccccccCCC
Confidence 456777777766677754 45555555543 35677888753211 11 2223333332222345678888
Q ss_pred ChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEe
Q psy15555 366 PYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAH 406 (488)
Q Consensus 366 ~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~ 406 (488)
+-.|+..+++.||++|+.- +++ +==|.|.|+|+|+-
T Consensus 252 sL~el~ali~~a~l~v~nD---SGp--~HlAaA~g~P~v~l 287 (352)
T PRK10422 252 TFPELGALIDHAQLFIGVD---SAP--AHIAAAVNTPLICL 287 (352)
T ss_pred CHHHHHHHHHhCCEEEecC---CHH--HHHHHHcCCCEEEE
Confidence 8899999999999999753 333 33367889999984
No 144
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.16 E-value=0.00022 Score=68.00 Aligned_cols=101 Identities=17% Similarity=0.223 Sum_probs=62.6
Q ss_pred CCeEEEEee-ccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCC
Q psy15555 288 GPVKIISVA-QFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLP 366 (488)
Q Consensus 288 ~~~~i~~~g-~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 366 (488)
++.+++..| +....|... .+-++++.+...+ ...++++.|+.. +. +..+++.+..+ +.+.+.|..+
T Consensus 175 ~~~i~i~pg~s~~~~K~wp--~e~~~~l~~~l~~---~~~~Vvl~g~~~---e~---e~~~~i~~~~~--~~~~l~~k~s 241 (334)
T COG0859 175 RPYIVINPGASRGSAKRWP--LEHYAELAELLIA---KGYQVVLFGGPD---EE---ERAEEIAKGLP--NAVILAGKTS 241 (334)
T ss_pred CCeEEEeccccccccCCCC--HHHHHHHHHHHHH---CCCEEEEecChH---HH---HHHHHHHHhcC--CccccCCCCC
Confidence 356677777 444777754 3344443332211 236788888662 22 33444444432 2333888889
Q ss_pred hHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEe
Q psy15555 367 YEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAH 406 (488)
Q Consensus 367 ~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~ 406 (488)
-.|+..+++.||++|++. ++ .+==|.|.|+|+|+-
T Consensus 242 L~e~~~li~~a~l~I~~D---Sg--~~HlAaA~~~P~I~i 276 (334)
T COG0859 242 LEELAALIAGADLVIGND---SG--PMHLAAALGTPTIAL 276 (334)
T ss_pred HHHHHHHHhcCCEEEccC---Ch--HHHHHHHcCCCEEEE
Confidence 999999999999988764 22 233478889999994
No 145
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.09 E-value=0.0001 Score=60.51 Aligned_cols=136 Identities=16% Similarity=0.122 Sum_probs=77.3
Q ss_pred EEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeecc
Q psy15555 54 TVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEAS 133 (488)
Q Consensus 54 rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 133 (488)
||+++.... +....+++++|.++ |++|.+.+...+... .... .+ +.+..++.... .
T Consensus 1 KIl~i~~~~------~~~~~~~~~~L~~~--g~~V~ii~~~~~~~~--~~~~----------~~-i~~~~~~~~~k---~ 56 (139)
T PF13477_consen 1 KILLIGNTP------STFIYNLAKELKKR--GYDVHIITPRNDYEK--YEII----------EG-IKVIRLPSPRK---S 56 (139)
T ss_pred CEEEEecCc------HHHHHHHHHHHHHC--CCEEEEEEcCCCchh--hhHh----------CC-eEEEEecCCCC---c
Confidence 567765442 34678999999998 555555555433211 1111 22 55555543211 1
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCcc-chhh-hhhhhCC-CeeEEEEeCCccchHHHHHHHhhhhcccC
Q psy15555 134 LYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYA-FTYP-LFSYIGG-SKVACYIHYPTITKEMLTRVARRVITHNN 210 (488)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~-~~~~-~~~~~~~-~~~v~~~h~p~~~~d~~~~~~~~~~~~~~ 210 (488)
.... +. .....+.+++.+||+||.+...+ ..++ +++...+ +|++...|...+..
T Consensus 57 ~~~~-------~~-~~~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~hg~~~~~--------------- 113 (139)
T PF13477_consen 57 PLNY-------IK-YFRLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVHGSDFYN--------------- 113 (139)
T ss_pred cHHH-------HH-HHHHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEecCCeeec---------------
Confidence 1111 12 23567889999999999887655 3333 3333455 89999888543100
Q ss_pred ccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcC
Q psy15555 211 SQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNS 249 (488)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 249 (488)
+ ... .+...++.+.+++++|.++++|
T Consensus 114 ------~---~~~----~~~~~~~~~~~~k~~~~ii~~~ 139 (139)
T PF13477_consen 114 ------S---SKK----KKLKKFIIKFAFKRADKIIVQS 139 (139)
T ss_pred ------C---Cch----HHHHHHHHHHHHHhCCEEEEcC
Confidence 0 000 1133446677889999999986
No 146
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.03 E-value=0.0005 Score=63.97 Aligned_cols=100 Identities=11% Similarity=0.090 Sum_probs=60.5
Q ss_pred eEEEEeeccCCCCCh--HHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCCh
Q psy15555 290 VKIISVAQFRPEKDH--PLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPY 367 (488)
Q Consensus 290 ~~i~~~g~~~~~k~~--~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 367 (488)
.+++..|...+.|.. +...+..+.+.++ +.++++.|...+. +..++..+..+-...+.+.|..+-
T Consensus 123 ~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~-------~~~ivl~g~~~e~------~~~~~i~~~~~~~~~~~~~~~~~l 189 (279)
T cd03789 123 VVVLPPGASGPAKRWPAERFAALADRLLAR-------GARVVLTGGPAER------ELAEEIAAALGGPRVVNLAGKTSL 189 (279)
T ss_pred EEEECCCCCCccccCCHHHHHHHHHHHHHC-------CCEEEEEechhhH------HHHHHHHHhcCCCccccCcCCCCH
Confidence 344444444444443 4555555555542 5688888864321 333444443321234556777788
Q ss_pred HHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeC
Q psy15555 368 EDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHK 407 (488)
Q Consensus 368 ~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~ 407 (488)
.|+..+++.||++|.+. + | .+--|.+.|+|+|+--
T Consensus 190 ~e~~~li~~~~l~I~~D---s-g-~~HlA~a~~~p~i~l~ 224 (279)
T cd03789 190 RELAALLARADLVVTND---S-G-PMHLAAALGTPTVALF 224 (279)
T ss_pred HHHHHHHHhCCEEEeeC---C-H-HHHHHHHcCCCEEEEE
Confidence 99999999999999863 1 2 3334469999999843
No 147
>PLN02208 glycosyltransferase family protein
Probab=98.01 E-value=0.019 Score=56.71 Aligned_cols=220 Identities=10% Similarity=-0.025 Sum_probs=112.7
Q ss_pred HhcccCEEEEcChhHH-HHHHHHhccC--CceEEEcCCCC-ch-------hhhccCCCCCCCCeEEEEeeccCCCCChHH
Q psy15555 238 VGKYSDIIMVNSSWTE-EHVIQLWNCQ--LKTYKLYPPCD-TE-------DLKKITHSKTDGPVKIISVAQFRPEKDHPL 306 (488)
Q Consensus 238 ~~~~~d~ii~~s~~~~-~~~~~~~~~~--~k~~vi~~~~d-~~-------~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ 306 (488)
....+|.|+++|=... ..+.+.+..+ .++..|++-.. .+ .....-.....+..+.+..|+... -..+.
T Consensus 190 ~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~-l~~~q 268 (442)
T PLN02208 190 GLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPMFPEPDTSKPLEEQWSHFLSGFPPKSVVFCSLGSQII-LEKDQ 268 (442)
T ss_pred hhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeecccCcCCCCCCHHHHHHHHhcCCCCcEEEEecccccc-CCHHH
Confidence 4567899999885443 2333333211 35666665421 11 000000112234567777787653 23344
Q ss_pred HHHHHHHhHHhhhhhccCceEEEEEec-CCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCC
Q psy15555 307 QLRAMYQLRQIISEELWDNLKLIFIGS-TRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMW 385 (488)
Q Consensus 307 ll~a~~~l~~~~~~~~~~~~~l~ivG~-~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~ 385 (488)
+.+.+..+.... -+..+++-.. +........-+.+.+..+ ..++.+.++.|+.++ ++...+..+-+
T Consensus 269 ~~e~~~~l~~s~-----~pf~wv~r~~~~~~~~~~~lp~~f~~r~~----~~g~~v~~W~PQ~~i---L~H~~v~~Fvt- 335 (442)
T PLN02208 269 FQELCLGMELTG-----LPFLIAVKPPRGSSTVQEGLPEGFEERVK----GRGVVWGGWVQQPLI---LDHPSIGCFVN- 335 (442)
T ss_pred HHHHHHHHHhCC-----CcEEEEEeCCCcccchhhhCCHHHHHHHh----cCCcEeeccCCHHHH---hcCCccCeEEc-
Confidence 556555542221 2344444311 100000011123333333 246778899988764 55665433322
Q ss_pred CCcCCccHHHHHHcCCcEEEeCCCC----CccceeccCCCccccceecC-------CHHHHHHHHHHHHccCH-HHHHHH
Q psy15555 386 NEHFGIGIVECMAAGLIMIAHKSGG----PKMDIVIEDPETCRNGFLAC-------DEVEYAQTIKLILHLSQ-DTKTRI 453 (488)
Q Consensus 386 ~e~~g~~~lEa~a~G~PvI~~~~~~----~~~eiv~~~~~~~~~g~~~~-------~~~~l~~~i~~ll~~~~-~~~~~~ 453 (488)
.++-++++||+++|+|+|+-+..+ +..-+++.. +.|..++ +.+++.+++.++++ ++ +..+++
T Consensus 336 -HcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~----g~gv~~~~~~~~~~~~~~l~~ai~~~m~-~~~e~g~~~ 409 (442)
T PLN02208 336 -HCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEF----EVSVEVSREKTGWFSKESLSNAIKSVMD-KDSDLGKLV 409 (442)
T ss_pred -cCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHh----ceeEEeccccCCcCcHHHHHHHHHHHhc-CCchhHHHH
Confidence 233468999999999999977643 211122223 4555442 67899999999997 54 445566
Q ss_pred HHHHHHH---H-hhcCHHHHHHHHHHHH
Q psy15555 454 SQNAVSS---V-DRFSMEEFKNGFLTFT 477 (488)
Q Consensus 454 ~~~a~~~---~-~~~s~~~~~~~~~~~~ 477 (488)
.+++++. + +.-|..+..+++.+-+
T Consensus 410 r~~~~~~~~~~~~~gsS~~~l~~~v~~l 437 (442)
T PLN02208 410 RSNHTKLKEILVSPGLLTGYVDKFVEEL 437 (442)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 6655433 2 3344444444444433
No 148
>PLN02670 transferase, transferring glycosyl groups
Probab=98.01 E-value=0.021 Score=56.83 Aligned_cols=108 Identities=12% Similarity=0.113 Sum_probs=67.1
Q ss_pred cEEEecCCChHHHHHHHHhCcE--EEEcCCCCcCCccHHHHHHcCCcEEEeCCCC----CccceeccCCCccccceecC-
Q psy15555 358 NVEFKVNLPYEDMKKEFSEGLI--GLHAMWNEHFGIGIVECMAAGLIMIAHKSGG----PKMDIVIEDPETCRNGFLAC- 430 (488)
Q Consensus 358 ~v~~~g~~~~~el~~~~~~ad~--~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~----~~~eiv~~~~~~~~~g~~~~- 430 (488)
.+++.+++|+.++ ++...+ ||. .++-++++||+++|+|+|+.+..+ +. ..+... +.|+.++
T Consensus 340 G~vv~~W~PQ~~I---L~H~~v~~Fvt----HcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na-~~v~~~----g~Gv~l~~ 407 (472)
T PLN02670 340 GMIHVGWVPQVKI---LSHESVGGFLT----HCGWNSVVEGLGFGRVLILFPVLNEQGLNT-RLLHGK----KLGLEVPR 407 (472)
T ss_pred CeEEeCcCCHHHH---hcCcccceeee----cCCcchHHHHHHcCCCEEeCcchhccHHHH-HHHHHc----CeeEEeec
Confidence 3777899988764 555554 443 344578999999999999977632 22 233333 5665542
Q ss_pred -------CHHHHHHHHHHHHccCHHHHHHHHHHHHHHH----hhcCHHHHHHHHHHHHHH
Q psy15555 431 -------DEVEYAQTIKLILHLSQDTKTRISQNAVSSV----DRFSMEEFKNGFLTFTQP 479 (488)
Q Consensus 431 -------~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~----~~~s~~~~~~~~~~~~~~ 479 (488)
+.+++.+++.+++. +++ -.++.+++++.. ++=..+..++.+.+.+.+
T Consensus 408 ~~~~~~~~~e~i~~av~~vm~-~~~-g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~ 465 (472)
T PLN02670 408 DERDGSFTSDSVAESVRLAMV-DDA-GEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLRE 465 (472)
T ss_pred cccCCcCcHHHHHHHHHHHhc-Ccc-hHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHH
Confidence 58899999999997 542 234445554444 334444455555444443
No 149
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.95 E-value=0.0015 Score=62.01 Aligned_cols=99 Identities=9% Similarity=0.007 Sum_probs=62.9
Q ss_pred CCeEEEEeeccCCCCChH--HHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCC
Q psy15555 288 GPVKIISVAQFRPEKDHP--LQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNL 365 (488)
Q Consensus 288 ~~~~i~~~g~~~~~k~~~--~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 365 (488)
++.+++..|.-...|... ...+....+.+ .+.++++.|+++. ..+..++..+..+ +..+.|..
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~-------~~~~~vl~~g~~~-----e~~~~~~i~~~~~---~~~l~g~~ 243 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLA-------RGLQIVLPWGNDA-----EKQRAERIAEALP---GAVVLPKM 243 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHH-------CCCeEEEeCCCHH-----HHHHHHHHHhhCC---CCeecCCC
Confidence 456777777666777764 44455555543 2567777765542 1133344443322 23567888
Q ss_pred ChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEe
Q psy15555 366 PYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAH 406 (488)
Q Consensus 366 ~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~ 406 (488)
+-.|+..+++.||++|+.- ++++- =|.|.|+|+|+-
T Consensus 244 sL~el~ali~~a~l~I~~D---Sgp~H--lAaa~g~P~i~l 279 (319)
T TIGR02193 244 SLAEVAALLAGADAVVGVD---TGLTH--LAAALDKPTVTL 279 (319)
T ss_pred CHHHHHHHHHcCCEEEeCC---ChHHH--HHHHcCCCEEEE
Confidence 8899999999999999853 33333 356889999984
No 150
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=97.94 E-value=0.0039 Score=59.28 Aligned_cols=98 Identities=15% Similarity=0.042 Sum_probs=59.2
Q ss_pred CeEEEEeeccCCCCChH--HHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCC
Q psy15555 289 PVKIISVAQFRPEKDHP--LQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLP 366 (488)
Q Consensus 289 ~~~i~~~g~~~~~k~~~--~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 366 (488)
+.+++..|.....|... ...+....+.+ .+.++++.++++.+ .+..++..+. ..++.+.|..+
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~-------~~~~ivl~~G~~~e-----~~~~~~i~~~---~~~~~l~g~~s 243 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAP-------SGLRIKLPWGAEHE-----EQRAKRLAEG---FPYVEVLPKLS 243 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHH-------CCCeEEEeCCCHHH-----HHHHHHHHcc---CCcceecCCCC
Confidence 44444455444556654 45555555543 25567776434321 1333333332 13466778888
Q ss_pred hHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEe
Q psy15555 367 YEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAH 406 (488)
Q Consensus 367 ~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~ 406 (488)
-.|+..+++.||++|+.. ++ .+==|.|+|+|+|+-
T Consensus 244 L~elaali~~a~l~I~nD---SG--p~HlA~A~g~p~val 278 (322)
T PRK10964 244 LEQVARVLAGAKAVVSVD---TG--LSHLTAALDRPNITL 278 (322)
T ss_pred HHHHHHHHHhCCEEEecC---Cc--HHHHHHHhCCCEEEE
Confidence 899999999999999853 22 334478889999993
No 151
>PLN02210 UDP-glucosyl transferase
Probab=97.94 E-value=0.028 Score=55.91 Aligned_cols=105 Identities=13% Similarity=0.006 Sum_probs=65.9
Q ss_pred cEEEecCCChHHHHHHHHhCc--EEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCcc---ceecc-CCCccccceecC-
Q psy15555 358 NVEFKVNLPYEDMKKEFSEGL--IGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKM---DIVIE-DPETCRNGFLAC- 430 (488)
Q Consensus 358 ~v~~~g~~~~~el~~~~~~ad--~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~---eiv~~-~~~~~~~g~~~~- 430 (488)
+..+.+++|+.+ +++.+. +||. .++-.+++|++.+|+|+|+-+..+-.. ..+.+ . +.|..+.
T Consensus 325 ~g~v~~w~PQ~~---iL~h~~vg~Fit----H~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~----g~G~~l~~ 393 (456)
T PLN02210 325 QGVVLEWSPQEK---ILSHMAISCFVT----HCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVF----GIGVRMRN 393 (456)
T ss_pred CeEEEecCCHHH---HhcCcCcCeEEe----eCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHh----CeEEEEec
Confidence 345679998765 567776 5553 233458999999999999977643210 22222 3 4565541
Q ss_pred -------CHHHHHHHHHHHHccCHH------HHHHHHHHHHHHH-hhcCHHHHHHHHH
Q psy15555 431 -------DEVEYAQTIKLILHLSQD------TKTRISQNAVSSV-DRFSMEEFKNGFL 474 (488)
Q Consensus 431 -------~~~~l~~~i~~ll~~~~~------~~~~~~~~a~~~~-~~~s~~~~~~~~~ 474 (488)
+.+++.+++++++. +++ ..+++++.+++.+ +.-|..+-.+++.
T Consensus 394 ~~~~~~~~~~~l~~av~~~m~-~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v 450 (456)
T PLN02210 394 DAVDGELKVEEVERCIEAVTE-GPAAADIRRRAAELKHVARLALAPGGSSARNLDLFI 450 (456)
T ss_pred cccCCcCCHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 67899999999997 543 3334555566555 5555554444443
No 152
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=97.89 E-value=5.5e-07 Score=76.76 Aligned_cols=90 Identities=16% Similarity=0.138 Sum_probs=61.1
Q ss_pred CcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCc----c---ceeccCCCccccceec
Q psy15555 357 NNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPK----M---DIVIEDPETCRNGFLA 429 (488)
Q Consensus 357 ~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~----~---eiv~~~~~~~~~g~~~ 429 (488)
.+|.+.++. +++.++|+.||++|.- +++.++.|++++|+|.|.-+..+.. . ..+.+. ..+...
T Consensus 55 ~~v~~~~~~--~~m~~~m~~aDlvIs~----aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~----g~~~~~ 124 (167)
T PF04101_consen 55 PNVKVFGFV--DNMAELMAAADLVISH----AGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK----GAAIML 124 (167)
T ss_dssp CCCEEECSS--SSHHHHHHHHSEEEEC----S-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC----CCCCCS
T ss_pred CcEEEEech--hhHHHHHHHcCEEEeC----CCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc----CCcccc
Confidence 579999998 7899999999988863 4467999999999999987775521 0 112222 344443
Q ss_pred C----CHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy15555 430 C----DEVEYAQTIKLILHLSQDTKTRISQNA 457 (488)
Q Consensus 430 ~----~~~~l~~~i~~ll~~~~~~~~~~~~~a 457 (488)
. ++++|.++|.+++. ++..+.++.+++
T Consensus 125 ~~~~~~~~~L~~~i~~l~~-~~~~~~~~~~~~ 155 (167)
T PF04101_consen 125 DESELNPEELAEAIEELLS-DPEKLKEMAKAA 155 (167)
T ss_dssp ECCC-SCCCHHHHHHCHCC-CHH-SHHHCCCH
T ss_pred CcccCCHHHHHHHHHHHHc-CcHHHHHHHHHH
Confidence 2 57889999999998 887766665553
No 153
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=97.84 E-value=0.0064 Score=58.45 Aligned_cols=103 Identities=7% Similarity=0.023 Sum_probs=61.8
Q ss_pred CCeEEEEeeccCCCCCh--HHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCC
Q psy15555 288 GPVKIISVAQFRPEKDH--PLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNL 365 (488)
Q Consensus 288 ~~~~i~~~g~~~~~k~~--~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 365 (488)
+..+++..|.-.+.|.. +...+.++.+.+ .+..+++.|+.. +.+. +..++..+..+-+..+.+.|..
T Consensus 181 ~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~-------~~~~ivl~g~p~-~~e~---~~~~~i~~~~~~~~~~~l~g~~ 249 (344)
T TIGR02201 181 QNYIVIQPTSRWFFKCWDNDRFSALIDALHA-------RGYEVVLTSGPD-KDEL---AMVNEIAQGCQTPRVTSLAGKL 249 (344)
T ss_pred CCEEEEeCCCCccccCCCHHHHHHHHHHHHh-------CCCeEEEecCCC-HHHH---HHHHHHHhhCCCCcccccCCCC
Confidence 34566677765566664 344444444432 356788888532 1111 2223333322222235578888
Q ss_pred ChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEe
Q psy15555 366 PYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAH 406 (488)
Q Consensus 366 ~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~ 406 (488)
+-.|+..+++.||++|+. ++++ +==|.|.|+|+|+-
T Consensus 250 sL~el~ali~~a~l~Vs~---DSGp--~HlAaA~g~p~v~L 285 (344)
T TIGR02201 250 TLPQLAALIDHARLFIGV---DSVP--MHMAAALGTPLVAL 285 (344)
T ss_pred CHHHHHHHHHhCCEEEec---CCHH--HHHHHHcCCCEEEE
Confidence 889999999999999986 3333 33467889999983
No 154
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=97.81 E-value=0.0016 Score=62.70 Aligned_cols=100 Identities=12% Similarity=0.059 Sum_probs=60.6
Q ss_pred CCeEEEEeecc-CCCCChH--HHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCC---CCcEEE
Q psy15555 288 GPVKIISVAQF-RPEKDHP--LQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSL---ENNVEF 361 (488)
Q Consensus 288 ~~~~i~~~g~~-~~~k~~~--~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l---~~~v~~ 361 (488)
+..+.+..|.- .+.|... .+.+..+.+.+ .++++++.|+..+. +..++..+..+- ...+.+
T Consensus 180 ~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~-------~~~~vvl~Gg~~e~------~~~~~i~~~~~~~~~~~~~~l 246 (348)
T PRK10916 180 RPIIGFCPGAEFGPAKRWPHYHYAELAQQLID-------EGYQVVLFGSAKDH------EAGNEILAALNTEQQAWCRNL 246 (348)
T ss_pred CCEEEEeCCCCCccccCCCHHHHHHHHHHHHH-------CCCeEEEEeCHHhH------HHHHHHHHhcccccccceeec
Confidence 34566677654 3566653 34444444432 36788888864321 223333333221 112556
Q ss_pred ecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEE
Q psy15555 362 KVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIA 405 (488)
Q Consensus 362 ~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~ 405 (488)
.|..+-.|+..+++.||++|+.- ++++ ==|.|.|+|+|+
T Consensus 247 ~g~~sL~el~ali~~a~l~I~nD---TGp~--HlAaA~g~P~va 285 (348)
T PRK10916 247 AGETQLEQAVILIAACKAIVTND---SGLM--HVAAALNRPLVA 285 (348)
T ss_pred cCCCCHHHHHHHHHhCCEEEecC---ChHH--HHHHHhCCCEEE
Confidence 78778899999999999999753 3332 346788999998
No 155
>PLN02562 UDP-glycosyltransferase
Probab=97.76 E-value=0.054 Score=53.81 Aligned_cols=87 Identities=10% Similarity=0.037 Sum_probs=58.5
Q ss_pred CCcEEEecCCChHHHHHHHHhCc--EEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCC----ccceeccCCCccccceec
Q psy15555 356 ENNVEFKVNLPYEDMKKEFSEGL--IGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGP----KMDIVIEDPETCRNGFLA 429 (488)
Q Consensus 356 ~~~v~~~g~~~~~el~~~~~~ad--~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~----~~eiv~~~~~~~~~g~~~ 429 (488)
++++.+.+++|+.++ ++..+ +||. .++-.+++||+.+|+|+|+.+..+- ...+.+.. +.|+-+
T Consensus 327 ~~~~~v~~w~PQ~~i---L~h~~v~~fvt----H~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~----g~g~~~ 395 (448)
T PLN02562 327 SKQGKVVSWAPQLEV---LKHQAVGCYLT----HCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVW----KIGVRI 395 (448)
T ss_pred ccCEEEEecCCHHHH---hCCCccceEEe----cCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHh----CceeEe
Confidence 457888899988765 55555 4443 3345689999999999999776432 11122222 455555
Q ss_pred C--CHHHHHHHHHHHHccCHHHHHHHH
Q psy15555 430 C--DEVEYAQTIKLILHLSQDTKTRIS 454 (488)
Q Consensus 430 ~--~~~~l~~~i~~ll~~~~~~~~~~~ 454 (488)
. +.+++++++++++. +++.+++..
T Consensus 396 ~~~~~~~l~~~v~~~l~-~~~~r~~a~ 421 (448)
T PLN02562 396 SGFGQKEVEEGLRKVME-DSGMGERLM 421 (448)
T ss_pred CCCCHHHHHHHHHHHhC-CHHHHHHHH
Confidence 3 78999999999998 766555443
No 156
>PLN02173 UDP-glucosyl transferase family protein
Probab=97.74 E-value=0.056 Score=53.49 Aligned_cols=82 Identities=16% Similarity=0.033 Sum_probs=53.6
Q ss_pred CCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCC----ccceeccCCCccccceecC-
Q psy15555 356 ENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGP----KMDIVIEDPETCRNGFLAC- 430 (488)
Q Consensus 356 ~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~----~~eiv~~~~~~~~~g~~~~- 430 (488)
.+++.+.+++|+.+ +++...+..+-+ .++.++++||+++|+|+|+-+..+. ..-+++.. +.|+-+.
T Consensus 316 ~~~~~i~~W~PQ~~---iL~H~~v~~Fvt--HcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~----g~Gv~v~~ 386 (449)
T PLN02173 316 KDKSLVLKWSPQLQ---VLSNKAIGCFMT--HCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVW----KVGVRVKA 386 (449)
T ss_pred CCceEEeCCCCHHH---HhCCCccceEEe--cCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHh----CceEEEee
Confidence 35688889998765 566666333222 3456799999999999999776332 11122221 2344331
Q ss_pred -------CHHHHHHHHHHHHccCH
Q psy15555 431 -------DEVEYAQTIKLILHLSQ 447 (488)
Q Consensus 431 -------~~~~l~~~i~~ll~~~~ 447 (488)
+.+++.+++.+++. ++
T Consensus 387 ~~~~~~~~~e~v~~av~~vm~-~~ 409 (449)
T PLN02173 387 EKESGIAKREEIEFSIKEVME-GE 409 (449)
T ss_pred cccCCcccHHHHHHHHHHHhc-CC
Confidence 57999999999997 53
No 157
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.68 E-value=0.01 Score=56.80 Aligned_cols=99 Identities=10% Similarity=0.072 Sum_probs=61.0
Q ss_pred CCeEEEEeecc-CCCCChH--HHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC
Q psy15555 288 GPVKIISVAQF-RPEKDHP--LQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN 364 (488)
Q Consensus 288 ~~~~i~~~g~~-~~~k~~~--~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 364 (488)
++.+++..|.- .+.|... ...+..+.+.+ .+.++++.|...+. +. .++..+..+ ...+.+.|.
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~-------~~~~ivl~G~~~e~---~~---~~~i~~~~~-~~~~~l~g~ 239 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLID-------QGYQVVLFGSAKDH---PA---GNEIEALLP-GELRNLAGE 239 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHH-------CCCEEEEEEChhhH---HH---HHHHHHhCC-cccccCCCC
Confidence 45566676663 4667654 44555555543 25678888865321 22 333333222 122346788
Q ss_pred CChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEE
Q psy15555 365 LPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIA 405 (488)
Q Consensus 365 ~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~ 405 (488)
.+-.|+..+++.||++|+.- +++ +==|.|.|+|+|+
T Consensus 240 ~sL~el~ali~~a~l~I~~D---SGp--~HlAaA~~~P~i~ 275 (334)
T TIGR02195 240 TSLDEAVDLIALAKAVVTND---SGL--MHVAAALNRPLVA 275 (334)
T ss_pred CCHHHHHHHHHhCCEEEeeC---CHH--HHHHHHcCCCEEE
Confidence 88899999999999999753 222 2346788999998
No 158
>PLN02554 UDP-glycosyltransferase family protein
Probab=97.68 E-value=0.078 Score=53.30 Aligned_cols=110 Identities=15% Similarity=0.025 Sum_probs=63.2
Q ss_pred CcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCC----CccceeccCCCccccceec---
Q psy15555 357 NNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGG----PKMDIVIEDPETCRNGFLA--- 429 (488)
Q Consensus 357 ~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~----~~~eiv~~~~~~~~~g~~~--- 429 (488)
+++.+.+++|+.++..- ..+++||. .++-.+++||+.+|+|+|+.+..+ +...+++.. +.|..+
T Consensus 342 ~~g~v~~W~PQ~~iL~H-~~v~~Fvt----H~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~----g~Gv~l~~~ 412 (481)
T PLN02554 342 DIGKVIGWAPQVAVLAK-PAIGGFVT----HCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEEL----GLAVEIRKY 412 (481)
T ss_pred cCceEEeeCCHHHHhCC-cccCcccc----cCccchHHHHHHcCCCEEecCccccchhhHHHHHHHh----CceEEeecc
Confidence 56677899987765321 33444553 334568999999999999977642 211223333 344432
Q ss_pred -----------C-CHHHHHHHHHHHHccCHHHHHH---HHHHHHHHH-hhcCHHHHHHHHHH
Q psy15555 430 -----------C-DEVEYAQTIKLILHLSQDTKTR---ISQNAVSSV-DRFSMEEFKNGFLT 475 (488)
Q Consensus 430 -----------~-~~~~l~~~i~~ll~~~~~~~~~---~~~~a~~~~-~~~s~~~~~~~~~~ 475 (488)
. +.+++.+++.+++..+++.+++ +++.+++.+ +.-|..+-.+++.+
T Consensus 413 ~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~av~~gGss~~~l~~lv~ 474 (481)
T PLN02554 413 WRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVALMDGGSSHTALKKFIQ 474 (481)
T ss_pred ccccccccccCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 1 7889999999999524433333 333344443 33444443344433
No 159
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=97.61 E-value=0.047 Score=51.25 Aligned_cols=155 Identities=16% Similarity=0.104 Sum_probs=88.9
Q ss_pred HHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCC-CchhhhccCCCCCCCCeEEEEeeccC--CCCChHHHHHH
Q psy15555 234 LYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPC-DTEDLKKITHSKTDGPVKIISVAQFR--PEKDHPLQLRA 310 (488)
Q Consensus 234 ~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~-d~~~~~~~~~~~~~~~~~i~~~g~~~--~~k~~~~ll~a 310 (488)
+.+.+++++|.+.+-.+...+.+++. +. ++.+.+.+. ..+..........+++.+.+.+.... .++..+.+.++
T Consensus 120 ~~~~~l~~~~~i~vRD~~S~~~l~~~-g~--~i~~~~D~a~~l~~~~~~~~~~~~~~~i~i~~r~~~~~~~~~~~~l~~~ 196 (298)
T TIGR03609 120 LVRRVLRGCRAISVRDAASYRLLKRL-GI--PAELAADPVWLLPPEPWPGGEPLPEPVIVVSLRPWPLLDVSRLLRLLRA 196 (298)
T ss_pred HHHHHHccCCEEEEeCHHHHHHHHHh-CC--CceEeCChhhhCCCCcccccccCCCCeEEEEECCCCcCCHHHHHHHHHH
Confidence 45567899999999999989888775 43 355555431 11100000011112233333333221 11224456677
Q ss_pred HHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCC
Q psy15555 311 MYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFG 390 (488)
Q Consensus 311 ~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g 390 (488)
+..+.++. +.++++++.+.. .|.+..+++.+ ...-+..+. ...+.+|+..+++.||++|....
T Consensus 197 l~~l~~~~------g~~v~~i~~~~~-~D~~~~~~l~~---~~~~~~~i~--~~~~~~e~~~~i~~~~~vI~~Rl----- 259 (298)
T TIGR03609 197 LDRLQRDT------GAFVLFLPFQQP-QDLPLARALRD---QLLGPAEVL--SPLDPEELLGLFASARLVIGMRL----- 259 (298)
T ss_pred HHHHHHhh------CCeEEEEeCCcc-hhHHHHHHHHH---hcCCCcEEE--ecCCHHHHHHHHhhCCEEEEech-----
Confidence 77776653 566767775432 22233333333 332123332 44566899999999998887653
Q ss_pred ccHHHHHHcCCcEEEeCC
Q psy15555 391 IGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 391 ~~~lEa~a~G~PvI~~~~ 408 (488)
|..+=|+.+|+|+|+-..
T Consensus 260 H~~I~A~~~gvP~i~i~y 277 (298)
T TIGR03609 260 HALILAAAAGVPFVALSY 277 (298)
T ss_pred HHHHHHHHcCCCEEEeec
Confidence 689999999999998643
No 160
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=97.57 E-value=0.11 Score=51.94 Aligned_cols=114 Identities=11% Similarity=0.032 Sum_probs=69.9
Q ss_pred CcEEEecCCChHHHHHHHHhCcE--EEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCc---ccee-ccCCCccccceecC
Q psy15555 357 NNVEFKVNLPYEDMKKEFSEGLI--GLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPK---MDIV-IEDPETCRNGFLAC 430 (488)
Q Consensus 357 ~~v~~~g~~~~~el~~~~~~ad~--~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~---~eiv-~~~~~~~~~g~~~~ 430 (488)
.++++.+++|+.++ ++...+ ||. .++.++++||+.+|+|+|+-+..+-. ...+ +.. +.|...+
T Consensus 338 rg~vv~~W~PQ~~i---L~h~~vg~Fit----H~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~----g~gv~~~ 406 (481)
T PLN02992 338 RGFVVPSWAPQAEI---LAHQAVGGFLT----HCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDEL----GIAVRSD 406 (481)
T ss_pred CCEEEeecCCHHHH---hCCcccCeeEe----cCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHh----CeeEEec
Confidence 35888899988765 555554 443 34456899999999999997764321 0222 233 4555441
Q ss_pred ------CHHHHHHHHHHHHccCH------HHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHhhh
Q psy15555 431 ------DEVEYAQTIKLILHLSQ------DTKTRISQNAVSSVD---RFSMEEFKNGFLTFTQPLFK 482 (488)
Q Consensus 431 ------~~~~l~~~i~~ll~~~~------~~~~~~~~~a~~~~~---~~s~~~~~~~~~~~~~~~~~ 482 (488)
+.+++.+++.+++. ++ +..+++++.+++.+. .-|..+-.+++.+.+...+.
T Consensus 407 ~~~~~~~~~~l~~av~~vm~-~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~~~~~~~ 472 (481)
T PLN02992 407 DPKEVISRSKIEALVRKVMV-EEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTKECQRFLE 472 (481)
T ss_pred CCCCcccHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHH
Confidence 67899999999997 53 233344444555442 34555555555555554443
No 161
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=97.51 E-value=0.0033 Score=52.68 Aligned_cols=106 Identities=12% Similarity=0.065 Sum_probs=67.6
Q ss_pred cCCcEEEecCCccchhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHHHHHHHHHH
Q psy15555 158 FQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFALLYSH 237 (488)
Q Consensus 158 ~~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (488)
+.||||+.+.+|...+.+-....++|++.|+-+-+... ....+....+ -.+.......+......-.
T Consensus 65 f~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E~~y~~~---------g~d~~FDpe~----p~~~~~~~~~r~rN~~~l~ 131 (171)
T PF12000_consen 65 FVPDVIIAHPGWGETLFLKDVFPDAPLIGYFEFYYRAS---------GADVGFDPEF----PPSLDDRARLRMRNAHNLL 131 (171)
T ss_pred CCCCEEEEcCCcchhhhHHHhCCCCcEEEEEEEEecCC---------CCcCCCCCCC----CCCHHHHHHHHHHhHHHHH
Confidence 56999999999999887766678999998875421100 0000000000 0111112222222223335
Q ss_pred HhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhh
Q psy15555 238 VGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDL 278 (488)
Q Consensus 238 ~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~ 278 (488)
.+..+|..++.|.+.++.+-..+. +|+.|++-|+|++.+
T Consensus 132 ~l~~~D~~isPT~wQ~~~fP~~~r--~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 132 ALEQADAGISPTRWQRSQFPAEFR--SKISVIHDGIDTDRF 170 (171)
T ss_pred HHHhCCcCcCCCHHHHHhCCHHHH--cCcEEeecccchhhc
Confidence 667899999999999999988665 579999999998764
No 162
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=97.33 E-value=0.0032 Score=57.02 Aligned_cols=132 Identities=14% Similarity=0.079 Sum_probs=69.2
Q ss_pred EEEEeccCCC---CCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHh---hhhcc--------ccc-----
Q psy15555 54 TVAFFHPYCN---AGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRA---HQRFN--------IVL----- 114 (488)
Q Consensus 54 rI~~~~~~~~---~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~--------~~~----- 114 (488)
||++++..+. ..||...++..|.++|+++ |++|.+.+...+. ..+.. ..... +++
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~--G~~V~Vi~P~y~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 74 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQ--GHDVRVIMPKYGF----IDEEYFQLEPVRRLSVPFGGPVPVGVWYE 74 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHT--T-EEEEEEE-THH----HHHHCTTEEEEEEES-STTCEEEEE----
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhc--CCeEEEEEccchh----hhhhhhcceEEEEeccccccccccccceE
Confidence 6888875443 5678889999999999999 5666666665321 11111 00000 000
Q ss_pred -------CCCeeEEEEeeccceeec-cCc-----hhHHHHHHHHHHHHHHHHHhhh--cCCcEEEecCCccchhhhhhhh
Q psy15555 115 -------PDQVINFVYLYRRKFVEA-SLY-----PYFTLLGQSIGSMILGVEALLS--FQPDIYIDTMGYAFTYPLFSYI 179 (488)
Q Consensus 115 -------~~~~v~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~l~~--~~pDiii~~~~~~~~~~~~~~~ 179 (488)
.++ +.+..+..+.+..+ ..+ .......++.-+...+..++++ ++|||||.+......+|..-..
T Consensus 75 ~~v~~~~~~~-v~v~~i~~~~~f~r~~iY~~~~~~~~d~~~rf~~fs~a~le~~~~l~~~pDIIH~hDW~tal~p~~lk~ 153 (245)
T PF08323_consen 75 VRVYRYPVDG-VPVYFIDNPEYFDRPGIYGDNGGDYPDNAERFAFFSRAALELLKKLGWKPDIIHCHDWHTALAPLYLKE 153 (245)
T ss_dssp EEEEEEEETT-EEEEEEESHHHHGSSSSSBSTSSBHTTHHHHHHHHHHHHHHHHCTCT-S-SEEEEECGGGTTHHHHHHH
T ss_pred EEEEEEEcCC-ccEEEecChhhccccceeccCCCcchhHHHHHHHHHHHHHHHHHhhCCCCCEEEecCchHHHHHHHhcc
Confidence 123 66666555444322 122 1122222222233455566666 5899999888666666544322
Q ss_pred -C-------CCeeEEEEeCCc
Q psy15555 180 -G-------GSKVACYIHYPT 192 (488)
Q Consensus 180 -~-------~~~~v~~~h~p~ 192 (488)
. ++|+++++|...
T Consensus 154 ~~~~~~~~~~~~~v~TIHN~~ 174 (245)
T PF08323_consen 154 RYQQDPFFANIPTVFTIHNLE 174 (245)
T ss_dssp CCSS------SEEEEEESSTT
T ss_pred ccccccccccceeEEEEcccc
Confidence 2 589999999743
No 163
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.32 E-value=0.0063 Score=60.28 Aligned_cols=110 Identities=13% Similarity=0.058 Sum_probs=66.3
Q ss_pred CCcEEEecCCChHHHHHHHHhCc--EEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCC----ccceeccCCCccccceec
Q psy15555 356 ENNVEFKVNLPYEDMKKEFSEGL--IGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGP----KMDIVIEDPETCRNGFLA 429 (488)
Q Consensus 356 ~~~v~~~g~~~~~el~~~~~~ad--~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~----~~eiv~~~~~~~~~g~~~ 429 (488)
.++..+.+++|+.++ ++..+ +||. .++-++++||+++|+|+|+-+..+. ..-+.+.. +.|+.+
T Consensus 323 ~~~g~v~~w~PQ~~i---L~h~~v~~fvt----H~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~----~~G~~~ 391 (451)
T PLN02410 323 SGRGYIVKWAPQKEV---LSHPAVGGFWS----HCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVW----KIGIQV 391 (451)
T ss_pred cCCeEEEccCCHHHH---hCCCccCeeee----cCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHh----CeeEEe
Confidence 356677799988774 55544 4554 2334689999999999999776432 11112221 356554
Q ss_pred C---CHHHHHHHHHHHHccCHHHHHHHHHH-------HHHHH-hhcCHHHHHHHHHHHHH
Q psy15555 430 C---DEVEYAQTIKLILHLSQDTKTRISQN-------AVSSV-DRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 430 ~---~~~~l~~~i~~ll~~~~~~~~~~~~~-------a~~~~-~~~s~~~~~~~~~~~~~ 478 (488)
+ +.+++++++++++. +++ .+++.++ +++.+ +.-|..+-.+++.+.+.
T Consensus 392 ~~~~~~~~v~~av~~lm~-~~~-~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~ 449 (451)
T PLN02410 392 EGDLDRGAVERAVKRLMV-EEE-GEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMR 449 (451)
T ss_pred CCcccHHHHHHHHHHHHc-CCc-HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 2 88999999999997 543 2333333 33333 33455554555554443
No 164
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=97.31 E-value=0.0008 Score=68.39 Aligned_cols=135 Identities=16% Similarity=0.133 Sum_probs=77.9
Q ss_pred CCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCC
Q psy15555 287 DGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLP 366 (488)
Q Consensus 287 ~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 366 (488)
.+..+++..|+... ...+..++++.+..++. |+ ++++.-++... .. +++|+....++|
T Consensus 275 ~~~vv~vsfGs~~~-~~~~~~~~~~~~~~~~~-----~~-~~iW~~~~~~~------~~---------l~~n~~~~~W~P 332 (500)
T PF00201_consen 275 KKGVVYVSFGSIVS-SMPEEKLKEIAEAFENL-----PQ-RFIWKYEGEPP------EN---------LPKNVLIVKWLP 332 (500)
T ss_dssp TTEEEEEE-TSSST-T-HHHHHHHHHHHHHCS-----TT-EEEEEETCSHG------CH---------HHTTEEEESS--
T ss_pred CCCEEEEecCcccc-hhHHHHHHHHHHHHhhC-----CC-ccccccccccc------cc---------ccceEEEecccc
Confidence 34567777888753 23444455555555554 45 67776554210 11 146789999998
Q ss_pred hHHHHHHHHhCc--EEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCcc---ceeccCCCccccceecC----CHHHHHH
Q psy15555 367 YEDMKKEFSEGL--IGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC----DEVEYAQ 437 (488)
Q Consensus 367 ~~el~~~~~~ad--~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~----~~~~l~~ 437 (488)
+.++ ++... +||. .++-.++.||+.+|+|+|+-+..+-.. ..+++. +.|...+ +.+++.+
T Consensus 333 Q~~l---L~hp~v~~fit----HgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~----G~g~~l~~~~~~~~~l~~ 401 (500)
T PF00201_consen 333 QNDL---LAHPRVKLFIT----HGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEK----GVGVVLDKNDLTEEELRA 401 (500)
T ss_dssp HHHH---HTSTTEEEEEE----S--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHT----TSEEEEGGGC-SHHHHHH
T ss_pred chhh---hhcccceeeee----ccccchhhhhhhccCCccCCCCcccCCccceEEEEE----eeEEEEEecCCcHHHHHH
Confidence 8655 55554 4553 344568999999999999987743211 223333 4566554 7899999
Q ss_pred HHHHHHccCHHHHHHHHH
Q psy15555 438 TIKLILHLSQDTKTRISQ 455 (488)
Q Consensus 438 ~i~~ll~~~~~~~~~~~~ 455 (488)
+|.++++ |+..+++..+
T Consensus 402 ai~~vl~-~~~y~~~a~~ 418 (500)
T PF00201_consen 402 AIREVLE-NPSYKENAKR 418 (500)
T ss_dssp HHHHHHH-SHHHHHHHHH
T ss_pred HHHHHHh-hhHHHHHHHH
Confidence 9999999 8755544333
No 165
>PLN02207 UDP-glycosyltransferase
Probab=97.28 E-value=0.038 Score=54.89 Aligned_cols=216 Identities=13% Similarity=0.033 Sum_probs=106.6
Q ss_pred HhcccCEEEEcChhHHHH-HHHHhc---cCCceEEEcCCCCch--h-----------hhccCCCCCCCCeEEEEeeccCC
Q psy15555 238 VGKYSDIIMVNSSWTEEH-VIQLWN---CQLKTYKLYPPCDTE--D-----------LKKITHSKTDGPVKIISVAQFRP 300 (488)
Q Consensus 238 ~~~~~d~ii~~s~~~~~~-~~~~~~---~~~k~~vi~~~~d~~--~-----------~~~~~~~~~~~~~~i~~~g~~~~ 300 (488)
...++|.++++|-...+. ..+.+. ...++..|++-.... . ....-...+.+..+.+..|+...
T Consensus 208 ~~~~~~~vlvNtf~~LE~~~~~~~~~~~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~ 287 (468)
T PLN02207 208 LFTKANGILVNSSFDIEPYSVNHFLDEQNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGR 287 (468)
T ss_pred hcccCCEEEEEchHHHhHHHHHHHHhccCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcC
Confidence 357799999999877665 333231 112466665543110 0 00000112234567777777642
Q ss_pred C--CChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCC-cHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhC
Q psy15555 301 E--KDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEE-DEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEG 377 (488)
Q Consensus 301 ~--k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~-~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~a 377 (488)
- +....++.++... +..++++=+.+... .....+.+.+.. .++..+.++.|+.++..- ...
T Consensus 288 ~~~~q~~ela~~l~~~----------~~~flW~~r~~~~~~~~~lp~~f~er~-----~~~g~i~~W~PQ~~IL~H-~~v 351 (468)
T PLN02207 288 LRGPLVKEIAHGLELC----------QYRFLWSLRTEEVTNDDLLPEGFLDRV-----SGRGMICGWSPQVEILAH-KAV 351 (468)
T ss_pred CCHHHHHHHHHHHHHC----------CCcEEEEEeCCCccccccCCHHHHhhc-----CCCeEEEEeCCHHHHhcc-ccc
Confidence 2 2233333333332 23455543322110 000001222222 356677799988876433 223
Q ss_pred cEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCC----CccceeccCCCccccceec-----------CCHHHHHHHHHHH
Q psy15555 378 LIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGG----PKMDIVIEDPETCRNGFLA-----------CDEVEYAQTIKLI 442 (488)
Q Consensus 378 d~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~----~~~eiv~~~~~~~~~g~~~-----------~~~~~l~~~i~~l 442 (488)
.+||. .++-++++||+.+|+|+|+-+..+ +..-+++.. +.|+-+ -+.+++.++|+++
T Consensus 352 g~FvT----H~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~----gvGv~~~~~~~~~~~~~v~~e~i~~av~~v 423 (468)
T PLN02207 352 GGFVS----HCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKEL----KLAVELKLDYRVHSDEIVNANEIETAIRCV 423 (468)
T ss_pred ceeee----cCccccHHHHHHcCCCEEecCccccchhhHHHHHHHh----CceEEEecccccccCCcccHHHHHHHHHHH
Confidence 33553 233468999999999999977633 221123223 445411 1678999999999
Q ss_pred Hcc-CHHH---HHHHHHHHHHHH-hhcCHHHHHHHHHHHH
Q psy15555 443 LHL-SQDT---KTRISQNAVSSV-DRFSMEEFKNGFLTFT 477 (488)
Q Consensus 443 l~~-~~~~---~~~~~~~a~~~~-~~~s~~~~~~~~~~~~ 477 (488)
+.. +++. .+++++.+++.+ +.-|..+..+++.+-+
T Consensus 424 m~~~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~ 463 (468)
T PLN02207 424 MNKDNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDV 463 (468)
T ss_pred HhcchHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 951 1222 223334444444 4455555444444443
No 166
>PLN00164 glucosyltransferase; Provisional
Probab=97.23 E-value=0.28 Score=49.22 Aligned_cols=89 Identities=8% Similarity=0.084 Sum_probs=56.1
Q ss_pred cEEEecCCChHHHHHHHHhCc--EEEEcCCCCcCCccHHHHHHcCCcEEEeCCCC----CccceeccCCCccccceecC-
Q psy15555 358 NVEFKVNLPYEDMKKEFSEGL--IGLHAMWNEHFGIGIVECMAAGLIMIAHKSGG----PKMDIVIEDPETCRNGFLAC- 430 (488)
Q Consensus 358 ~v~~~g~~~~~el~~~~~~ad--~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~----~~~eiv~~~~~~~~~g~~~~- 430 (488)
.+.+.+++|+.+ +++.++ +||. .++-++++||+.+|+|+|+-+..+ +..-+++.. +.|+.+.
T Consensus 340 g~~v~~w~PQ~~---iL~h~~vg~fvt----H~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~----gvG~~~~~ 408 (480)
T PLN00164 340 GLVWPTWAPQKE---ILAHAAVGGFVT----HCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADM----GVAVAMKV 408 (480)
T ss_pred CeEEeecCCHHH---HhcCcccCeEEe----ecccchHHHHHHcCCCEEeCCccccchhHHHHHHHHh----CeEEEecc
Confidence 467778987765 466666 3443 233468999999999999976632 221123333 4565431
Q ss_pred --------CHHHHHHHHHHHHccCHH-HHHHHHHHHH
Q psy15555 431 --------DEVEYAQTIKLILHLSQD-TKTRISQNAV 458 (488)
Q Consensus 431 --------~~~~l~~~i~~ll~~~~~-~~~~~~~~a~ 458 (488)
+.+++.++|.+++. +++ +.+++.+++.
T Consensus 409 ~~~~~~~~~~e~l~~av~~vm~-~~~~~~~~~r~~a~ 444 (480)
T PLN00164 409 DRKRDNFVEAAELERAVRSLMG-GGEEEGRKAREKAA 444 (480)
T ss_pred ccccCCcCcHHHHHHHHHHHhc-CCchhHHHHHHHHH
Confidence 57899999999997 543 2344444443
No 167
>PLN00414 glycosyltransferase family protein
Probab=97.16 E-value=0.011 Score=58.39 Aligned_cols=202 Identities=8% Similarity=-0.034 Sum_probs=108.3
Q ss_pred HhcccCEEEEcChhHHH-HHHHHhcc--CCceEEEcCCCCchh----------hhccCCCCCCCCeEEEEeeccCCCCCh
Q psy15555 238 VGKYSDIIMVNSSWTEE-HVIQLWNC--QLKTYKLYPPCDTED----------LKKITHSKTDGPVKIISVAQFRPEKDH 304 (488)
Q Consensus 238 ~~~~~d~ii~~s~~~~~-~~~~~~~~--~~k~~vi~~~~d~~~----------~~~~~~~~~~~~~~i~~~g~~~~~k~~ 304 (488)
....+|.|+++|=...+ .+.+.+.. ..++..|+|-+.... ....-...+.+..+.+..|+.... ..
T Consensus 189 ~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~-~~ 267 (446)
T PLN00414 189 GLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLTGPMLPEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFF-EK 267 (446)
T ss_pred hhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEEcccCCCcccccCcccHHHHHHHHhcCCCCceEEEeecccccC-CH
Confidence 34678999998854432 22222211 124666666531110 001112233455677788887543 23
Q ss_pred HHHHHHHHHhHHhhhhhccCceEEEEEec-CCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhC--cEEE
Q psy15555 305 PLQLRAMYQLRQIISEELWDNLKLIFIGS-TRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEG--LIGL 381 (488)
Q Consensus 305 ~~ll~a~~~l~~~~~~~~~~~~~l~ivG~-~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~a--d~~v 381 (488)
+.+.+....|.... .++..++... +........-+.+.+..+.. ..++.+++|+.++ ++.+ ++||
T Consensus 268 ~q~~e~a~gL~~s~-----~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~----g~vv~~w~PQ~~v---L~h~~v~~fv 335 (446)
T PLN00414 268 DQFQEFCLGMELTG-----LPFLIAVMPPKGSSTVQEALPEGFEERVKGR----GIVWEGWVEQPLI---LSHPSVGCFV 335 (446)
T ss_pred HHHHHHHHHHHHcC-----CCeEEEEecCCCcccchhhCChhHHHHhcCC----CeEEeccCCHHHH---hcCCccceEE
Confidence 45555555555443 3433344321 10000011223444444433 4667799988764 5555 4465
Q ss_pred EcCCCCcCCccHHHHHHcCCcEEEeCCCC----Ccccee-ccCCCccccceec-------CCHHHHHHHHHHHHccCHHH
Q psy15555 382 HAMWNEHFGIGIVECMAAGLIMIAHKSGG----PKMDIV-IEDPETCRNGFLA-------CDEVEYAQTIKLILHLSQDT 449 (488)
Q Consensus 382 ~~s~~e~~g~~~lEa~a~G~PvI~~~~~~----~~~eiv-~~~~~~~~~g~~~-------~~~~~l~~~i~~ll~~~~~~ 449 (488)
. .++.++++||+.+|+|+|+-+..+ +. ..+ +.. +.|..+ -+.+++.+++++++.++.+.
T Consensus 336 t----H~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na-~~~~~~~----g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~ 406 (446)
T PLN00414 336 N----HCGFGSMWESLVSDCQIVFIPQLADQVLIT-RLLTEEL----EVSVKVQREDSGWFSKESLRDTVKSVMDKDSEI 406 (446)
T ss_pred e----cCchhHHHHHHHcCCCEEecCcccchHHHH-HHHHHHh----CeEEEeccccCCccCHHHHHHHHHHHhcCChhh
Confidence 4 344578999999999999977632 22 222 233 455544 27889999999999722355
Q ss_pred HHHHHHHHHHHH
Q psy15555 450 KTRISQNAVSSV 461 (488)
Q Consensus 450 ~~~~~~~a~~~~ 461 (488)
.+++.+++++..
T Consensus 407 g~~~r~~a~~~~ 418 (446)
T PLN00414 407 GNLVKRNHKKLK 418 (446)
T ss_pred HHHHHHHHHHHH
Confidence 566666665443
No 168
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.13 E-value=0.35 Score=48.44 Aligned_cols=111 Identities=17% Similarity=0.084 Sum_probs=67.1
Q ss_pred CcEEEecCCChHHHHHHHHh--CcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCC----CccceeccCCCccccceec-
Q psy15555 357 NNVEFKVNLPYEDMKKEFSE--GLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGG----PKMDIVIEDPETCRNGFLA- 429 (488)
Q Consensus 357 ~~v~~~g~~~~~el~~~~~~--ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~----~~~eiv~~~~~~~~~g~~~- 429 (488)
.++.+.+++|+.+ +++. +++||. .++.++++||+++|+|+|+-+..+ +..-+++.. +.|...
T Consensus 343 ~g~~v~~w~PQ~~---vL~h~~v~~fvt----H~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~----gvG~~~~ 411 (477)
T PLN02863 343 RGLVIRGWAPQVA---ILSHRAVGAFLT----HCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDEL----KVAVRVC 411 (477)
T ss_pred CCEEecCCCCHHH---HhcCCCcCeEEe----cCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhh----ceeEEec
Confidence 4688889998765 4555 445664 344568999999999999977632 211123332 455443
Q ss_pred ------CCHHHHHHHHHHHHccCHHHHH---HHHHHHHHHH-hhcCHHHHHHHHHHHHH
Q psy15555 430 ------CDEVEYAQTIKLILHLSQDTKT---RISQNAVSSV-DRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 430 ------~~~~~l~~~i~~ll~~~~~~~~---~~~~~a~~~~-~~~s~~~~~~~~~~~~~ 478 (488)
-+.+++.+++.+++..+++.++ ++++.+++.+ +.-|..+..+++.+.+.
T Consensus 412 ~~~~~~~~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~ 470 (477)
T PLN02863 412 EGADTVPDSDELARVFMESVSENQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVV 470 (477)
T ss_pred cCCCCCcCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 1678999999998842444333 3334444444 44555555566655554
No 169
>PLN02534 UDP-glycosyltransferase
Probab=96.93 E-value=0.54 Score=47.20 Aligned_cols=77 Identities=19% Similarity=0.061 Sum_probs=50.2
Q ss_pred CcEEEecCCChHHHHHHHHhCcE--EEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCc----cceeccCCCcccccee--
Q psy15555 357 NNVEFKVNLPYEDMKKEFSEGLI--GLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPK----MDIVIEDPETCRNGFL-- 428 (488)
Q Consensus 357 ~~v~~~g~~~~~el~~~~~~ad~--~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~----~eiv~~~~~~~~~g~~-- 428 (488)
.++.+.+++|+.+ +++..++ ||. .++.++++||+.+|+|+|+-+..+-. ..+++.. +.|+-
T Consensus 344 ~g~~v~~w~pq~~---iL~h~~v~~fvt----H~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~----~vGv~~~ 412 (491)
T PLN02534 344 RGLLIKGWAPQVL---ILSHPAIGGFLT----HCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVL----RIGVRVG 412 (491)
T ss_pred CCeeccCCCCHHH---HhcCCccceEEe----cCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhh----cceEEec
Confidence 4677889998755 5666665 443 45567999999999999997764321 0112111 11111
Q ss_pred ---------------cCCHHHHHHHHHHHHc
Q psy15555 429 ---------------ACDEVEYAQTIKLILH 444 (488)
Q Consensus 429 ---------------~~~~~~l~~~i~~ll~ 444 (488)
+-+.+++++++++++.
T Consensus 413 ~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 413 VEVPVRWGDEERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred ccccccccccccccCccCHHHHHHHHHHHhc
Confidence 1267899999999985
No 170
>KOG1050|consensus
Probab=96.92 E-value=0.34 Score=50.59 Aligned_cols=201 Identities=15% Similarity=0.198 Sum_probs=126.2
Q ss_pred eEEEcCCCCchhhhccCCC------------CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEec
Q psy15555 266 TYKLYPPCDTEDLKKITHS------------KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGS 333 (488)
Q Consensus 266 ~~vi~~~~d~~~~~~~~~~------------~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~ 333 (488)
+..+|-++|...+...... ...++.+++-+-++..-||...=+.++.++..++++- .+++.++.+..
T Consensus 241 v~~~pigid~~r~v~~~~~~~~~~~~~ei~~~~~g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~-~~kVvliqi~~ 319 (732)
T KOG1050|consen 241 VKALPIGIDVQRFVKLLELPYVGSKGMEIKEPFKGKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEW-IDKVVLIQIEN 319 (732)
T ss_pred eeecccccchHHhhccccchhHHHHHHHHhhhccCCceEecccccccccCchHHHHHHHHHHHhChhh-hceEEEEEEec
Confidence 4445556766665443311 2246778888889999999888888999988877321 12455665554
Q ss_pred CCCCCcHHHHHHHHHHHHhc--------CC---CCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHc--C
Q psy15555 334 TRNEEDEVCVKDMQDLCKHL--------SL---ENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAA--G 400 (488)
Q Consensus 334 ~~~~~~~~~~~~l~~~~~~~--------~l---~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~--G 400 (488)
....+..+ .++++..+..+ +- ..-+.+...++..++.++|..+|+.+..++.+|..++.+|+..| +
T Consensus 320 ~~~~~~~~-v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~rdGmnl~~~e~i~~~~~ 398 (732)
T KOG1050|consen 320 PKRTDGKE-VEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSWRDGMNLVFLEYILCQEN 398 (732)
T ss_pred CCcccchH-HHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeecccccccchhhhHHHHhhcc
Confidence 43333322 23333322211 10 12234556679999999999999999999999999999999888 3
Q ss_pred --CcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q psy15555 401 --LIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLT 475 (488)
Q Consensus 401 --~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~ 475 (488)
++.|.+...|.. +..+++ ..++. |.++++.+|...+.+..+.++..-..-...+...+....+..+.+
T Consensus 399 ~~~~lVlsef~G~~-~tl~d~------aivvnpw~~~~~~~~i~~al~~s~~e~~~r~~~~~~~v~~~~~~~W~~~~~~ 470 (732)
T KOG1050|consen 399 KKSVLVLSEFIGDD-TTLEDA------AIVVNPWDGDEFAILISKALTMSDEERELREPKHYKYVSTHDVVYWAKSFLQ 470 (732)
T ss_pred cCCceEEeeecccc-cccccc------CEEECCcchHHHHHHHHHHhhcCHHHHhhcchhhhhhhcchhHHHHHHHHHH
Confidence 778888776664 555443 44444 899999999999994444443333333333333334444444333
No 171
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=96.92 E-value=0.034 Score=57.19 Aligned_cols=139 Identities=15% Similarity=0.153 Sum_probs=98.4
Q ss_pred CCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEec-CCCCC-cHHHHHHHHHHHHhcCCCCcEEEecC
Q psy15555 287 DGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGS-TRNEE-DEVCVKDMQDLCKHLSLENNVEFKVN 364 (488)
Q Consensus 287 ~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~-~~~~~-~~~~~~~l~~~~~~~~l~~~v~~~g~ 364 (488)
++...++++-|++..|...+.+.-...+.....++..|.+.+++.|. +|... ..+....+...++..+...+|+|+..
T Consensus 485 p~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~n 564 (750)
T COG0058 485 PNALFDGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLPN 564 (750)
T ss_pred CCcceeeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeCC
Confidence 45678899999999999776655444444443111225677788885 44331 11222333444444444457999998
Q ss_pred CChHHHHHHHHhCcEEEEcC--CCCcCCccHHHHHHcCCcEEEeCCCCCccceec--cCCCccccceecC
Q psy15555 365 LPYEDMKKEFSEGLIGLHAM--WNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVI--EDPETCRNGFLAC 430 (488)
Q Consensus 365 ~~~~el~~~~~~ad~~v~~s--~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~--~~~~~~~~g~~~~ 430 (488)
.+-.-...++.+||+-...| ..|..|.+-+=++..|.+.|++-.|.+. |+.+ .+ +|||++.
T Consensus 565 YdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanv-Ei~e~vg~----~N~~~fG 629 (750)
T COG0058 565 YDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANV-EIYEHVGG----ENGWIFG 629 (750)
T ss_pred CChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHH-HHHHhcCC----CceEEeC
Confidence 77777778999999887776 5789999999999999999999988886 8886 55 8999987
No 172
>PLN02167 UDP-glycosyltransferase family protein
Probab=96.76 E-value=0.07 Score=53.55 Aligned_cols=106 Identities=12% Similarity=-0.040 Sum_probs=62.6
Q ss_pred cEEEecCCChHHHHHHHHhCc--EEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCC----ccceeccCCCccccceec--
Q psy15555 358 NVEFKVNLPYEDMKKEFSEGL--IGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGP----KMDIVIEDPETCRNGFLA-- 429 (488)
Q Consensus 358 ~v~~~g~~~~~el~~~~~~ad--~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~----~~eiv~~~~~~~~~g~~~-- 429 (488)
+..+.+++|+.+ +++... +||. .++-++++||+++|+|+|+-+..+- ...+++.. +.|+.+
T Consensus 341 rg~v~~w~PQ~~---iL~h~~vg~fvt----H~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~----g~g~~~~~ 409 (475)
T PLN02167 341 RGLVCGWAPQVE---ILAHKAIGGFVS----HCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKEL----GLAVELRL 409 (475)
T ss_pred CeeeeccCCHHH---HhcCcccCeEEe----eCCcccHHHHHHcCCCEEeccccccchhhHHHHHHHh----CeeEEeec
Confidence 346679998765 455543 5554 2334689999999999999766322 11123333 455433
Q ss_pred --------C-CHHHHHHHHHHHHccCHH---HHHHHHHHHHHHH-hhcCHHHHHHHHH
Q psy15555 430 --------C-DEVEYAQTIKLILHLSQD---TKTRISQNAVSSV-DRFSMEEFKNGFL 474 (488)
Q Consensus 430 --------~-~~~~l~~~i~~ll~~~~~---~~~~~~~~a~~~~-~~~s~~~~~~~~~ 474 (488)
. +.+++++++.+++..+.+ ..+++++.+++.+ +.-|..+-.+++.
T Consensus 410 ~~~~~~~~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v 467 (475)
T PLN02167 410 DYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMDGGSSFVAVKRFI 467 (475)
T ss_pred ccccccCCcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 1 678999999999972312 2334444455555 4444444444443
No 173
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=96.74 E-value=0.15 Score=52.52 Aligned_cols=143 Identities=15% Similarity=0.124 Sum_probs=89.6
Q ss_pred CCCeEEEEeeccCCCCChHH-HH---HHHHHhHHhhhhhccCceEEEEEec-CCCCCcHHHHHHHHHHHHhc--------
Q psy15555 287 DGPVKIISVAQFRPEKDHPL-QL---RAMYQLRQIISEELWDNLKLIFIGS-TRNEEDEVCVKDMQDLCKHL-------- 353 (488)
Q Consensus 287 ~~~~~i~~~g~~~~~k~~~~-ll---~a~~~l~~~~~~~~~~~~~l~ivG~-~~~~~~~~~~~~l~~~~~~~-------- 353 (488)
++....+++-|+...|...+ ++ .-+.++++.- .....+.+++++|. +|.. ...+++-+++.+.
T Consensus 442 p~slfdv~~rR~heYKRq~LniL~ii~~y~rik~~p-~~~~~Pv~~IFaGKAhP~d---~~gK~iIk~I~~va~~in~Dp 517 (713)
T PF00343_consen 442 PDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKNNP-NKKIRPVQFIFAGKAHPGD---YMGKEIIKLINNVAEVINNDP 517 (713)
T ss_dssp TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHST-TSCCS-EEEEEE----TT----HHHHHHHHHHHHHHHHHCT-T
T ss_pred cchhhhhhhhhcccccccCcccccHHHHHHHHHhcc-cCCCCCeEEEEeccCCCCc---HHHHHHHHHHHHHHHHHhcCh
Confidence 45677889999999999776 33 3444555431 11123678888885 4433 3334444444322
Q ss_pred CCCC--cEEEecCCChHHHHHHHHhCcEEEEcC--CCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceec
Q psy15555 354 SLEN--NVEFKVNLPYEDMKKEFSEGLIGLHAM--WNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLA 429 (488)
Q Consensus 354 ~l~~--~v~~~g~~~~~el~~~~~~ad~~v~~s--~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~ 429 (488)
.+.+ +|.|+...+-.--..++..||+....| ..|..|.+-+=+|..|.+.+++-.|.+. |+.+.- ..++.+++
T Consensus 518 ~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~ni-Ei~e~v--G~eN~fiF 594 (713)
T PF00343_consen 518 EVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNI-EIAEAV--GEENIFIF 594 (713)
T ss_dssp TTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHH-HHHHHH---GGGSEEE
T ss_pred hhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhH-HHHHhc--CCCcEEEc
Confidence 2233 689999888788888999999999887 5799999999999999999999888876 776542 12567777
Q ss_pred C-CHHHHH
Q psy15555 430 C-DEVEYA 436 (488)
Q Consensus 430 ~-~~~~l~ 436 (488)
. +.+++.
T Consensus 595 G~~~~ev~ 602 (713)
T PF00343_consen 595 GLTAEEVE 602 (713)
T ss_dssp S-BHHHHH
T ss_pred CCCHHHHH
Confidence 6 555543
No 174
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=96.70 E-value=0.14 Score=47.26 Aligned_cols=159 Identities=14% Similarity=0.091 Sum_probs=85.9
Q ss_pred HHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCCCCC--CCeEEEEeeccC---CCCChHHHH
Q psy15555 234 LYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTD--GPVKIISVAQFR---PEKDHPLQL 308 (488)
Q Consensus 234 ~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~~~~--~~~~i~~~g~~~---~~k~~~~ll 308 (488)
..+.++++++.+.+-.+...+.+.+. +.+.++.+++-+.- ...+....... .......+.... .....+.+.
T Consensus 120 ~~~~~l~~~~~i~vRD~~S~~~l~~~-g~~~~~~~~~D~af--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (286)
T PF04230_consen 120 LLRRILSKADYISVRDEYSYELLKKL-GISGNVKLVPDPAF--LLPPSYPDEDKSKPKRNYISVSNSPSRNNEEYIEEIA 196 (286)
T ss_pred HHHHHHhCCCEEEECCHHHHHHHHHc-CCCCCcEEEeCchh--hcCcccccccccccccceeeeccccchhhhhHHHHHH
Confidence 44557788999999999988866664 43325666665531 11111111000 012222222221 223344555
Q ss_pred HHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHH-hcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCC
Q psy15555 309 RAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCK-HLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNE 387 (488)
Q Consensus 309 ~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~-~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e 387 (488)
+.+..+.+.. ....++.....+... .......... ..............+..|+..+++.||++|....
T Consensus 197 ~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Is~Rl-- 266 (286)
T PF04230_consen 197 ELIQRLLDKG-----YKIVLLPFSPSDDDE---DDDDFNEIDIKAEKFFNVIIIDYSLSPDELLELISQADLVISMRL-- 266 (286)
T ss_pred HHHHHhhccc-----ceeEEEEeeeccchh---hHHHHHhhhhhcccccceeEecCCCCHHHHHHHHhcCCEEEecCC--
Confidence 6666665532 334443333333221 1111111111 1122233444555677999999999999998763
Q ss_pred cCCccHHHHHHcCCcEEEeCC
Q psy15555 388 HFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 388 ~~g~~~lEa~a~G~PvI~~~~ 408 (488)
|..+=|+++|+|+|+-+.
T Consensus 267 ---H~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 267 ---HGAILALSLGVPVIAISY 284 (286)
T ss_pred ---HHHHHHHHcCCCEEEEec
Confidence 688999999999998654
No 175
>PLN03004 UDP-glycosyltransferase
Probab=96.67 E-value=0.04 Score=54.54 Aligned_cols=82 Identities=17% Similarity=0.105 Sum_probs=56.2
Q ss_pred CcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCC----CccceeccCCCccccceecC--
Q psy15555 357 NNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGG----PKMDIVIEDPETCRNGFLAC-- 430 (488)
Q Consensus 357 ~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~----~~~eiv~~~~~~~~~g~~~~-- 430 (488)
.++.+.+++|+.+ +++.+++..+-+ .++-++++||+++|+|+|+.+..+ +...+.+.. +.|+.++
T Consensus 334 ~g~~v~~W~PQ~~---iL~H~~v~~FvT--H~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~----g~g~~l~~~ 404 (451)
T PLN03004 334 KGMVVKSWAPQVP---VLNHKAVGGFVT--HCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEI----KIAISMNES 404 (451)
T ss_pred CcEEEEeeCCHHH---HhCCCccceEec--cCcchHHHHHHHcCCCEEeccccccchhhHHHHHHHh----CceEEecCC
Confidence 5788899998876 577788632222 344568999999999999976632 221222333 4565542
Q ss_pred -----CHHHHHHHHHHHHccCHH
Q psy15555 431 -----DEVEYAQTIKLILHLSQD 448 (488)
Q Consensus 431 -----~~~~l~~~i~~ll~~~~~ 448 (488)
+.+++++++++++. +++
T Consensus 405 ~~~~~~~e~l~~av~~vm~-~~~ 426 (451)
T PLN03004 405 ETGFVSSTEVEKRVQEIIG-ECP 426 (451)
T ss_pred cCCccCHHHHHHHHHHHhc-CHH
Confidence 67899999999998 644
No 176
>PLN02555 limonoid glucosyltransferase
Probab=96.65 E-value=0.068 Score=53.37 Aligned_cols=111 Identities=14% Similarity=0.056 Sum_probs=65.8
Q ss_pred CCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCC----CccceeccCCCccccceec--
Q psy15555 356 ENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGG----PKMDIVIEDPETCRNGFLA-- 429 (488)
Q Consensus 356 ~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~----~~~eiv~~~~~~~~~g~~~-- 429 (488)
.+++.+.+++|+.++... ..+.+||. .++-++++||+.+|+|+|+.+..+ +..-+++.. +.|+.+
T Consensus 336 ~~~g~v~~W~PQ~~iL~H-~~v~~Fvt----H~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~----gvGv~l~~ 406 (480)
T PLN02555 336 GDKGKIVQWCPQEKVLAH-PSVACFVT----HCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVF----KTGVRLCR 406 (480)
T ss_pred CCceEEEecCCHHHHhCC-CccCeEEe----cCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHh----CceEEccC
Confidence 456788899988764332 33455664 344568999999999999977643 111123332 345444
Q ss_pred ----C---CHHHHHHHHHHHHccCHHHHHHHHHHH-------HHHH-hhcCHHHHHHHHHHHH
Q psy15555 430 ----C---DEVEYAQTIKLILHLSQDTKTRISQNA-------VSSV-DRFSMEEFKNGFLTFT 477 (488)
Q Consensus 430 ----~---~~~~l~~~i~~ll~~~~~~~~~~~~~a-------~~~~-~~~s~~~~~~~~~~~~ 477 (488)
. +.+++.+++.+++. +++ -+++.++| ++.+ +.-|..+-.+++.+.+
T Consensus 407 ~~~~~~~v~~~~v~~~v~~vm~-~~~-g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i 467 (480)
T PLN02555 407 GEAENKLITREEVAECLLEATV-GEK-AAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKL 467 (480)
T ss_pred CccccCcCcHHHHHHHHHHHhc-Cch-HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 1 67899999999996 532 23444444 4334 3344444444444333
No 177
>PLN03015 UDP-glucosyl transferase
Probab=96.65 E-value=0.14 Score=50.82 Aligned_cols=75 Identities=12% Similarity=0.000 Sum_probs=48.8
Q ss_pred EEEecCCChHHHHHHHHhCc--EEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCC----ccceeccCCCccccceec---
Q psy15555 359 VEFKVNLPYEDMKKEFSEGL--IGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGP----KMDIVIEDPETCRNGFLA--- 429 (488)
Q Consensus 359 v~~~g~~~~~el~~~~~~ad--~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~----~~eiv~~~~~~~~~g~~~--- 429 (488)
+.+.+++|+.++.. ... .|+. .++-++++||+.+|+|+|+-+..+- ..-+.+.. +.|+-+
T Consensus 337 l~v~~W~PQ~~vL~---h~~vg~fvt----H~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~----gvg~~~~~~ 405 (470)
T PLN03015 337 LVVTQWAPQVEILS---HRSIGGFLS----HCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEI----GVAVRTSEL 405 (470)
T ss_pred eEEEecCCHHHHhc---cCccCeEEe----cCCchhHHHHHHcCCCEEecccccchHHHHHHHHHHh----CeeEEeccc
Confidence 67789998877654 443 3443 3345689999999999999776322 11122222 344333
Q ss_pred -----CCHHHHHHHHHHHHc
Q psy15555 430 -----CDEVEYAQTIKLILH 444 (488)
Q Consensus 430 -----~~~~~l~~~i~~ll~ 444 (488)
-+.+++.+++++++.
T Consensus 406 ~~~~~v~~e~i~~~v~~lm~ 425 (470)
T PLN03015 406 PSEKVIGREEVASLVRKIVA 425 (470)
T ss_pred ccCCccCHHHHHHHHHHHHc
Confidence 167899999999995
No 178
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=96.52 E-value=0.2 Score=45.49 Aligned_cols=105 Identities=13% Similarity=0.132 Sum_probs=57.9
Q ss_pred CCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCC
Q psy15555 287 DGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLP 366 (488)
Q Consensus 287 ~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 366 (488)
+++.+++..|...+.|... .+-+.++.+...+ ....+++.|...+ ...+...+..+... .+.+.+.|..+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp--~e~~~~l~~~l~~---~~~~vvl~g~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~ 173 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWP--AEKWAELIERLKE---RGYRVVLLGGPEE----QEKEIADQIAAGLQ-NPVINLAGKTS 173 (247)
T ss_dssp TSSEEEEE---SSGGGS----HHHHHHHHHHHCC---CT-EEEE--SSHH----HHHHHHHHHHTTHT-TTTEEETTTS-
T ss_pred cCCeEEEeecCCCccccCC--HHHHHHHHHHHHh---hCceEEEEccchH----HHHHHHHHHHHhcc-cceEeecCCCC
Confidence 4567788888877778765 4455555444311 1357778886531 01122233333222 13678888888
Q ss_pred hHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEe
Q psy15555 367 YEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAH 406 (488)
Q Consensus 367 ~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~ 406 (488)
-.|+..+++.||++|++- ++ .+==|.|.|+|+|+-
T Consensus 174 l~e~~ali~~a~~~I~~D---tg--~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 174 LRELAALISRADLVIGND---TG--PMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHHHHTSSEEEEES---SH--HHHHHHHTT--EEEE
T ss_pred HHHHHHHHhcCCEEEecC---Ch--HHHHHHHHhCCEEEE
Confidence 899999999999999863 22 333467889999994
No 179
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.45 E-value=0.14 Score=48.08 Aligned_cols=150 Identities=12% Similarity=-0.010 Sum_probs=86.9
Q ss_pred cccCEEEEcChhHHHHHHHHhccCCceEE---EcCCCCchhhhccCCC------CCCCCeEEEEeeccCCC--CCh---H
Q psy15555 240 KYSDIIMVNSSWTEEHVIQLWNCQLKTYK---LYPPCDTEDLKKITHS------KTDGPVKIISVAQFRPE--KDH---P 305 (488)
Q Consensus 240 ~~~d~ii~~s~~~~~~~~~~~~~~~k~~v---i~~~~d~~~~~~~~~~------~~~~~~~i~~~g~~~~~--k~~---~ 305 (488)
+..|.|++..++- .....++.. .+|.++.+........ ....+.+.+.+|.-+.. =+. .
T Consensus 96 ~~FDlvi~p~HD~-------~~~~~Nvl~t~ga~~~i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~ 168 (311)
T PF06258_consen 96 RPFDLVIVPEHDR-------LPRGPNVLPTLGAPNRITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAE 168 (311)
T ss_pred cccCEEEECcccC-------cCCCCceEecccCCCcCCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHH
Confidence 4469999987761 111223322 3455666554442211 11244556666753322 122 3
Q ss_pred HHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCC
Q psy15555 306 LQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMW 385 (488)
Q Consensus 306 ~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~ 385 (488)
.+++.+..+.+.. ...+.|..+.... .+..+.+++..+. .+.+.+.+.-+.+-+..+|+.||.++.+..
T Consensus 169 ~l~~~l~~~~~~~------~~~~~vttSRRTp--~~~~~~L~~~~~~---~~~~~~~~~~~~nPy~~~La~ad~i~VT~D 237 (311)
T PF06258_consen 169 RLLDQLAALAAAY------GGSLLVTTSRRTP--PEAEAALRELLKD---NPGVYIWDGTGENPYLGFLAAADAIVVTED 237 (311)
T ss_pred HHHHHHHHHHHhC------CCeEEEEcCCCCc--HHHHHHHHHhhcC---CCceEEecCCCCCcHHHHHHhCCEEEEcCc
Confidence 5666666666664 4678887765433 2333444444432 345645555566779999999997776643
Q ss_pred CCcCCccHHHHHHcCCcEEEeCCCC
Q psy15555 386 NEHFGIGIVECMAAGLIMIAHKSGG 410 (488)
Q Consensus 386 ~e~~g~~~lEa~a~G~PvI~~~~~~ 410 (488)
. -.-+.||++.|+||...+..+
T Consensus 238 S---vSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 238 S---VSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred c---HHHHHHHHHcCCCEEEecCCC
Confidence 2 224689999999999987765
No 180
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=96.40 E-value=0.035 Score=57.67 Aligned_cols=147 Identities=16% Similarity=0.114 Sum_probs=102.8
Q ss_pred CCCCeEEEEeeccCCCCChHH-HHHH---HHHhHHhhhhhccCceEEEEEecC-CCCCcHHHHHHHHHHHHhcC------
Q psy15555 286 TDGPVKIISVAQFRPEKDHPL-QLRA---MYQLRQIISEELWDNLKLIFIGST-RNEEDEVCVKDMQDLCKHLS------ 354 (488)
Q Consensus 286 ~~~~~~i~~~g~~~~~k~~~~-ll~a---~~~l~~~~~~~~~~~~~l~ivG~~-~~~~~~~~~~~l~~~~~~~~------ 354 (488)
.++....+++-|+...|...+ ++.. +.++++. ++....+.++++.|.- |.. ...+++-+++....
T Consensus 524 dp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~-p~~~~~P~~~IFaGKAaP~y---~~aK~iIklI~~va~~iN~D 599 (794)
T TIGR02093 524 DPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKED-PPKDIVPRTVIFGGKAAPGY---HMAKLIIKLINSVAEVVNND 599 (794)
T ss_pred CccccchhhheechhhhHHHHHHhhhHHHHHHHHhC-CCcCCCCeEEEEEecCCCCc---HHHHHHHHHHHHHHHHhccC
Confidence 345677788999999999877 5444 4444433 1111125678888854 432 33355555544433
Q ss_pred --CCC--cEEEecCCChHHHHHHHHhCcEEEEcC--CCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCcccccee
Q psy15555 355 --LEN--NVEFKVNLPYEDMKKEFSEGLIGLHAM--WNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFL 428 (488)
Q Consensus 355 --l~~--~v~~~g~~~~~el~~~~~~ad~~v~~s--~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~ 428 (488)
+.+ +|.|+....-.--..++.+||+....| ..|..|..-+=+|..|.+.|++-.|.+. |+.++- +.+|+++
T Consensus 600 p~v~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanv-Ei~e~v--G~eN~fi 676 (794)
T TIGR02093 600 PAVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANV-EIREEV--GAENIFI 676 (794)
T ss_pred hhhCCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhH-HHHHHh--CcccEEE
Confidence 334 699998877777888999999988777 5788999999999999999999988886 888761 1278999
Q ss_pred cC-CHHHHHHHH
Q psy15555 429 AC-DEVEYAQTI 439 (488)
Q Consensus 429 ~~-~~~~l~~~i 439 (488)
+. +.+++.+.-
T Consensus 677 FG~~~~ev~~~~ 688 (794)
T TIGR02093 677 FGLTVEEVEALR 688 (794)
T ss_pred cCCCHHHHHHHH
Confidence 87 777766543
No 181
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=96.39 E-value=0.051 Score=53.79 Aligned_cols=155 Identities=11% Similarity=0.102 Sum_probs=97.4
Q ss_pred CeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChH
Q psy15555 289 PVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYE 368 (488)
Q Consensus 289 ~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 368 (488)
..-++|.=...-+++-+..++++.+. -+++-.+.+... ....+++.|.=+|.++.+
T Consensus 278 ~~AlVyGK~~~~w~~k~~~l~~l~~~---------~eih~tV~~~~~---------------~~~~~P~~V~NHG~l~~~ 333 (559)
T PF15024_consen 278 NQALVYGKERYMWKGKEKYLDVLHKY---------MEIHGTVYDEPQ---------------RPPNVPSFVKNHGILSGD 333 (559)
T ss_pred ceeEEEccchhhhcCcHHHHHHHHhh---------cEEEEEeccCCC---------------CCcccchhhhhcCcCCHH
Confidence 34455544444456666667666543 355555544321 111224445566788999
Q ss_pred HHHHHHHhCcEEEEcCC-CCcCCccHHHHHHcCCcEEEeCCCCCcc----ceeccCC---------------Ccccccee
Q psy15555 369 DMKKEFSEGLIGLHAMW-NEHFGIGIVECMAAGLIMIAHKSGGPKM----DIVIEDP---------------ETCRNGFL 428 (488)
Q Consensus 369 el~~~~~~ad~~v~~s~-~e~~g~~~lEa~a~G~PvI~~~~~~~~~----eiv~~~~---------------~~~~~g~~ 428 (488)
|+..+++.+.+||+... .| |=+++||+|.|+|.|-.....+.. +.+.+.+ .+...-+.
T Consensus 334 ef~~lL~~akvfiGlGfP~E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVyt 411 (559)
T PF15024_consen 334 EFQQLLRKAKVFIGLGFPYE--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYT 411 (559)
T ss_pred HHHHHHHhhhEeeecCCCCC--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEE
Confidence 99999999999997642 33 668999999999999855422210 1111110 11122344
Q ss_pred cC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHH
Q psy15555 429 AC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQP 479 (488)
Q Consensus 429 ~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~~ 479 (488)
|+ |.+++.+||+++++ .+- .-++ -.|+.+.+.+++..++++
T Consensus 412 Vd~~n~~~v~~Avk~il~-~~v---------~Py~P~efT~egmLeRv~~~ie~ 455 (559)
T PF15024_consen 412 VDINNSTEVEAAVKAILA-TPV---------EPYLPYEFTCEGMLERVNALIEK 455 (559)
T ss_pred EcCCCHHHHHHHHHHHHh-cCC---------CCcCCcccCHHHHHHHHHHHHHh
Confidence 44 89999999999998 431 2345 789999999999887764
No 182
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.26 E-value=0.77 Score=40.82 Aligned_cols=107 Identities=7% Similarity=-0.019 Sum_probs=60.4
Q ss_pred CCCeEEEEeeccCCCCCh-----HHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHh-cCCCCcEE
Q psy15555 287 DGPVKIISVAQFRPEKDH-----PLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKH-LSLENNVE 360 (488)
Q Consensus 287 ~~~~~i~~~g~~~~~k~~-----~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~-~~l~~~v~ 360 (488)
.+..+-+.+|.-.+.-.. ..+..++.+..++ ....+.+.-+.... +.++..++. +.-...+.
T Consensus 160 ~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~------~g~~~lisfSRRTp------~~~~s~l~~~l~s~~~i~ 227 (329)
T COG3660 160 PRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILEN------QGGSFLISFSRRTP------DTVKSILKNNLNSSPGIV 227 (329)
T ss_pred CCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHh------CCceEEEEeecCCc------HHHHHHHHhccccCceeE
Confidence 456788888876543332 2233333333332 23445554433221 667776665 33222333
Q ss_pred EecC-CChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCC
Q psy15555 361 FKVN-LPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 361 ~~g~-~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~ 408 (488)
+-+. ...+-...+++.||.+|.+-..- .-.-||++.|+||-+.-.
T Consensus 228 w~~~d~g~NPY~~~La~Adyii~TaDSi---nM~sEAasTgkPv~~~~~ 273 (329)
T COG3660 228 WNNEDTGYNPYIDMLAAADYIISTADSI---NMCSEAASTGKPVFILEP 273 (329)
T ss_pred eCCCCCCCCchHHHHhhcceEEEecchh---hhhHHHhccCCCeEEEec
Confidence 3332 14456889999999888764321 235799999999987544
No 183
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=96.18 E-value=0.026 Score=46.42 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=45.7
Q ss_pred HHHhhhcCCcEEEecCCcc--chhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHH
Q psy15555 152 VEALLSFQPDIYIDTMGYA--FTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYK 229 (488)
Q Consensus 152 ~~~l~~~~pDiii~~~~~~--~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (488)
.+......+|+++.|.-.. ....+.....++|.++|+|...... .......+... +.
T Consensus 52 ~~~~~~~~~dll~aTsmldLa~l~gL~p~l~~~p~ilYFHENQl~Y------------------P~~~~~~rd~~---~~ 110 (168)
T PF12038_consen 52 QQIPLSHSYDLLFATSMLDLATLRGLRPDLANVPKILYFHENQLAY------------------PVSPGQERDFQ---YG 110 (168)
T ss_pred hccccccCCCEEEeeccccHHHHHhhccCCCCCCEEEEEecCcccC------------------CCCCCcccccc---HH
Confidence 3455566789999776222 2222322346899999999643211 00111111111 11
Q ss_pred HHHHHHHHHhcccCEEEEcChhHHHHHHHH
Q psy15555 230 VFALLYSHVGKYSDIIMVNSSWTEEHVIQL 259 (488)
Q Consensus 230 ~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~ 259 (488)
... + ...-.||.|+.+|.+.++.|.+.
T Consensus 111 ~~n-i--~saLaAD~v~FNS~~nr~sFL~~ 137 (168)
T PF12038_consen 111 MNN-I--YSALAADRVVFNSAFNRDSFLDG 137 (168)
T ss_pred HHH-H--HHHHhceeeeecchhhHHHHHHH
Confidence 111 1 23345899999999999988764
No 184
>PRK14986 glycogen phosphorylase; Provisional
Probab=96.18 E-value=0.11 Score=54.23 Aligned_cols=146 Identities=13% Similarity=0.128 Sum_probs=101.2
Q ss_pred CCCCeEEEEeeccCCCCChHH-HHHH---HHHhHHhhhhhccCceEEEEEecC-CCCCcHHHHHHHHHHHHhc-------
Q psy15555 286 TDGPVKIISVAQFRPEKDHPL-QLRA---MYQLRQIISEELWDNLKLIFIGST-RNEEDEVCVKDMQDLCKHL------- 353 (488)
Q Consensus 286 ~~~~~~i~~~g~~~~~k~~~~-ll~a---~~~l~~~~~~~~~~~~~l~ivG~~-~~~~~~~~~~~l~~~~~~~------- 353 (488)
.++....+++-|+...|...+ ++.. +.++++. ++....+.++++.|.- |.. ...+++-+++.+.
T Consensus 540 dp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~-p~~~~~P~~~IFaGKAaP~y---~~aK~iIk~I~~va~~in~D 615 (815)
T PRK14986 540 NPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKAD-PDAKWVPRVNIFAGKAASAY---YMAKHIIHLINDVAKVINND 615 (815)
T ss_pred CcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhC-CCcCCCCeEEEEeecCCCCc---HHHHHHHHHHHHHHHHhccC
Confidence 356678888999999999877 5555 4444433 1111125788888853 432 2233443333222
Q ss_pred -CCCC--cEEEecCCChHHHHHHHHhCcEEEEcC--CCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCcccccee
Q psy15555 354 -SLEN--NVEFKVNLPYEDMKKEFSEGLIGLHAM--WNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFL 428 (488)
Q Consensus 354 -~l~~--~v~~~g~~~~~el~~~~~~ad~~v~~s--~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~ 428 (488)
.+.+ +|.|+....-.--..++.+||+....| ..|..|..-+=+|..|.+.+++-.|.+. |+.++- +++|||+
T Consensus 616 p~v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nv-Ei~e~v--G~eN~~~ 692 (815)
T PRK14986 616 PQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANV-EMLEHV--GEENIFI 692 (815)
T ss_pred hhhcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchh-HHHHhc--CCCcEEE
Confidence 2233 699998877777888999999988877 4788999999999999999999988886 888751 1278999
Q ss_pred cC-CHHHHHHH
Q psy15555 429 AC-DEVEYAQT 438 (488)
Q Consensus 429 ~~-~~~~l~~~ 438 (488)
+. +.+++.+.
T Consensus 693 fG~~~~ev~~~ 703 (815)
T PRK14986 693 FGNTAEEVEAL 703 (815)
T ss_pred eCCCHHHHHHH
Confidence 87 67766654
No 185
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=96.16 E-value=0.17 Score=50.29 Aligned_cols=109 Identities=9% Similarity=0.040 Sum_probs=63.8
Q ss_pred CCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCC----ccceeccCCCccccceec--
Q psy15555 356 ENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGP----KMDIVIEDPETCRNGFLA-- 429 (488)
Q Consensus 356 ~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~----~~eiv~~~~~~~~~g~~~-- 429 (488)
.++..+.+++|+.+ +++..++..+-+ .++.++++||+.+|+|+|+-+..+- ..-+.+.. +.|+-+
T Consensus 326 ~~~g~v~~W~PQ~~---iL~h~~vg~fvt--H~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~----~~G~~~~~ 396 (455)
T PLN02152 326 EEVGMIVSWCSQIE---VLRHRAVGCFVT--HCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIW----KTGVRVRE 396 (455)
T ss_pred cCCeEEEeeCCHHH---HhCCcccceEEe--eCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHh----CceEEeec
Confidence 45677789998765 566666433222 3456789999999999999776332 11122211 133332
Q ss_pred ----C-CHHHHHHHHHHHHccCHHH--H---HHHHHHHHHHH-hhcCHHHHHHHHH
Q psy15555 430 ----C-DEVEYAQTIKLILHLSQDT--K---TRISQNAVSSV-DRFSMEEFKNGFL 474 (488)
Q Consensus 430 ----~-~~~~l~~~i~~ll~~~~~~--~---~~~~~~a~~~~-~~~s~~~~~~~~~ 474 (488)
. +.+++.+++.++++ ++.. + .++++.+++.+ +..|..+-.+++.
T Consensus 397 ~~~~~~~~e~l~~av~~vm~-~~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li 451 (455)
T PLN02152 397 NSEGLVERGEIRRCLEAVME-EKSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFV 451 (455)
T ss_pred CcCCcCcHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 1 67899999999997 5431 2 22244444444 4455544444443
No 186
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=95.96 E-value=0.075 Score=55.22 Aligned_cols=146 Identities=12% Similarity=0.080 Sum_probs=100.4
Q ss_pred CCCCeEEEEeeccCCCCChHH-HHHHHH---HhHHhhhhhccCceEEEEEecC-CCCCcHHHHHHHHHHHHhcC------
Q psy15555 286 TDGPVKIISVAQFRPEKDHPL-QLRAMY---QLRQIISEELWDNLKLIFIGST-RNEEDEVCVKDMQDLCKHLS------ 354 (488)
Q Consensus 286 ~~~~~~i~~~g~~~~~k~~~~-ll~a~~---~l~~~~~~~~~~~~~l~ivG~~-~~~~~~~~~~~l~~~~~~~~------ 354 (488)
.++....+++-|+...|...+ ++..+. ++++. ++....+.++++.|.- |.. ...+++-+++....
T Consensus 526 dp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~-p~~~~~P~~~IFaGKAaP~y---~~aK~iIklI~~va~~in~D 601 (798)
T PRK14985 526 NPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIREN-PQADRVPRVFLFGAKAAPGY---YLAKNIIFAINKVAEVINND 601 (798)
T ss_pred CchhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhC-CCcCCCCeEEEEeecCCCCc---HHHHHHHHHHHHHHHHhcCC
Confidence 345677888889999999776 555444 44333 1111124788888854 432 33344444443322
Q ss_pred --CCC--cEEEecCCChHHHHHHHHhCcEEEEcC--CCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCcccccee
Q psy15555 355 --LEN--NVEFKVNLPYEDMKKEFSEGLIGLHAM--WNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFL 428 (488)
Q Consensus 355 --l~~--~v~~~g~~~~~el~~~~~~ad~~v~~s--~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~ 428 (488)
+.+ .|+|+....-.--..++.+||+....| ..|..|..-+=+|..|.+.|++-.|.+. |+.++- +.+|||+
T Consensus 602 p~v~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanv-Ei~e~v--G~eN~f~ 678 (798)
T PRK14985 602 PLVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANV-EIAEQV--GEENIFI 678 (798)
T ss_pred hhhCCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHH-HHHHHh--CcCcEEE
Confidence 123 689998877777888999999988777 5788999999999999999999988886 887651 1278999
Q ss_pred cC-CHHHHHHH
Q psy15555 429 AC-DEVEYAQT 438 (488)
Q Consensus 429 ~~-~~~~l~~~ 438 (488)
+. +.+++.+.
T Consensus 679 fG~~~~ev~~~ 689 (798)
T PRK14985 679 FGHTVEQVKAL 689 (798)
T ss_pred eCCCHHHHHHH
Confidence 87 66666554
No 187
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.90 E-value=0.075 Score=55.49 Aligned_cols=146 Identities=17% Similarity=0.129 Sum_probs=101.4
Q ss_pred CCCCeEEEEeeccCCCCChHH-HHHH---HHHhHHhhhhhccCceEEEEEecC-CCCCcHHHHHHHHHHHHhcC------
Q psy15555 286 TDGPVKIISVAQFRPEKDHPL-QLRA---MYQLRQIISEELWDNLKLIFIGST-RNEEDEVCVKDMQDLCKHLS------ 354 (488)
Q Consensus 286 ~~~~~~i~~~g~~~~~k~~~~-ll~a---~~~l~~~~~~~~~~~~~l~ivG~~-~~~~~~~~~~~l~~~~~~~~------ 354 (488)
.++....+++-|+...|...+ ++.. +.++++. ++....+..+++.|.- |.. ...+++-+++....
T Consensus 527 dp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~-p~~~~~P~~~IFaGKAaP~y---~~aK~iIklI~~va~~in~D 602 (797)
T cd04300 527 DPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKEN-PNADIVPRTFIFGGKAAPGY---YMAKLIIKLINAVADVVNND 602 (797)
T ss_pred CCCccEEEEeeechhhhhhhhHHHhhHHHHHHHHhC-CCcCCCCeEEEEeccCCCCc---HHHHHHHHHHHHHHHHhccC
Confidence 456778899999999999887 4444 4445443 1111124778888853 432 23344444433321
Q ss_pred --CCC--cEEEecCCChHHHHHHHHhCcEEEEcC--CCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCcccccee
Q psy15555 355 --LEN--NVEFKVNLPYEDMKKEFSEGLIGLHAM--WNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFL 428 (488)
Q Consensus 355 --l~~--~v~~~g~~~~~el~~~~~~ad~~v~~s--~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~ 428 (488)
+.+ .|.|+....-.--..++.+||+....| ..|..|..-+=+|..|.+.|++-.|.+. |+.+.- +.+|+++
T Consensus 603 p~v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanv-Ei~e~v--G~eN~fi 679 (797)
T cd04300 603 PDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANV-EIAEEV--GEENIFI 679 (797)
T ss_pred hhcCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhH-HHHHHh--CcCcEEE
Confidence 233 689998877777888999999988777 5788999999999999999999988886 887761 1278999
Q ss_pred cC-CHHHHHHH
Q psy15555 429 AC-DEVEYAQT 438 (488)
Q Consensus 429 ~~-~~~~l~~~ 438 (488)
+. +.+++.+.
T Consensus 680 FG~~~~ev~~~ 690 (797)
T cd04300 680 FGLTAEEVEAL 690 (797)
T ss_pred eCCCHHHHHHH
Confidence 87 66666544
No 188
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=95.56 E-value=0.082 Score=44.86 Aligned_cols=86 Identities=21% Similarity=0.142 Sum_probs=55.2
Q ss_pred HHHHHHhhhcCCcEEEecCCccchhhh--hhhhC---CCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhh
Q psy15555 149 ILGVEALLSFQPDIYIDTMGYAFTYPL--FSYIG---GSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSF 223 (488)
Q Consensus 149 ~~~~~~l~~~~pDiii~~~~~~~~~~~--~~~~~---~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (488)
..+.+.+++.+||+|++|.+.+..+++ ++... ++|++..+-+... ...
T Consensus 79 ~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~~~----------------------~H~----- 131 (169)
T PF06925_consen 79 RRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDFDT----------------------VHP----- 131 (169)
T ss_pred HHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCCCC----------------------CCc-----
Confidence 356678889999999999877655522 33222 3454432211100 000
Q ss_pred hHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCC
Q psy15555 224 KLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPC 273 (488)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~ 273 (488)
.++-..+|..++.|+++++.+.+.+-.++++.+.+-|+
T Consensus 132 ------------~W~~~~~D~y~Vase~~~~~l~~~Gi~~~~I~vtGiPV 169 (169)
T PF06925_consen 132 ------------FWIHPGVDRYFVASEEVKEELIERGIPPERIHVTGIPV 169 (169)
T ss_pred ------------CeecCCCCEEEECCHHHHHHHHHcCCChhHEEEeCccC
Confidence 02346789999999999999999766667888877654
No 189
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=95.51 E-value=1.1 Score=43.42 Aligned_cols=216 Identities=10% Similarity=0.049 Sum_probs=121.5
Q ss_pred HhcccCEEEEcChhHHHHHHHHhccCC-ceEEEcCCCCchhhhccC-----------CCCCCCCeEEEEeeccCCCC---
Q psy15555 238 VGKYSDIIMVNSSWTEEHVIQLWNCQL-KTYKLYPPCDTEDLKKIT-----------HSKTDGPVKIISVAQFRPEK--- 302 (488)
Q Consensus 238 ~~~~~d~ii~~s~~~~~~~~~~~~~~~-k~~vi~~~~d~~~~~~~~-----------~~~~~~~~~i~~~g~~~~~k--- 302 (488)
...+.|.+.+.+......+.+.++... ++..++-|.....+.... -..+.++++++|.-++.+..
T Consensus 145 ~~~~~dy~~~~~~~~~~if~~~f~~~~~~i~~~G~Pr~D~~~~~~~~~~~~~~~~~~~~~~~~k~vIlyaPTfr~~~~~~ 224 (388)
T COG1887 145 VRNHWDYLISPNPESTAIFAEAFNIDKENILETGYPRNDKLFDEAGKTEDILLIQLALPLPQDKKVILYAPTFRDNDVLI 224 (388)
T ss_pred eeeeeeeeeeCChhhHHHHHHHhcccccceeecCcccchhhhhhccchhhhHHHhhhcCCcccCceEEecCCccCCcccc
Confidence 335568899999888888887777654 555665553322222111 11334688999999988776
Q ss_pred C---hHHHH--HHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhC
Q psy15555 303 D---HPLQL--RAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEG 377 (488)
Q Consensus 303 ~---~~~ll--~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~a 377 (488)
+ ....+ +.+.+...+ .+..+ |+=-||...+ ...... ...+.+..+.. ..++..+|..+
T Consensus 225 ~~~~~~~~~~~~~~~~~l~~------~~~~i-i~k~Hp~is~-----~~~~~~---~~~~~~~~vs~--~~di~dll~~s 287 (388)
T COG1887 225 GTQFFNLDIDIEKLKEKLGE------NEYVI-IVKPHPLISD-----KIDKRY---ALDDFVLDVSD--NADINDLLLVS 287 (388)
T ss_pred chhhhhhhhhHHHHHHhhcc------CCeEE-EEecChhhhh-----hhhhhh---hccceeEeccc--chhHHHHHhhh
Confidence 1 22222 223222221 24444 4444653211 111110 11222333333 48999999999
Q ss_pred cEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCc----cceeccCCCccccceecCCHHHHHHHHHHHHccCHHHHHHH
Q psy15555 378 LIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPK----MDIVIEDPETCRNGFLACDEVEYAQTIKLILHLSQDTKTRI 453 (488)
Q Consensus 378 d~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~----~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~~~~~~~~~~ 453 (488)
|++|. .++-++.|+|..-+|||..-..... .....+. ....-|-++++.+++.++|..... +.+...+.
T Consensus 288 DiLIT-----DySSv~fdf~~l~KPiify~~D~~~y~~~rg~~~d~-~~~~Pg~~~~~~~~li~ai~~~~~-~~~~~~~k 360 (388)
T COG1887 288 DILIT-----DYSSVIFDFMLLDKPIIFYTYDLEQYDELRGFYLDY-KFEAPGEVVETQEELIDAIKPYDE-DGNYDLEK 360 (388)
T ss_pred CEEEe-----echHHHHHHHHhcCcEEEEecChHHHHhhhhhhhhH-HhcCCccccccHHHHHHHHHhhhc-ccchhHHH
Confidence 99886 3466899999999999996432210 0122221 222457777889999999999887 44433333
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHH
Q psy15555 454 SQNAVSSVDRFSMEEFKNGFLTFT 477 (488)
Q Consensus 454 ~~~a~~~~~~~s~~~~~~~~~~~~ 477 (488)
-+...+....+.-.+..+++.+.+
T Consensus 361 ~~~~~~~~~~~~dg~ss~ri~~~i 384 (388)
T COG1887 361 LRVFNDKFNSYEDGRSSERILKLI 384 (388)
T ss_pred HHHHHHhhcccccccHHHHHHHHH
Confidence 333333333344455555555443
No 190
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=95.45 E-value=0.13 Score=47.41 Aligned_cols=89 Identities=11% Similarity=0.011 Sum_probs=54.0
Q ss_pred ChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEE
Q psy15555 303 DHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLH 382 (488)
Q Consensus 303 ~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~ 382 (488)
....+++.+..+.+.. |+.+++|-. ||..........+.+.. + ..++.+...- ..+.+++..||.++.
T Consensus 138 ~~~~~~~~l~~~~~~~-----p~~~lvvK~-HP~~~~~~~~~~~~~~~---~-~~~~~~~~~~--~~~~~Ll~~s~~Vvt 205 (269)
T PF05159_consen 138 SQADFLDMLESFAKEN-----PDAKLVVKP-HPDERGGNKYSYLEELP---N-LPNVVIIDDD--VNLYELLEQSDAVVT 205 (269)
T ss_pred cHhHHHHHHHHHHHHC-----CCCEEEEEE-CchhhCCCChhHhhhhh---c-CCCeEEECCC--CCHHHHHHhCCEEEE
Confidence 4456677777777766 788876554 66321111111122211 2 2344444432 578899999996554
Q ss_pred cCCCCcCCccHHHHHHcCCcEEEeCC
Q psy15555 383 AMWNEHFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 383 ~s~~e~~g~~~lEa~a~G~PvI~~~~ 408 (488)
-+ +.+-+||+.+|+||++...
T Consensus 206 in-----StvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 206 IN-----STVGLEALLHGKPVIVFGR 226 (269)
T ss_pred EC-----CHHHHHHHHcCCceEEecC
Confidence 33 5688999999999999644
No 191
>KOG1192|consensus
Probab=94.78 E-value=0.34 Score=49.23 Aligned_cols=142 Identities=18% Similarity=0.160 Sum_probs=76.9
Q ss_pred CeEEEEeeccCC-----CCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcC--CCCcEEE
Q psy15555 289 PVKIISVAQFRP-----EKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLS--LENNVEF 361 (488)
Q Consensus 289 ~~~i~~~g~~~~-----~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~--l~~~v~~ 361 (488)
..+++..|+... ++....++.++..+ +++.++..=+.+.. .. ..+... .+.+|..
T Consensus 278 ~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~---------~~~~FiW~~~~~~~------~~---~~~~~~~~~~~nV~~ 339 (496)
T KOG1192|consen 278 SVVYISFGSMVNSADLPEEQKKELAKALESL---------QGVTFLWKYRPDDS------IY---FPEGLPNRGRGNVVL 339 (496)
T ss_pred CeEEEECCcccccccCCHHHHHHHHHHHHhC---------CCceEEEEecCCcc------hh---hhhcCCCCCcCceEE
Confidence 456666676642 23333444444443 46667777665422 11 111111 1347899
Q ss_pred ecCCChHHHHHHHHhCcEEEEcCCCCcCC-ccHHHHHHcCCcEEEeCCC----CCccceeccCCCccccceecC---CHH
Q psy15555 362 KVNLPYEDMKKEFSEGLIGLHAMWNEHFG-IGIVECMAAGLIMIAHKSG----GPKMDIVIEDPETCRNGFLAC---DEV 433 (488)
Q Consensus 362 ~g~~~~~el~~~~~~ad~~v~~s~~e~~g-~~~lEa~a~G~PvI~~~~~----~~~~eiv~~~~~~~~~g~~~~---~~~ 433 (488)
.+++|+.++. +....+..+-+ ++| .+++|++.+|+|+|+.+.- .+...+.+.+ ..+.... +..
T Consensus 340 ~~W~PQ~~ll--l~H~~v~~FvT---HgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g----~~~v~~~~~~~~~ 410 (496)
T KOG1192|consen 340 SKWAPQNDLL--LDHPAVGGFVT---HGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHG----GGGVLDKRDLVSE 410 (496)
T ss_pred ecCCCcHHHh--cCCCcCcEEEE---CCcccHHHHHHhcCCceecCCccccchhHHHHHHhCC----CEEEEehhhcCcH
Confidence 9999988876 22222222211 223 4579999999999975542 2332344443 3344432 233
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q psy15555 434 EYAQTIKLILHLSQDTKTRISQNAV 458 (488)
Q Consensus 434 ~l~~~i~~ll~~~~~~~~~~~~~a~ 458 (488)
++.+++..++. +++..+...+-+.
T Consensus 411 ~~~~~~~~il~-~~~y~~~~~~l~~ 434 (496)
T KOG1192|consen 411 ELLEAIKEILE-NEEYKEAAKRLSE 434 (496)
T ss_pred HHHHHHHHHHc-ChHHHHHHHHHHH
Confidence 38888889887 6665555444443
No 192
>KOG0780|consensus
Probab=94.63 E-value=1.9 Score=40.81 Aligned_cols=167 Identities=10% Similarity=0.121 Sum_probs=94.6
Q ss_pred eccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEe-cCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCC-----hHH
Q psy15555 296 AQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIG-STRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLP-----YED 369 (488)
Q Consensus 296 g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG-~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~-----~~e 369 (488)
|..+.-+-.....+...+.+++ ++.++|+- +|+...+.+.++++.+..+..+ +++|.|+=.-+ .+.
T Consensus 161 gsyte~dpv~ia~egv~~fKke-------~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~-Pd~vi~VmDasiGQaae~Q 232 (483)
T KOG0780|consen 161 GSYTEADPVKIASEGVDRFKKE-------NFDVIIVDTSGRHKQEASLFEEMKQVSKAIK-PDEIIFVMDASIGQAAEAQ 232 (483)
T ss_pred ecccccchHHHHHHHHHHHHhc-------CCcEEEEeCCCchhhhHHHHHHHHHHHhhcC-CCeEEEEEeccccHhHHHH
Confidence 4445556666777777777764 66777764 2344455678888888888777 67777753221 122
Q ss_pred HHHHHHhCcE--EEEcCC----CCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceec--CCHHHHHHHHHH
Q psy15555 370 MKKEFSEGLI--GLHAMW----NEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLA--CDEVEYAQTIKL 441 (488)
Q Consensus 370 l~~~~~~ad~--~v~~s~----~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~--~~~~~l~~~i~~ 441 (488)
...+=...|+ .|.+-. ..++.++.. .+.++|||.-..|..- +-++..+...-.+-+. .|.+.|.+.+.+
T Consensus 233 a~aFk~~vdvg~vIlTKlDGhakGGgAlSaV--aaTksPIiFIGtGEhm-dDlE~F~pk~FvsrlLGmGDi~glvek~~e 309 (483)
T KOG0780|consen 233 ARAFKETVDVGAVILTKLDGHAKGGGALSAV--AATKSPIIFIGTGEHM-DDLEPFDPKPFVSRLLGMGDIEGLVEKVQE 309 (483)
T ss_pred HHHHHHhhccceEEEEecccCCCCCceeeeh--hhhCCCEEEEecCccc-cccCCCChHHHHHHHhccccHHHHHHHHHH
Confidence 3333344552 344331 122234444 4579999997766554 2222220000111112 289999999998
Q ss_pred HHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy15555 442 ILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 442 ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~ 478 (488)
+...|.+...+.-.. .+|+...+.+++.++++
T Consensus 310 v~~~d~~el~~kl~~-----gkFtlrd~y~Qfq~imk 341 (483)
T KOG0780|consen 310 VGKDDAKELVEKLKQ-----GKFTLRDFYDQFQNIMK 341 (483)
T ss_pred HhhhhHHHHHHHHHh-----CCccHHHHHHHHHHHHh
Confidence 873243333222222 57898888888877764
No 193
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=94.62 E-value=1.6 Score=36.87 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEecCCcc
Q psy15555 143 QSIGSMILGVEALLSFQPDIYIDTMGYA 170 (488)
Q Consensus 143 ~~~~~~~~~~~~l~~~~pDiii~~~~~~ 170 (488)
..+.+.....+.+.+.+||+|+++.+..
T Consensus 76 ~~l~~~~~~~~il~r~rPdvii~nGpg~ 103 (170)
T PF08660_consen 76 TTLRAFLQSLRILRRERPDVIISNGPGT 103 (170)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEcCCce
Confidence 3344445566778888999999886443
No 194
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.67 E-value=4.9 Score=36.76 Aligned_cols=214 Identities=12% Similarity=0.084 Sum_probs=113.5
Q ss_pred hcccCEEEEcChhHHHHHHHHhccCCceEEEcCC-CCchhhhccC-CCCCCCCeE-EEEeecc--CCCCChHHHHHHHHH
Q psy15555 239 GKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPP-CDTEDLKKIT-HSKTDGPVK-IISVAQF--RPEKDHPLQLRAMYQ 313 (488)
Q Consensus 239 ~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~-~d~~~~~~~~-~~~~~~~~~-i~~~g~~--~~~k~~~~ll~a~~~ 313 (488)
-++|-.++.-...+.+.+... +++ ...+.|+ .|.-...... ........+ -+-.|.- +.+.+...++.++..
T Consensus 176 ~rrc~~vf~rD~~Taq~L~~r-gvn--a~~vGnpmmD~L~p~~~~~q~l~~g~~viaLLPGsR~pea~~nl~~il~slca 252 (412)
T COG4370 176 RRRCWAVFPRDALTAQHLANR-GVN--AAYVGNPMMDGLPPPERDPQLLLTGVPVIALLPGSRVPEAQTNLAVILGSLCA 252 (412)
T ss_pred cccceeeeccccccHHHHHhc-CCc--hhhccChhhccCCCccCCchhhccCCceEEecCCCCChHHHhhHHHHHHHHhh
Confidence 367777888777888888774 333 4555665 2321110000 111122233 3334433 235677888887777
Q ss_pred hHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCC--------CcEEEecCCChHHHHHHHHhCcEEEEcCC
Q psy15555 314 LRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLE--------NNVEFKVNLPYEDMKKEFSEGLIGLHAMW 385 (488)
Q Consensus 314 l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~--------~~v~~~g~~~~~el~~~~~~ad~~v~~s~ 385 (488)
+.... .. +++.+.-..+-. ..-+..+.++.|.. ++..+. .+.+...+++..+|+.+...
T Consensus 253 l~~~~-----a~--vvfw~ai~~~lp---l~~l~~l~e~~gWq~~ad~~~kdnc~l~--lsqqsfadiLH~adaalgmA- 319 (412)
T COG4370 253 LPAMF-----AL--VVFWAAIAPELP---LLLLWTLEERQGWQPLADRFGKDNCSLW--LSQQSFADILHAADAALGMA- 319 (412)
T ss_pred hHHHH-----HH--HHHHhccCcCCC---HHHHHHHHHhcCcchhhhhhccCceEEE--EeHHHHHHHHHHHHHHHHhc-
Confidence 76654 12 122222211111 13445555554432 233332 24478888899999644322
Q ss_pred CCcCCccHHHHHHcCCcEEEeCCCCCccce--eccC--CCccccceecCCHHHHHHHHHH-HHccCHHHHHHHHHHHHHH
Q psy15555 386 NEHFGIGIVECMAAGLIMIAHKSGGPKMDI--VIED--PETCRNGFLACDEVEYAQTIKL-ILHLSQDTKTRISQNAVSS 460 (488)
Q Consensus 386 ~e~~g~~~lEa~a~G~PvI~~~~~~~~~ei--v~~~--~~~~~~g~~~~~~~~l~~~i~~-ll~~~~~~~~~~~~~a~~~ 460 (488)
|...=.+...|+|||..+.-|+. -. +... ..-+..-.++..+.+-+..+.+ ++. |++....+..++++.
T Consensus 320 ----GTAtEQavGLGkPvi~fPg~GPQ-y~pgFA~rQ~rLLG~sltlv~~~aq~a~~~~q~ll~-dp~r~~air~nGqrR 393 (412)
T COG4370 320 ----GTATEQAVGLGKPVIGFPGQGPQ-YNPGFAERQQRLLGASLTLVRPEAQAAAQAVQELLG-DPQRLTAIRHNGQRR 393 (412)
T ss_pred ----cchHHHhhccCCceeecCCCCCC-cChHHHHHHHHHhcceeeecCCchhhHHHHHHHHhc-ChHHHHHHHhcchhh
Confidence 55666788999999998775552 10 0000 0000112334444444555555 998 999999999999987
Q ss_pred H-hhcCHHHHHHHHH
Q psy15555 461 V-DRFSMEEFKNGFL 474 (488)
Q Consensus 461 ~-~~~s~~~~~~~~~ 474 (488)
+ +--...++++.+.
T Consensus 394 iGqaGaa~rIAe~l~ 408 (412)
T COG4370 394 IGQAGAARRIAEELG 408 (412)
T ss_pred ccCcchHHHHHHHHH
Confidence 7 5554444444443
No 195
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=92.86 E-value=8.6 Score=36.29 Aligned_cols=256 Identities=12% Similarity=0.128 Sum_probs=142.3
Q ss_pred CCcEEEecCC--ccchhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHHHHHHHHH
Q psy15555 159 QPDIYIDTMG--YAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFALLYS 236 (488)
Q Consensus 159 ~pDiii~~~~--~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (488)
+.||+|+... -+.....++ .+|.|++.++.......++...++++.. ...
T Consensus 73 ~lDVlIEmg~ql~~~~~~~~~-~~G~KvV~y~~GndYv~~~E~~lF~k~~----------~~~----------------- 124 (364)
T PF10933_consen 73 ELDVLIEMGAQLDPEWLDYMR-ARGGKVVSYRCGNDYVMDIESMLFNKPS----------GHL----------------- 124 (364)
T ss_pred cCCEEEEccCccCHHHHHHHH-HcCCeEEEEeCCchHHHHhhHHhcCCCC----------Ccc-----------------
Confidence 7999997752 223333444 7899999999877665555554444310 000
Q ss_pred HHhcccCEEEEcChhH---HHHHHHHhccCCceEEEcCCCCchhhhccCCCC------------CCCCeEEEEeeccCCC
Q psy15555 237 HVGKYSDIIMVNSSWT---EEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSK------------TDGPVKIISVAQFRPE 301 (488)
Q Consensus 237 ~~~~~~d~ii~~s~~~---~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~~------------~~~~~~i~~~g~~~~~ 301 (488)
..-...|.|.+.-+.+ +..+......| +.++|..-++..+....... ...+.+-++=-++.--
T Consensus 125 f~~~~yD~VW~lPq~~~~~~~yl~~l~r~P--v~~vP~iWsP~F~~~~~~~l~~~~~~FGY~p~~~~~RvavfEPNi~vv 202 (364)
T PF10933_consen 125 FNGAPYDEVWTLPQFENTCAPYLETLHRCP--VRVVPHIWSPRFLDQRIAQLPEHGLRFGYQPGRPGKRVAVFEPNISVV 202 (364)
T ss_pred CCCCCCceeEeccchhhhchHHHHHHhcCC--ceeeCccCCchhHHHHHHhhhhcCCccccccCCCCceEEEecCCceEE
Confidence 0123457777665533 34555554444 77777655544333221111 1112222222222222
Q ss_pred CChHHHHHHHHHhHHhhhhhccCc-eEEEEEecC-CCCCcHHHHHHHHHHHHhcCC--CCcEEEecCCChHHHHHHHHh-
Q psy15555 302 KDHPLQLRAMYQLRQIISEELWDN-LKLIFIGST-RNEEDEVCVKDMQDLCKHLSL--ENNVEFKVNLPYEDMKKEFSE- 376 (488)
Q Consensus 302 k~~~~ll~a~~~l~~~~~~~~~~~-~~l~ivG~~-~~~~~~~~~~~l~~~~~~~~l--~~~v~~~g~~~~~el~~~~~~- 376 (488)
|....=+-+..+.-+.. |+ +..+.+-.. ..++. .++...+..+.+ .....|.|.. +++.+++.
T Consensus 203 K~~~~PmLi~E~aYR~~-----P~~v~~~~V~Nt~~~ke~----~~F~~f~~~ldlvr~gkasfegR~---~~p~fla~~ 270 (364)
T PF10933_consen 203 KTCFIPMLICEEAYRAD-----PDAVEHVYVTNTYHLKEH----PTFVNFANSLDLVRDGKASFEGRF---DFPDFLAQH 270 (364)
T ss_pred eecCccHHHHHHHHHhC-----hhhcceEEEecchhhhcC----HHHHHHHHhhHHhhcCeeEEeeec---ChHHHHHhC
Confidence 43211122223333333 33 333333322 22222 344444444433 3457788886 45555544
Q ss_pred CcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHHHHccCHHHHHHHH
Q psy15555 377 GLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILHLSQDTKTRIS 454 (488)
Q Consensus 377 ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~~~~~~~~~~~ 454 (488)
.|++|.--+..+.-..-+|++.-|=|.|-.. ..+. ++|+..+ |..+=++++.+.+....+..+...
T Consensus 271 tD~VvSHqWeN~lNYlY~daLyggYPLVHNS------~~l~------d~GYYY~~fD~~~G~r~L~~A~~~HD~~~~~Y~ 338 (364)
T PF10933_consen 271 TDAVVSHQWENPLNYLYYDALYGGYPLVHNS------PLLK------DVGYYYPDFDAFEGARQLLRAIREHDADLDAYR 338 (364)
T ss_pred CCEEEeccccchhhHHHHHHHhcCCCcccCc------chhc------ccCcCCCCccHHHHHHHHHHHHHHccccHHHHH
Confidence 5788876676666667789999999988432 2333 3588877 888888888888776778888899
Q ss_pred HHHHHHHhhcCHHH
Q psy15555 455 QNAVSSVDRFSMEE 468 (488)
Q Consensus 455 ~~a~~~~~~~s~~~ 468 (488)
+++++.+.+++...
T Consensus 339 ~ra~~~l~~~~p~n 352 (364)
T PF10933_consen 339 ARARRLLDRLSPEN 352 (364)
T ss_pred HHHHHHHHhhCCCC
Confidence 99998887777654
No 196
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=92.83 E-value=0.57 Score=35.40 Aligned_cols=75 Identities=7% Similarity=0.042 Sum_probs=49.3
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEe---cCCChHH--HHHHHHhCcEEEEcCCCCcCCccH-----HHHH
Q psy15555 328 LIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFK---VNLPYED--MKKEFSEGLIGLHAMWNEHFGIGI-----VECM 397 (488)
Q Consensus 328 l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~---g~~~~~e--l~~~~~~ad~~v~~s~~e~~g~~~-----lEa~ 397 (488)
+.|+|+.. .+...+++.+++.|.. ..++ +.....+ +...+..||++|..... -+|.. -+|-
T Consensus 2 vliVGG~~-----~~~~~~~~~~~~~G~~--~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~--vsH~~~~~vk~~ak 72 (97)
T PF10087_consen 2 VLIVGGRE-----DRERRYKRILEKYGGK--LIHHGRDGGDEKKASRLPSKIKKADLVIVFTDY--VSHNAMWKVKKAAK 72 (97)
T ss_pred EEEEcCCc-----ccHHHHHHHHHHcCCE--EEEEecCCCCccchhHHHHhcCCCCEEEEEeCC--cChHHHHHHHHHHH
Confidence 56788754 3347889999998864 4444 3333344 99999999966554422 13332 3677
Q ss_pred HcCCcEEEeCCCCC
Q psy15555 398 AAGLIMIAHKSGGP 411 (488)
Q Consensus 398 a~G~PvI~~~~~~~ 411 (488)
..|+|++.++..+.
T Consensus 73 k~~ip~~~~~~~~~ 86 (97)
T PF10087_consen 73 KYGIPIIYSRSRGV 86 (97)
T ss_pred HcCCcEEEECCCCH
Confidence 78999999986554
No 197
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=90.31 E-value=14 Score=33.63 Aligned_cols=85 Identities=14% Similarity=0.028 Sum_probs=52.0
Q ss_pred HHHHhcCCCC-c-EEEecCCChHHHHHHHHhCc--EEEEcCCCCcCC--ccHHHHHHcCCcEEEeCCCCCccceeccCCC
Q psy15555 348 DLCKHLSLEN-N-VEFKVNLPYEDMKKEFSEGL--IGLHAMWNEHFG--IGIVECMAAGLIMIAHKSGGPKMDIVIEDPE 421 (488)
Q Consensus 348 ~~~~~~~l~~-~-v~~~g~~~~~el~~~~~~ad--~~v~~s~~e~~g--~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~ 421 (488)
+.+.++|++. + +-..|..+.+.=.++++..+ ++|.--..+.+| -++--|..+|+|||.-.-+...
T Consensus 165 ~~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~--------- 235 (256)
T TIGR00715 165 AQALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQTI--------- 235 (256)
T ss_pred HHHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCCC---------
Confidence 3667777753 3 44456666665567777666 444432333333 3566788889999998764321
Q ss_pred ccccceecCCHHHHHHHHHHHH
Q psy15555 422 TCRNGFLACDEVEYAQTIKLIL 443 (488)
Q Consensus 422 ~~~~g~~~~~~~~l~~~i~~ll 443 (488)
...-.+.+.+++.+.+.+++
T Consensus 236 --~~~~~~~~~~el~~~l~~~~ 255 (256)
T TIGR00715 236 --PGVAIFDDISQLNQFVARLL 255 (256)
T ss_pred --CCCccCCCHHHHHHHHHHhc
Confidence 11244668888888887654
No 198
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=90.08 E-value=2.5 Score=41.65 Aligned_cols=129 Identities=19% Similarity=0.181 Sum_probs=56.7
Q ss_pred cEEEEeccC----------CCCCCCceehHHHHHHHHHHhC----------CCeeEEEEeCC-CCCChhHHHHHhhhhcc
Q psy15555 53 KTVAFFHPY----------CNAGGGGERVLWTAVLALHQKY----------PDYKIYIYTGD-VDASPSEIIKRAHQRFN 111 (488)
Q Consensus 53 ~rI~~~~~~----------~~~~gG~e~~~~~l~~~L~~~~----------~~~~v~~~~~~-~~~~~~~~~~~~~~~~~ 111 (488)
-+|+++++. .+.+||-..++.+++++|.+.. -..+|.+.|.- ++.....+-+......+
T Consensus 273 f~vvliSpHG~f~q~nvLG~pDTGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~g 352 (550)
T PF00862_consen 273 FNVVLISPHGYFGQENVLGRPDTGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKVSG 352 (550)
T ss_dssp SEEEEE--SS--STTSTTSSTTSSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEETT
T ss_pred EEEEEEcCccccccccccCCCCCCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccccCC
Confidence 367776542 1245566688999999997641 12345565542 11111111111111111
Q ss_pred cccCCCeeEEEEeeccc-------eeec-cCchhHHHHHHHHHHHHHHHHHhh--hcCCcEEEecCCccchhh-hhhhhC
Q psy15555 112 IVLPDQVINFVYLYRRK-------FVEA-SLYPYFTLLGQSIGSMILGVEALL--SFQPDIYIDTMGYAFTYP-LFSYIG 180 (488)
Q Consensus 112 ~~~~~~~v~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~l~--~~~pDiii~~~~~~~~~~-~~~~~~ 180 (488)
..+ ..++++|.+. |+.+ ..|+++..+..-. ...+.. ...||+||.+..-.+..+ +++.+-
T Consensus 353 ---t~~-a~IlRvPF~~~~gi~~kwisrf~lWPyLe~fa~d~-----~~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~l 423 (550)
T PF00862_consen 353 ---TEN-ARILRVPFGPEKGILRKWISRFDLWPYLEEFADDA-----EREILAELQGKPDLIIGNYSDGNLVASLLSRKL 423 (550)
T ss_dssp ---ESS-EEEEEE-ESESTEEE-S---GGG-GGGHHHHHHHH-----HHHHHHHHTS--SEEEEEHHHHHHHHHHHHHHH
T ss_pred ---CCC-cEEEEecCCCCcchhhhccchhhchhhHHHHHHHH-----HHHHHHHhCCCCcEEEeccCcchHHHHHHHhhc
Confidence 123 5566665543 3332 3455554332211 111222 357999987754344433 334466
Q ss_pred CCeeEEEEeC
Q psy15555 181 GSKVACYIHY 190 (488)
Q Consensus 181 ~~~~v~~~h~ 190 (488)
++|....-|.
T Consensus 424 gv~~~~iaHs 433 (550)
T PF00862_consen 424 GVTQCFIAHS 433 (550)
T ss_dssp T-EEEEE-SS
T ss_pred CCceehhhhc
Confidence 8898888884
No 199
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=86.59 E-value=1.1 Score=42.07 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=36.5
Q ss_pred HHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCC-cEEEeCC-CCCcccee
Q psy15555 368 EDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGL-IMIAHKS-GGPKMDIV 416 (488)
Q Consensus 368 ~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~-PvI~~~~-~~~~~eiv 416 (488)
.+..+.|+.|...+.|.....+..-++|||++|| |||.++. .-++++++
T Consensus 228 ~~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~l 278 (302)
T PF03016_consen 228 SEYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVL 278 (302)
T ss_pred hHHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCcccCCccccc
Confidence 5688999999977777766668889999999998 5665554 33444555
No 200
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=83.63 E-value=14 Score=33.90 Aligned_cols=92 Identities=20% Similarity=0.133 Sum_probs=57.1
Q ss_pred CCcEEEecC-Cccchhh-hhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHHHHHHHHH
Q psy15555 159 QPDIYIDTM-GYAFTYP-LFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFALLYS 236 (488)
Q Consensus 159 ~pDiii~~~-~~~~~~~-~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (488)
+.||+|+.+ ++..++. .++...|.|.+++-|.-.. ..+.........+ ......+..+.+.+..+.+
T Consensus 172 ~advyHsvstGyAgl~g~~~k~~~g~P~lLTEHGIY~--------RER~~ei~~a~w~---~~~~~~r~~wi~~f~~l~~ 240 (268)
T PF11997_consen 172 KADVYHSVSTGYAGLLGALAKYRYGRPFLLTEHGIYT--------REREIEILQADWI---WESPYVRDLWIRFFESLSR 240 (268)
T ss_pred CCCEEecCCccHHHHHHHHHHHHhCCCEEEecCCccH--------HHHHHHHHhcccc---cchHHHHHHHHHHHHHHHH
Confidence 357999554 5555544 3455779999999996542 1111111111100 0124555666677777888
Q ss_pred HHhcccCEEEEcChhHHHHHHHHhc
Q psy15555 237 HVGKYSDIIMVNSSWTEEHVIQLWN 261 (488)
Q Consensus 237 ~~~~~~d~ii~~s~~~~~~~~~~~~ 261 (488)
.+.+.||.|+..++..++.-.+.+.
T Consensus 241 ~~Y~~Ad~I~~l~~~n~~~q~~~Ga 265 (268)
T PF11997_consen 241 LAYRAADRITPLYEYNREWQIELGA 265 (268)
T ss_pred HHHHhhCeecccchhhHHHHHHhCC
Confidence 8899999999999987766666544
No 201
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=83.29 E-value=0.99 Score=35.93 Aligned_cols=44 Identities=9% Similarity=0.120 Sum_probs=30.5
Q ss_pred HHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCC
Q psy15555 368 EDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGP 411 (488)
Q Consensus 368 ~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~ 411 (488)
+++.+++..+|++|-.|..+..--.+-.++.+|+|+|++..|..
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~ 102 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFS 102 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSH
T ss_pred hhHHHhcccCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCC
Confidence 56888888899998887655555566778889999999877654
No 202
>KOG3339|consensus
Probab=82.79 E-value=19 Score=30.35 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=22.2
Q ss_pred cccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 51 VLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 51 ~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
++..+..+. + .||-..-+..|.+.|.+.+-.-.+ +...+
T Consensus 37 ~s~~~lVvl---G-SGGHT~EMlrLl~~l~~~y~~r~y-I~a~t 75 (211)
T KOG3339|consen 37 KSLSTLVVL---G-SGGHTGEMLRLLEALQDLYSPRSY-IAADT 75 (211)
T ss_pred CcceEEEEE---c-CCCcHHHHHHHHHHHHhhcCceEE-EEecC
Confidence 344666543 2 233445678888999888744443 34433
No 203
>KOG1021|consensus
Probab=82.57 E-value=21 Score=35.76 Aligned_cols=87 Identities=14% Similarity=0.155 Sum_probs=57.5
Q ss_pred HHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCC-cEEEeCC-CCCccceeccCCCccccceecCCHHHHHHHHHHHH-c
Q psy15555 368 EDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGL-IMIAHKS-GGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLIL-H 444 (488)
Q Consensus 368 ~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~-PvI~~~~-~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll-~ 444 (488)
....+.++.|...+.|...+...-.++||+.+|| |||.++. ..++.+.++-. .-++.++ .+++-+.+.+.| .
T Consensus 335 ~~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~----~fSV~v~-~~~v~~~~~~iL~~ 409 (464)
T KOG1021|consen 335 LNYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWT----EFSVFVP-EKDVPELIKNILLS 409 (464)
T ss_pred chHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCccce----EEEEEEE-HHHhhhHHHHHHHh
Confidence 5778889999998999988888889999999997 7777776 34443333322 3445555 555555534433 3
Q ss_pred cCHHHHHHHHHHHHH
Q psy15555 445 LSQDTKTRISQNAVS 459 (488)
Q Consensus 445 ~~~~~~~~~~~~a~~ 459 (488)
...+...+|.++...
T Consensus 410 i~~~~~~~m~~~v~~ 424 (464)
T KOG1021|consen 410 IPEEEVLRMRENVIR 424 (464)
T ss_pred cCHHHHHHHHHHHHH
Confidence 344555666666554
No 204
>KOG3349|consensus
Probab=82.51 E-value=10 Score=30.83 Aligned_cols=97 Identities=12% Similarity=0.047 Sum_probs=58.8
Q ss_pred CeEEEEeeccCCCCChHHHHHH------HHHhHHhhhhhccCceEEEE-EecC-CCCCcHHHHHHHHHHHHhcCCCCcEE
Q psy15555 289 PVKIISVAQFRPEKDHPLQLRA------MYQLRQIISEELWDNLKLIF-IGST-RNEEDEVCVKDMQDLCKHLSLENNVE 360 (488)
Q Consensus 289 ~~~i~~~g~~~~~k~~~~ll~a------~~~l~~~~~~~~~~~~~l~i-vG~~-~~~~~~~~~~~l~~~~~~~~l~~~v~ 360 (488)
..+++.+|+-. .+.++.+ ...|.+.+ =.+|+| .|+| +.-+ +......+..|+ .|.
T Consensus 4 ~~vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~G------~~kLiiQ~Grg~~~~~-----d~~~~~~k~~gl--~id 66 (170)
T KOG3349|consen 4 MTVFVTVGTTS----FDDLISCVLSEEFLQELQKRG------FTKLIIQIGRGQPFFG-----DPIDLIRKNGGL--TID 66 (170)
T ss_pred eEEEEEecccc----HHHHHHHHcCHHHHHHHHHcC------ccEEEEEecCCccCCC-----CHHHhhcccCCe--EEE
Confidence 45778888643 5555544 33444432 335555 7887 3221 222222233333 255
Q ss_pred EecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCC
Q psy15555 361 FKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 361 ~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~ 408 (488)
...+- .++.+.++.||++|+- ++.-+.+|-+..|+|.|+-.+
T Consensus 67 ~y~f~--psl~e~I~~AdlVIsH----AGaGS~letL~l~KPlivVvN 108 (170)
T KOG3349|consen 67 GYDFS--PSLTEDIRSADLVISH----AGAGSCLETLRLGKPLIVVVN 108 (170)
T ss_pred EEecC--ccHHHHHhhccEEEec----CCcchHHHHHHcCCCEEEEeC
Confidence 55555 7888999999988852 334589999999999998654
No 205
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=82.21 E-value=15 Score=29.45 Aligned_cols=103 Identities=14% Similarity=0.195 Sum_probs=62.7
Q ss_pred HHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCcc
Q psy15555 344 KDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETC 423 (488)
Q Consensus 344 ~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~ 423 (488)
++..+.+++ +. .|.+.+..+.+++.+.+..+|+++..+.. .+.-.+++.+ -++..|++...|.- .+--+ ...
T Consensus 9 ~~~~~~l~~-~~--~v~~~~~~~~~~~~~~l~~~d~ii~~~~~-~~~~~~l~~~-~~Lk~I~~~~~G~d-~id~~--~a~ 80 (133)
T PF00389_consen 9 DEEIERLEE-GF--EVEFCDSPSEEELAERLKDADAIIVGSGT-PLTAEVLEAA-PNLKLISTAGAGVD-NIDLE--AAK 80 (133)
T ss_dssp HHHHHHHHH-TS--EEEEESSSSHHHHHHHHTTESEEEESTTS-TBSHHHHHHH-TT-SEEEESSSSCT-TB-HH--HHH
T ss_pred HHHHHHHHC-Cc--eEEEeCCCCHHHHHHHhCCCeEEEEcCCC-CcCHHHHhcc-ceeEEEEEcccccC-cccHH--HHh
Confidence 334444444 43 68888888899999999999988865433 4667788888 88899988776652 32111 112
Q ss_pred ccceecC-----CHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy15555 424 RNGFLAC-----DEVEYAQTIKLILHLSQDTKTRISQNAV 458 (488)
Q Consensus 424 ~~g~~~~-----~~~~l~~~i~~ll~~~~~~~~~~~~~a~ 458 (488)
..|+.+. +.++.++.. .. ..+.+.++.+.+.
T Consensus 81 ~~gI~V~n~~g~~~~aVAE~a---~~-T~e~~~~~~~~~~ 116 (133)
T PF00389_consen 81 ERGIPVTNVPGYNAEAVAEHA---GY-TDEARERMAEIAA 116 (133)
T ss_dssp HTTSEEEE-TTTTHHHHHHHH---TG-BHHHHHHHHHHHH
T ss_pred hCeEEEEEeCCcCCcchhccc---hh-HHHHHHHHHHHHH
Confidence 4566653 444555544 22 4555555554443
No 206
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=81.14 E-value=51 Score=31.33 Aligned_cols=136 Identities=12% Similarity=0.019 Sum_probs=72.3
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC----CChHHHH----HHHHhCcEEEEcC--CCCcCCccH
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN----LPYEDMK----KEFSEGLIGLHAM--WNEHFGIGI 393 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~----~~~~el~----~~~~~ad~~v~~s--~~e~~g~~~ 393 (488)
.+-++.++|.| +..+...+...+.|. .++.+... ++.+++. .+...+|+++..| ..-..++..
T Consensus 173 ~~k~vLvIGaG------em~~l~a~~L~~~g~-~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~ 245 (338)
T PRK00676 173 KKASLLFIGYS------EINRKVAYYLQRQGY-SRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLS 245 (338)
T ss_pred cCCEEEEEccc------HHHHHHHHHHHHcCC-CEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceee
Confidence 35577777877 444555555555564 24444433 2345444 6677999888753 233335555
Q ss_pred HHHHHcCCcEEEeCCCCCcccee--ccCCCccccceecCCHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHH
Q psy15555 394 VECMAAGLIMIAHKSGGPKMDIV--IEDPETCRNGFLACDEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKN 471 (488)
Q Consensus 394 lEa~a~G~PvI~~~~~~~~~eiv--~~~~~~~~~g~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~ 471 (488)
.|.+..-.+-+.-|..-++ ++- ... .+..++ |.|++.+.+.+ +.+.|++....+...+ +..+.
T Consensus 246 ~~~~~~~~~r~~iDLAvPR-dId~v~~~----~~v~Ly-~iDdL~~i~~~----n~~~R~~~~~~ae~iI-----~~~~~ 310 (338)
T PRK00676 246 WESLADIPDRIVFDFNVPR-TFPWSETP----FPHRYL-DMDFISEWVQK----HLQCRKEVNNKHKLSL-----REAAY 310 (338)
T ss_pred HHHHhhccCcEEEEecCCC-CCcccccc----CCcEEE-EhHHHHHHHHH----HHHHHHHHHHHHHHHH-----HHHHH
Confidence 5655432223555554443 442 111 222333 77777776665 4445666666665444 44556
Q ss_pred HHHHHHHHhh
Q psy15555 472 GFLTFTQPLF 481 (488)
Q Consensus 472 ~~~~~~~~~~ 481 (488)
++.+.|++=.
T Consensus 311 ~~~~~~~~~~ 320 (338)
T PRK00676 311 KQWESYEKKL 320 (338)
T ss_pred HHHHHHHHHH
Confidence 6666666533
No 207
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=80.83 E-value=1.7 Score=27.93 Aligned_cols=12 Identities=33% Similarity=0.393 Sum_probs=10.3
Q ss_pred CceecccchhHH
Q psy15555 1 MFCCLWKSVVMW 12 (488)
Q Consensus 1 ~~~~~~~~~~~~ 12 (488)
|-||+|.|.+.-
T Consensus 1 m~c~rc~~~p~d 12 (61)
T PF06692_consen 1 MACCRCDSAPGD 12 (61)
T ss_pred CcccccCCCCcc
Confidence 889999999863
No 208
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=80.51 E-value=33 Score=29.88 Aligned_cols=84 Identities=20% Similarity=0.248 Sum_probs=55.9
Q ss_pred EEEEEec-CCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCc-EEEEcC--------CCCc-CCccHHH
Q psy15555 327 KLIFIGS-TRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGL-IGLHAM--------WNEH-FGIGIVE 395 (488)
Q Consensus 327 ~l~ivG~-~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad-~~v~~s--------~~e~-~g~~~lE 395 (488)
+..+++. +...+...|.++.++..+++|+.-.=.-+...|.+++.+.+..+| +.|++. +.|. .-..+.|
T Consensus 34 ~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNTF~LL~~lke~gld~iIr~ 113 (224)
T COG3340 34 TIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNTFNLLQELKETGLDDIIRE 113 (224)
T ss_pred eEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchHHHHHHHHHHhCcHHHHHH
Confidence 5566663 334455578899999999998753222334447799999999999 455442 1122 1234679
Q ss_pred HHHcCCcEEEeCCCC
Q psy15555 396 CMAAGLIMIAHKSGG 410 (488)
Q Consensus 396 a~a~G~PvI~~~~~~ 410 (488)
....|+|.|....|.
T Consensus 114 ~vk~G~~YiG~SAGA 128 (224)
T COG3340 114 RVKAGTPYIGWSAGA 128 (224)
T ss_pred HHHcCCceEEeccCc
Confidence 999999999865553
No 209
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=80.36 E-value=26 Score=32.66 Aligned_cols=154 Identities=11% Similarity=0.063 Sum_probs=68.8
Q ss_pred HhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCC-CchhhhccCCCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHH
Q psy15555 238 VGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPC-DTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQ 316 (488)
Q Consensus 238 ~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~-d~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~ 316 (488)
.-...|.|++........+.+..... +-++..++ |+....-.......++. +.-+. ........++.++++.
T Consensus 56 ~~~~~DlIi~~gt~aa~~~~~~~~~~--iPVVf~~V~dp~~~~l~~~~~~~~~n-vTGv~---~~~~~~~~l~l~~~l~- 128 (294)
T PF04392_consen 56 KAQKPDLIIAIGTPAAQALAKHLKDD--IPVVFCGVSDPVGAGLVDSLDRPGKN-VTGVS---ERPPIEKQLELIKKLF- 128 (294)
T ss_dssp CCTS-SEEEEESHHHHHHHHHH-SS---S-EEEECES-TTTTTS-S-SSS--SS-EEEEE---E---HHHHHHHHHHHS-
T ss_pred hcCCCCEEEEeCcHHHHHHHHhcCCC--cEEEEEeccChhhhhccccccCCCCC-EEEEE---CCcCHHHHHHHHHHhC-
Confidence 34578999999988877777755432 33444454 32221111111111122 22222 2344555566666654
Q ss_pred hhhhhccCceEEE-EEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHH----hCcEEEEcCC---CCc
Q psy15555 317 IISEELWDNLKLI-FIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS----EGLIGLHAMW---NEH 388 (488)
Q Consensus 317 ~~~~~~~~~~~l~-ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~----~ad~~v~~s~---~e~ 388 (488)
|+++=+ ++-+..........+.+++.+++.|+. +....--+.+|+...+. ..|+++.+.. ...
T Consensus 129 -------P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~--l~~~~v~~~~~~~~~~~~l~~~~da~~~~~~~~~~~~ 199 (294)
T PF04392_consen 129 -------PDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIE--LVEIPVPSSEDLEQALEALAEKVDALYLLPDNLVDSN 199 (294)
T ss_dssp -------TT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-E--EEEEEESSGGGHHHHHHHHCTT-SEEEE-S-HHHHHT
T ss_pred -------CCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCE--EEEEecCcHhHHHHHHHHhhccCCEEEEECCcchHhH
Confidence 554433 333221111234557888888888874 33222223356555554 5675555431 122
Q ss_pred CCccHHHHHHcCCcEEEeC
Q psy15555 389 FGIGIVECMAAGLIMIAHK 407 (488)
Q Consensus 389 ~g~~~lEa~a~G~PvI~~~ 407 (488)
+......+...++||+++.
T Consensus 200 ~~~i~~~~~~~~iPv~~~~ 218 (294)
T PF04392_consen 200 FEAILQLANEAKIPVFGSS 218 (294)
T ss_dssp HHHHHHHCCCTT--EEESS
T ss_pred HHHHHHHHHhcCCCEEECC
Confidence 2223445667899999864
No 210
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=79.25 E-value=67 Score=31.49 Aligned_cols=115 Identities=11% Similarity=0.128 Sum_probs=65.5
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCC--CcCCccHHH-HHHcCC
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWN--EHFGIGIVE-CMAAGL 401 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~--e~~g~~~lE-a~a~G~ 401 (488)
--.++|+.+.. +.-++++++++ ...++.+|+..++..+|+++..+.. ...+...+| ++.--+
T Consensus 202 ~~~i~IaNRT~--------erA~~La~~~~-------~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~ 266 (414)
T COG0373 202 VKKITIANRTL--------ERAEELAKKLG-------AEAVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRK 266 (414)
T ss_pred CCEEEEEcCCH--------HHHHHHHHHhC-------CeeecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhccc
Confidence 35788899875 55666677665 2234669999999999977765432 223333444 444444
Q ss_pred cEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q psy15555 402 IMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILHLSQDTKTRISQNAVSSV 461 (488)
Q Consensus 402 PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~ 461 (488)
..+..|.+-++ ++-.+- ..-.|+.+-|.|+|.....+ +.+.|++..+.+...+
T Consensus 267 ~~livDiavPR-die~~v--~~l~~v~l~~iDDL~~iv~~----n~~~R~~~~~~ae~iI 319 (414)
T COG0373 267 RLLIVDIAVPR-DVEPEV--GELPNVFLYTIDDLEEIVEE----NLEARKEEAAKAEAII 319 (414)
T ss_pred CeEEEEecCCC-CCCccc--cCcCCeEEEehhhHHHHHHH----hHHHHHHHHHHHHHHH
Confidence 45667766554 443321 11123333366666655554 4445666655555444
No 211
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=76.75 E-value=33 Score=31.15 Aligned_cols=108 Identities=12% Similarity=0.059 Sum_probs=63.9
Q ss_pred eeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC-----CChHH
Q psy15555 295 VAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN-----LPYED 369 (488)
Q Consensus 295 ~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-----~~~~e 369 (488)
+|.-+...+-..+++.+-++... ++.++.+++.-.. +..++.+...+..+++|.. .+..+.- .+.++
T Consensus 4 iGG~~~~~~~~~i~~~~~~lag~------~~~rI~~iptAS~-~~~~~~~~~~~~~~~lG~~-~v~~l~i~~r~~a~~~~ 75 (250)
T TIGR02069 4 IGGAEDKVGDREILREFVSRAGG------EDAIIVIITSASE-EPREVGERYITIFSRLGVK-EVKILDVREREDASDEN 75 (250)
T ss_pred EeCccccCChHHHHHHHHHHhCC------CCceEEEEeCCCC-ChHHHHHHHHHHHHHcCCc-eeEEEecCChHHccCHH
Confidence 34333333444467777555533 4668888885432 3346677888888888874 3444432 23356
Q ss_pred HHHHHHhCc-EEEEcCC-------CCcCC--ccHHHHHHcCCcEEEeCCCC
Q psy15555 370 MKKEFSEGL-IGLHAMW-------NEHFG--IGIVECMAAGLIMIAHKSGG 410 (488)
Q Consensus 370 l~~~~~~ad-~~v~~s~-------~e~~g--~~~lEa~a~G~PvI~~~~~~ 410 (488)
..+.+..|| +++.+-. ....+ ..+-|+...|+|++.+..|.
T Consensus 76 ~~~~l~~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA 126 (250)
T TIGR02069 76 AIALLSNATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGA 126 (250)
T ss_pred HHHHHhhCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHH
Confidence 778899999 4454321 12222 23557888898887765543
No 212
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=75.89 E-value=18 Score=28.50 Aligned_cols=72 Identities=8% Similarity=0.008 Sum_probs=38.8
Q ss_pred HHHHHHHhCcEEEEc--CCCCcCC--ccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHH
Q psy15555 369 DMKKEFSEGLIGLHA--MWNEHFG--IGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLIL 443 (488)
Q Consensus 369 el~~~~~~ad~~v~~--s~~e~~g--~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll 443 (488)
.-..++..||++|.- -.+.-+. +-.-=|.|.|+|.|+-...... .-+++- +..+-.+++++++..+.+..++
T Consensus 65 RT~~li~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~lh~~~~~-HpLKEv--da~A~a~~et~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 65 RTRTLIEKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITLHPEELH-HPLKEV--DAAALAVAETPEQVVEILRYVL 140 (141)
T ss_pred HHHHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhcc-ccHHHH--hHhhHhhhCCHHHHHHHHHHHh
Confidence 345688999966542 1111111 1123468899999996553332 112211 1122344568888888777654
No 213
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=73.45 E-value=15 Score=26.88 Aligned_cols=69 Identities=19% Similarity=0.147 Sum_probs=43.9
Q ss_pred CCeeEEEEeeccceeeccCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhh---hhhCCCeeEEEEeC
Q psy15555 116 DQVINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLF---SYIGGSKVACYIHY 190 (488)
Q Consensus 116 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~---~~~~~~~~v~~~h~ 190 (488)
.+|+.+.++|.........++-+ +..+...+.++.+++.||||.+...+.+...+ +..-|.+.+.+-|.
T Consensus 13 tngLKVYYlP~~~~~~~~t~Pt~------~~~~pl~R~IlirE~I~IVHgH~a~S~l~hE~i~hA~~mGlktVfTDHS 84 (90)
T PF08288_consen 13 TNGLKVYYLPLKVFYNQCTLPTL------FGSFPLLRNILIRERIDIVHGHQAFSTLCHEAILHARTMGLKTVFTDHS 84 (90)
T ss_pred CCCeEEEeecchhhhcCcchHHH------HHhhHHHHHHHHHcCeeEEEeehhhhHHHHHHHHHHHhCCCcEEeeccc
Confidence 44488888888766655555443 22334566777899999999776444433311 22458898887773
No 214
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=73.35 E-value=99 Score=30.52 Aligned_cols=113 Identities=8% Similarity=-0.032 Sum_probs=62.5
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEE
Q psy15555 326 LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIA 405 (488)
Q Consensus 326 ~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~ 405 (488)
-.+.++.+.+ +..++++++.+- .. ..+.+++...+..+|+++..+..+..=+. ..+.-+.|.+.
T Consensus 206 ~~I~V~nRt~--------~ra~~La~~~~~---~~---~~~~~~l~~~l~~aDiVI~aT~a~~~vi~--~~~~~~~~~~~ 269 (414)
T PRK13940 206 KQIMLANRTI--------EKAQKITSAFRN---AS---AHYLSELPQLIKKADIIIAAVNVLEYIVT--CKYVGDKPRVF 269 (414)
T ss_pred CEEEEECCCH--------HHHHHHHHHhcC---Ce---EecHHHHHHHhccCCEEEECcCCCCeeEC--HHHhCCCCeEE
Confidence 3688888875 334455554431 11 23458889999999988887654432222 23345789988
Q ss_pred eCCCCCccceeccCCCccccceecCCHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q psy15555 406 HKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILHLSQDTKTRISQNAVSSV 461 (488)
Q Consensus 406 ~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~ 461 (488)
-|..-++ ++-..- ..-.|...-|.+++.+.+.+ +.+.+++....|...+
T Consensus 270 iDLavPR-didp~v--~~l~~v~l~~iDdl~~i~~~----n~~~R~~~~~~a~~iI 318 (414)
T PRK13940 270 IDISIPQ-ALDPKL--GELEQNVYYCVDDINAVIED----NKDKRKYESSKAQKII 318 (414)
T ss_pred EEeCCCC-CCCccc--cCcCCeEEEeHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 8876554 443221 11124444467777665554 3333444444444433
No 215
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=73.23 E-value=8.7 Score=36.05 Aligned_cols=77 Identities=9% Similarity=0.081 Sum_probs=57.0
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEE
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMI 404 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI 404 (488)
+.--+++|.-......+-.+.+++++++.|....+...|.++.+.+..+ ..|+||..+-.+ +++.+.-..-+|||
T Consensus 213 ~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL~nf--~iD~fV~~aCPr---~sidd~~~f~kPvl 287 (308)
T TIGR03682 213 KKFGILVSTKKGQRRPELAEELKKLLEELGKEALLILLDNISPDQLRNL--DFDAYVNTACPR---IAIDDYARFKKPVL 287 (308)
T ss_pred CeEEEEEEccCcCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHhcC--CcCEEEEccCCC---cccccHhhCCCccc
Confidence 4456777866555666778899999999998888888999999888777 599999876443 24555566666766
Q ss_pred Ee
Q psy15555 405 AH 406 (488)
Q Consensus 405 ~~ 406 (488)
+.
T Consensus 288 TP 289 (308)
T TIGR03682 288 TP 289 (308)
T ss_pred CH
Confidence 53
No 216
>KOG2884|consensus
Probab=73.12 E-value=30 Score=30.00 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=29.9
Q ss_pred HHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHHc
Q psy15555 393 IVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILH 444 (488)
Q Consensus 393 ~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~ 444 (488)
+++-...-.|+|..+.++........+ -+.+-|+..++.-+|+-+|+--++
T Consensus 178 ~L~d~l~ssPii~ge~g~a~~~~~a~g-~~f~fgvdp~~DPELAlALRlSME 228 (259)
T KOG2884|consen 178 LLSDALLSSPIIQGEDGGAAAGLGANG-MDFEFGVDPEDDPELALALRLSME 228 (259)
T ss_pred cHHHHhhcCceeccCcccccccccccc-cccccCCCcccCHHHHHHHHhhHH
Confidence 566666778999887654433443333 222345555555578888875444
No 217
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=72.26 E-value=79 Score=28.92 Aligned_cols=192 Identities=13% Similarity=0.082 Sum_probs=90.3
Q ss_pred HhcccCEEEEcChhH---HHHHHHHhccC----CceEEEc---C---CCCchhhhccCCCCCCCCeEE---EEeeccCCC
Q psy15555 238 VGKYSDIIMVNSSWT---EEHVIQLWNCQ----LKTYKLY---P---PCDTEDLKKITHSKTDGPVKI---ISVAQFRPE 301 (488)
Q Consensus 238 ~~~~~d~ii~~s~~~---~~~~~~~~~~~----~k~~vi~---~---~~d~~~~~~~~~~~~~~~~~i---~~~g~~~~~ 301 (488)
+++.+|.|.+.|... +-.+..+++.. +++..++ | +.+.......-. .....+.. +|+||.+..
T Consensus 117 ~m~~~DvIfshs~~g~f~kv~m~~l~Ps~~~l~~~i~~~p~v~nfqpp~~i~~~Rstyw-kd~se~nmnv~~yigR~Tt~ 195 (355)
T PF11440_consen 117 TMNEMDVIFSHSDNGWFSKVLMKELLPSKVSLFDRIKKFPMVFNFQPPMDINKYRSTYW-KDVSEKNMNVNRYIGRQTTW 195 (355)
T ss_dssp HHHH-SEEEES-TTSHHHHTHHHHHS-SS--SSS-------EEE----B-HHHHHHHH----GGGSEEEEEEEE--SSGG
T ss_pred HHHhhcEEEeccccchHHHHHHHhhccccCchhhhhhhcceeeecCCcccHHHHHHHHh-hhhHhhhcccceeeeeeeee
Confidence 557789999988643 22333555433 1333322 2 233222221111 11123333 899999999
Q ss_pred CChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHH----------HHhcCC--CCcEEEecCCChHH
Q psy15555 302 KDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDL----------CKHLSL--ENNVEFKVNLPYED 369 (488)
Q Consensus 302 k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~----------~~~~~l--~~~v~~~g~~~~~e 369 (488)
||+..+++...+..+. ++.+-++-|-.... ..+.-...- +.+..+ ...+..+|..-++|
T Consensus 196 kG~~~mfD~h~~~lK~------~~~~t~~~GierS~---A~~~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E 266 (355)
T PF11440_consen 196 KGPRRMFDLHEKILKP------AGFKTIMEGIERSP---AKISIKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRSE 266 (355)
T ss_dssp G-HHHHHHHHHHTTTT------TT-EEEEE---SST---HHHHHHHTT--EEEE-CTGGGG---SSS--EEEESS--HHH
T ss_pred cCcHHHhhhHHHhcCC------cchhHHhhhhhcCC---ceeeeecCCcccccCccccccCcccCCCCcceecchhhhHH
Confidence 9999999999887665 67888887743321 221211110 001111 12367777777889
Q ss_pred HHHHHHhCcEEEEcCC------CCcCCccHHHHHHcCCcEEEeCC-CCCcc------ceeccCCCcccccee-cC--CHH
Q psy15555 370 MKKEFSEGLIGLHAMW------NEHFGIGIVECMAAGLIMIAHKS-GGPKM------DIVIEDPETCRNGFL-AC--DEV 433 (488)
Q Consensus 370 l~~~~~~ad~~v~~s~------~e~~g~~~lEa~a~G~PvI~~~~-~~~~~------eiv~~~~~~~~~g~~-~~--~~~ 433 (488)
+...++.+-.+..-+. .+..-.+-+|..|||.-.+.-.+ |.+.. .++.. ..|.+ ++ |.+
T Consensus 267 ~~~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~~~~~~-----~~~~I~~De~dle 341 (355)
T PF11440_consen 267 GLERMAKSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSWGENNRFTLDGTRYIDH-----PYSAIYFDENDLE 341 (355)
T ss_dssp HHHHHHTEEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHHHHHHSB-TTTSSBGGSS-------S-EEE-TTSHH
T ss_pred HHHHHhhccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeeccccccceeeecCceeecc-----CcceeEeccchHH
Confidence 9999999987665552 22344577999999987776332 22211 12222 23444 33 666
Q ss_pred HHHHHHHHHHc
Q psy15555 434 EYAQTIKLILH 444 (488)
Q Consensus 434 ~l~~~i~~ll~ 444 (488)
+-.+.|.++.+
T Consensus 342 ~T~ekl~E~a~ 352 (355)
T PF11440_consen 342 STVEKLIEVAN 352 (355)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 66666666654
No 218
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=71.66 E-value=37 Score=31.18 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=28.1
Q ss_pred HHHHHHHH--hCcEEEEcCC-CCcCCccHHHHHH--cCCcEEE
Q psy15555 368 EDMKKEFS--EGLIGLHAMW-NEHFGIGIVECMA--AGLIMIA 405 (488)
Q Consensus 368 ~el~~~~~--~ad~~v~~s~-~e~~g~~~lEa~a--~G~PvI~ 405 (488)
..+.+.++ .+|++|+.|. ...|.-.+++.|+ +..|+|.
T Consensus 95 ~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIF 137 (279)
T cd05312 95 KSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIF 137 (279)
T ss_pred CCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 46777777 7789999985 4456677888887 4677776
No 219
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=70.57 E-value=70 Score=31.68 Aligned_cols=114 Identities=8% Similarity=0.089 Sum_probs=63.2
Q ss_pred EEEeeccC-CCCChHHHHHHH-HHhHHhhhhhccCceEEEEEecCCCCCcHHHH-----HH-----------------HH
Q psy15555 292 IISVAQFR-PEKDHPLQLRAM-YQLRQIISEELWDNLKLIFIGSTRNEEDEVCV-----KD-----------------MQ 347 (488)
Q Consensus 292 i~~~g~~~-~~k~~~~ll~a~-~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~-----~~-----------------l~ 347 (488)
|+.+|..+ ...|-+.+|.++ ..|++.. |++.+.+.-+.|..+..-+- +. ++
T Consensus 3 i~i~G~~g~~N~GdeAil~~ii~~l~~~~-----p~~~i~v~S~~P~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 77 (426)
T PRK10017 3 LLILGNHTCGNRGDSAILRGLLDAINILN-----PHAEVDVMSRYPVSSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVK 77 (426)
T ss_pred EEEEccccCCCccHHHHHHHHHHHHHhhC-----CCCeEEEEecCccchhhhcccccccchhhhhhhhcccccccchhHH
Confidence 45556554 466777776664 5566666 89999999999865320000 00 11
Q ss_pred HHH-------------HhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcC---CCCcCCcc----HHHHHHcCCcEEEeC
Q psy15555 348 DLC-------------KHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAM---WNEHFGIG----IVECMAAGLIMIAHK 407 (488)
Q Consensus 348 ~~~-------------~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s---~~e~~g~~----~lEa~a~G~PvI~~~ 407 (488)
+.. ...|+..++.+... ..++.+.++.||++|.+. +.+.+|.. ++-|..+|+|++...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~g 155 (426)
T PRK10017 78 KVLRRRYQHQVLLSRVTDTGKLRNIAIAQG--FTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIG 155 (426)
T ss_pred HHHHhhhhHHHHHhhhccccccccccchhh--HHHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEEC
Confidence 111 11111111111111 257778899999777543 34444532 345678999999855
Q ss_pred C-CCCc
Q psy15555 408 S-GGPK 412 (488)
Q Consensus 408 ~-~~~~ 412 (488)
. -|+.
T Consensus 156 qsiGPf 161 (426)
T PRK10017 156 HSVGPF 161 (426)
T ss_pred CcCCCc
Confidence 4 3554
No 220
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=69.98 E-value=89 Score=28.64 Aligned_cols=106 Identities=10% Similarity=0.052 Sum_probs=64.6
Q ss_pred EEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecC--------CCCCcHHHHHHHHHHHHhcCCCCcEEEecC
Q psy15555 293 ISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGST--------RNEEDEVCVKDMQDLCKHLSLENNVEFKVN 364 (488)
Q Consensus 293 ~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~--------~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 364 (488)
+.++..-.-++.+.+++..+++++. ..+++..|.- -..-.++-.+.+++.+++.|++--....+.
T Consensus 29 ~~iaGPCsie~~~~~~~~A~~lk~~-------g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~ 101 (266)
T PRK13398 29 IIIAGPCAVESEEQMVKVAEKLKEL-------GVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDT 101 (266)
T ss_pred EEEEeCCcCCCHHHHHHHHHHHHHc-------CCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCCh
Confidence 3333334445778888888888874 4456666611 111124666889999999998744444444
Q ss_pred CChHHHHHHHHhCcEEEEcCCCCcCCccHH-HHHHcCCcEEEeCCC
Q psy15555 365 LPYEDMKKEFSEGLIGLHAMWNEHFGIGIV-ECMAAGLIMIAHKSG 409 (488)
Q Consensus 365 ~~~~el~~~~~~ad~~v~~s~~e~~g~~~l-Ea~a~G~PvI~~~~~ 409 (488)
..+..+...+|++-.+|.. .....++ ++...|+||+.++..
T Consensus 102 ---~~~~~l~~~vd~~kIga~~-~~n~~LL~~~a~~gkPV~lk~G~ 143 (266)
T PRK13398 102 ---RDVEEVADYADMLQIGSRN-MQNFELLKEVGKTKKPILLKRGM 143 (266)
T ss_pred ---hhHHHHHHhCCEEEECccc-ccCHHHHHHHhcCCCcEEEeCCC
Confidence 3444444558887777732 2223344 555679999998763
No 221
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=69.20 E-value=18 Score=26.01 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=46.2
Q ss_pred HhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCC---CCCCCeEEEEeeccCC
Q psy15555 238 VGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHS---KTDGPVKIISVAQFRP 300 (488)
Q Consensus 238 ~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~---~~~~~~~i~~~g~~~~ 300 (488)
+....|.|.+..+...+.+++.+. .++..+|-+.++..+.+.... ...-.--|.++|+.-.
T Consensus 15 i~~~~~~iFt~D~~~~~~~~~~G~--~~V~yLPLAa~~~~~~p~~~~~~~~~~~~~dIsFVG~~y~ 78 (79)
T PF12996_consen 15 IANSYDYIFTFDRSFVEEYRNLGA--ENVFYLPLAANPERFRPIPVDPEERKKYECDISFVGSLYP 78 (79)
T ss_pred hCCCCCEEEEECHHHHHHHHHcCC--CCEEEccccCCHHHhCcccCCcccccccCCCEEEeCcCcc
Confidence 457789999999999999999643 368999999999988877542 1223456888997643
No 222
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=68.75 E-value=38 Score=28.56 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=38.5
Q ss_pred CceEEEEEecCCCCCcHHH-HHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCC
Q psy15555 324 DNLKLIFIGSTRNEEDEVC-VKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNE 387 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~-~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e 387 (488)
.+-+.+|+|.| +. -..+.+.+.+.|. +|.+... +.+++.+.++.||++|..+...
T Consensus 43 ~gk~vlViG~G------~~~G~~~a~~L~~~g~--~V~v~~r-~~~~l~~~l~~aDiVIsat~~~ 98 (168)
T cd01080 43 AGKKVVVVGRS------NIVGKPLAALLLNRNA--TVTVCHS-KTKNLKEHTKQADIVIVAVGKP 98 (168)
T ss_pred CCCEEEEECCc------HHHHHHHHHHHhhCCC--EEEEEEC-CchhHHHHHhhCCEEEEcCCCC
Confidence 56789999998 32 2335566656553 4666665 4478999999999888776543
No 223
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=68.41 E-value=47 Score=30.28 Aligned_cols=87 Identities=10% Similarity=0.064 Sum_probs=59.4
Q ss_pred CCccHHHHHHcCCcEEEeCCC--CCccceeccCCCccccceecC-CHH--HHHHHHHHHHccCHHHHHHHHHHHHHHH-h
Q psy15555 389 FGIGIVECMAAGLIMIAHKSG--GPKMDIVIEDPETCRNGFLAC-DEV--EYAQTIKLILHLSQDTKTRISQNAVSSV-D 462 (488)
Q Consensus 389 ~g~~~lEa~a~G~PvI~~~~~--~~~~eiv~~~~~~~~~g~~~~-~~~--~l~~~i~~ll~~~~~~~~~~~~~a~~~~-~ 462 (488)
++-.+-=-|+|+-.|+..... ....+.+... ..=+-+. |.. +|.++|.-+.+ +++..++++++|++.+ +
T Consensus 157 ~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~----~HYvPv~~d~sd~~l~~~i~~~~~-~~~~a~~Ia~~~~~~~~~ 231 (256)
T smart00672 157 WSVRLKYILACDSVVLKVKPEYYEFFSRGLQPW----VHYWPIKSDLSCRELKEAVDWGNE-HDKKAQEIGKRGSEFIQQ 231 (256)
T ss_pred chhhHHHHHhcCceEEEeCCchhHHHHhcccCc----cceEEeeCCCchhhHHHHHHHHHh-CHHHHHHHHHHHHHHHHH
Confidence 344455568888888876632 1112333333 2222233 443 49999999988 9999999999999999 7
Q ss_pred hcCHHHHHHHHHHHHHHh
Q psy15555 463 RFSMEEFKNGFLTFTQPL 480 (488)
Q Consensus 463 ~~s~~~~~~~~~~~~~~~ 480 (488)
..+.+.+..-+..++.+.
T Consensus 232 ~L~~~~~~~Y~~~ll~ey 249 (256)
T smart00672 232 NLSMEDVYDYMFHLLQEY 249 (256)
T ss_pred HcCHHHHHHHHHHHHHHH
Confidence 788888888888777654
No 224
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=67.60 E-value=1.1e+02 Score=28.69 Aligned_cols=154 Identities=14% Similarity=0.102 Sum_probs=85.0
Q ss_pred HhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCC-CchhhhccCCCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHH
Q psy15555 238 VGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPC-DTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQ 316 (488)
Q Consensus 238 ~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~-d~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~ 316 (488)
..+.-|.++..+.-.++.+...... +-+++.++ |+....-......++. .+.-++.+ -....-+++++.+.
T Consensus 85 ~~~~~dviv~i~tp~Aq~~~s~~~~---iPVV~aavtd~v~a~Lv~~~~~pg~-NvTGvsD~---~~v~q~i~lik~~~- 156 (322)
T COG2984 85 VGDKPDVIVAIATPAAQALVSATKT---IPVVFAAVTDPVGAKLVKSLEQPGG-NVTGVSDL---LPVAQQIELIKALL- 156 (322)
T ss_pred hcCCCcEEEecCCHHHHHHHHhcCC---CCEEEEccCchhhccCCccccCCCC-ceeecCCc---chHHHHHHHHHHhC-
Confidence 4466799999998888888875442 23444443 2222211111111111 12222211 13555566666654
Q ss_pred hhhhhccCceEEEEEecCCCC-CcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHH----HHHHhCcEEEEcCC-C--Cc
Q psy15555 317 IISEELWDNLKLIFIGSTRNE-EDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMK----KEFSEGLIGLHAMW-N--EH 388 (488)
Q Consensus 317 ~~~~~~~~~~~l~ivG~~~~~-~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~----~~~~~ad~~v~~s~-~--e~ 388 (488)
|+++=+-+--.|.+ .+....+++++.++..|+. |+-..-.+-.|+. .+....|++..|.. . ..
T Consensus 157 -------Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~--vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~i~s~ 227 (322)
T COG2984 157 -------PNAKSIGVLYNPGEANSVSLVEELKKEARKAGLE--VVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNLIVSA 227 (322)
T ss_pred -------CCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCE--EEEEecCcccccHHHHHHhcCCCcEEEEecchHHHHH
Confidence 77775534333333 3445668899999999985 3222221224443 34466786666642 2 22
Q ss_pred CCccHHHHHHcCCcEEEeCC
Q psy15555 389 FGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 389 ~g~~~lEa~a~G~PvI~~~~ 408 (488)
+...+-+|...++|+++++.
T Consensus 228 ~~~l~~~a~~~kiPli~sd~ 247 (322)
T COG2984 228 IESLLQVANKAKIPLIASDT 247 (322)
T ss_pred HHHHHHHHHHhCCCeecCCH
Confidence 33456799999999999876
No 225
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=67.13 E-value=17 Score=32.70 Aligned_cols=49 Identities=6% Similarity=-0.050 Sum_probs=29.5
Q ss_pred ecCCChHHHHHHHH-----hCc-EEEEcCCCCcCCc-cHHHHHHcCCcEEEeCCCCC
Q psy15555 362 KVNLPYEDMKKEFS-----EGL-IGLHAMWNEHFGI-GIVECMAAGLIMIAHKSGGP 411 (488)
Q Consensus 362 ~g~~~~~el~~~~~-----~ad-~~v~~s~~e~~g~-~~lEa~a~G~PvI~~~~~~~ 411 (488)
++.++.+.+.+... .+| +|+.+........ .-+|.. .|+|||++|....
T Consensus 162 ia~i~p~~i~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~-lGkPVlsSNqat~ 217 (239)
T TIGR02990 162 MARISPDCIVEAALAAFDPDADALFLSCTALRAATCAQRIEQA-IGKPVVTSNQATA 217 (239)
T ss_pred eeecCHHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHH-HCCCEEEHHHHHH
Confidence 45567777777766 367 5665543332221 235554 6999999986443
No 226
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=66.46 E-value=72 Score=28.77 Aligned_cols=55 Identities=5% Similarity=-0.005 Sum_probs=38.1
Q ss_pred CCcEEEecC--CChHHHHHHHHhCc-EEEEcCCCCcCCcc--HHHHHHcCCcEEEeCCCC
Q psy15555 356 ENNVEFKVN--LPYEDMKKEFSEGL-IGLHAMWNEHFGIG--IVECMAAGLIMIAHKSGG 410 (488)
Q Consensus 356 ~~~v~~~g~--~~~~el~~~~~~ad-~~v~~s~~e~~g~~--~lEa~a~G~PvI~~~~~~ 410 (488)
.++|++.|. ++.+++.+....|| +++.++.....+.. +.+|-..|.|+|.-|...
T Consensus 150 rP~vV~FGE~~~~~~~~~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~ 209 (242)
T PTZ00408 150 RPHIVWFGEMPLYMDEIESVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEE 209 (242)
T ss_pred CCCEEEcCCCCCcHHHHHHHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCC
Confidence 567888877 36678888899999 44455544433432 456888999999877643
No 227
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=66.26 E-value=20 Score=31.45 Aligned_cols=78 Identities=14% Similarity=0.177 Sum_probs=54.3
Q ss_pred CChHHHHHHHHHhHHhhhhhccCce-EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEE
Q psy15555 302 KDHPLQLRAMYQLRQIISEELWDNL-KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIG 380 (488)
Q Consensus 302 k~~~~ll~a~~~l~~~~~~~~~~~~-~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~ 380 (488)
.+++..++.+.+.. ++. .++.= .. +...++-+++++.|....+.+.+..|-+.+..++...|++
T Consensus 71 ~~p~~~i~~fa~ag--------ad~It~H~E-~~------~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~V 135 (220)
T COG0036 71 ENPDRYIEAFAKAG--------ADIITFHAE-AT------EHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLV 135 (220)
T ss_pred CCHHHHHHHHHHhC--------CCEEEEEec-cC------cCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEE
Confidence 45677777777653 232 22221 22 3347788999999999899999999999999999999966
Q ss_pred EEcCCCCcCC-ccHH
Q psy15555 381 LHAMWNEHFG-IGIV 394 (488)
Q Consensus 381 v~~s~~e~~g-~~~l 394 (488)
+.-|-.+||| .+.+
T Consensus 136 llMsVnPGfgGQ~Fi 150 (220)
T COG0036 136 LLMSVNPGFGGQKFI 150 (220)
T ss_pred EEEeECCCCcccccC
Confidence 5556555554 4443
No 228
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=66.26 E-value=90 Score=30.46 Aligned_cols=105 Identities=14% Similarity=0.095 Sum_probs=66.9
Q ss_pred CCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCC
Q psy15555 287 DGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLP 366 (488)
Q Consensus 287 ~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 366 (488)
++..+++...+.+ +...++-.++++++++ |++.+++.-..|.. .+.+++.. +-...+.|++.=.
T Consensus 48 ~~p~vWiHaaSVG---Ev~a~~pLv~~l~~~~-----P~~~ilvTt~T~Tg-----~e~a~~~~---~~~v~h~YlP~D~ 111 (419)
T COG1519 48 EGPLVWIHAASVG---EVLAALPLVRALRERF-----PDLRILVTTMTPTG-----AERAAALF---GDSVIHQYLPLDL 111 (419)
T ss_pred CCCeEEEEecchh---HHHHHHHHHHHHHHhC-----CCCCEEEEecCccH-----HHHHHHHc---CCCeEEEecCcCc
Confidence 4566788777664 3445566677777887 89998887766532 13333333 2122344444422
Q ss_pred hHHHHHHHHhCc--EEEEcCCCCcCCccHHHHHHcCCcEEEeCC
Q psy15555 367 YEDMKKEFSEGL--IGLHAMWNEHFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 367 ~~el~~~~~~ad--~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~ 408 (488)
..-+..+++.-. +.|. +..|-+++.+.|+-..|+|++.-|.
T Consensus 112 ~~~v~rFl~~~~P~l~Ii-~EtElWPnli~e~~~~~~p~~LvNa 154 (419)
T COG1519 112 PIAVRRFLRKWRPKLLII-METELWPNLINELKRRGIPLVLVNA 154 (419)
T ss_pred hHHHHHHHHhcCCCEEEE-EeccccHHHHHHHHHcCCCEEEEee
Confidence 345566665544 4443 6789999999999999999998654
No 229
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=65.71 E-value=17 Score=36.62 Aligned_cols=77 Identities=8% Similarity=0.016 Sum_probs=56.1
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEE
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMI 404 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI 404 (488)
+.-=+|+|.-......+-.+.+++++++.|....+...|.++.+.|..+ ...|+||..+..+. ++.+.-.+-+|||
T Consensus 282 ~~~GIlVgTL~~q~~~~ii~~l~~li~~~GkK~yl~~vgkinpaKLaNF-~eID~fV~vaCPr~---sidd~~~F~KPVl 357 (496)
T TIGR00272 282 GCIGIVVGTLGVRNTRETINELRKMIKTAGKKHYLFVVGKPNPAKLANF-EDIDIFVLLGCSQS---GIIDSNEFYRPIV 357 (496)
T ss_pred CEEEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCC-CCCCEEEEccCCCc---ccccHhhCCCcee
Confidence 4556778876555666888999999999998888889999988888655 47999988764432 3344555556665
Q ss_pred E
Q psy15555 405 A 405 (488)
Q Consensus 405 ~ 405 (488)
+
T Consensus 358 T 358 (496)
T TIGR00272 358 T 358 (496)
T ss_pred c
Confidence 5
No 230
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=65.61 E-value=88 Score=27.31 Aligned_cols=108 Identities=8% Similarity=0.139 Sum_probs=61.6
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC-CChHHHHHHHHh--CcEEEEcCCCCc----CCccHHHHH
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN-LPYEDMKKEFSE--GLIGLHAMWNEH----FGIGIVECM 397 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-~~~~el~~~~~~--ad~~v~~s~~e~----~g~~~lEa~ 397 (488)
+++++++.+++ .....+++..+..+ .+...+. -+.++....+.. .|+++......+ .|..+++.+
T Consensus 3 ~~~Ilivdd~~-----~~~~~l~~~L~~~~---~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l 74 (216)
T PRK10840 3 NMNVIIADDHP-----IVLFGIRKSLEQIE---WVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYI 74 (216)
T ss_pred ceEEEEECCcH-----HHHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHH
Confidence 46778888775 44466677665543 2222222 133556665543 676665443322 466666665
Q ss_pred H---cCCcEEEeCCCCCc---cceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 398 A---AGLIMIAHKSGGPK---MDIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 398 a---~G~PvI~~~~~~~~---~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
. -++|||........ .+.++.+ ..|++.. +++++.+++..++.
T Consensus 75 ~~~~~~~~iIvls~~~~~~~~~~a~~~G----a~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 75 KRHFPSLSIIVLTMNNNPAILSAVLDLD----IEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred HHHCCCCcEEEEEecCCHHHHHHHHHCC----CeEEEECCCCHHHHHHHHHHHHC
Confidence 4 35677764332222 1234444 6678776 78999999988875
No 231
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=65.58 E-value=70 Score=28.12 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=52.8
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhc-CCCCcEEEecCCChHHHHHHHHhCcEEEEcCC---------CCc-CCcc
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHL-SLENNVEFKVNLPYEDMKKEFSEGLIGLHAMW---------NEH-FGIG 392 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~-~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~---------~e~-~g~~ 392 (488)
++.++.+++..+. +..++...+.+..+++ |.. +..+...+.++..+.+..||+++.+-- .+. +...
T Consensus 30 ~~~~i~~IptAs~-~~~~~~~~~~~a~~~l~G~~--~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~ 106 (212)
T cd03146 30 ARPKVLFVPTASG-DRDEYTARFYAAFESLRGVE--VSHLHLFDTEDPLDALLEADVIYVGGGNTFNLLAQWREHGLDAI 106 (212)
T ss_pred CCCeEEEECCCCC-CHHHHHHHHHHHHhhccCcE--EEEEeccCcccHHHHHhcCCEEEECCchHHHHHHHHHHcCHHHH
Confidence 4678889987665 3457778888888888 764 333333345677889999996666531 111 1112
Q ss_pred HHHHHHcCCcEEEeCCC
Q psy15555 393 IVECMAAGLIMIAHKSG 409 (488)
Q Consensus 393 ~lEa~a~G~PvI~~~~~ 409 (488)
+-|+...|+|++....|
T Consensus 107 l~~~~~~g~~i~G~SAG 123 (212)
T cd03146 107 LKAALERGVVYIGWSAG 123 (212)
T ss_pred HHHHHHCCCEEEEECHh
Confidence 33556679998886543
No 232
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=65.16 E-value=76 Score=29.55 Aligned_cols=87 Identities=9% Similarity=0.040 Sum_probs=53.7
Q ss_pred CCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcE
Q psy15555 300 PEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLI 379 (488)
Q Consensus 300 ~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~ 379 (488)
.+-|-+.+++++- .+-. ++..+++..+.| ++.. +.+ +|.-....+..++...+..+|+
T Consensus 10 ~N~GDe~~l~~~l--~~l~-----~~~~~~v~s~~p--------~~~~---~~~----~v~~~~r~~~~~~~~~l~~~D~ 67 (298)
T TIGR03609 10 GNLGDEALLAALL--RELP-----PGVEPTVLSNDP--------AETA---KLY----GVEAVNRRSLLAVLRALRRADV 67 (298)
T ss_pred CCcchHHHHHHHH--HhcC-----CCCeEEEecCCh--------HHHH---hhc----CceEEccCCHHHHHHHHHHCCE
Confidence 4456677777763 2222 678888888776 2222 222 3455556666789999999997
Q ss_pred EEEcC---CCCcCCc-c-------HHHHHHcCCcEEEeCC
Q psy15555 380 GLHAM---WNEHFGI-G-------IVECMAAGLIMIAHKS 408 (488)
Q Consensus 380 ~v~~s---~~e~~g~-~-------~lEa~a~G~PvI~~~~ 408 (488)
+|.+. +.+..+. . ..-|..+|+|++....
T Consensus 68 vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~ 107 (298)
T TIGR03609 68 VIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQ 107 (298)
T ss_pred EEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEec
Confidence 77654 2232222 1 2345668999988554
No 233
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=65.00 E-value=43 Score=30.28 Aligned_cols=38 Identities=11% Similarity=0.049 Sum_probs=29.6
Q ss_pred HHHHHHHH--hCcEEEEcCC-CCcCCccHHHHHH--cCCcEEE
Q psy15555 368 EDMKKEFS--EGLIGLHAMW-NEHFGIGIVECMA--AGLIMIA 405 (488)
Q Consensus 368 ~el~~~~~--~ad~~v~~s~-~e~~g~~~lEa~a--~G~PvI~ 405 (488)
.++.+..+ ..|++|+.|. ...|.--++++|+ +..|+|.
T Consensus 96 ~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIF 138 (254)
T cd00762 96 GDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIF 138 (254)
T ss_pred CCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEE
Confidence 46777888 8889999986 4557777888888 5678887
No 234
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=63.77 E-value=36 Score=30.99 Aligned_cols=93 Identities=15% Similarity=0.095 Sum_probs=51.8
Q ss_pred cccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeecccee
Q psy15555 51 VLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFV 130 (488)
Q Consensus 51 ~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 130 (488)
..++|+++- ++.|| ...++++.++-|+.+++-+..+...+.....+.
T Consensus 4 ~~~~IgvFD--SGVGG------LsVlrei~~~LP~e~~iY~~D~a~~PYG~ks~e------------------------- 50 (269)
T COG0796 4 PQPPIGVFD--SGVGG------LSVLREIRRQLPDEDIIYVGDTARFPYGEKSEE------------------------- 50 (269)
T ss_pred cCCeEEEEE--CCCCc------HHHHHHHHHHCCCCcEEEEecCCCCCCCCCCHH-------------------------
Confidence 357899874 44444 555688888888888776655533221100000
Q ss_pred eccCchhHHHHHHHHHHHHHHHHHhhhcCCcEE-E-ecCCccchhhhhhhhCCCeeEEEE
Q psy15555 131 EASLYPYFTLLGQSIGSMILGVEALLSFQPDIY-I-DTMGYAFTYPLFSYIGGSKVACYI 188 (488)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDii-i-~~~~~~~~~~~~~~~~~~~~v~~~ 188 (488)
.. ....+.+..++.+..++++ + +++.....+..++....+|++-.+
T Consensus 51 --------~I----~~~~~~i~~~l~~~~ik~lVIACNTASa~al~~LR~~~~iPVvGvi 98 (269)
T COG0796 51 --------EI----RERTLEIVDFLLERGIKALVIACNTASAVALEDLREKFDIPVVGVI 98 (269)
T ss_pred --------HH----HHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHhCCCCEEEec
Confidence 00 0001223344555559944 3 555566666777766688888755
No 235
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=63.60 E-value=69 Score=28.37 Aligned_cols=41 Identities=7% Similarity=0.022 Sum_probs=24.5
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCC
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDA 97 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~ 97 (488)
.||+|+- ++.. |...++--+..+.+.+. +.++.++++...-
T Consensus 3 vKiGiiK--lGNi-g~s~~idl~lDErAdRe-dI~vrv~gsGaKm 43 (277)
T PRK00994 3 VKIGIIK--LGNI-GMSPVIDLLLDERADRE-DIDVRVVGSGAKM 43 (277)
T ss_pred EEEEEEE--eccc-chHHHHHHHHHhhhccc-CceEEEeccCCCC
Confidence 4788874 3333 35566655666666653 7777777665433
No 236
>PRK04531 acetylglutamate kinase; Provisional
Probab=63.57 E-value=34 Score=33.47 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=33.6
Q ss_pred CeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEE-EecCCCCCcHHHHHHHHHHHHhcCCCCc
Q psy15555 289 PVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIF-IGSTRNEEDEVCVKDMQDLCKHLSLENN 358 (488)
Q Consensus 289 ~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~i-vG~~~~~~~~~~~~~l~~~~~~~~l~~~ 358 (488)
++.++-+|.-.-....+.+.+.++.+.+. ..++++ .|.+ .++.+..++.|++..
T Consensus 37 ~~~VIKiGG~~l~~~~~~l~~dla~L~~~-------G~~~VlVHGgg---------pqI~~~l~~~gie~~ 91 (398)
T PRK04531 37 RFAVIKVGGAVLRDDLEALASSLSFLQEV-------GLTPIVVHGAG---------PQLDAELDAAGIEKE 91 (398)
T ss_pred cEEEEEEChHHhhcCHHHHHHHHHHHHHC-------CCcEEEEECCC---------HHHHHHHHHcCCCcE
Confidence 45555555433223466777777777654 344454 4665 678888889988644
No 237
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=63.08 E-value=29 Score=32.63 Aligned_cols=46 Identities=26% Similarity=0.416 Sum_probs=27.6
Q ss_pred cEEEEeccCCCCCC-CceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHH
Q psy15555 53 KTVAFFHPYCNAGG-GGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEII 103 (488)
Q Consensus 53 ~rI~~~~~~~~~~g-G~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~ 103 (488)
||+.|+ .+.|| |=...+..++..++++ |.++++.+.++.+.-...+
T Consensus 1 ~r~~~~---~GKGGVGKTT~aaA~A~~~A~~--G~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 1 MRILFF---GGKGGVGKTTVAAALALALARR--GKRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp -SEEEE---EESTTSSHHHHHHHHHHHHHHT--TS-EEEEESSTTTHHHHHH
T ss_pred CeEEEE---ecCCCCCcHHHHHHHHHHHhhC--CCCeeEeecCCCccHHHHh
Confidence 677775 34444 2335555677777777 7888888888765443333
No 238
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=62.50 E-value=66 Score=25.53 Aligned_cols=71 Identities=13% Similarity=0.025 Sum_probs=37.3
Q ss_pred HHHHHHHhCcEEEEc--CCCCcCCccH---HHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHH
Q psy15555 369 DMKKEFSEGLIGLHA--MWNEHFGIGI---VECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLIL 443 (488)
Q Consensus 369 el~~~~~~ad~~v~~--s~~e~~g~~~---lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll 443 (488)
.-..++..||++|.- -.+..+ +.. -=|.|.|+|.|+-...... .-+.+- +..+-.+++++++..+.+..++
T Consensus 68 RT~~li~~aDvvVvrFGekYKQW-NaAfDAg~aaAlgKplI~lh~~~~~-HpLKEv--daaA~avaetp~Qvv~iL~Yv~ 143 (144)
T TIGR03646 68 RTRKLIEKADVVIALFGEKYKQW-NAAFDAGYAAALGKPLIILRPEELI-HPLKEV--DNKAQAVVETPEQAIETLKYIL 143 (144)
T ss_pred HHHHHHhhCCEEEEEechHHHHH-HHHhhHHHHHHcCCCeEEecchhcc-ccHHHH--hHHHHHHhcCHHHHHHHHHHhh
Confidence 345688899966542 111111 122 2467889999996543322 112111 0012234557887777776543
No 239
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=62.02 E-value=32 Score=33.28 Aligned_cols=95 Identities=9% Similarity=0.124 Sum_probs=53.3
Q ss_pred CCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcE-EEecCCC
Q psy15555 288 GPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNV-EFKVNLP 366 (488)
Q Consensus 288 ~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v-~~~g~~~ 366 (488)
+++.++.++. .++.+.+.+..+++. | +.+.+.+. +..+++++.... ..+ .+.|.
T Consensus 26 ~~f~VvaLaa---~~n~~~l~~q~~~f~--------p--~~v~i~~~------~~~~~l~~~l~~----~~~~v~~G~-- 80 (385)
T PRK05447 26 DRFRVVALSA---GKNVELLAEQAREFR--------P--KYVVVADE------EAAKELKEALAA----AGIEVLAGE-- 80 (385)
T ss_pred cccEEEEEEc---CCCHHHHHHHHHHhC--------C--CEEEEcCH------HHHHHHHHhhcc----CCceEEECh--
Confidence 3455555442 457665555444442 3 44555543 223445443321 123 34444
Q ss_pred hHHHHHHHHhC--cEEEEcCCCCcCCccHHHHHHcCCcEEEeCC
Q psy15555 367 YEDMKKEFSEG--LIGLHAMWNEHFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 367 ~~el~~~~~~a--d~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~ 408 (488)
+.+.++.+.. |++|.......+--..++|+..|++|.+.+-
T Consensus 81 -~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANK 123 (385)
T PRK05447 81 -EGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALANK 123 (385)
T ss_pred -hHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCH
Confidence 6677777755 7777665443333568999999999998654
No 240
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=61.92 E-value=16 Score=35.66 Aligned_cols=84 Identities=12% Similarity=0.063 Sum_probs=56.6
Q ss_pred cHHHHHHcCCcEEEeCCC--CCccceeccCCCccccceecC---CHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-hhcC
Q psy15555 392 GIVECMAAGLIMIAHKSG--GPKMDIVIEDPETCRNGFLAC---DEVEYAQTIKLILHLSQDTKTRISQNAVSSV-DRFS 465 (488)
Q Consensus 392 ~~lEa~a~G~PvI~~~~~--~~~~eiv~~~~~~~~~g~~~~---~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~-~~~s 465 (488)
.+-=-|+||-.|+..+.. ..+.+.+... ..-+-+. |.++|.++|..+.+ +++..++++++|++.+ +..+
T Consensus 229 RlkylL~c~SvVl~~~~~~~e~f~~~L~P~----vHYVPV~~~~d~sdL~~~v~w~~~-~~~~A~~IA~~g~~f~~~~L~ 303 (395)
T PF05686_consen 229 RLKYLLACNSVVLKVKSPYYEFFYRALKPW----VHYVPVKRDDDLSDLEEKVEWLNA-HDDEAQRIAENGQRFAREYLT 303 (395)
T ss_pred hHHHHHcCCceEEEeCCcHHHHHHhhhccc----ccEEEeccccchhhHHHHhhhccc-ChHHHHHHHHHHHHHHHHHhh
Confidence 344447777777775432 1111233333 2222232 67899999988887 9999999999999998 8888
Q ss_pred HHHHHHHHHHHHHHh
Q psy15555 466 MEEFKNGFLTFTQPL 480 (488)
Q Consensus 466 ~~~~~~~~~~~~~~~ 480 (488)
.+.+..-+..++.+.
T Consensus 304 ~~~~~~Y~~~LL~eY 318 (395)
T PF05686_consen 304 MEDVYCYWRRLLLEY 318 (395)
T ss_pred hhHHHHHHHHHHHHH
Confidence 888887777776654
No 241
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=61.57 E-value=1.1e+02 Score=27.71 Aligned_cols=116 Identities=12% Similarity=0.102 Sum_probs=66.5
Q ss_pred HHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCCCC-CCCeEEEEeeccCCCCChHHHHHHHHHh
Q psy15555 236 SHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKT-DGPVKIISVAQFRPEKDHPLQLRAMYQL 314 (488)
Q Consensus 236 ~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~~~-~~~~~i~~~g~~~~~k~~~~ll~a~~~l 314 (488)
+.+++.||.|+..+-.+.-..+..++.+.+. --+|+|.-. ..-+... ++..++++.|. .+.+-+|...+
T Consensus 59 ~~~i~~A~li~pDG~gvV~~ar~~~g~~~~~--rv~G~Dl~~--~Ll~~a~~~~~~vfllGgk------p~V~~~a~~~l 128 (253)
T COG1922 59 REILNQADLILPDGIGVVRAARRLLGQPLPE--RVAGTDLVE--ALLKRAAEEGKRVFLLGGK------PGVAEQAAAKL 128 (253)
T ss_pred HHHHhhcCEEccCchhHHHHHHHHhCccCcc--cCChHHHHH--HHHHHhCccCceEEEecCC------HHHHHHHHHHH
Confidence 3467889999999999988887777755321 224554322 1111111 23445554442 33557788888
Q ss_pred HHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC-CChHHH
Q psy15555 315 RQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN-LPYEDM 370 (488)
Q Consensus 315 ~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-~~~~el 370 (488)
.+++ |. +.|+|.+..--+++..+.+.+.+.+.+ ..+.++|- +|.+|.
T Consensus 129 ~~~~-----p~--l~ivg~h~GYf~~~e~~~i~~~I~~s~--pdil~VgmG~P~QE~ 176 (253)
T COG1922 129 RAKY-----PG--LKIVGSHDGYFDPEEEEAIVERIAASG--PDILLVGMGVPRQEI 176 (253)
T ss_pred HHHC-----CC--ceEEEecCCCCChhhHHHHHHHHHhcC--CCEEEEeCCCchhHH
Confidence 8887 54 456776522111111156667776665 45777765 466664
No 242
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=61.53 E-value=31 Score=33.66 Aligned_cols=74 Identities=11% Similarity=0.115 Sum_probs=44.7
Q ss_pred Cce-EEEEEecCCCCCcHHHHHHHHHHHHhc-CCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHH-HHHcC
Q psy15555 324 DNL-KLIFIGSTRNEEDEVCVKDMQDLCKHL-SLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVE-CMAAG 400 (488)
Q Consensus 324 ~~~-~l~ivG~~~~~~~~~~~~~l~~~~~~~-~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lE-a~a~G 400 (488)
.+. +++++|+.+ +.+++.+++. +..-...-.+-.+.+++.++++.+|++|..+..- ++..+++ ++..|
T Consensus 21 ~~~~~v~va~r~~--------~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g 91 (386)
T PF03435_consen 21 GPFEEVTVADRNP--------EKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-FGEPVARACIEAG 91 (386)
T ss_dssp TCE-EEEEEESSH--------HHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCH--------HHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhC
Confidence 455 889999875 4555555442 2122233344446677999999999999876433 4555554 56779
Q ss_pred CcEEEe
Q psy15555 401 LIMIAH 406 (488)
Q Consensus 401 ~PvI~~ 406 (488)
++.|-+
T Consensus 92 ~~yvD~ 97 (386)
T PF03435_consen 92 VHYVDT 97 (386)
T ss_dssp -EEEES
T ss_pred CCeecc
Confidence 999884
No 243
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=60.24 E-value=1.2e+02 Score=26.57 Aligned_cols=84 Identities=13% Similarity=0.123 Sum_probs=53.3
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEe-cCCChHHHHHHHHhCcEEEEcC---------CCCc-CCccH
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFK-VNLPYEDMKKEFSEGLIGLHAM---------WNEH-FGIGI 393 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~-g~~~~~el~~~~~~ad~~v~~s---------~~e~-~g~~~ 393 (488)
+.++.+++..... ..++.+.+.+..+++|........ ...+.+++.+.+..||+++.+- +.+. .--.+
T Consensus 29 ~~~i~~iptA~~~-~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i 107 (210)
T cd03129 29 GARVLFIPTASGD-RDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAI 107 (210)
T ss_pred CCeEEEEeCCCCC-hHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHH
Confidence 5677888765432 346778888888888875332222 1234588999999999554432 1222 22246
Q ss_pred HHHHHcCCcEEEeCCC
Q psy15555 394 VECMAAGLIMIAHKSG 409 (488)
Q Consensus 394 lEa~a~G~PvI~~~~~ 409 (488)
.+....|+|++.+..|
T Consensus 108 ~~~~~~G~v~~G~SAG 123 (210)
T cd03129 108 LKRVARGVVIGGTSAG 123 (210)
T ss_pred HHHHHcCCeEEEcCHH
Confidence 7888889988886544
No 244
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=60.16 E-value=1.2e+02 Score=27.10 Aligned_cols=109 Identities=14% Similarity=0.017 Sum_probs=62.7
Q ss_pred EEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCC-CCcHHHHHHHHHHHHhcCCCCcEEEecCCChHH
Q psy15555 291 KIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRN-EEDEVCVKDMQDLCKHLSLENNVEFKVNLPYED 369 (488)
Q Consensus 291 ~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~-~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~e 369 (488)
.++..|+.....=++.....++.+..+ +-++.+++.-.. ++...|.+..++..+++|.. +..+... ++
T Consensus 4 ll~s~~~~~~~~~l~~~~~~~~~~~~~-------~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~--v~~l~~~--~d 72 (233)
T PRK05282 4 LLLSNSTLPGTGYLEHALPLIAELLAG-------RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIE--VTGIHRV--AD 72 (233)
T ss_pred EEEecCCCCCCchHHHHHHHHHHHHcC-------CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCE--EEEeccc--hh
Confidence 344445554422224344444444332 346777775432 33457788888888888864 5555443 56
Q ss_pred HHHHHHhCcEEEEcCC--------CC--cCCccHHHHHHcCCcEEEeCCCC
Q psy15555 370 MKKEFSEGLIGLHAMW--------NE--HFGIGIVECMAAGLIMIAHKSGG 410 (488)
Q Consensus 370 l~~~~~~ad~~v~~s~--------~e--~~g~~~lEa~a~G~PvI~~~~~~ 410 (488)
..+.+..||+++.+-- .. +.-..+-|+...|+|++.+..|.
T Consensus 73 ~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGA 123 (233)
T PRK05282 73 PVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGA 123 (233)
T ss_pred hHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHH
Confidence 6788999995443320 11 12223558888999988866553
No 245
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=59.94 E-value=78 Score=29.41 Aligned_cols=122 Identities=11% Similarity=0.129 Sum_probs=64.0
Q ss_pred HHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchh-hhccCCCCCC-CCeEEEE-eeccCCCCChHHHHHHHHH
Q psy15555 237 HVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTED-LKKITHSKTD-GPVKIIS-VAQFRPEKDHPLQLRAMYQ 313 (488)
Q Consensus 237 ~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~-~~~~~~~~~~-~~~~i~~-~g~~~~~k~~~~ll~a~~~ 313 (488)
.+++.+|.|++-.......+.+.++...+..-. +..+... .......... ....++. .|.-.-..-...+++++
T Consensus 33 ~~L~~aDvI~~edtr~t~~ll~~~~i~~~~~~~-~~~~~~~~~~~i~~~l~~G~~ValvSdaGdP~I~dpg~~Lv~~~-- 109 (287)
T PRK14994 33 EVLQAVDLIAAEDTRHTGLLLQHFAINARLFAL-HDHNEQQKAETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTC-- 109 (287)
T ss_pred HHHHhCCEEEEeCCcchHHHHhhcCCCCEEEEc-cCCCHHHHHHHHHHHHHCCCeEEEEccCCCCceeCCHHHHHHHH--
Confidence 366889999998776555566666644332222 2111111 1111111112 2333443 44322222222333333
Q ss_pred hHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCC-CcEEEecCCCh------HHHHHHHHhCc
Q psy15555 314 LRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLE-NNVEFKVNLPY------EDMKKEFSEGL 378 (488)
Q Consensus 314 l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~~~~------~el~~~~~~ad 378 (488)
.+ .++.+.++++- ..+...+...|++ +++.|.|++|. +++.++.+..+
T Consensus 110 -~~-------~gi~v~vIPGi---------SA~~aA~a~sG~~~~~f~f~Gflp~~~~~r~~~L~~l~~~~~ 164 (287)
T PRK14994 110 -RE-------AGIRVVPLPGP---------CAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKALEAEPR 164 (287)
T ss_pred -HH-------CCCCEEEeCCH---------HHHHHHHHHcCCCCCcceEeEECCCCCchHHHHHHHHhcCCC
Confidence 22 26677888865 5566666677775 56788888763 46777887777
No 246
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=59.78 E-value=22 Score=33.75 Aligned_cols=77 Identities=6% Similarity=-0.051 Sum_probs=56.3
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEE
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMI 404 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI 404 (488)
+.--+++|.-......+-.+.+++++++.|....+...|.++.+.+..+ ...|+||..+..+ +++.+.-..-+|||
T Consensus 233 ~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL~nf-~eiD~fV~~aCPr---~sidd~~~f~kPvl 308 (332)
T TIGR00322 233 KKFGVVLSSKGGQGRLRLAKNLKKNLEEAGKTVLIILLSNVSPAKLLMF-DQIDVFVQVACPR---IAIDDGYLFNKPLL 308 (332)
T ss_pred CEEEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCC-CCcCEEEEecCCC---ceecchhhcCCccc
Confidence 3445677766555666788899999999998888888999988888655 5799999876432 34555566666666
Q ss_pred E
Q psy15555 405 A 405 (488)
Q Consensus 405 ~ 405 (488)
+
T Consensus 309 T 309 (332)
T TIGR00322 309 T 309 (332)
T ss_pred c
Confidence 5
No 247
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.59 E-value=1.5e+02 Score=27.38 Aligned_cols=46 Identities=20% Similarity=0.066 Sum_probs=36.6
Q ss_pred cEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCC
Q psy15555 358 NVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 358 ~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~ 408 (488)
+|..++++|+++..+++-.||+-+.- .| =+.+-|..+|+|.+=.-.
T Consensus 239 rvvklPFvpqddyd~LL~lcD~n~VR--GE---DSFVRAq~agkPflWHIY 284 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDFNLVR--GE---DSFVRAQLAGKPFLWHIY 284 (370)
T ss_pred EEEEecCCcHhHHHHHHHhcccceee--cc---hHHHHHHHcCCCcEEEec
Confidence 47778999999999999999964432 12 378999999999987544
No 248
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=59.20 E-value=81 Score=24.79 Aligned_cols=92 Identities=12% Similarity=0.172 Sum_probs=44.5
Q ss_pred eEEEcCCCCch--hhhccCCCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHH
Q psy15555 266 TYKLYPPCDTE--DLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCV 343 (488)
Q Consensus 266 ~~vi~~~~d~~--~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~ 343 (488)
+.+++.+.+.+ .+..... +.++.++.++... ......+-+.+..+++..+ +++.+++-|..+
T Consensus 28 ~~vi~lG~~vp~e~~~~~a~---~~~~d~V~iS~~~-~~~~~~~~~~~~~L~~~~~----~~i~i~~GG~~~-------- 91 (122)
T cd02071 28 FEVIYTGLRQTPEEIVEAAI---QEDVDVIGLSSLS-GGHMTLFPEVIELLRELGA----GDILVVGGGIIP-------- 91 (122)
T ss_pred CEEEECCCCCCHHHHHHHHH---HcCCCEEEEcccc-hhhHHHHHHHHHHHHhcCC----CCCEEEEECCCC--------
Confidence 56777765433 2222111 1223333333322 2233344555666666541 355655555444
Q ss_pred HHHHHHHHhcCCCCcEEEecCCChHHHHHHHH
Q psy15555 344 KDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS 375 (488)
Q Consensus 344 ~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~ 375 (488)
++..+..+++|+. . .|.+..+.+++..++.
T Consensus 92 ~~~~~~~~~~G~d-~-~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 92 PEDYELLKEMGVA-E-IFGPGTSIEEIIDKIR 121 (122)
T ss_pred HHHHHHHHHCCCC-E-EECCCCCHHHHHHHHh
Confidence 3334566677864 3 3444446677766654
No 249
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=58.75 E-value=27 Score=26.41 Aligned_cols=76 Identities=8% Similarity=0.048 Sum_probs=46.4
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHH-HHHcCCcEEEe
Q psy15555 328 LIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVE-CMAAGLIMIAH 406 (488)
Q Consensus 328 l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lE-a~a~G~PvI~~ 406 (488)
+++.|.|. ...--.+++++.+++.|++ +.+. ..+..++......+|+++.+.-....=-.+-| +...|+||..-
T Consensus 4 ll~C~~Ga--SSs~la~km~~~a~~~gi~--~~i~-a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I 78 (99)
T cd05565 4 LVLCAGGG--TSGLLANALNKGAKERGVP--LEAA-AGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTT 78 (99)
T ss_pred EEECCCCC--CHHHHHHHHHHHHHHCCCc--EEEE-EeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEe
Confidence 45556663 2335568899999999985 4333 23558999999999976665421110011222 33458899877
Q ss_pred CC
Q psy15555 407 KS 408 (488)
Q Consensus 407 ~~ 408 (488)
+.
T Consensus 79 ~~ 80 (99)
T cd05565 79 TG 80 (99)
T ss_pred CH
Confidence 64
No 250
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=58.51 E-value=62 Score=28.08 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=24.6
Q ss_pred cEEEEeccCCCCCCCce-ehHHHHHHHHHHhCCCeeEEEEeCCCC
Q psy15555 53 KTVAFFHPYCNAGGGGE-RVLWTAVLALHQKYPDYKIYIYTGDVD 96 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e-~~~~~l~~~L~~~~~~~~v~~~~~~~~ 96 (488)
|||++..++ |.. .-+..|.++|++. +++|++.....+
T Consensus 1 M~ILlTNDD-----Gi~a~Gi~aL~~~L~~~--g~~V~VvAP~~~ 38 (196)
T PF01975_consen 1 MRILLTNDD-----GIDAPGIRALAKALSAL--GHDVVVVAPDSE 38 (196)
T ss_dssp SEEEEE-SS------TTSHHHHHHHHHHTTT--SSEEEEEEESSS
T ss_pred CeEEEEcCC-----CCCCHHHHHHHHHHHhc--CCeEEEEeCCCC
Confidence 899987776 333 4567788899665 577777776544
No 251
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=58.16 E-value=44 Score=32.57 Aligned_cols=94 Identities=11% Similarity=0.049 Sum_probs=53.0
Q ss_pred CCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCC------ChHHHHH
Q psy15555 299 RPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNL------PYEDMKK 372 (488)
Q Consensus 299 ~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~------~~~el~~ 372 (488)
.|..++...=+.+..+.+.. ..+. -++|+.|.+ +++.+...+. +-..|.|.= +..++.+
T Consensus 267 NP~gDL~~T~~~~~~~~~~~-----~~w~-g~~g~~P~~------~e~~~~l~~~---dlf~Y~GHG~G~qy~~~~~i~~ 331 (383)
T PF03568_consen 267 NPSGDLKRTEKRFEPFFKSW-----KGWK-GIIGRAPTE------EEFLQALTSS---DLFLYCGHGSGEQYISGSTIQR 331 (383)
T ss_pred CCCCCHHHHHHHHHHHHhcc-----cCCC-ceECCCCCH------HHHHHHHHhC---CeEEEecCCcHHHhCCHhhhcc
Confidence 46666666666666666554 3344 456777654 4555554443 345666643 3334444
Q ss_pred HHHhCcE-EEEcCC--------CCcCCccHHHHHHcCCcEEEeCC
Q psy15555 373 EFSEGLI-GLHAMW--------NEHFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 373 ~~~~ad~-~v~~s~--------~e~~g~~~lEa~a~G~PvI~~~~ 408 (488)
+-..|-. +++.|. .|+.| +++.++.+|+|.|.++.
T Consensus 332 ~~~~~~~lL~GCsS~~l~~~g~~~~~g-~~~~yl~ag~p~vvg~L 375 (383)
T PF03568_consen 332 LDCCAVSLLMGCSSGRLKEQGEFEPYG-TPLSYLLAGCPLVVGNL 375 (383)
T ss_pred ccccCceEEecCCcccccccCCCCCCC-cHHHHHhcCChheEeec
Confidence 3333333 344441 22333 68899999999998765
No 252
>PRK07714 hypothetical protein; Provisional
Probab=57.27 E-value=79 Score=23.88 Aligned_cols=76 Identities=13% Similarity=0.199 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEE
Q psy15555 303 DHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLH 382 (488)
Q Consensus 303 ~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~ 382 (488)
|.+.+++++++ ..++++|+...-.. ...+.+...++..+++ +...+ +.+|+...+......+.
T Consensus 22 G~~~v~~al~~----------g~~~lViiA~D~s~---~~~~ki~~~~~~~~vp--~~~~~--sk~eLG~a~Gk~~~~~v 84 (100)
T PRK07714 22 GEELVLKEVRS----------GKAKLVLLSEDASV---NTTKKITDKCTYYNVP--MRKVE--NRQQLGHAIGKDERVVV 84 (100)
T ss_pred cHHHHHHHHHh----------CCceEEEEeCCCCH---HHHHHHHHHHHhcCCC--EEEeC--CHHHHHHHhCCCcceEE
Confidence 45555666544 35677776654322 5567888888877654 44443 56999999987653333
Q ss_pred cCCCCcCCccHHH
Q psy15555 383 AMWNEHFGIGIVE 395 (488)
Q Consensus 383 ~s~~e~~g~~~lE 395 (488)
.-..+++.-.+++
T Consensus 85 ai~d~g~a~~l~~ 97 (100)
T PRK07714 85 AVLDEGFAKKLRS 97 (100)
T ss_pred EEeCchhHHHHHH
Confidence 3334444444444
No 253
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=56.93 E-value=79 Score=27.55 Aligned_cols=33 Identities=15% Similarity=0.063 Sum_probs=20.9
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEE
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIY 91 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~ 91 (488)
|||+++.. |....+..+.+++.+....+.|++.
T Consensus 2 ~ki~vl~s------g~gs~~~~ll~~~~~~~~~~~I~~v 34 (200)
T PRK05647 2 KRIVVLAS------GNGSNLQAIIDACAAGQLPAEIVAV 34 (200)
T ss_pred ceEEEEEc------CCChhHHHHHHHHHcCCCCcEEEEE
Confidence 78888642 3345667788888776444555543
No 254
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=56.91 E-value=1.1e+02 Score=28.97 Aligned_cols=27 Identities=15% Similarity=0.370 Sum_probs=18.7
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEE
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIY 89 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~ 89 (488)
|||+|+ |.........++|.+.+ ++++
T Consensus 1 mkIvf~--------Gs~~~a~~~L~~L~~~~--~~i~ 27 (313)
T TIGR00460 1 LRIVFF--------GTPTFSLPVLEELREDN--FEVV 27 (313)
T ss_pred CEEEEE--------CCCHHHHHHHHHHHhCC--CcEE
Confidence 788886 45556677778888864 4444
No 255
>PRK12862 malic enzyme; Reviewed
Probab=56.56 E-value=66 Score=34.51 Aligned_cols=36 Identities=14% Similarity=-0.031 Sum_probs=29.7
Q ss_pred HHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEE
Q psy15555 369 DMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIA 405 (488)
Q Consensus 369 el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~ 405 (488)
.+.+.+..+|+||+.|....|.-.+++.|+ ..|+|.
T Consensus 254 ~l~e~~~~~~v~iG~s~~g~~~~~~v~~M~-~~piif 289 (763)
T PRK12862 254 TLAEVIEGADVFLGLSAAGVLKPEMVKKMA-PRPLIF 289 (763)
T ss_pred CHHHHHcCCCEEEEcCCCCCCCHHHHHHhc-cCCEEE
Confidence 578888889999999985556667899998 788887
No 256
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=56.43 E-value=84 Score=24.00 Aligned_cols=66 Identities=11% Similarity=0.210 Sum_probs=42.6
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHH
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECM 397 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~ 397 (488)
.+.++|+...-. ++..+++.+.++..+++ +...+ +.+|+...+....+.+..-..+++.-.+++.+
T Consensus 33 k~~lVI~A~D~s---~~~kkki~~~~~~~~vp--~~~~~--t~~eLg~a~Gk~~~~~iai~d~g~a~~l~~~~ 98 (104)
T PRK05583 33 KVYLIIISNDIS---ENSKNKFKNYCNKYNIP--YIEGY--SKEELGNAIGRDEIKILGVKDKNMAKKLLKLW 98 (104)
T ss_pred CceEEEEeCCCC---HhHHHHHHHHHHHcCCC--EEEec--CHHHHHHHhCCCCeEEEEEeChHHHHHHHHHH
Confidence 567777665432 25567888888877654 32223 55999999998775555555566666666544
No 257
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=56.38 E-value=1e+02 Score=27.83 Aligned_cols=89 Identities=12% Similarity=0.109 Sum_probs=45.7
Q ss_pred cEEEEeccCCCCCCCce-ehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceee
Q psy15555 53 KTVAFFHPYCNAGGGGE-RVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVE 131 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e-~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 131 (488)
|||++..++ |.. .-+..|+++|+ . ..+|+++..+.+.... -..+.+..+ +....+....+.-
T Consensus 1 mrILlTNDD-----Gi~a~Gi~aL~~al~-~--~~dV~VVAP~~~qSg~--------s~slTl~~P-lr~~~~~~~~~av 63 (252)
T COG0496 1 MRILLTNDD-----GIHAPGIRALARALR-E--GADVTVVAPDREQSGA--------SHSLTLHEP-LRVRQVDNGAYAV 63 (252)
T ss_pred CeEEEecCC-----ccCCHHHHHHHHHHh-h--CCCEEEEccCCCCccc--------ccccccccC-ceeeEeccceEEe
Confidence 788887665 333 33556777777 3 5677777776443221 012233344 5544444433433
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEec
Q psy15555 132 ASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDT 166 (488)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~ 166 (488)
. ..+---. ...+..++++..||+|++.
T Consensus 64 ~-GTPaDCV-------~lal~~l~~~~~pDLVvSG 90 (252)
T COG0496 64 N-GTPADCV-------ILGLNELLKEPRPDLVVSG 90 (252)
T ss_pred c-CChHHHH-------HHHHHHhccCCCCCEEEeC
Confidence 2 2211000 0224455666779999855
No 258
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=56.21 E-value=86 Score=28.45 Aligned_cols=92 Identities=12% Similarity=0.105 Sum_probs=54.8
Q ss_pred HHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCC-----CcEEEecCC----------------
Q psy15555 307 QLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLE-----NNVEFKVNL---------------- 365 (488)
Q Consensus 307 ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~-----~~v~~~g~~---------------- 365 (488)
++.|++...+.. .+.+++++|.|... ..-.+.+.+...+.|++ .++.+.+.-
T Consensus 12 ll~Al~~~g~~l-----~d~riv~~GAGsAg--~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~ 84 (255)
T PF03949_consen 12 LLNALRVTGKKL-----SDQRIVFFGAGSAG--IGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKP 84 (255)
T ss_dssp HHHHHHHHTS-G-----GG-EEEEEB-SHHH--HHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHH
T ss_pred HHHHHHHhCCCH-----HHcEEEEeCCChhH--HHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhh
Confidence 455555554554 68899999988421 12223344443444875 566665421
Q ss_pred ------Ch---HHHHHHHHhC--cEEEEcC-CCCcCCccHHHHHHc--CCcEEE
Q psy15555 366 ------PY---EDMKKEFSEG--LIGLHAM-WNEHFGIGIVECMAA--GLIMIA 405 (488)
Q Consensus 366 ------~~---~el~~~~~~a--d~~v~~s-~~e~~g~~~lEa~a~--G~PvI~ 405 (488)
+. ..+.+..+.+ |++|+.| ....|.--++++|+. ..|||.
T Consensus 85 ~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF 138 (255)
T PF03949_consen 85 FARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIF 138 (255)
T ss_dssp HHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEE
T ss_pred hhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEE
Confidence 01 2788889999 9999999 455566678888875 578887
No 259
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=56.01 E-value=1.3e+02 Score=25.94 Aligned_cols=35 Identities=11% Similarity=0.084 Sum_probs=22.0
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeC
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTG 93 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~ 93 (488)
|||+++.. |....+..+++++.+.....++.++.+
T Consensus 1 ~riail~s------g~gs~~~~ll~~~~~~~l~~~I~~vi~ 35 (190)
T TIGR00639 1 KRIVVLIS------GNGSNLQAIIDACKEGKIPASVVLVIS 35 (190)
T ss_pred CeEEEEEc------CCChhHHHHHHHHHcCCCCceEEEEEE
Confidence 57887632 445567788888887654556665433
No 260
>PRK07742 phosphate butyryltransferase; Validated
Probab=56.01 E-value=1.8e+02 Score=27.29 Aligned_cols=76 Identities=8% Similarity=0.113 Sum_probs=49.2
Q ss_pred CeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCC--CCcEEEecCCC
Q psy15555 289 PVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSL--ENNVEFKVNLP 366 (488)
Q Consensus 289 ~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l--~~~v~~~g~~~ 366 (488)
+..+++... +-+.+++|..+..+++ .++++++|+. +++++.++++++ .+++.++..-+
T Consensus 15 ~~ri~~~~~-----~d~~vl~Aa~~a~~e~------~~~~iLvG~~---------~~I~~~~~~~~l~~~~~~~Ii~~~~ 74 (299)
T PRK07742 15 KKTVAVAVA-----EDEEVIEAVAKAIELQ------LARFRLYGNQ---------EKIMGMLQEHGLQTSEHIEIIHAQS 74 (299)
T ss_pred CCeEEEeCC-----CCHHHHHHHHHHHHcC------CceEEEECCH---------HHHHHHHHHCCCCCCCCcEEECCCC
Confidence 345555442 2346688888777765 4889999975 678888888776 45677776643
Q ss_pred hHH----HHHHHH--hCcEEEEcC
Q psy15555 367 YED----MKKEFS--EGLIGLHAM 384 (488)
Q Consensus 367 ~~e----l~~~~~--~ad~~v~~s 384 (488)
..+ -..+.+ .+|+++.+.
T Consensus 75 ~~~s~~~a~~lV~~G~aD~lvsG~ 98 (299)
T PRK07742 75 SAEAAELAVKAVRNGEADVLMKGN 98 (299)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECC
Confidence 233 134555 788888554
No 261
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=55.78 E-value=53 Score=26.55 Aligned_cols=94 Identities=11% Similarity=0.183 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhC----c-EEEEcCCCCcCCccHHHHHH-cCCcEEEeCCCC--Ccc--
Q psy15555 344 KDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEG----L-IGLHAMWNEHFGIGIVECMA-AGLIMIAHKSGG--PKM-- 413 (488)
Q Consensus 344 ~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~a----d-~~v~~s~~e~~g~~~lEa~a-~G~PvI~~~~~~--~~~-- 413 (488)
+.+++.++++|+ .+.+...=..+|+.+++..| | +++.|..+-+.+..+.+|++ .++|+|=-.... .++
T Consensus 31 ~~~~~~a~~~g~--~v~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~vEVHiSNi~aRE~f 108 (141)
T TIGR01088 31 EIIETFAAQLNV--ELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAAVSLPVVEVHLSNVHAREEF 108 (141)
T ss_pred HHHHHHHHHcCC--EEEEEeeCcHHHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHcCCCCEEEEEcCCccccccc
Confidence 445555555554 36665544557787777765 5 66777777778889999876 599998733221 221
Q ss_pred ---ceeccCCCccccceecC-CHHHHHHHHHHHH
Q psy15555 414 ---DIVIEDPETCRNGFLAC-DEVEYAQTIKLIL 443 (488)
Q Consensus 414 ---eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll 443 (488)
.++.+. ..|.++. -.+...-++..++
T Consensus 109 R~~S~is~~----~~G~I~G~G~~gY~lAl~a~~ 138 (141)
T TIGR01088 109 RHHSYTAPV----AGGVIVGLGAQGYLLALRYLV 138 (141)
T ss_pred ccccccccc----ceEEEeecCHHHHHHHHHHHH
Confidence 223322 3455544 5555555555544
No 262
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=55.73 E-value=50 Score=28.10 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=18.0
Q ss_pred CceehHHHHHHHHHHhCCCeeEEEE
Q psy15555 67 GGERVLWTAVLALHQKYPDYKIYIY 91 (488)
Q Consensus 67 G~e~~~~~l~~~L~~~~~~~~v~~~ 91 (488)
|.+-++..+++.|.+++|++++.-.
T Consensus 56 ~~~~v~~~~~~~l~~~yP~l~i~g~ 80 (177)
T TIGR00696 56 GKPDVLQQLKVKLIKEYPKLKIVGA 80 (177)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEE
Confidence 4556777777888888888776654
No 263
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=55.71 E-value=99 Score=27.73 Aligned_cols=33 Identities=15% Similarity=0.060 Sum_probs=22.1
Q ss_pred Cc-EEEEcCCCCcCCccHHHHHHcCCcEEEeCCC
Q psy15555 377 GL-IGLHAMWNEHFGIGIVECMAAGLIMIAHKSG 409 (488)
Q Consensus 377 ad-~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~ 409 (488)
.| +++.+...+.....+-++...|+|||+.+..
T Consensus 56 ~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 56 VDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp ESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST
T ss_pred CCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc
Confidence 56 4445444444444566788899999998776
No 264
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=55.66 E-value=46 Score=28.12 Aligned_cols=28 Identities=36% Similarity=0.558 Sum_probs=20.8
Q ss_pred CceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 67 GGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 67 G~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
|.+.++..++..|.+++|++.++-+...
T Consensus 56 ~~~~~~~~~~~~l~~~yP~l~ivg~~~g 83 (172)
T PF03808_consen 56 GSEEVLEKAAANLRRRYPGLRIVGYHHG 83 (172)
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 5667777888888888888887755443
No 265
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=55.24 E-value=1.2e+02 Score=27.89 Aligned_cols=99 Identities=9% Similarity=-0.010 Sum_probs=55.9
Q ss_pred CCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCCh
Q psy15555 288 GPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPY 367 (488)
Q Consensus 288 ~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 367 (488)
+..+++..|... .+.+++....+.+ .++++++.-..|..+. ..+.+.+.+.|++ |+++..
T Consensus 107 ~~~~ILT~~~S~------~v~~~l~~a~~~~-----~~~~V~v~es~P~~eG----~~~a~~L~~~gi~--v~~i~d--- 166 (282)
T PF01008_consen 107 DGDTILTHGYSS------TVERFLLSAKKKG-----KKFRVIVLESRPYNEG----RLMAKELAEAGIP--VTLIPD--- 166 (282)
T ss_dssp TTEEEEEES--S------HHHHHHHHHHHTT-----EEEEEEEE--TTTTHH----HTHHHHHHHTT-E--EEEE-G---
T ss_pred CCeEEEEeCCch------HHHHHHHHHHHcC-----CeEEEEEccCCcchhh----hhHHHHhhhccee--EEEEec---
Confidence 345677767443 2555666655555 6888888887775532 3344444555653 555544
Q ss_pred HHHHHHHHh-CcEEEEcC--CCCcCCc--------cHHHHHHcCCcEEEe
Q psy15555 368 EDMKKEFSE-GLIGLHAM--WNEHFGI--------GIVECMAAGLIMIAH 406 (488)
Q Consensus 368 ~el~~~~~~-ad~~v~~s--~~e~~g~--------~~lEa~a~G~PvI~~ 406 (488)
..+..+++. +|.++.+. ..+.+|. ..+=|-.+++||++-
T Consensus 167 ~~~~~~m~~~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~ 216 (282)
T PF01008_consen 167 SAVGYVMPRDVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVL 216 (282)
T ss_dssp GGHHHHHHCTESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE
T ss_pred hHHHHHHHHhCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEE
Confidence 789999999 99655554 2333332 135566789999984
No 266
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=55.11 E-value=2.2e+02 Score=27.99 Aligned_cols=100 Identities=12% Similarity=0.039 Sum_probs=59.1
Q ss_pred CCChHHHHHHHHHhHHhhh-hhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcE
Q psy15555 301 EKDHPLQLRAMYQLRQIIS-EELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLI 379 (488)
Q Consensus 301 ~k~~~~ll~a~~~l~~~~~-~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~ 379 (488)
..|.+..++++........ ....++-.+-|+|..... .-..++++++++.|+..+..+.+..+.+|+.. +..|.+
T Consensus 135 ~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~---~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~-~~~A~~ 210 (406)
T cd01967 135 SLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIG---GDAWVIKPLLEELGIRVNATFTGDGTVDELRR-AHRAKL 210 (406)
T ss_pred cHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccc---hhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhh-CccCCE
Confidence 4557767777655432110 000123457777864322 23489999999999987777877767788887 566664
Q ss_pred EEEcCCCCcCCccHHHHHH--cCCcEEEe
Q psy15555 380 GLHAMWNEHFGIGIVECMA--AGLIMIAH 406 (488)
Q Consensus 380 ~v~~s~~e~~g~~~lEa~a--~G~PvI~~ 406 (488)
-+..+. ..|....+.|. +|+|.+..
T Consensus 211 niv~~~--~~~~~~a~~L~~r~GiP~~~~ 237 (406)
T cd01967 211 NLVHCS--RSMNYLAREMEERYGIPYMEV 237 (406)
T ss_pred EEEECh--HHHHHHHHHHHHhhCCCEEEe
Confidence 443321 12344444443 69999863
No 267
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=54.55 E-value=98 Score=23.85 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 72 LWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 72 ~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
.......+.+..++.+++..+..
T Consensus 12 g~~~~~~~~~~~~~~~v~~v~d~ 34 (120)
T PF01408_consen 12 GRRHLRALLRSSPDFEVVAVCDP 34 (120)
T ss_dssp HHHHHHHHHHTTTTEEEEEEECS
T ss_pred HHHHHHHHHhcCCCcEEEEEEeC
Confidence 44445677777678888766655
No 268
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=54.47 E-value=1.3e+02 Score=26.97 Aligned_cols=95 Identities=6% Similarity=-0.087 Sum_probs=58.1
Q ss_pred HHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCc------E
Q psy15555 306 LQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGL------I 379 (488)
Q Consensus 306 ~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad------~ 379 (488)
.+..|+ +|-+++ +.-++++-|++.... ....+.+++.+.++|+++.-++....+.+-........+ +
T Consensus 69 Rl~~A~-~LYk~g-----k~~~ilvSGg~~~~~-~~Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i~~~~~~ 141 (239)
T PRK10834 69 RIQGAI-NAYNSG-----KVNYLLLSGDNALQS-YNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDTNDF 141 (239)
T ss_pred HHHHHH-HHHHhC-----CCCEEEEeCCCCCCC-CCHHHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHHhCCCCE
Confidence 334444 444554 556777888654322 223367888899999998877777665544444444433 4
Q ss_pred EEEcCCCCcCCccHHHHHHcCCcEEEeCC
Q psy15555 380 GLHAMWNEHFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 380 ~v~~s~~e~~g~~~lEa~a~G~PvI~~~~ 408 (488)
.|.+| .-+.+-++.-+-..|.-+++...
T Consensus 142 iIVTq-~fHm~RA~~ia~~~Gi~~~~~~a 169 (239)
T PRK10834 142 IIITQ-RFHCERALFIALHMGIQAQCYAV 169 (239)
T ss_pred EEECC-HHHHHHHHHHHHHcCCceEEEeC
Confidence 45444 23445567778888998887654
No 269
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=54.42 E-value=1.1e+02 Score=28.84 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=17.5
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCC
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPD 85 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~ 85 (488)
|||+|+ |.........++|.+.+++
T Consensus 1 mkIvf~--------G~~~~a~~~L~~L~~~~~~ 25 (309)
T PRK00005 1 MRIVFM--------GTPEFAVPSLKALLESGHE 25 (309)
T ss_pred CEEEEE--------CCCHHHHHHHHHHHHCCCc
Confidence 788887 4555667788888876333
No 270
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=54.41 E-value=93 Score=26.50 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=23.9
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCC
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVD 96 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~ 96 (488)
|||+|+.. |....+..+..++.+..++++++.+.+.++
T Consensus 1 mrI~~~~S------g~~~~~~~~l~~l~~~~~~~~iv~Vit~~~ 38 (181)
T PF00551_consen 1 MRIVFFGS------GSGSFLKALLEALKARGHNVEIVLVITNPD 38 (181)
T ss_dssp EEEEEEES------SSSHHHHHHHHHHHTTSSEEEEEEEEESST
T ss_pred CEEEEEEc------CCCHHHHHHHHHHHhCCCCceEEEEecccc
Confidence 78988742 233556677788888766545655554433
No 271
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=54.31 E-value=73 Score=30.70 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=37.4
Q ss_pred cEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCC
Q psy15555 358 NVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 358 ~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~ 408 (488)
.+..++++|+++..+++-.||+-+. ..|. +.+-|..+|+|.|=.-+
T Consensus 245 ~l~~lPF~~Q~~yD~LLw~cD~NfV--RGED---SfVRAqwAgkPFvWhIY 290 (374)
T PF10093_consen 245 TLHVLPFVPQDDYDRLLWACDFNFV--RGED---SFVRAQWAGKPFVWHIY 290 (374)
T ss_pred EEEECCCCCHHHHHHHHHhCccceE--ecch---HHHHHHHhCCCceEecC
Confidence 5888999999999999999996443 2232 78999999999997654
No 272
>PRK10494 hypothetical protein; Provisional
Probab=54.18 E-value=87 Score=28.60 Aligned_cols=98 Identities=16% Similarity=0.205 Sum_probs=57.4
Q ss_pred HHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCC---hHH---HHHHHHhCc
Q psy15555 305 PLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLP---YED---MKKEFSEGL 378 (488)
Q Consensus 305 ~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~---~~e---l~~~~~~ad 378 (488)
+.+.++++..+ ++ +..++++.|+....+.....+..++.+.++|++..-.+....+ .++ ..+++....
T Consensus 107 ~Rl~~a~~L~r-~~-----~~~~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~Ii~e~~s~nT~eNa~~~~~~~~~~~ 180 (259)
T PRK10494 107 PRLTEGIRLWR-AN-----PGAKLIFTGGAAKTNTVSTAEVGARVAQSLGVPREDIITLDLPKDTEEEAAAVKQAIGDAP 180 (259)
T ss_pred HHHHHHHHHHH-hC-----CCCEEEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHeeeCCCCCCHHHHHHHHHHHhCCCC
Confidence 45666665554 44 6788888886432221122356677888899986544443322 232 333444434
Q ss_pred EEEEcCCCCcCCccHHHHHHcCCcEEEeCCC
Q psy15555 379 IGLHAMWNEHFGIGIVECMAAGLIMIAHKSG 409 (488)
Q Consensus 379 ~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~ 409 (488)
+.+.+|. -+.+-+...+-..|..|+..+.+
T Consensus 181 iiLVTsa-~Hm~RA~~~f~~~Gl~v~p~Ptd 210 (259)
T PRK10494 181 FLLVTSA-SHLPRAMIFFQQEGLNPLPAPAN 210 (259)
T ss_pred EEEECCH-HHHHHHHHHHHHcCCceeecCCc
Confidence 6666653 34455667777789999976653
No 273
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=53.89 E-value=50 Score=26.88 Aligned_cols=95 Identities=16% Similarity=0.178 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhC----c-EEEEcCCCCcCCccHHHHHH-cCCcEEEeCCCC--Ccc--
Q psy15555 344 KDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEG----L-IGLHAMWNEHFGIGIVECMA-AGLIMIAHKSGG--PKM-- 413 (488)
Q Consensus 344 ~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~a----d-~~v~~s~~e~~g~~~lEa~a-~G~PvI~~~~~~--~~~-- 413 (488)
+.+++.++++|+ .+.|...=..+|+.+.+..+ | +.+.|..+-..+..+.+|++ .++|+|=-.... .++
T Consensus 33 ~~~~~~a~~~g~--~~~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~VEVHiSNi~aRE~f 110 (146)
T PRK13015 33 ALCRAAAEALGL--EVEFRQSNHEGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAALELPVIEVHISNVHAREAF 110 (146)
T ss_pred HHHHHHHHHcCC--EEEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHcCCCCEEEEEcCCccccccc
Confidence 444555555554 35555444556666666554 6 66777777778888999875 499998733221 221
Q ss_pred ---ceeccCCCccccceecC-CHHHHHHHHHHHHc
Q psy15555 414 ---DIVIEDPETCRNGFLAC-DEVEYAQTIKLILH 444 (488)
Q Consensus 414 ---eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~ 444 (488)
.++.+. ..|.++. -.+...-++..+++
T Consensus 111 R~~S~is~~----~~G~I~G~G~~gY~lAl~al~~ 141 (146)
T PRK13015 111 RHHSYVSAI----ADGVICGLGTEGYRLALRRLAT 141 (146)
T ss_pred cccccccCc----eeEEEeeCCHHHHHHHHHHHHH
Confidence 233333 4555554 56666666665543
No 274
>PRK06988 putative formyltransferase; Provisional
Probab=53.42 E-value=1.2e+02 Score=28.69 Aligned_cols=30 Identities=13% Similarity=0.028 Sum_probs=19.2
Q ss_pred ccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEE
Q psy15555 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIY 89 (488)
Q Consensus 52 ~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~ 89 (488)
.|||+|+ |.........+.|.+.++++..+
T Consensus 2 ~mkIvf~--------Gs~~~a~~~L~~L~~~~~~i~~V 31 (312)
T PRK06988 2 KPRAVVF--------AYHNVGVRCLQVLLARGVDVALV 31 (312)
T ss_pred CcEEEEE--------eCcHHHHHHHHHHHhCCCCEEEE
Confidence 3799987 44456677778888774444333
No 275
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=53.02 E-value=34 Score=27.78 Aligned_cols=95 Identities=11% Similarity=0.154 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhC----c-EEEEcCCCCcCCccHHHHHH-cCCcEEEeCCCC--Ccc--
Q psy15555 344 KDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEG----L-IGLHAMWNEHFGIGIVECMA-AGLIMIAHKSGG--PKM-- 413 (488)
Q Consensus 344 ~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~a----d-~~v~~s~~e~~g~~~lEa~a-~G~PvI~~~~~~--~~~-- 413 (488)
+.+++.+++.|+ .+.+...=..+|+.+.+..| | +++.|..+-..+..+.+|+. .++|+|=-.... .++
T Consensus 33 ~~~~~~a~~~g~--~v~~~QSN~EGelId~I~~a~~~~dgiiINpga~THtSiAl~DAl~~~~~P~VEVHiSNi~aRE~f 110 (146)
T PRK05395 33 ALLEEEAAELGV--ELEFFQSNHEGELIDRIHEARDGADGIIINPGAYTHTSVALRDALAAVSIPVIEVHLSNIHAREEF 110 (146)
T ss_pred HHHHHHHHHcCC--EEEEEeeCcHHHHHHHHHhcccCCcEEEECchHHHHHHHHHHHHHHcCCCCEEEEecCCccccccc
Confidence 445555555554 35665544557777777665 5 66777777778888999886 589998733221 221
Q ss_pred ---ceeccCCCccccceecC-CHHHHHHHHHHHHc
Q psy15555 414 ---DIVIEDPETCRNGFLAC-DEVEYAQTIKLILH 444 (488)
Q Consensus 414 ---eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~ 444 (488)
.++.+. ..|.++. -.+...-++..+++
T Consensus 111 R~~S~is~~----a~G~I~G~G~~gY~lAl~al~~ 141 (146)
T PRK05395 111 RHHSYISDV----AVGVICGFGADGYLLALEALAE 141 (146)
T ss_pred ccccccccc----ceEEEeeCCHHhHHHHHHHHHH
Confidence 223333 4455554 55666556555543
No 276
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=52.60 E-value=1.3e+02 Score=27.97 Aligned_cols=106 Identities=8% Similarity=0.025 Sum_probs=54.2
Q ss_pred cccccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccc
Q psy15555 49 YNVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRK 128 (488)
Q Consensus 49 ~~~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 128 (488)
..+..+|++-. .++.|=...+-.|...|.++++.+-|+..-++...+...+.-....-.....+.+ +.+...+.+.
T Consensus 48 tG~a~viGITG---~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~-vFiRs~~srG 123 (323)
T COG1703 48 TGNAHVIGITG---VPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPG-VFIRSSPSRG 123 (323)
T ss_pred CCCCcEEEecC---CCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCC-eEEeecCCCc
Confidence 34556888742 1233455677779999999966666665555443333333221111111122233 5555444433
Q ss_pred eeeccCchhHHHHHHHHHHHHHHHHHhhhcCCcEE-EecCCc
Q psy15555 129 FVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIY-IDTMGY 169 (488)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDii-i~~~~~ 169 (488)
.. +-+ -...+.+...++...+|+| ++|-+-
T Consensus 124 ~l-----GGl------S~at~~~i~~ldAaG~DvIIVETVGv 154 (323)
T COG1703 124 TL-----GGL------SRATREAIKLLDAAGYDVIIVETVGV 154 (323)
T ss_pred cc-----hhh------hHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 32 111 1122445567888999955 577543
No 277
>PRK12861 malic enzyme; Reviewed
Probab=51.77 E-value=64 Score=34.46 Aligned_cols=37 Identities=14% Similarity=0.059 Sum_probs=29.9
Q ss_pred HHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEE
Q psy15555 368 EDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIA 405 (488)
Q Consensus 368 ~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~ 405 (488)
..+.+.+..+|+|++.|....|.--+++.|+- .|+|.
T Consensus 249 ~~L~eai~~advliG~S~~g~ft~e~v~~Ma~-~PIIF 285 (764)
T PRK12861 249 RTLAEVIGGADVFLGLSAGGVLKAEMLKAMAA-RPLIL 285 (764)
T ss_pred CCHHHHHhcCCEEEEcCCCCCCCHHHHHHhcc-CCEEE
Confidence 36788888999999999755566678899976 88887
No 278
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=51.13 E-value=1.2e+02 Score=27.47 Aligned_cols=81 Identities=6% Similarity=-0.066 Sum_probs=52.3
Q ss_pred CChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEE
Q psy15555 302 KDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGL 381 (488)
Q Consensus 302 k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v 381 (488)
.+++.+++.+... .+..+++..-|.+. .+..+++.+.++++|+..-+.+.+..|.+++..+.+.+|-++
T Consensus 88 ~~~~~~i~~~~~~----------Gadgvii~dlp~e~-~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l 156 (244)
T PRK13125 88 DSLDNFLNMARDV----------GADGVLFPDLLIDY-PDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFI 156 (244)
T ss_pred hCHHHHHHHHHHc----------CCCEEEECCCCCCc-HHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEE
Confidence 4666666666543 34455555433211 145578889999999987666777777889999999999544
Q ss_pred EcCCCCcCCccH
Q psy15555 382 HAMWNEHFGIGI 393 (488)
Q Consensus 382 ~~s~~e~~g~~~ 393 (488)
.-|...++|..+
T Consensus 157 ~msv~~~~g~~~ 168 (244)
T PRK13125 157 YYGLRPATGVPL 168 (244)
T ss_pred EEEeCCCCCCCc
Confidence 335555555443
No 279
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=51.05 E-value=21 Score=26.79 Aligned_cols=75 Identities=9% Similarity=0.089 Sum_probs=45.9
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHH--HcCCcEEE
Q psy15555 328 LIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECM--AAGLIMIA 405 (488)
Q Consensus 328 l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~--a~G~PvI~ 405 (488)
+++.|.|-.. + -..+.+++.+++.|++-.+.-. +..++......+|+++.++.... -..-++.. ..|+||..
T Consensus 7 Ll~C~~G~sS-S-~l~~k~~~~~~~~gi~~~v~a~---~~~~~~~~~~~~Dvill~pqi~~-~~~~i~~~~~~~~ipv~~ 80 (95)
T TIGR00853 7 LLLCAAGMST-S-LLVNKMNKAAEEYGVPVKIAAG---SYGAAGEKLDDADVVLLAPQVAY-MLPDLKKETDKKGIPVEV 80 (95)
T ss_pred EEECCCchhH-H-HHHHHHHHHHHHCCCcEEEEEe---cHHHHHhhcCCCCEEEECchHHH-HHHHHHHHhhhcCCCEEE
Confidence 5666766432 2 3457888899998886333333 44778888889997776542211 12234433 34789998
Q ss_pred eCC
Q psy15555 406 HKS 408 (488)
Q Consensus 406 ~~~ 408 (488)
-+.
T Consensus 81 I~~ 83 (95)
T TIGR00853 81 ING 83 (95)
T ss_pred eCh
Confidence 765
No 280
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=51.04 E-value=1.4e+02 Score=27.05 Aligned_cols=79 Identities=14% Similarity=0.083 Sum_probs=46.7
Q ss_pred CCcEEEecC-CCh---HHHHHHHHhCc-EEEEcCCCCcCCcc--HHHHHHcCCcEEEeCCCCCccceeccCCCcccccee
Q psy15555 356 ENNVEFKVN-LPY---EDMKKEFSEGL-IGLHAMWNEHFGIG--IVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFL 428 (488)
Q Consensus 356 ~~~v~~~g~-~~~---~el~~~~~~ad-~~v~~s~~e~~g~~--~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~ 428 (488)
.++|.+.|. +|. ++..+....|| +++.++.....+.. +..+...|.|+|.-|.+... ..+ ...+.
T Consensus 154 rP~Vv~FgE~~p~~~~~~~~~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~---~d~-----~~~~~ 225 (244)
T PRK14138 154 RPNIVFFGEALPQDALREAIRLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETP---LDD-----IATLK 225 (244)
T ss_pred CCCEEECCCcCCHHHHHHHHHHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCC---CCc-----ceeEE
Confidence 467888776 454 45667888999 44555544444433 33677789999988764332 111 22333
Q ss_pred c-CCHHHHHHHHHHH
Q psy15555 429 A-CDEVEYAQTIKLI 442 (488)
Q Consensus 429 ~-~~~~~l~~~i~~l 442 (488)
. .+..+....+.+.
T Consensus 226 i~~~~~~~l~~l~~~ 240 (244)
T PRK14138 226 YNMDVVEFANRVMSE 240 (244)
T ss_pred EeCCHHHHHHHHHHH
Confidence 3 3666666655543
No 281
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=50.79 E-value=1.4e+02 Score=27.36 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=56.2
Q ss_pred HHHHHHHHhCcEEEE-cCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC-CHHHHHHHHHHHHc-
Q psy15555 368 EDMKKEFSEGLIGLH-AMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKLILH- 444 (488)
Q Consensus 368 ~el~~~~~~ad~~v~-~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~- 444 (488)
..-..-++.||++|. +...|++=-.+++.. .+.+++.....+.. +--... ..-|+-+ +...+++.|.+.+.
T Consensus 44 p~d~~~l~~ADliv~~G~~lE~~~~k~~~~~-~~~~v~~~~~~~~~-~~~~~d----PH~Wldp~n~~~~a~~I~~~L~~ 117 (264)
T cd01020 44 PTDAAKVSTADIVVYNGGGYDPWMTKLLADT-KDVIVIAADLDGHD-DKEGDN----PHLWYDPETMSKVANALADALVK 117 (264)
T ss_pred HHHHHHHhhCCEEEEeCCCchHHHHHHHHhc-CCceEEeeeccccc-CCCCCC----CceecCHhHHHHHHHHHHHHHHH
Confidence 455567788886554 334565545555555 35556554332211 000001 2234433 66777777776553
Q ss_pred cCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q psy15555 445 LSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQP 479 (488)
Q Consensus 445 ~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~ 479 (488)
.||+......+|+.++.++ .+...+++.+.+..
T Consensus 118 ~dP~~~~~y~~N~~~~~~~--l~~l~~~~~~~~~~ 150 (264)
T cd01020 118 ADPDNKKYYQANAKKFVAS--LKPLAAKIAELSAK 150 (264)
T ss_pred hCcccHHHHHHHHHHHHHH--HHHHHHHHHHHHhh
Confidence 4777777888888776655 34444455444443
No 282
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=50.03 E-value=2.5e+02 Score=27.33 Aligned_cols=86 Identities=7% Similarity=-0.131 Sum_probs=57.0
Q ss_pred CChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEE
Q psy15555 302 KDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGL 381 (488)
Q Consensus 302 k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v 381 (488)
+++..+++++.+..+.. +.-++.|+-.......+...+.+.+-+.+.|....+.....-+.+|+......|+.++
T Consensus 228 ~~~~~i~~~Y~~W~~~~-----~~~~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~v 302 (388)
T COG0426 228 GNPKEIVEAYRDWAEGQ-----PKGKVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLV 302 (388)
T ss_pred CCHHHHHHHHHHHHccC-----CcceEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEE
Confidence 46888999999988765 2224555554333333355566666677778776677777667899999999999766
Q ss_pred EcC-CCCcCCcc
Q psy15555 382 HAM-WNEHFGIG 392 (488)
Q Consensus 382 ~~s-~~e~~g~~ 392 (488)
.+| ..++..+.
T Consensus 303 vGsPT~~~~~~p 314 (388)
T COG0426 303 VGSPTINGGAHP 314 (388)
T ss_pred EecCcccCCCCc
Confidence 666 33343333
No 283
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=49.86 E-value=38 Score=25.41 Aligned_cols=75 Identities=12% Similarity=0.164 Sum_probs=46.3
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHH--HHHcCCcEEE
Q psy15555 328 LIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVE--CMAAGLIMIA 405 (488)
Q Consensus 328 l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lE--a~a~G~PvI~ 405 (488)
+++.|.|-... -..+.+++.+++.|++-.|.-. +..++......+|+++.++.... -..-++ +.-.++||..
T Consensus 3 l~~Cg~G~sTS--~~~~ki~~~~~~~~~~~~v~~~---~~~~~~~~~~~~Diil~~Pqv~~-~~~~i~~~~~~~~~pv~~ 76 (96)
T cd05564 3 LLVCSAGMSTS--ILVKKMKKAAEKRGIDAEIEAV---PESELEEYIDDADVVLLGPQVRY-MLDEVKKKAAEYGIPVAV 76 (96)
T ss_pred EEEcCCCchHH--HHHHHHHHHHHHCCCceEEEEe---cHHHHHHhcCCCCEEEEChhHHH-HHHHHHHHhccCCCcEEE
Confidence 56677775332 3457889999999886444333 33778788889997666542211 122233 3457899988
Q ss_pred eCC
Q psy15555 406 HKS 408 (488)
Q Consensus 406 ~~~ 408 (488)
-+.
T Consensus 77 I~~ 79 (96)
T cd05564 77 IDM 79 (96)
T ss_pred cCh
Confidence 664
No 284
>KOG3966|consensus
Probab=49.52 E-value=28 Score=31.28 Aligned_cols=16 Identities=50% Similarity=1.549 Sum_probs=13.2
Q ss_pred ceecccchhHHHHHHH
Q psy15555 2 FCCLWKSVVMWLVFLF 17 (488)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (488)
-||+|+-..||+.+++
T Consensus 92 ~cc~wngg~~w~s~ll 107 (360)
T KOG3966|consen 92 LCCLWNGGAMWISFLL 107 (360)
T ss_pred HHHHHhcchHHHHHHH
Confidence 4999999999976653
No 285
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=49.45 E-value=1.3e+02 Score=25.45 Aligned_cols=106 Identities=8% Similarity=0.111 Sum_probs=56.6
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEec-CCChHHHHHHHH--hCcEEEEcC-CCCcCCccHHHHHHcCCc
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKV-NLPYEDMKKEFS--EGLIGLHAM-WNEHFGIGIVECMAAGLI 402 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g-~~~~~el~~~~~--~ad~~v~~s-~~e~~g~~~lEa~a~G~P 402 (488)
++.++.+.+ ...+.+.+.....+ ...... .-+..+....+. ..|+++... ..+.-|...++.+..+.|
T Consensus 3 ~ilivd~~~-----~~~~~l~~~L~~~~---~~~~~~~~~~~~~~l~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~ 74 (196)
T PRK10360 3 TVALIDDHL-----IVRSGFAQLLGLEP---DLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMA 74 (196)
T ss_pred EEEEECCcH-----HHHHHHHHHHccCC---CcEEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHccCCC
Confidence 456676654 44455555554321 122111 112245545553 357655543 333345667777766788
Q ss_pred EEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 403 MIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 403 vI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
||........+ +.+..+ ..+++.. +.+++.+++..++.
T Consensus 75 vi~~s~~~~~~~~~~~~~~g----a~~~i~kp~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 75 TIMLSVHDSPALVEQALNAG----ARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred EEEEECCCCHHHHHHHHHcC----CcEEEECCCCHHHHHHHHHHHHc
Confidence 87754333321 223333 5567665 88899999988775
No 286
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=49.30 E-value=2e+02 Score=25.98 Aligned_cols=97 Identities=11% Similarity=0.104 Sum_probs=55.5
Q ss_pred CeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCc--EEEecCCC
Q psy15555 289 PVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENN--VEFKVNLP 366 (488)
Q Consensus 289 ~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~--v~~~g~~~ 366 (488)
+.+++..|+ ++ +..|...... ..+...+++. .+..+.+.+++++.. |-.-|..+
T Consensus 129 ~rVflt~G~----~~----l~~f~~~~~~------~~~~~Rvlp~----------~~~~~~~~~~~~p~~~Iia~~GPfs 184 (257)
T COG2099 129 RRVFLTTGR----QN----LAHFVAADAH------SHVLARVLPP----------PDVLAKCEDLGVPPARIIAMRGPFS 184 (257)
T ss_pred CcEEEecCc----cc----hHHHhcCccc------ceEEEEEcCc----------hHHHHHHHhcCCChhhEEEecCCcC
Confidence 457777775 55 3455555332 2344445543 334555666676543 23346666
Q ss_pred hHHHHHHHHhC--cEEEEcCCCCcCC--ccHHHHHHcCCcEEEeCCC
Q psy15555 367 YEDMKKEFSEG--LIGLHAMWNEHFG--IGIVECMAAGLIMIAHKSG 409 (488)
Q Consensus 367 ~~el~~~~~~a--d~~v~~s~~e~~g--~~~lEa~a~G~PvI~~~~~ 409 (488)
.+.=..++.+. |++|.--..+.+| -++-=|...|+|||.-.-+
T Consensus 185 ~~~n~all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 185 EEDNKALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred hHHHHHHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 55555566665 4666543333333 3567788899999997664
No 287
>PRK00865 glutamate racemase; Provisional
Probab=49.30 E-value=67 Score=29.35 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=24.4
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCC
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDV 95 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~ 95 (488)
+.|+++- ++.|| ..+.+++.++.|+.+++.+..+.
T Consensus 6 ~~IgvfD--SGiGG------Ltvl~~i~~~lp~~~~iY~~D~~ 40 (261)
T PRK00865 6 APIGVFD--SGVGG------LTVLREIRRLLPDEHIIYVGDTA 40 (261)
T ss_pred CeEEEEE--CCccH------HHHHHHHHHHCCCCCEEEEecCC
Confidence 5799874 44444 55568888888888877766553
No 288
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=49.15 E-value=2.9e+02 Score=27.71 Aligned_cols=162 Identities=13% Similarity=0.081 Sum_probs=82.8
Q ss_pred hcccCEEEEcChhHHHHHHHHhcc-CCceEEEcCCCCchh-------hhccCCCCCCCCeEEEEeeccC--CCCChHHHH
Q psy15555 239 GKYSDIIMVNSSWTEEHVIQLWNC-QLKTYKLYPPCDTED-------LKKITHSKTDGPVKIISVAQFR--PEKDHPLQL 308 (488)
Q Consensus 239 ~~~~d~ii~~s~~~~~~~~~~~~~-~~k~~vi~~~~d~~~-------~~~~~~~~~~~~~~i~~~g~~~--~~k~~~~ll 308 (488)
+...|.|.--.+...+.+.+.... +.+...+.+.+-... .........+-+.+.+....+. ...|.+..+
T Consensus 96 l~E~dvVfGg~~kL~~~I~e~~~~~~P~~I~V~ttC~~~lIGdDi~~v~~e~~~~~~~~vi~v~t~gf~g~~~~G~~~a~ 175 (456)
T TIGR01283 96 LTEKDVIFGGEKKLFHAIREIVERYHPPAVFVYSTCVPGLIGDDLEAVCKAAAEKTGIPVIPVDSEGFYGSKNLGNKLAC 175 (456)
T ss_pred CCcCceEeCCHHHHHHHHHHHHHhCCCCEEEEECCChHHHhcCCHHHHHHHHHHHhCCCEEEEECCCCccchhHHHHHHH
Confidence 455677777666666666655442 234444444322221 1111011111122222222332 235566666
Q ss_pred HHHHHhHHhhhhh-----ccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEc
Q psy15555 309 RAMYQLRQIISEE-----LWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHA 383 (488)
Q Consensus 309 ~a~~~l~~~~~~~-----~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~ 383 (488)
+++-......... ...+-.+-|+|..+... -..+++++.++.|+..+..+.+..+.+|+...-+ |.+-+..
T Consensus 176 ~al~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~---d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~~-A~lniv~ 251 (456)
T TIGR01283 176 DALLKHVIGTREPEPIPVGTTVHDINLIGEFNVAG---EFWHVKPLLEKLGIRVLATITGDSRYAEVQTAHR-AKLNMVQ 251 (456)
T ss_pred HHHHHHHhccCCcccccccCCCCcEEEEcCCCCcc---cHHHHHHHHHHcCCeEEEEeCCCCcHHHHHhccc-CcEEEEE
Confidence 6655433211000 00134577788654332 2368999999999987777887766677765444 3433322
Q ss_pred CCCCcCCccHHHHH--HcCCcEEEe
Q psy15555 384 MWNEHFGIGIVECM--AAGLIMIAH 406 (488)
Q Consensus 384 s~~e~~g~~~lEa~--a~G~PvI~~ 406 (488)
+ ...+..+.|.| -+|+|.+..
T Consensus 252 ~--~~~~~~~a~~L~e~~GiP~~~~ 274 (456)
T TIGR01283 252 C--SKSMINLARKMEEKYGIPYFEG 274 (456)
T ss_pred C--HhHHHHHHHHHHHHcCCCEEec
Confidence 1 11235667777 579999864
No 289
>KOG2648|consensus
Probab=48.50 E-value=46 Score=32.50 Aligned_cols=78 Identities=12% Similarity=0.064 Sum_probs=52.2
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCC-------cCC---ccHH
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNE-------HFG---IGIV 394 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e-------~~g---~~~l 394 (488)
+.-=+|+|.---..+.+-.+.++++++..|....+..+|.+....+.. +...|+||.-+... .|. +++.
T Consensus 267 ~~iGlivGTLG~qg~~~vl~~L~~~~~~~Gkk~y~l~~g~inPaKLAn-F~eIDvfV~iaCp~lsid~s~~F~kPiltPf 345 (453)
T KOG2648|consen 267 RTIGLIVGTLGRQGNREVLEHLRKLLKAAGKKSYVLALGEINPAKLAN-FPEIDVFVQIACPRLSIDWSKEFYKPLLTPF 345 (453)
T ss_pred CeEEEEEecccccCCHHHHHHHHHHHHHcCCceEEEEecCCCHHHhcC-CccccEEEEEeCcccchhhhhhhccccccHH
Confidence 344567775433445578899999999999888889999987766655 45599888654222 121 3456
Q ss_pred HHHHcCCcE
Q psy15555 395 ECMAAGLIM 403 (488)
Q Consensus 395 Ea~a~G~Pv 403 (488)
||-.+.-|+
T Consensus 346 Ea~~Al~~~ 354 (453)
T KOG2648|consen 346 EAEVALNPI 354 (453)
T ss_pred HHHHhcCcc
Confidence 666655554
No 290
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=48.33 E-value=77 Score=26.60 Aligned_cols=84 Identities=15% Similarity=0.079 Sum_probs=46.7
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCc------EEEecCCCh-------HHHHHHHHhCcEEEEcC---CCCc
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENN------VEFKVNLPY-------EDMKKEFSEGLIGLHAM---WNEH 388 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~------v~~~g~~~~-------~el~~~~~~ad~~v~~s---~~e~ 388 (488)
..++.++|.--..+..+..+++++++.+.|.... +-..+.-+. +.=...+.+||++|..- ..+.
T Consensus 4 ~~~IYLAGP~F~~~~i~~~d~lkall~~~gf~~~~P~d~~~~~~~~~p~~~a~~i~e~d~~~i~~aD~vla~ld~fr~~~ 83 (172)
T COG3613 4 KKKIYLAGPVFRPDEIELRDELKALLLEAGFEVLSPFDEAEPIAETGPNETAEKIYEADIKLIDQADIVLANLDPFRPDP 83 (172)
T ss_pred cceEEEecCcCCHHHHHHHHHHHHHHHHcCCeeeCcchhccCccccCccHHHHHHHHHHHHHHhhcCEEEEecCCCCCCC
Confidence 3466777764333444666777888887775311 111111111 11234677899655422 2223
Q ss_pred CCccHHH---HHHcCCcEEEeCC
Q psy15555 389 FGIGIVE---CMAAGLIMIAHKS 408 (488)
Q Consensus 389 ~g~~~lE---a~a~G~PvI~~~~ 408 (488)
=+-+..| |.|.|+||++...
T Consensus 84 DsGTa~E~GYa~AlgKPv~~~~~ 106 (172)
T COG3613 84 DSGTAFELGYAIALGKPVYAYRK 106 (172)
T ss_pred CCcchHHHHHHHHcCCceEEEee
Confidence 3446666 6889999999765
No 291
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=47.44 E-value=1.4e+02 Score=23.58 Aligned_cols=75 Identities=15% Similarity=0.124 Sum_probs=46.7
Q ss_pred ChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhC-cEEE
Q psy15555 303 DHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEG-LIGL 381 (488)
Q Consensus 303 ~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~a-d~~v 381 (488)
|....++++++ ..++++|+...-.. .+..+.+..++++.+++ +.+.+.- +|+..+.... .+.+
T Consensus 34 G~~~v~kaikk----------gkakLVilA~D~s~--~~i~~~~~~lc~~~~Vp--~~~~~tk--~eLG~a~Gk~~~~sv 97 (122)
T PRK04175 34 GTNETTKAVER----------GIAKLVVIAEDVDP--EEIVAHLPLLCEEKKIP--YVYVPSK--KDLGKAAGLEVGAAA 97 (122)
T ss_pred cHHHHHHHHHc----------CCccEEEEeCCCCh--HHHHHHHHHHHHHcCCC--EEEECCH--HHHHHHhCCCCCeEE
Confidence 56666666554 35677776654321 14457889999999886 6777754 9999998876 3333
Q ss_pred EcCCCCcCCccH
Q psy15555 382 HAMWNEHFGIGI 393 (488)
Q Consensus 382 ~~s~~e~~g~~~ 393 (488)
..-..+++.-.+
T Consensus 98 vaI~d~g~a~~~ 109 (122)
T PRK04175 98 AAIVDAGKAKEL 109 (122)
T ss_pred EEEechhhhHHH
Confidence 333334444333
No 292
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=47.04 E-value=1.8e+02 Score=24.76 Aligned_cols=45 Identities=13% Similarity=0.008 Sum_probs=29.9
Q ss_pred HHHHHHHHhCcEEEEcCCCCcCCc--cHHHHHH------cCCcEEEeCCCCCccc
Q psy15555 368 EDMKKEFSEGLIGLHAMWNEHFGI--GIVECMA------AGLIMIAHKSGGPKMD 414 (488)
Q Consensus 368 ~el~~~~~~ad~~v~~s~~e~~g~--~~lEa~a------~G~PvI~~~~~~~~~e 414 (488)
+....+...||+||.-. .++|. -++|++. .++||+..+..+..+.
T Consensus 88 ~Rk~~m~~~sda~I~lP--GG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~ 140 (178)
T TIGR00730 88 ERKAMMAELADAFIAMP--GGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDG 140 (178)
T ss_pred HHHHHHHHhCCEEEEcC--CCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHH
Confidence 45667788899776532 34443 3677775 4999999887655533
No 293
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=46.51 E-value=2e+02 Score=26.33 Aligned_cols=107 Identities=10% Similarity=-0.024 Sum_probs=60.5
Q ss_pred eeccCCCCChHHHHHHHHHhHHhhhhhccCceEE--EEEecC----CCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChH
Q psy15555 295 VAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKL--IFIGST----RNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYE 368 (488)
Q Consensus 295 ~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l--~ivG~~----~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 368 (488)
++....-+..+.+++..+++++.. .++.. +.-++. ..+...+-.+.+++.+++.|++--.... +..
T Consensus 29 IAGpc~ie~~~~~~~~A~~lk~~~-----~k~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~~Gl~~~t~~~---d~~ 100 (260)
T TIGR01361 29 IAGPCSVESEEQIMETARFVKEAG-----AKILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADEHGLPVVTEVM---DPR 100 (260)
T ss_pred EEeCCccCCHHHHHHHHHHHHHHH-----HHhccCceecCCCCCccccccHHHHHHHHHHHHHHhCCCEEEeeC---Chh
Confidence 444445566777888888877553 12111 111111 1111236668899999999986322222 334
Q ss_pred HHHHHHHhCcEEEEcCCCCcCCccHHHH-HHcCCcEEEeCCCC
Q psy15555 369 DMKKEFSEGLIGLHAMWNEHFGIGIVEC-MAAGLIMIAHKSGG 410 (488)
Q Consensus 369 el~~~~~~ad~~v~~s~~e~~g~~~lEa-~a~G~PvI~~~~~~ 410 (488)
.+..+...+|++-.+|. +..-..++++ ...|+||+.+....
T Consensus 101 ~~~~l~~~~d~lkI~s~-~~~n~~LL~~~a~~gkPVilk~G~~ 142 (260)
T TIGR01361 101 DVEIVAEYADILQIGAR-NMQNFELLKEVGKQGKPVLLKRGMG 142 (260)
T ss_pred hHHHHHhhCCEEEECcc-cccCHHHHHHHhcCCCcEEEeCCCC
Confidence 55555556898877774 2223445554 45699999987633
No 294
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=46.23 E-value=41 Score=28.01 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=28.9
Q ss_pred HHHHHHHh-CcEEEEcC----CCCcCCc--cHHHHHHcCCcEEEeCCCCC
Q psy15555 369 DMKKEFSE-GLIGLHAM----WNEHFGI--GIVECMAAGLIMIAHKSGGP 411 (488)
Q Consensus 369 el~~~~~~-ad~~v~~s----~~e~~g~--~~lEa~a~G~PvI~~~~~~~ 411 (488)
.+...+.. +|++|..- ..++.|+ .+.||++.|+||++.=...+
T Consensus 85 ~l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~~ 134 (159)
T PF10649_consen 85 ALRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPRN 134 (159)
T ss_pred HHHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHHH
Confidence 45555555 89777654 2345554 57899999999999755433
No 295
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=46.19 E-value=83 Score=26.55 Aligned_cols=33 Identities=33% Similarity=0.391 Sum_probs=23.1
Q ss_pred ccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEE
Q psy15555 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIY 91 (488)
Q Consensus 52 ~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~ 91 (488)
.+||.++ ||.+-++..+++.|.+++|++.++-+
T Consensus 46 ~~~v~ll-------G~~~~~~~~~~~~l~~~yp~l~i~g~ 78 (171)
T cd06533 46 GLRVFLL-------GAKPEVLEKAAERLRARYPGLKIVGY 78 (171)
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 4566654 25666777777888888888887654
No 296
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=45.69 E-value=76 Score=25.69 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhC----c-EEEEcCCCCcCCccHHHHHHc-CCcEEEeC
Q psy15555 344 KDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEG----L-IGLHAMWNEHFGIGIVECMAA-GLIMIAHK 407 (488)
Q Consensus 344 ~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~a----d-~~v~~s~~e~~g~~~lEa~a~-G~PvI~~~ 407 (488)
+.+++.+.++|+. +.+...=..+|+.+++..+ | +++.|..+...+..+.+|++. ++|+|=-.
T Consensus 32 ~~~~~~a~~~g~~--v~~~QSN~EGelid~I~~a~~~~dgiIINpga~thtS~Ai~DAl~~~~~P~vEVH 99 (140)
T PF01220_consen 32 QKCKETAAELGVE--VEFFQSNHEGELIDWIHEARDDVDGIIINPGAYTHTSIAIRDALKAISIPVVEVH 99 (140)
T ss_dssp HHHHHHHHHTTEE--EEEEE-SSHHHHHHHHHHHTCTTSEEEEE-GGGGHT-HHHHHHHHCCTS-EEEEE
T ss_pred HHHHHHHHHCCCe--EEEEecCCHHHHHHHHHHHHhhCCEEEEccchhccccHHHHHHHHcCCCCEEEEE
Confidence 4555666666643 5555544556777766654 6 677787777888999998865 88988743
No 297
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=45.44 E-value=2.2e+02 Score=25.16 Aligned_cols=83 Identities=11% Similarity=0.118 Sum_probs=49.5
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCC-----ChHHHHHHHHhCcE-EEEcC--------CCC-cC
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNL-----PYEDMKKEFSEGLI-GLHAM--------WNE-HF 389 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~-----~~~el~~~~~~ad~-~v~~s--------~~e-~~ 389 (488)
+.++.+++..... ..++.+++.+..+++|.. .+.++..- ...++.+.+..||+ ++.+- +.+ +.
T Consensus 29 ~~~i~~iptA~~~-~~~~~~~~~~~~~~lG~~-~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l 106 (217)
T cd03145 29 GARIVVIPAASEE-PAEVGEEYRDVFERLGAR-EVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPL 106 (217)
T ss_pred CCcEEEEeCCCcC-hhHHHHHHHHHHHHcCCc-eeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChH
Confidence 5566777654221 236677888888888864 34443322 34678899999994 45432 111 11
Q ss_pred CccHHHHHHcCCcEEEeCCC
Q psy15555 390 GIGIVECMAAGLIMIAHKSG 409 (488)
Q Consensus 390 g~~~lEa~a~G~PvI~~~~~ 409 (488)
-..+-++...|.|++.+..|
T Consensus 107 ~~~l~~~~~~G~v~~G~SAG 126 (217)
T cd03145 107 LDALRKVYRGGVVIGGTSAG 126 (217)
T ss_pred HHHHHHHHHcCCEEEEccHH
Confidence 12355667789888876543
No 298
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=45.24 E-value=1.2e+02 Score=25.16 Aligned_cols=80 Identities=11% Similarity=0.239 Sum_probs=46.8
Q ss_pred CeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCC--CCCcHHHHHHHHHHHHhcCCCCcEEEecCCC
Q psy15555 289 PVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTR--NEEDEVCVKDMQDLCKHLSLENNVEFKVNLP 366 (488)
Q Consensus 289 ~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~--~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 366 (488)
...+.++|- .+ + .+...+..+..+. +..+.+++... ...+.+..+..++.+++.| ..+.+.
T Consensus 2 gl~i~~vGD-~~--~--rv~~Sl~~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g--~~i~~~---- 64 (158)
T PF00185_consen 2 GLKIAYVGD-GH--N--RVAHSLIELLAKF------GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG--GKITIT---- 64 (158)
T ss_dssp TEEEEEESS-TT--S--HHHHHHHHHHHHT------TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT--TEEEEE----
T ss_pred CCEEEEECC-CC--C--hHHHHHHHHHHHc------CCEEEEECCCcccCCCCHHHHHHHHHHHHHhC--CCeEEE----
Confidence 467889993 11 2 4455555555554 45577766432 1222345566666666665 346555
Q ss_pred hHHHHHHHHhCcEEEEcCCC
Q psy15555 367 YEDMKKEFSEGLIGLHAMWN 386 (488)
Q Consensus 367 ~~el~~~~~~ad~~v~~s~~ 386 (488)
+++.+.++.||++...++.
T Consensus 65 -~~~~e~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 65 -DDIEEALKGADVVYTDRWQ 83 (158)
T ss_dssp -SSHHHHHTT-SEEEEESSS
T ss_pred -eCHHHhcCCCCEEEEcCcc
Confidence 4566788999988777765
No 299
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=45.09 E-value=1.1e+02 Score=32.65 Aligned_cols=37 Identities=14% Similarity=0.022 Sum_probs=29.6
Q ss_pred HHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEE
Q psy15555 368 EDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIA 405 (488)
Q Consensus 368 ~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~ 405 (488)
..+.+.++.+|+|++.|....|.--+++.|+ ..|+|.
T Consensus 245 ~~l~~~i~~~~v~iG~s~~g~~~~~~v~~M~-~~piif 281 (752)
T PRK07232 245 RTLAEAIEGADVFLGLSAAGVLTPEMVKSMA-DNPIIF 281 (752)
T ss_pred CCHHHHHcCCCEEEEcCCCCCCCHHHHHHhc-cCCEEE
Confidence 3688888899999999975556667888887 478887
No 300
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=44.90 E-value=1.4e+02 Score=26.83 Aligned_cols=55 Identities=9% Similarity=0.042 Sum_probs=36.5
Q ss_pred CCcEEEecC-CCh---HHHHHHHHhCc-EEEEcCCCCcCCcc-HHHHHHcCCcEEEeCCCC
Q psy15555 356 ENNVEFKVN-LPY---EDMKKEFSEGL-IGLHAMWNEHFGIG-IVECMAAGLIMIAHKSGG 410 (488)
Q Consensus 356 ~~~v~~~g~-~~~---~el~~~~~~ad-~~v~~s~~e~~g~~-~lEa~a~G~PvI~~~~~~ 410 (488)
.++|++.|. +|. +...+..+.|| +++.++....+|.. +.+.+..|.|+|.-|...
T Consensus 151 rP~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~ 211 (235)
T cd01408 151 KPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREP 211 (235)
T ss_pred cCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeCCC
Confidence 567888876 454 34446678899 45556555555543 567777899999877643
No 301
>PRK07283 hypothetical protein; Provisional
Probab=44.41 E-value=1.1e+02 Score=23.10 Aligned_cols=63 Identities=14% Similarity=0.168 Sum_probs=38.4
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHH
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVE 395 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lE 395 (488)
.++++|+...... +..+.+.+.++.++++ +.... +.+|+...+..-.. +..-..++|.-.+++
T Consensus 34 k~~lVi~A~Das~---~~~kk~~~~~~~~~Vp--~~~~~--t~~eLG~a~Gk~~~-vvai~d~g~a~~l~~ 96 (98)
T PRK07283 34 QAKLVFLANDAGP---NLTKKVTDKSNYYQVE--VSTVF--STLELSAAVGKPRK-VLAVTDAGFSKKMRS 96 (98)
T ss_pred CccEEEEeCCCCH---HHHHHHHHHHHHcCCC--EEEeC--CHHHHHHHhCCCce-EEEEeChhHHHHHHH
Confidence 5677776654322 5557777888777654 33333 55899999988433 333355666655544
No 302
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=44.37 E-value=24 Score=33.20 Aligned_cols=78 Identities=9% Similarity=-0.042 Sum_probs=44.2
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEE
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMI 404 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI 404 (488)
+.--+|+|.-......+..+.+++++++.|-...+...|.++.+.+..+ ...|+||..+-.+ +++.+.-..-+|||
T Consensus 210 ~~~GIiv~tl~~q~~~~~~~~l~~~l~~~gkk~y~~~~~~i~~~kL~nf-~eid~fV~~aCPr---~~idd~~~f~kPvl 285 (307)
T PF01866_consen 210 KTFGIIVGTLGGQGYLELIKRLKKLLKKAGKKSYTLSVGEINPAKLANF-PEIDAFVQIACPR---LSIDDSKDFYKPVL 285 (307)
T ss_dssp -EEEEEEE-STTT--HHHHHHHHHHHHHTT-EEEEEEESS--GGGGTTS----SEEEE-S-TH---HHHT--S--SS-EE
T ss_pred CEEEEEEecCCCCCCHHHHHHHHHHHHHcCCEEEEEEECCCCHHHHhcC-cccCEEEEecCCC---cccCchhhcCCccc
Confidence 4456778865555556777889999999887777788899888777776 5799999877443 24555667777777
Q ss_pred Ee
Q psy15555 405 AH 406 (488)
Q Consensus 405 ~~ 406 (488)
+.
T Consensus 286 tP 287 (307)
T PF01866_consen 286 TP 287 (307)
T ss_dssp -H
T ss_pred CH
Confidence 53
No 303
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=44.23 E-value=39 Score=26.99 Aligned_cols=40 Identities=13% Similarity=0.064 Sum_probs=26.8
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCC-eeEEEEe
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPD-YKIYIYT 92 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~-~~v~~~~ 92 (488)
||++++....+.++-..+.+..+++++.+.+|+ +.|+++.
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~ 41 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQ 41 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEeh
Confidence 788887654443232337889999999998776 3555543
No 304
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=44.16 E-value=1.2e+02 Score=26.51 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=21.6
Q ss_pred hCc-EEEEcCCCCcCCcc-HHHHHHcCCcEEEeCCCCC
Q psy15555 376 EGL-IGLHAMWNEHFGIG-IVECMAAGLIMIAHKSGGP 411 (488)
Q Consensus 376 ~ad-~~v~~s~~e~~g~~-~lEa~a~G~PvI~~~~~~~ 411 (488)
.+| +|+.+....+++.. -+| -..|+|||+||....
T Consensus 179 ~~DaiFiSCTnlRt~eii~~lE-~~~G~PVvsSN~AT~ 215 (238)
T COG3473 179 DADAIFISCTNLRTFEIIEKLE-RDTGVPVVSSNQATL 215 (238)
T ss_pred CCCeEEEEeeccccHHHHHHHH-HHhCCceeeccHHHH
Confidence 467 67776554444432 233 367999999987533
No 305
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=43.68 E-value=1.8e+02 Score=26.81 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=34.0
Q ss_pred ccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHHc
Q psy15555 391 IGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILH 444 (488)
Q Consensus 391 ~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~ 444 (488)
.-+.-|.++|+.+|.-..+....+-+... ...+++++..++.+.+.+++.
T Consensus 223 ~Di~aA~~AG~~~I~v~~g~~~~~~l~~~----~ad~~i~~~~eL~~~~~~~~~ 272 (273)
T PRK13225 223 RDVEAARQVGLIAVAVTWGFNDRQSLVAA----CPDWLLETPSDLLQAVTQLMR 272 (273)
T ss_pred HHHHHHHHCCCeEEEEecCCCCHHHHHHC----CCCEEECCHHHHHHHHHHHhc
Confidence 45677888899999876654432222222 456788899999888877764
No 306
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=43.65 E-value=1.2e+02 Score=28.25 Aligned_cols=65 Identities=22% Similarity=0.236 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC-CChHHHHHHHHhCcEEE
Q psy15555 303 DHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN-LPYEDMKKEFSEGLIGL 381 (488)
Q Consensus 303 ~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-~~~~el~~~~~~ad~~v 381 (488)
+.+...+|+..+.++. ++..++|.++.+ +-+++.+... .+.+.+.+. -+.+|+. +++.||.+|
T Consensus 189 ~~~Yy~~Ai~~i~~~~-----~~~~f~ifSDD~--------~w~k~~l~~~--~~~~~~~~~~~~~~Dl~-lms~C~~~I 252 (298)
T PF01531_consen 189 DKDYYKKAIEYIREKV-----KNPKFFIFSDDI--------EWCKENLKFS--NGDVYFSGNNSPYEDLY-LMSQCKHFI 252 (298)
T ss_pred CHHHHHHHHHHHHHhC-----CCCEEEEEcCCH--------HHHHHHHhhc--CCcEEEECCCCHHHHHH-HHHhCCcEE
Confidence 4567789999998887 789999999765 3344444332 234555554 4567776 689999666
Q ss_pred Ec
Q psy15555 382 HA 383 (488)
Q Consensus 382 ~~ 383 (488)
.+
T Consensus 253 is 254 (298)
T PF01531_consen 253 IS 254 (298)
T ss_pred EC
Confidence 54
No 307
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=43.64 E-value=1.2e+02 Score=27.17 Aligned_cols=108 Identities=8% Similarity=0.010 Sum_probs=69.2
Q ss_pred EEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCC--ChH
Q psy15555 291 KIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNL--PYE 368 (488)
Q Consensus 291 ~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~ 368 (488)
.++++|-+-..-|...+-+-+..+++++ ++.|+|+........--.-++.-+...+.|. ++.=.|.- ++.
T Consensus 2 riLfiGDvvGk~Gr~~v~~~Lp~lk~ky------k~dfvI~N~ENaa~G~Git~k~y~~l~~~G~--dviT~GNH~wd~~ 73 (266)
T COG1692 2 RILFIGDVVGKPGRKAVKEHLPQLKSKY------KIDFVIVNGENAAGGFGITEKIYKELLEAGA--DVITLGNHTWDQK 73 (266)
T ss_pred eEEEEecccCcchHHHHHHHhHHHHHhh------cCcEEEEcCccccCCcCCCHHHHHHHHHhCC--CEEecccccccch
Confidence 5788998888888888888888898886 6788888754221111122455555566664 24444432 668
Q ss_pred HHHHHHHhCcEEEEcCC----CCcCCccHHHHHHcCCcEEEeCC
Q psy15555 369 DMKKEFSEGLIGLHAMW----NEHFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 369 el~~~~~~ad~~v~~s~----~e~~g~~~lEa~a~G~PvI~~~~ 408 (488)
|+.+++...+.++=|.. ..+-|..+++ ..|+-+-+.+.
T Consensus 74 ei~~~i~~~~~ilRP~N~p~~~~G~G~~~f~--~ng~ki~V~Nl 115 (266)
T COG1692 74 EILDFIDNADRILRPANYPDGTPGKGSRIFK--INGKKLAVINL 115 (266)
T ss_pred HHHHHhhcccceeccCCCCCCCCcceEEEEE--eCCcEEEEEEe
Confidence 99999999998887763 2344444554 44555555444
No 308
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=43.48 E-value=1.2e+02 Score=21.86 Aligned_cols=57 Identities=9% Similarity=0.142 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh
Q psy15555 303 DHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE 376 (488)
Q Consensus 303 ~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ 376 (488)
|....++++++ ...+++|+...-+. ...+.+..++++.+++ +.+.+ +..|+......
T Consensus 15 G~~~v~kai~~----------gkaklViiA~D~~~---~~~~~i~~~c~~~~Vp--~~~~~--s~~eLG~a~G~ 71 (82)
T PRK13602 15 GTKQTVKALKR----------GSVKEVVVAEDADP---RLTEKVEALANEKGVP--VSKVD--SMKKLGKACGI 71 (82)
T ss_pred cHHHHHHHHHc----------CCeeEEEEECCCCH---HHHHHHHHHHHHcCCC--EEEEC--CHHHHHHHHCC
Confidence 55555666543 36778877765432 6678889999998875 66666 44888876644
No 309
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=43.42 E-value=44 Score=30.43 Aligned_cols=44 Identities=9% Similarity=0.064 Sum_probs=31.5
Q ss_pred HHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCC
Q psy15555 368 EDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGP 411 (488)
Q Consensus 368 ~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~ 411 (488)
+++.+++..+|+++-.+..+...-.+..++..|+|+++...+..
T Consensus 52 ~dl~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigttG~s 95 (257)
T PRK00048 52 DDLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFT 95 (257)
T ss_pred CCHHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 45666666899888666555444567889999999999865544
No 310
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=43.35 E-value=1.3e+02 Score=21.88 Aligned_cols=46 Identities=15% Similarity=0.352 Sum_probs=32.4
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE 376 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ 376 (488)
.+++++|+...-. ++..+.+.++++..+++ +.+.+.. .||......
T Consensus 23 gkakLViiA~Da~---~~~~k~i~~~c~~~~Vp--v~~~~t~--~eLG~A~G~ 68 (82)
T PRK13601 23 CNVLQVYIAKDAE---EHVTKKIKELCEEKSIK--IVYIDTM--KELGVMCGI 68 (82)
T ss_pred CCeeEEEEeCCCC---HHHHHHHHHHHHhCCCC--EEEeCCH--HHHHHHHCC
Confidence 3678888776543 26678889999988876 5565544 888877654
No 311
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=43.26 E-value=80 Score=25.53 Aligned_cols=95 Identities=16% Similarity=0.181 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhC----c-EEEEcCCCCcCCccHHHHHHc-CCcEEEeCCCCC--cc-
Q psy15555 343 VKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEG----L-IGLHAMWNEHFGIGIVECMAA-GLIMIAHKSGGP--KM- 413 (488)
Q Consensus 343 ~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~a----d-~~v~~s~~e~~g~~~lEa~a~-G~PvI~~~~~~~--~~- 413 (488)
.+.+++.++++|+ .+.+...=..+|+.+++..| | +++.|..+-+.+..+.+|++. ++|+|=-..... ++
T Consensus 30 ~~~l~~~a~~~g~--~v~~~QSN~Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~~~~P~VEVHiSNi~aRE~ 107 (140)
T cd00466 30 EALLRELAAELGV--EVEFFQSNHEGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAAVSIPVIEVHISNIHAREE 107 (140)
T ss_pred HHHHHHHHHHcCC--EEEEEeeCcHHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHcCCCCEEEEecCCcccccc
Confidence 3455555555554 35555544556777777665 5 566776777778889998764 899986333222 21
Q ss_pred ----ceeccCCCccccceecC-CHHHHHHHHHHHH
Q psy15555 414 ----DIVIEDPETCRNGFLAC-DEVEYAQTIKLIL 443 (488)
Q Consensus 414 ----eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll 443 (488)
.++.+. ..|.++. -.+...-++..++
T Consensus 108 fR~~S~is~~----~~G~I~G~G~~gY~lAl~~~~ 138 (140)
T cd00466 108 FRHHSVISPV----ATGVIAGLGADGYRLALEALA 138 (140)
T ss_pred cccccccccc----eeEEEEeCCHHHHHHHHHHHH
Confidence 223333 4455554 5666666665554
No 312
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=43.22 E-value=1.4e+02 Score=24.09 Aligned_cols=99 Identities=9% Similarity=0.038 Sum_probs=54.7
Q ss_pred eEEEcCCCCc--hhhhccCCCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHH
Q psy15555 266 TYKLYPPCDT--EDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCV 343 (488)
Q Consensus 266 ~~vi~~~~d~--~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~ 343 (488)
+.+++-|.+. +.+..... +.++.++.++.+.. .....+.+...++++... +++++ ++|+.+.. ..+..
T Consensus 32 ~eVi~LG~~vp~e~i~~~a~---~~~~d~V~lS~~~~-~~~~~~~~~~~~L~~~~~----~~~~i-~vGG~~~~-~~~~~ 101 (137)
T PRK02261 32 FEVINLGVMTSQEEFIDAAI---ETDADAILVSSLYG-HGEIDCRGLREKCIEAGL----GDILL-YVGGNLVV-GKHDF 101 (137)
T ss_pred CEEEECCCCCCHHHHHHHHH---HcCCCEEEEcCccc-cCHHHHHHHHHHHHhcCC----CCCeE-EEECCCCC-CccCh
Confidence 5666666543 33332221 23445555555443 344455666677766631 46654 44544311 11233
Q ss_pred HHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh
Q psy15555 344 KDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE 376 (488)
Q Consensus 344 ~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ 376 (488)
++..+.++++|+. ..|.+..+.+++..++..
T Consensus 102 ~~~~~~l~~~G~~--~vf~~~~~~~~i~~~l~~ 132 (137)
T PRK02261 102 EEVEKKFKEMGFD--RVFPPGTDPEEAIDDLKK 132 (137)
T ss_pred HHHHHHHHHcCCC--EEECcCCCHHHHHHHHHH
Confidence 6677788888863 667767688888877654
No 313
>PRK08005 epimerase; Validated
Probab=43.06 E-value=1.8e+02 Score=25.64 Aligned_cols=52 Identities=4% Similarity=-0.076 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcC-CccHH
Q psy15555 343 VKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHF-GIGIV 394 (488)
Q Consensus 343 ~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~-g~~~l 394 (488)
..+.-+.+++.|....+.+-+..|-+.+..++...|.++.-|-..|| |...+
T Consensus 95 ~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~ 147 (210)
T PRK08005 95 PSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFI 147 (210)
T ss_pred HHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccceec
Confidence 36677888899988888888888889999999999944443444443 45443
No 314
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=42.94 E-value=44 Score=26.81 Aligned_cols=56 Identities=7% Similarity=0.118 Sum_probs=34.2
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCC----------------CcEEEecCCChHHHHHHHHhCc-EEEEcC
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLE----------------NNVEFKVNLPYEDMKKEFSEGL-IGLHAM 384 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~----------------~~v~~~g~~~~~el~~~~~~ad-~~v~~s 384 (488)
-++++|.+-... ...+++++++++.|.+ ..+=+.|........++++.|| +++.+.
T Consensus 14 P~il~G~g~~~~--~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~ 86 (137)
T PF00205_consen 14 PVILAGRGARRS--GAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAIGT 86 (137)
T ss_dssp EEEEE-HHHHHT--TCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEESS
T ss_pred EEEEEcCCcChh--hHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEECC
Confidence 467788663110 2347888888888774 1222344445678899999999 444444
No 315
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=42.78 E-value=2.3e+02 Score=24.74 Aligned_cols=127 Identities=13% Similarity=0.056 Sum_probs=62.2
Q ss_pred HHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCC
Q psy15555 308 LRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNE 387 (488)
Q Consensus 308 l~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e 387 (488)
...++.|.+. ...++++..... +++++++++ .++.+...-. . ...+..+++++..+..+
T Consensus 22 ~rk~~~Ll~~-------ga~VtVvsp~~~-------~~l~~l~~~----~~i~~~~~~~-~--~~dl~~~~lVi~at~d~ 80 (205)
T TIGR01470 22 LRKARLLLKA-------GAQLRVIAEELE-------SELTLLAEQ----GGITWLARCF-D--ADILEGAFLVIAATDDE 80 (205)
T ss_pred HHHHHHHHHC-------CCEEEEEcCCCC-------HHHHHHHHc----CCEEEEeCCC-C--HHHhCCcEEEEECCCCH
Confidence 4445555554 455666654321 556666543 2466654321 1 23456788655544332
Q ss_pred -cCCccHHHHHHcCCcEEEeCCCCCc----cceeccCCCccccceec--C----C---HHHHHHHHHHHHccCHHHHHHH
Q psy15555 388 -HFGIGIVECMAAGLIMIAHKSGGPK----MDIVIEDPETCRNGFLA--C----D---EVEYAQTIKLILHLSQDTKTRI 453 (488)
Q Consensus 388 -~~g~~~lEa~a~G~PvI~~~~~~~~----~eiv~~~~~~~~~g~~~--~----~---~~~l~~~i~~ll~~~~~~~~~~ 453 (488)
.--...-+|-..|+||-+.+..... ..++..+ ++.+ . + ...+.+.|++++..+-+...++
T Consensus 81 ~ln~~i~~~a~~~~ilvn~~d~~e~~~f~~pa~~~~g------~l~iaisT~G~sP~la~~lr~~ie~~l~~~~~~~~~~ 154 (205)
T TIGR01470 81 ELNRRVAHAARARGVPVNVVDDPELCSFIFPSIVDRS------PVVVAISSGGAAPVLARLLRERIETLLPPSLGDLATL 154 (205)
T ss_pred HHHHHHHHHHHHcCCEEEECCCcccCeEEEeeEEEcC------CEEEEEECCCCCcHHHHHHHHHHHHhcchhHHHHHHH
Confidence 2222345666889999766554332 1234333 2222 1 2 3456666666664233334444
Q ss_pred HHHHHHHH
Q psy15555 454 SQNAVSSV 461 (488)
Q Consensus 454 ~~~a~~~~ 461 (488)
....++.+
T Consensus 155 ~~~~R~~~ 162 (205)
T TIGR01470 155 AATWRDAV 162 (205)
T ss_pred HHHHHHHH
Confidence 44555555
No 316
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=42.72 E-value=67 Score=24.80 Aligned_cols=56 Identities=9% Similarity=0.079 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCCCcEEEecCCChHHHHHHHH--hCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCC
Q psy15555 344 KDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS--EGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 344 ~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~--~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~ 408 (488)
+..++..++.+.+ .. .++.++++ ..|+++..+....-.-.+.+++..|++|++-..
T Consensus 37 ~~~~~~~~~~~~~----~~-----~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP 94 (120)
T PF01408_consen 37 ERAEAFAEKYGIP----VY-----TDLEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEKP 94 (120)
T ss_dssp HHHHHHHHHTTSE----EE-----SSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEESS
T ss_pred HHHHHHHHHhccc----ch-----hHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEcC
Confidence 4455556666643 22 23445566 678555554443334467899999999998654
No 317
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=42.52 E-value=1.8e+02 Score=23.48 Aligned_cols=55 Identities=9% Similarity=-0.075 Sum_probs=39.7
Q ss_pred EEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceec
Q psy15555 359 VEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVI 417 (488)
Q Consensus 359 v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~ 417 (488)
.++.|+-..+++.++...|.+++.- . +--+++.+...++|.|..+...-..|++.
T Consensus 48 l~v~~F~~~~kiQsli~darIVISH-a---G~GSIL~~~rl~kplIv~pr~s~y~elvD 102 (161)
T COG5017 48 LRVYGFDKEEKIQSLIHDARIVISH-A---GEGSILLLLRLDKPLIVVPRSSQYQELVD 102 (161)
T ss_pred cEEEeechHHHHHHHhhcceEEEec-c---CcchHHHHhhcCCcEEEEECchhHHHhhh
Confidence 5778887778999999999966642 1 22389999999999998766442234443
No 318
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=42.47 E-value=1e+02 Score=27.05 Aligned_cols=54 Identities=7% Similarity=-0.122 Sum_probs=35.5
Q ss_pred CCcEEEecC-CCh---HHHHHHHHhCc-EEEEcCCCCcCCcc--HHHHHHcCCcEEEeCCC
Q psy15555 356 ENNVEFKVN-LPY---EDMKKEFSEGL-IGLHAMWNEHFGIG--IVECMAAGLIMIAHKSG 409 (488)
Q Consensus 356 ~~~v~~~g~-~~~---~el~~~~~~ad-~~v~~s~~e~~g~~--~lEa~a~G~PvI~~~~~ 409 (488)
.++|++.|. +|. ++..+..+.|| +++.++.....+.. +-++...|.|+|.-|..
T Consensus 131 rP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~ 191 (206)
T cd01410 131 KDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQ 191 (206)
T ss_pred CCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCC
Confidence 567888887 464 36667778899 44555544443433 34677889999987664
No 319
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=42.04 E-value=68 Score=28.50 Aligned_cols=51 Identities=12% Similarity=0.032 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCc-EEEEcCCCCcCCccH
Q psy15555 343 VKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGL-IGLHAMWNEHFGIGI 393 (488)
Q Consensus 343 ~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad-~~v~~s~~e~~g~~~ 393 (488)
..+.-+.++++|....+.+-+..|-+.+..++...| +.+++.....+|.+.
T Consensus 99 ~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ~f 150 (223)
T PRK08745 99 VHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAF 150 (223)
T ss_pred HHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCccc
Confidence 366778889999888899999889999999999999 445544333334443
No 320
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=41.54 E-value=42 Score=26.82 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=18.2
Q ss_pred CceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 67 GGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 67 G~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
|--.-...++++|+++ ||+|.+.+..
T Consensus 10 Ghv~P~lala~~L~~r--Gh~V~~~~~~ 35 (139)
T PF03033_consen 10 GHVYPFLALARALRRR--GHEVRLATPP 35 (139)
T ss_dssp HHHHHHHHHHHHHHHT--T-EEEEEETG
T ss_pred hHHHHHHHHHHHHhcc--CCeEEEeecc
Confidence 3446678899999999 5666666654
No 321
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=41.33 E-value=1.4e+02 Score=21.80 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=39.3
Q ss_pred CChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHH
Q psy15555 302 KDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS 375 (488)
Q Consensus 302 k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~ 375 (488)
.|....++|+++ ....++++....+ +.....+..++++.+++ +.|.+.. .||.....
T Consensus 16 vG~kqt~Kai~k----------g~~~~v~iA~Da~---~~vv~~l~~lceek~Ip--~v~V~s~--~~LGkAcg 72 (84)
T PRK13600 16 VGLKETLKALKK----------DQVTSLIIAEDVE---VYLMTRVLSQINQKNIP--VSFFKSK--HALGKHVG 72 (84)
T ss_pred eeHHHHHHHHhc----------CCceEEEEeCCCC---HHHHHHHHHHHHHcCCC--EEEECCH--HHHHHHhC
Confidence 466666666543 3556666665433 35678999999999986 8888877 88877653
No 322
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=41.04 E-value=1.9e+02 Score=25.63 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCC
Q psy15555 343 VKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFG 390 (488)
Q Consensus 343 ~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g 390 (488)
..+.-+.+++.|....+.+-+..|.+.+..++...|.++.-|...+||
T Consensus 95 ~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfg 142 (220)
T PRK08883 95 VDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFG 142 (220)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCC
Confidence 467778889999888888888889999999999999544445444544
No 323
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=40.72 E-value=1e+02 Score=30.59 Aligned_cols=131 Identities=12% Similarity=0.155 Sum_probs=65.2
Q ss_pred CeEEEEee-ccCCCCChHHHHHHHHHhHHhhhhhccCceEEEE---EecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC
Q psy15555 289 PVKIISVA-QFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIF---IGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN 364 (488)
Q Consensus 289 ~~~i~~~g-~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~i---vG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 364 (488)
+.+++-.| .+.--+-...+-|..+.|.++. .++++-| +||-|. .+.-+..+.+++-.+ -
T Consensus 308 ~~VvIVPGYGmAvAqAQ~~v~el~~~L~~~G-----~~V~faIHPVAGRMPG--------HMNVLLAEa~VpYd~----~ 370 (463)
T PF02233_consen 308 KKVVIVPGYGMAVAQAQHAVAELADLLEERG-----VEVKFAIHPVAGRMPG--------HMNVLLAEANVPYDI----V 370 (463)
T ss_dssp SEEEEEESHHHHHCTTHHHHHHHHHHHHHTT------EEEEEE-TTSSSSTT--------HHHHHHHHCT--GGG----E
T ss_pred CceEEecCchHHHHHHHHHHHHHHHHHHhCC-----CEEEEEeccccCCCCC--------cceEEEEecCCCHHH----H
Confidence 34444444 2233345556666666666665 5677666 345552 233344554443211 1
Q ss_pred CChHHHHHHHHhCcE-EEEcC-------C-----CCcCCccHHHHHHcCCcEEEeCC--C---CCccceeccCCCccccc
Q psy15555 365 LPYEDMKKEFSEGLI-GLHAM-------W-----NEHFGIGIVECMAAGLIMIAHKS--G---GPKMDIVIEDPETCRNG 426 (488)
Q Consensus 365 ~~~~el~~~~~~ad~-~v~~s-------~-----~e~~g~~~lEa~a~G~PvI~~~~--~---~~~~eiv~~~~~~~~~g 426 (488)
...||+..-+...|+ +|.+. . .+-+|++++|..-+..-++.-.. . |....++-.. ++-
T Consensus 371 ~emdeiN~~f~~~Dv~lViGANDvVNPaA~~d~~SpI~GMPil~v~~ak~Viv~Krsm~~Gyagv~NpLF~~~----nt~ 446 (463)
T PF02233_consen 371 KEMDEINPDFPDTDVVLVIGANDVVNPAAREDPNSPIYGMPILEVWKAKQVIVIKRSMSPGYAGVDNPLFYKD----NTR 446 (463)
T ss_dssp EEHHHHGGGGGG-SEEEEES-SGGG-CHHCCSTTSTTTTSS---GGGSSEEEEEESSS--TTTS-S-GGGGST----TEE
T ss_pred hhhhhcccchhcCCEEEEeccccccCchhccCCCCCCCCCeecchhhcCeEEEEEcCCCCCCCCCCCcceecC----CcE
Confidence 133788888999994 44432 1 22478999999999888888443 2 2222344433 445
Q ss_pred eecCCHHHHHHHHH
Q psy15555 427 FLACDEVEYAQTIK 440 (488)
Q Consensus 427 ~~~~~~~~l~~~i~ 440 (488)
.++.|.++-.+.+.
T Consensus 447 MlfGDAk~~~~~l~ 460 (463)
T PF02233_consen 447 MLFGDAKKTLEELV 460 (463)
T ss_dssp EEES-HHHHHHHHH
T ss_pred EEeccHHHHHHHHH
Confidence 55667665555443
No 324
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=40.54 E-value=3.8e+02 Score=26.62 Aligned_cols=85 Identities=13% Similarity=0.074 Sum_probs=49.7
Q ss_pred cCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceec--CCHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcC
Q psy15555 388 HFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLA--CDEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFS 465 (488)
Q Consensus 388 ~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~--~~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s 465 (488)
.+|..+-=+...|+||..-..|...+++-... .+.-...+. .|...|.+.+.+... .+..+++.++..+ ..|+
T Consensus 254 rgG~aLs~~~~t~~PI~fig~Ge~v~Dle~f~-p~~~~~rilgmgDi~~L~ek~~~~~~--~~~~~~~~~k~~~--~~f~ 328 (429)
T TIGR01425 254 KGGGALSAVAATKSPIIFIGTGEHIDDFEIFK-TQPFISKLLGMGDIEGLIDKVQDLKL--DDNEKALIEKLKE--GTFT 328 (429)
T ss_pred CccHHhhhHHHHCCCeEEEcCCCChhhcCcCC-hHHHHHHHhcCCCcHHHHHHHHHhhh--HHHHHHHHHHHHh--CCCC
Confidence 46666777788899999977664433332211 000011111 288888888888764 3333344433322 6799
Q ss_pred HHHHHHHHHHHH
Q psy15555 466 MEEFKNGFLTFT 477 (488)
Q Consensus 466 ~~~~~~~~~~~~ 477 (488)
.+.+.+++.++-
T Consensus 329 l~D~~~q~~~i~ 340 (429)
T TIGR01425 329 LRDMYEQFQNLL 340 (429)
T ss_pred HHHHHHHHHHHH
Confidence 999888887653
No 325
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=40.49 E-value=1.9e+02 Score=24.54 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=24.0
Q ss_pred HHHHHHHHhCcEEEE-cC-CCCc---CCccHHHHHHcCCcEEEeCCC
Q psy15555 368 EDMKKEFSEGLIGLH-AM-WNEH---FGIGIVECMAAGLIMIAHKSG 409 (488)
Q Consensus 368 ~el~~~~~~ad~~v~-~s-~~e~---~g~~~lEa~a~G~PvI~~~~~ 409 (488)
.++.++++.||+++. .+ ..++ ++-..++.|--|.-+|-...|
T Consensus 83 ~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG 129 (178)
T PF02826_consen 83 VSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARG 129 (178)
T ss_dssp SSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSG
T ss_pred eehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccch
Confidence 467788999995543 33 3333 344567777766655554433
No 326
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=40.36 E-value=2.8e+02 Score=27.30 Aligned_cols=104 Identities=10% Similarity=0.064 Sum_probs=61.4
Q ss_pred CCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCCh
Q psy15555 288 GPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPY 367 (488)
Q Consensus 288 ~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 367 (488)
++.+|+.+++.+ +...+...++.+.+++ |+.++++.-..+.. .++.+.. .+-...+.+.+.-..
T Consensus 50 ~~~iW~Ha~s~G---e~~~~~~l~~~l~~~~-----~~~~i~~t~~t~~~------~~~~~~~--~~~~~~~~~~P~d~~ 113 (425)
T PRK05749 50 GPLIWFHAVSVG---ETRAAIPLIRALRKRY-----PDLPILVTTMTPTG------SERAQAL--FGDDVEHRYLPYDLP 113 (425)
T ss_pred CCeEEEEeCCHH---HHHHHHHHHHHHHHhC-----CCCcEEEeCCCccH------HHHHHHh--cCCCceEEEecCCcH
Confidence 456788877765 4566677777777776 78877665443321 1222111 111122455554444
Q ss_pred HHHHHHHHhC--cEEEEcCCCCcCCccHHHHHHcCCcEEEeCC
Q psy15555 368 EDMKKEFSEG--LIGLHAMWNEHFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 368 ~el~~~~~~a--d~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~ 408 (488)
..+..+++.- |+++.. ..|.++..+..+-..|+|++..+.
T Consensus 114 ~~~~~~l~~~~Pd~v~~~-~~~~~~~~l~~~~~~~ip~vl~~~ 155 (425)
T PRK05749 114 GAVRRFLRFWRPKLVIIM-ETELWPNLIAELKRRGIPLVLANA 155 (425)
T ss_pred HHHHHHHHhhCCCEEEEE-ecchhHHHHHHHHHCCCCEEEEec
Confidence 5677777654 565543 335667667778888999998643
No 327
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=40.28 E-value=3.2e+02 Score=25.64 Aligned_cols=96 Identities=5% Similarity=-0.025 Sum_probs=57.7
Q ss_pred EEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHH
Q psy15555 291 KIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDM 370 (488)
Q Consensus 291 ~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el 370 (488)
+|+..|+. ..++..+....++. .++++++.-..|..+. ..+.+.+.+.|++ ++++ ++..+
T Consensus 118 ~ILT~~~S------~tv~~~l~~a~~~~-----~~f~V~v~EsrP~~~G----~~~a~~L~~~gI~--vtlI---~Dsa~ 177 (301)
T TIGR00511 118 VVMTHCNS------EAALSVIKTAFEQG-----KDIEVIATETRPRKQG----HITAKELRDYGIP--VTLI---VDSAV 177 (301)
T ss_pred EEEEECCc------HHHHHHHHHHHHcC-----CcEEEEEecCCCcchH----HHHHHHHHHCCCC--EEEE---ehhHH
Confidence 56655543 24455555555554 5788887776665421 3344455566764 5555 34688
Q ss_pred HHHHHhCcEEEEcC--CCCcCCc--------cHHHHHHcCCcEEEe
Q psy15555 371 KKEFSEGLIGLHAM--WNEHFGI--------GIVECMAAGLIMIAH 406 (488)
Q Consensus 371 ~~~~~~ad~~v~~s--~~e~~g~--------~~lEa~a~G~PvI~~ 406 (488)
..+++.+|.++.+. ....+|. ..+=|-.+|+|+++-
T Consensus 178 ~~~m~~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv~V~ 223 (301)
T TIGR00511 178 RYFMKEVDHVVVGADAITANGALINKIGTSQLALAAREARVPFMVA 223 (301)
T ss_pred HHHHHhCCEEEECccEEecCCCEEEHHhHHHHHHHHHHhCCCEEEE
Confidence 88999999655554 2333332 235567789999973
No 328
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=39.78 E-value=2.3e+02 Score=23.87 Aligned_cols=114 Identities=12% Similarity=0.077 Sum_probs=59.2
Q ss_pred HhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHh
Q psy15555 238 VGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQI 317 (488)
Q Consensus 238 ~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~ 317 (488)
+++.+|.+++-+..+....... +.+-+-.+ ++.| .+...-.....+...+.++|. ..+.+-++...+.++
T Consensus 2 ~~~~adlv~~DG~~i~~~~~~~-g~~~~~rv--~g~d--l~~~l~~~~~~~~~~ifllG~-----~~~~~~~~~~~l~~~ 71 (172)
T PF03808_consen 2 ALNSADLVLPDGMPIVWAARLL-GRPLPERV--TGSD--LFPDLLRRAEQRGKRIFLLGG-----SEEVLEKAAANLRRR 71 (172)
T ss_pred hHHhCCEEecCCHHHHHHHHHc-CCCCCccc--CHHH--HHHHHHHHHHHcCCeEEEEeC-----CHHHHHHHHHHHHHH
Confidence 3567899999999888777765 43311111 2222 111111111122334455553 234556777788888
Q ss_pred hhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC-CChHHH
Q psy15555 318 ISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN-LPYEDM 370 (488)
Q Consensus 318 ~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-~~~~el 370 (488)
+ |++. |+|..+...+++..+++.+.+++.+ .++.++|- .|.+|.
T Consensus 72 y-----P~l~--ivg~~~g~f~~~~~~~i~~~I~~~~--pdiv~vglG~PkQE~ 116 (172)
T PF03808_consen 72 Y-----PGLR--IVGYHHGYFDEEEEEAIINRINASG--PDIVFVGLGAPKQER 116 (172)
T ss_pred C-----CCeE--EEEecCCCCChhhHHHHHHHHHHcC--CCEEEEECCCCHHHH
Confidence 7 6555 5554432223344466666666665 34555543 354443
No 329
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=39.17 E-value=1.3e+02 Score=28.48 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=26.9
Q ss_pred cEEEEeccCCCCCCCce--ehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHH
Q psy15555 53 KTVAFFHPYCNAGGGGE--RVLWTAVLALHQKYPDYKIYIYTGDVDASPSEII 103 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e--~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~ 103 (488)
+||.|+ .+.+ |.. +.+..++-.+++.| ..+++.++++-+.-...+
T Consensus 2 ~riv~f---~GKG-GVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f 48 (322)
T COG0003 2 TRIVFF---TGKG-GVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVF 48 (322)
T ss_pred cEEEEE---ecCC-cccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhh
Confidence 577775 3333 454 46666778888875 446777666555444333
No 330
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.08 E-value=1.5e+02 Score=27.58 Aligned_cols=52 Identities=10% Similarity=0.036 Sum_probs=34.0
Q ss_pred HhCcEEEEcCCCCcCCccHHHHH----HcCCcEEEeCCCCCccceeccCCCccccceecC-CHHHHHHHHHHHHc
Q psy15555 375 SEGLIGLHAMWNEHFGIGIVECM----AAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKLILH 444 (488)
Q Consensus 375 ~~ad~~v~~s~~e~~g~~~lEa~----a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~ 444 (488)
..+|+++.- |+--+++.++ ..++||+.-+.| .-|++.+ +++++.+++.++++
T Consensus 63 ~~~Dlvi~i----GGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFLt~~~~~~~~~~l~~i~~ 119 (287)
T PRK14077 63 KISDFLISL----GGDGTLISLCRKAAEYDKFVLGIHAG--------------HLGFLTDITVDEAEKFFQAFFQ 119 (287)
T ss_pred cCCCEEEEE----CCCHHHHHHHHHhcCCCCcEEEEeCC--------------CcccCCcCCHHHHHHHHHHHHc
Confidence 468854431 1123455433 348899887654 2378877 88999999999887
No 331
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=38.88 E-value=2.3e+02 Score=24.10 Aligned_cols=112 Identities=9% Similarity=-0.013 Sum_probs=53.2
Q ss_pred hcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhh
Q psy15555 239 GKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQII 318 (488)
Q Consensus 239 ~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~ 318 (488)
++.+|.+++-.....-..+..+. +. ..-+ ++.|. +...-.....+...+.++|. ..+.+-++.+.+.+++
T Consensus 3 ~~~ad~v~~DG~~iv~~~r~~g~-~~-~~Rv-~G~dl--~~~l~~~~~~~~~~vfllG~-----~~~v~~~~~~~l~~~y 72 (177)
T TIGR00696 3 INQAELVTPDGIGVVWGLKLLGY-PQ-QSRV-AGPDL--MEELCQRAGKEKLPIFLYGG-----KPDVLQQLKVKLIKEY 72 (177)
T ss_pred HHhCCEEecCcHHHHHHHHHcCC-CC-CCcc-ChHHH--HHHHHHHHHHcCCeEEEECC-----CHHHHHHHHHHHHHHC
Confidence 45678888888777555554432 21 1111 23332 21111111112233444453 2345567777788887
Q ss_pred hhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC-CChHHH
Q psy15555 319 SEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN-LPYEDM 370 (488)
Q Consensus 319 ~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-~~~~el 370 (488)
|++++.-. .++.. ++..+++.+.+.+.+ .++.++|- .|.+|.
T Consensus 73 -----P~l~i~g~-~g~f~--~~~~~~i~~~I~~s~--~dil~VglG~PkQE~ 115 (177)
T TIGR00696 73 -----PKLKIVGA-FGPLE--PEERKAALAKIARSG--AGIVFVGLGCPKQEI 115 (177)
T ss_pred -----CCCEEEEE-CCCCC--hHHHHHHHHHHHHcC--CCEEEEEcCCcHhHH
Confidence 77664432 23322 222245555565554 34555543 355554
No 332
>KOG1467|consensus
Probab=38.79 E-value=1.9e+02 Score=28.77 Aligned_cols=74 Identities=9% Similarity=0.046 Sum_probs=46.5
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCc-EEEEcCC--CCc-------CCccH
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGL-IGLHAMW--NEH-------FGIGI 393 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad-~~v~~s~--~e~-------~g~~~ 393 (488)
+++++++|-..|.-+. ..+.+...+.|++ +.|.-- .-+..++..++ +|++.+. ..| -....
T Consensus 384 k~frVvVVDSRP~~EG----~~~lr~Lv~~Gin--ctYv~I---~a~syim~evtkvfLGahailsNG~vysR~GTa~va 454 (556)
T KOG1467|consen 384 KKFRVVVVDSRPNLEG----RKLLRRLVDRGIN--CTYVLI---NAASYIMLEVTKVFLGAHAILSNGAVYSRVGTACVA 454 (556)
T ss_pred cceEEEEEeCCCCcch----HHHHHHHHHcCCC--eEEEEe---hhHHHHHHhcceeeechhhhhcCcchhhhcchHHHH
Confidence 7899999998886533 4445555566765 444332 34445566677 7777662 222 12345
Q ss_pred HHHHHcCCcEEEe
Q psy15555 394 VECMAAGLIMIAH 406 (488)
Q Consensus 394 lEa~a~G~PvI~~ 406 (488)
+=|-+..+|||+.
T Consensus 455 lvAna~nVPVlVC 467 (556)
T KOG1467|consen 455 LVANAFNVPVLVC 467 (556)
T ss_pred HHhcccCCCEEEE
Confidence 6777889999985
No 333
>PRK13529 malate dehydrogenase; Provisional
Probab=38.45 E-value=2e+02 Score=29.46 Aligned_cols=38 Identities=18% Similarity=0.020 Sum_probs=28.2
Q ss_pred HHHHHHHHhC--cEEEEcCC-CCcCCccHHHHHHc--CCcEEE
Q psy15555 368 EDMKKEFSEG--LIGLHAMW-NEHFGIGIVECMAA--GLIMIA 405 (488)
Q Consensus 368 ~el~~~~~~a--d~~v~~s~-~e~~g~~~lEa~a~--G~PvI~ 405 (488)
..+.+..+.+ |++|+.|. ...|.-.++++|+. ..|||.
T Consensus 372 ~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 414 (563)
T PRK13529 372 ISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIF 414 (563)
T ss_pred CCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 4678888888 89999886 34566677888875 567766
No 334
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=38.45 E-value=73 Score=27.36 Aligned_cols=103 Identities=12% Similarity=0.077 Sum_probs=50.9
Q ss_pred CeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChH
Q psy15555 289 PVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYE 368 (488)
Q Consensus 289 ~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 368 (488)
+.+++.+.+.+ +...+...++++++++ |+..+++....+.. .+..++.... ...+.+.+.=...
T Consensus 22 ~~iWiHa~SvG---E~~a~~~Li~~l~~~~-----p~~~illT~~T~tg-----~~~~~~~~~~---~v~~~~~P~D~~~ 85 (186)
T PF04413_consen 22 PLIWIHAASVG---EVNAARPLIKRLRKQR-----PDLRILLTTTTPTG-----REMARKLLPD---RVDVQYLPLDFPW 85 (186)
T ss_dssp T-EEEE-SSHH---HHHHHHHHHHHHTT--------TS-EEEEES-CCH-----HHHHHGG-GG---G-SEEE---SSHH
T ss_pred CcEEEEECCHH---HHHHHHHHHHHHHHhC-----CCCeEEEEecCCch-----HHHHHHhCCC---CeEEEEeCccCHH
Confidence 56777776653 4566677777777777 89999998876532 1223333221 2235554432335
Q ss_pred HHHHHHHhC--cEEEEcCCCCcCCccHHHHHHcCCcEEEeCC
Q psy15555 369 DMKKEFSEG--LIGLHAMWNEHFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 369 el~~~~~~a--d~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~ 408 (488)
.+..+++.- |++|. ...|-+++-+.++-..|+|++.-|.
T Consensus 86 ~~~rfl~~~~P~~~i~-~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 86 AVRRFLDHWRPDLLIW-VETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp HHHHHHHHH--SEEEE-ES----HHHHHH-----S-EEEEEE
T ss_pred HHHHHHHHhCCCEEEE-EccccCHHHHHHHhhcCCCEEEEee
Confidence 667777776 44443 4668899999999999999998654
No 335
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=38.40 E-value=1.5e+02 Score=24.51 Aligned_cols=77 Identities=14% Similarity=0.060 Sum_probs=41.5
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC-CChHHHHHHHHh-----CcEEEEcCCCCcCCccHHHHHHcCC
Q psy15555 328 LIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN-LPYEDMKKEFSE-----GLIGLHAMWNEHFGIGIVECMAAGL 401 (488)
Q Consensus 328 l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-~~~~el~~~~~~-----ad~~v~~s~~e~~g~~~lEa~a~G~ 401 (488)
.++.|+.. |....++..+.++++|++-.+...+- .+.+++.++.+. ++++|.....+ .++.-+=|...-+
T Consensus 4 ~Ii~gs~S---D~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~-a~Lpgvva~~t~~ 79 (150)
T PF00731_consen 4 AIIMGSTS---DLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMS-AALPGVVASLTTL 79 (150)
T ss_dssp EEEESSGG---GHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS---HHHHHHHHSSS
T ss_pred EEEeCCHH---HHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCc-ccchhhheeccCC
Confidence 34555553 33667777777777776655555542 244566666544 46666554332 2344455566688
Q ss_pred cEEEeCC
Q psy15555 402 IMIAHKS 408 (488)
Q Consensus 402 PvI~~~~ 408 (488)
|||.-+.
T Consensus 80 PVIgvP~ 86 (150)
T PF00731_consen 80 PVIGVPV 86 (150)
T ss_dssp -EEEEEE
T ss_pred CEEEeec
Confidence 8888554
No 336
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=38.08 E-value=3.5e+02 Score=25.48 Aligned_cols=96 Identities=6% Similarity=0.017 Sum_probs=57.3
Q ss_pred EEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHH
Q psy15555 291 KIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDM 370 (488)
Q Consensus 291 ~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el 370 (488)
+++..|+. ..++..+....++. .++++++.-..|..+. ..+.+.+.+.|++ ++++.. ..+
T Consensus 123 ~ILT~~~S------~tv~~~l~~A~~~~-----k~~~V~v~EsrP~~~G----~~~a~~L~~~GI~--vtlI~D---sav 182 (310)
T PRK08535 123 VIMTHCNS------SAALSVIKTAHEQG-----KDIEVIATETRPRNQG----HITAKELAEYGIP--VTLIVD---SAV 182 (310)
T ss_pred EEEEeCCc------HHHHHHHHHHHHCC-----CeEEEEEecCCchhhH----HHHHHHHHHCCCC--EEEEeh---hHH
Confidence 56665643 34555555555554 5778777766664321 3344555566764 555544 688
Q ss_pred HHHHHhCcEEEEcC--CCCcCCc--------cHHHHHHcCCcEEEe
Q psy15555 371 KKEFSEGLIGLHAM--WNEHFGI--------GIVECMAAGLIMIAH 406 (488)
Q Consensus 371 ~~~~~~ad~~v~~s--~~e~~g~--------~~lEa~a~G~PvI~~ 406 (488)
..++..+|.++.+. ....+|. ..+=|-.+|+|+++-
T Consensus 183 ~~~m~~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~ 228 (310)
T PRK08535 183 RYFMKDVDKVVVGADAITANGAVINKIGTSQIALAAHEARVPFMVA 228 (310)
T ss_pred HHHHHhCCEEEECccEEecCCCEEeHHhHHHHHHHHHHhCCCEEEe
Confidence 88999999665554 2233332 134566679999973
No 337
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.88 E-value=1.2e+02 Score=28.60 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=35.1
Q ss_pred HhCcEEEEcCCCCcCCccHHHHHH----cCCcEEEeCCCCCccceeccCCCccccceecC-CHHHHHHHHHHHHc
Q psy15555 375 SEGLIGLHAMWNEHFGIGIVECMA----AGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKLILH 444 (488)
Q Consensus 375 ~~ad~~v~~s~~e~~g~~~lEa~a----~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~ 444 (488)
+.+|+++.- |+--+++.|+. .++|++.-+.| .-|++.+ +++++.+++.++++
T Consensus 67 ~~~Dlvi~i----GGDGTlL~aar~~~~~~iPilGIN~G--------------~lGFLt~~~~~~~~~~l~~l~~ 123 (305)
T PRK02649 67 SSMKFAIVL----GGDGTVLSAARQLAPCGIPLLTINTG--------------HLGFLTEAYLNQLDEAIDQVLA 123 (305)
T ss_pred cCcCEEEEE----eCcHHHHHHHHHhcCCCCcEEEEeCC--------------CCcccccCCHHHHHHHHHHHHc
Confidence 468854432 11235555544 48899987754 2378877 88999999999987
No 338
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=37.75 E-value=3.2e+02 Score=24.99 Aligned_cols=92 Identities=9% Similarity=-0.005 Sum_probs=59.4
Q ss_pred CCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEE
Q psy15555 301 EKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIG 380 (488)
Q Consensus 301 ~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~ 380 (488)
..|++.+++.+++. .+.-+++++-|. +..+++.+.++++|+..-..+.+..+.+.+..+.+.++-|
T Consensus 105 ~~G~e~F~~~~~~a----------GvdgviipDLP~----ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gF 170 (263)
T CHL00200 105 HYGINKFIKKISQA----------GVKGLIIPDLPY----EESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGC 170 (263)
T ss_pred HhCHHHHHHHHHHc----------CCeEEEecCCCH----HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCc
Confidence 45777776666543 677788888875 3357888899999986433334445678899999999944
Q ss_pred EEc-CCCCcCCc------cHHHHH-----HcCCcEEEe
Q psy15555 381 LHA-MWNEHFGI------GIVECM-----AAGLIMIAH 406 (488)
Q Consensus 381 v~~-s~~e~~g~------~~lEa~-----a~G~PvI~~ 406 (488)
|+. |.....|. .+-|.. ..++|+.+.
T Consensus 171 IY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vG 208 (263)
T CHL00200 171 IYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILG 208 (263)
T ss_pred EEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEE
Confidence 443 43332232 233333 568888874
No 339
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=37.57 E-value=96 Score=22.19 Aligned_cols=50 Identities=10% Similarity=0.037 Sum_probs=32.1
Q ss_pred cEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCC
Q psy15555 358 NVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 358 ~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~ 408 (488)
.|.+...++..++.-.+..+. .+........+|..+-|-++|+|.|+.-.
T Consensus 12 ~IlV~~~~~p~~~~~~~~~~~-Giv~~~Gg~~SH~aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 12 VILVAEELTPSDLALDLQRVA-GIVTEEGGPTSHAAILARELGIPAIVGVG 61 (80)
T ss_dssp EEEEESS--TTCHHSHHTTSS-EEEESSSSTTSHHHHHHHHTT-EEEESTT
T ss_pred EEEEECCCCHHHHhcchhheE-EEEEEcCCccchHHHHHHHcCCCEEEeec
Confidence 467777776667762333444 44445556668999999999999998754
No 340
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=37.53 E-value=2.4e+02 Score=23.42 Aligned_cols=76 Identities=13% Similarity=0.051 Sum_probs=38.1
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC-CChHHHHHHHHh-----CcEEEEcCCCCcCCccHHHHHHcCCc
Q psy15555 329 IFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN-LPYEDMKKEFSE-----GLIGLHAMWNEHFGIGIVECMAAGLI 402 (488)
Q Consensus 329 ~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-~~~~el~~~~~~-----ad~~v~~s~~e~~g~~~lEa~a~G~P 402 (488)
+|.|+..+. +..++..+.++++|++..+...+- .+.+++.++.+. .+++|.....++ .+.-.=|...-+|
T Consensus 3 IimGS~SD~---~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa-~Lpgvva~~t~~P 78 (156)
T TIGR01162 3 IIMGSDSDL---PTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAA-HLPGMVAALTPLP 78 (156)
T ss_pred EEECcHhhH---HHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccc-hhHHHHHhccCCC
Confidence 444544322 555666666666666655555442 234555555542 455555432221 2333444555677
Q ss_pred EEEeCC
Q psy15555 403 MIAHKS 408 (488)
Q Consensus 403 vI~~~~ 408 (488)
||..+.
T Consensus 79 VIgvP~ 84 (156)
T TIGR01162 79 VIGVPV 84 (156)
T ss_pred EEEecC
Confidence 776554
No 341
>PRK06683 hypothetical protein; Provisional
Probab=37.48 E-value=1.6e+02 Score=21.34 Aligned_cols=45 Identities=7% Similarity=-0.009 Sum_probs=30.4
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHH
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS 375 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~ 375 (488)
.+++++|+...-+. ...+.+.++++..+++ +...+ +..||.....
T Consensus 26 gkaklViiA~Da~~---~~~~~i~~~~~~~~Vp--v~~~~--t~~eLG~A~G 70 (82)
T PRK06683 26 GIVKEVVIAEDADM---RLTHVIIRTALQHNIP--ITKVE--SVRKLGKVAG 70 (82)
T ss_pred CCeeEEEEECCCCH---HHHHHHHHHHHhcCCC--EEEEC--CHHHHHHHhC
Confidence 36788887765432 5668888889988876 55555 4478776543
No 342
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=37.40 E-value=2.4e+02 Score=29.94 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=18.6
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEE
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIY 89 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~ 89 (488)
|||+|+ |....+....++|.+.+ ++++
T Consensus 1 mkivf~--------g~~~~a~~~l~~L~~~~--~~i~ 27 (660)
T PRK08125 1 MKAVVF--------AYHDIGCVGIEALLAAG--YEIA 27 (660)
T ss_pred CeEEEE--------CCCHHHHHHHHHHHHCC--CcEE
Confidence 788886 45556677778888864 4444
No 343
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=37.32 E-value=92 Score=28.45 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=35.8
Q ss_pred CCcEEEecC-CCh---HHHHHHHHhCc-EEEEcCCCCcCC--ccHHHHHHcCCcEEEeCCCC
Q psy15555 356 ENNVEFKVN-LPY---EDMKKEFSEGL-IGLHAMWNEHFG--IGIVECMAAGLIMIAHKSGG 410 (488)
Q Consensus 356 ~~~v~~~g~-~~~---~el~~~~~~ad-~~v~~s~~e~~g--~~~lEa~a~G~PvI~~~~~~ 410 (488)
.++|++.|. +|. ++..+..+.|| ++|.++.....+ .-+-+|...|.|+|.-|...
T Consensus 180 rP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~~ 241 (260)
T cd01409 180 KPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGP 241 (260)
T ss_pred CCCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCCC
Confidence 467888776 454 34666778899 444454444433 23446888999999988753
No 344
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=37.20 E-value=1.6e+02 Score=24.48 Aligned_cols=92 Identities=10% Similarity=0.070 Sum_probs=56.8
Q ss_pred HHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCC-----hH----HHHHHHH
Q psy15555 305 PLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLP-----YE----DMKKEFS 375 (488)
Q Consensus 305 ~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~-----~~----el~~~~~ 375 (488)
..++.+.+++.+..+ ..+..+++|..+ +..+.+++.+..+|. +.|.....-. .+ -+.++++
T Consensus 18 ~e~l~~A~~La~~~g----~~v~av~~G~~~-----~~~~~l~~~l~~~G~-d~v~~~~~~~~~~~~~~~~a~~l~~~~~ 87 (164)
T PF01012_consen 18 LEALEAARRLAEALG----GEVTAVVLGPAE-----EAAEALRKALAKYGA-DKVYHIDDPALAEYDPEAYADALAELIK 87 (164)
T ss_dssp HHHHHHHHHHHHCTT----SEEEEEEEETCC-----CHHHHHHHHHHSTTE-SEEEEEE-GGGTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcC----CeEEEEEEecch-----hhHHHHhhhhhhcCC-cEEEEecCccccccCHHHHHHHHHHHHH
Confidence 456777777776532 367888888433 233667777777775 4555543211 11 3455566
Q ss_pred h--CcEEEEcCCCCcCCccHHHHHHcCCcEEEe
Q psy15555 376 E--GLIGLHAMWNEHFGIGIVECMAAGLIMIAH 406 (488)
Q Consensus 376 ~--ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~ 406 (488)
. .|+++.++...+..+...=|..+|.|+++.
T Consensus 88 ~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~ 120 (164)
T PF01012_consen 88 EEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTD 120 (164)
T ss_dssp HHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEE
T ss_pred hcCCCEEEEcCcCCCCcHHHHHHHHhCCCccce
Confidence 5 778888876666667777788889999874
No 345
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=36.96 E-value=3.2e+02 Score=25.62 Aligned_cols=88 Identities=6% Similarity=-0.117 Sum_probs=50.9
Q ss_pred HHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHH--hCcEEEEc
Q psy15555 306 LQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS--EGLIGLHA 383 (488)
Q Consensus 306 ~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~--~ad~~v~~ 383 (488)
.++..+....++. .++++++.-..|..+. .....+...+.|++ ++++. +.-+..+++ .+|.++.+
T Consensus 138 tv~~~l~~A~~~g-----~~~~V~v~EsrP~~~G---~~~~a~~L~~~gI~--vtlI~---Dsa~~~~m~~~~vd~VlvG 204 (303)
T TIGR00524 138 TALGVIRSAWEDG-----KRIRVIACETRPRNQG---SRLTAWELMQDGID--VTLIT---DSMAAYFMQKGEIDAVIVG 204 (303)
T ss_pred hHHHHHHHHHHcC-----CceEEEECCCCCccch---HHHHHHHHHHCCCC--EEEEC---hhHHHHHccccCCCEEEEc
Confidence 4445555555554 5677776655564321 12234444556764 55543 367888888 89955554
Q ss_pred C--CCCcCCc--------cHHHHHHcCCcEEEe
Q psy15555 384 M--WNEHFGI--------GIVECMAAGLIMIAH 406 (488)
Q Consensus 384 s--~~e~~g~--------~~lEa~a~G~PvI~~ 406 (488)
. ..+.+|. ..+=|-.+|+|+++-
T Consensus 205 Ad~v~~nG~v~nk~GT~~lA~~Ak~~~vPv~V~ 237 (303)
T TIGR00524 205 ADRIARNGDVANKIGTYQLAVLAKEFRIPFFVA 237 (303)
T ss_pred ccEEecCCCEeEhhhHHHHHHHHHHhCCCEEEe
Confidence 4 2333332 235677889999974
No 346
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=36.94 E-value=1.2e+02 Score=29.60 Aligned_cols=87 Identities=15% Similarity=0.099 Sum_probs=51.4
Q ss_pred HHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCC-CcEEEecCC--------C--hHHHHH---
Q psy15555 307 QLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLE-NNVEFKVNL--------P--YEDMKK--- 372 (488)
Q Consensus 307 ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~~--------~--~~el~~--- 372 (488)
++.|++...++. .+.++++.|.|... -.+.+++...|.. .+|...+.- + .++...
T Consensus 186 llnalk~~gk~l-----~d~kiv~~GAGAAg------iaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a 254 (432)
T COG0281 186 LLNALKLTGKKL-----KDQKIVINGAGAAG------IAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKA 254 (432)
T ss_pred HHHHHHHhCCCc-----cceEEEEeCCcHHH------HHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHH
Confidence 344444444444 67888888888422 4455566666653 244443211 1 122222
Q ss_pred -----------HHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEE
Q psy15555 373 -----------EFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIA 405 (488)
Q Consensus 373 -----------~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~ 405 (488)
.+..+|+|++.|....+---+++.|+.. |+|.
T Consensus 255 ~~~~~~~~~~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~-PiIf 297 (432)
T COG0281 255 IEDTGERTLDLALAGADVLIGVSGVGAFTEEMVKEMAKH-PIIF 297 (432)
T ss_pred HhhhccccccccccCCCEEEEcCCCCCcCHHHHHHhccC-CEEe
Confidence 3446899999997766666788888877 7776
No 347
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.57 E-value=1.1e+02 Score=28.53 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=28.3
Q ss_pred cHHHHHH----cCCcEEEeCCCCCccceeccCCCccccceecC-CHHHHHHHHHHHHc
Q psy15555 392 GIVECMA----AGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKLILH 444 (488)
Q Consensus 392 ~~lEa~a----~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~ 444 (488)
++++++. .++||+.-+.| .-|++.+ +++++.+++.++++
T Consensus 74 t~l~~~~~~~~~~~Pvlgin~G--------------~lGFl~~~~~~~~~~~l~~~~~ 117 (295)
T PRK01231 74 SLLGAARALARHNVPVLGINRG--------------RLGFLTDIRPDELEFKLAEVLD 117 (295)
T ss_pred HHHHHHHHhcCCCCCEEEEeCC--------------cccccccCCHHHHHHHHHHHHc
Confidence 4555443 47888877653 2477777 88999999999987
No 348
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=36.53 E-value=4e+02 Score=25.79 Aligned_cols=49 Identities=18% Similarity=0.460 Sum_probs=28.5
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHh-CCCeeEEEEeCCCCCChhHHHHH
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQK-YPDYKIYIYTGDVDASPSEIIKR 105 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~-~~~~~v~~~~~~~~~~~~~~~~~ 105 (488)
..|-++.|..+ ++..+.+.++.+.++ +|+.+|++...+.+....++.+.
T Consensus 41 p~VSViiP~~n----ee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~ 90 (373)
T TIGR03472 41 PPVSVLKPLHG----DEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRR 90 (373)
T ss_pred CCeEEEEECCC----CChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHH
Confidence 45666666543 555566666666554 67889888665544333344443
No 349
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=36.35 E-value=2.8e+02 Score=25.44 Aligned_cols=106 Identities=12% Similarity=0.155 Sum_probs=66.1
Q ss_pred cccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhh
Q psy15555 240 KYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIIS 319 (488)
Q Consensus 240 ~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~ 319 (488)
++.|.--.-++|..+++++- ...+.||+++.+.....-.. ++--.|+| .-||..-+++.+..|.+.+=
T Consensus 6 RRTDIPAfY~~Wf~nRl~~G------~v~vrNPfn~~qvsrv~l~p-~~Vd~iVF-----WTKnp~P~l~~L~~l~~~gy 73 (266)
T PF08902_consen 6 RRTDIPAFYSDWFMNRLREG------YVLVRNPFNPHQVSRVSLSP-EDVDCIVF-----WTKNPAPFLPYLDELDERGY 73 (266)
T ss_pred cCCCcccchHHHHHHHhhCC------EEEeECCCCCCceEEEEcCh-hcceEEEE-----ecCCcHHHHhhHHHHHhCCC
Confidence 45677777888888888862 46788998866655443211 11122333 24888889999998876420
Q ss_pred hhccCceEEEEEecCCCC-----CcHHHHHHHHHHHHhcCCCCcEEE
Q psy15555 320 EELWDNLKLIFIGSTRNE-----EDEVCVKDMQDLCKHLSLENNVEF 361 (488)
Q Consensus 320 ~~~~~~~~l~ivG~~~~~-----~~~~~~~~l~~~~~~~~l~~~v~~ 361 (488)
.-=+++.|.|-+.+- +-.+..+.++++.+..| +++|.+
T Consensus 74 ---~~yfq~Tit~Y~~~lEp~vP~~~~~i~~f~~Ls~~iG-~~rViW 116 (266)
T PF08902_consen 74 ---PYYFQFTITGYGKDLEPNVPPKDERIETFRELSERIG-PERVIW 116 (266)
T ss_pred ---ceEEEEEeCCCCccccCCCCCHHHHHHHHHHHHHHHC-CCcEEE
Confidence 023567777755221 12356778888888888 555554
No 350
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.25 E-value=2.1e+02 Score=26.73 Aligned_cols=52 Identities=12% Similarity=0.025 Sum_probs=35.6
Q ss_pred HhCcEEEEcCCCCcCCccHHHHHH----cCCcEEEeCCCCCccceeccCCCccccceecC-CHHHHHHHHHHHHc
Q psy15555 375 SEGLIGLHAMWNEHFGIGIVECMA----AGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKLILH 444 (488)
Q Consensus 375 ~~ad~~v~~s~~e~~g~~~lEa~a----~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~ 444 (488)
..+|+++.- |+--+++.|+. .++|++.-+.| .-|++.+ +++++.+++.++++
T Consensus 67 ~~~D~vi~l----GGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL~~~~~~~~~~~l~~i~~ 123 (296)
T PRK04539 67 QYCDLVAVL----GGDGTFLSVAREIAPRAVPIIGINQG--------------HLGFLTQIPREYMTDKLLPVLE 123 (296)
T ss_pred cCCCEEEEE----CCcHHHHHHHHHhcccCCCEEEEecC--------------CCeEeeccCHHHHHHHHHHHHc
Confidence 358855432 22236665543 47899987754 2388887 88999999999987
No 351
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=35.72 E-value=1.8e+02 Score=21.59 Aligned_cols=93 Identities=11% Similarity=0.139 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCc--EEEEcC-CCCcCCccHHHHHH---cCCcEEE-eCCCCC--
Q psy15555 341 VCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGL--IGLHAM-WNEHFGIGIVECMA---AGLIMIA-HKSGGP-- 411 (488)
Q Consensus 341 ~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad--~~v~~s-~~e~~g~~~lEa~a---~G~PvI~-~~~~~~-- 411 (488)
...+.+++..+..|+. .+.... +.++....+.... +++... ....-|..+++.+. .++|+|. ++....
T Consensus 9 ~~~~~l~~~l~~~~~~-~v~~~~--~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~ 85 (112)
T PF00072_consen 9 EIRELLEKLLERAGYE-EVTTAS--SGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDDSDE 85 (112)
T ss_dssp HHHHHHHHHHHHTTEE-EEEEES--SHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTSHHH
T ss_pred HHHHHHHHHHHhCCCC-EEEEEC--CHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCCCCHHH
Confidence 5556677777655531 233333 3367777776655 444433 23333444444443 3778776 333221
Q ss_pred ccceeccCCCccccceecC--CHHHHHHHHH
Q psy15555 412 KMDIVIEDPETCRNGFLAC--DEVEYAQTIK 440 (488)
Q Consensus 412 ~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~ 440 (488)
..+..+.+ ..+++.. +.+++.++++
T Consensus 86 ~~~~~~~g----~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 86 VQEALRAG----ADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp HHHHHHTT----ESEEEESSSSHHHHHHHHH
T ss_pred HHHHHHCC----CCEEEECCCCHHHHHHhhC
Confidence 12344444 6677765 8888888764
No 352
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.41 E-value=2.1e+02 Score=26.73 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=35.1
Q ss_pred HhCcEEEEcCCCCcCCccHHHHHH----cCCcEEEeCCCCCccceeccCCCccccceecC-CHHHHHHHHHHHHc
Q psy15555 375 SEGLIGLHAMWNEHFGIGIVECMA----AGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKLILH 444 (488)
Q Consensus 375 ~~ad~~v~~s~~e~~g~~~lEa~a----~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~ 444 (488)
..+|+++.- |+--+++.|+. .++||+.-+.|. -|++.+ +++++.+++.++++
T Consensus 63 ~~~dlvi~l----GGDGT~L~aa~~~~~~~~PilGIN~G~--------------lGFLt~~~~~~~~~~l~~i~~ 119 (292)
T PRK01911 63 GSADMVISI----GGDGTFLRTATYVGNSNIPILGINTGR--------------LGFLATVSKEEIEETIDELLN 119 (292)
T ss_pred cCCCEEEEE----CCcHHHHHHHHHhcCCCCCEEEEecCC--------------CCcccccCHHHHHHHHHHHHc
Confidence 457854432 12235555444 478999877642 378877 89999999999987
No 353
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=35.39 E-value=4.6e+02 Score=26.02 Aligned_cols=159 Identities=11% Similarity=0.145 Sum_probs=79.9
Q ss_pred hHHHHHHHHHhHHhhhhhccCceEEEEEe-cCCCCCcHHHHHHHHHHHHhcCCCCcEEE-ecCCChHH---HHHHHHhC-
Q psy15555 304 HPLQLRAMYQLRQIISEELWDNLKLIFIG-STRNEEDEVCVKDMQDLCKHLSLENNVEF-KVNLPYED---MKKEFSEG- 377 (488)
Q Consensus 304 ~~~ll~a~~~l~~~~~~~~~~~~~l~ivG-~~~~~~~~~~~~~l~~~~~~~~l~~~v~~-~g~~~~~e---l~~~~~~a- 377 (488)
++..-+++...++.+ -| ++|+- .|+...+++.++++++..+... |+.+.+ ++.+..++ ....+..+
T Consensus 168 v~Iak~al~~ak~~~-----~D--vvIvDTAGRl~ide~Lm~El~~Ik~~~~-P~E~llVvDam~GQdA~~~A~aF~e~l 239 (451)
T COG0541 168 VEIAKAALEKAKEEG-----YD--VVIVDTAGRLHIDEELMDELKEIKEVIN-PDETLLVVDAMIGQDAVNTAKAFNEAL 239 (451)
T ss_pred HHHHHHHHHHHHHcC-----CC--EEEEeCCCcccccHHHHHHHHHHHhhcC-CCeEEEEEecccchHHHHHHHHHhhhc
Confidence 334455666665543 12 23321 2233345567777777766665 334433 33333322 22233222
Q ss_pred cE-EEEcCCCC---cCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceec--CCHHHHHHHHHHHHccCHHHHH
Q psy15555 378 LI-GLHAMWNE---HFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLA--CDEVEYAQTIKLILHLSQDTKT 451 (488)
Q Consensus 378 d~-~v~~s~~e---~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~--~~~~~l~~~i~~ll~~~~~~~~ 451 (488)
++ .|.-+..+ -+|-.+-=-...|+|+-.-..|.-. +-++....+--..-+. .|..+|.+.+++..+ .+..+
T Consensus 240 ~itGvIlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki-~dLE~F~P~R~asRILGMGDv~sLvEk~~~~~d--~e~a~ 316 (451)
T COG0541 240 GITGVILTKLDGDARGGAALSARAITGKPIKFIGTGEKI-DDLEPFHPDRFASRILGMGDVLSLIEKAEEVVD--EEEAE 316 (451)
T ss_pred CCceEEEEcccCCCcchHHHhhHHHHCCCeEEEecCCCc-ccCCCcChHHHHHHhcCcccHHHHHHHHHHhhh--HHHHH
Confidence 21 22222222 2455555566789999887665432 2222220000111122 288888888888774 34444
Q ss_pred HHHHHHHHHH-hhcCHHHHHHHHHHH
Q psy15555 452 RISQNAVSSV-DRFSMEEFKNGFLTF 476 (488)
Q Consensus 452 ~~~~~a~~~~-~~~s~~~~~~~~~~~ 476 (488)
++.+ +.. .+|+.+.+.+++.++
T Consensus 317 ~~~~---kl~~g~FtL~Df~~Ql~~m 339 (451)
T COG0541 317 KLAE---KLKKGKFTLEDFLEQLEQM 339 (451)
T ss_pred HHHH---HHHhCCCCHHHHHHHHHHH
Confidence 4433 333 679999999888765
No 354
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=35.33 E-value=2.2e+02 Score=26.60 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=34.1
Q ss_pred hCcEEEEcCCCCcCCccHHHHHH----cCCcEEEeCCCCCccceeccCCCccccceecC-CHHHHHHHHHHHHc
Q psy15555 376 EGLIGLHAMWNEHFGIGIVECMA----AGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKLILH 444 (488)
Q Consensus 376 ~ad~~v~~s~~e~~g~~~lEa~a----~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~ 444 (488)
.+|+++.- |+--+++++.. .++|++.-+.| .-|++.+ +++++.++|.++++
T Consensus 63 ~~d~vi~~----GGDGt~l~~~~~~~~~~~pilGIn~G--------------~lGFL~~~~~~~~~~~l~~~~~ 118 (291)
T PRK02155 63 RADLAVVL----GGDGTMLGIGRQLAPYGVPLIGINHG--------------RLGFITDIPLDDMQETLPPMLA 118 (291)
T ss_pred CCCEEEEE----CCcHHHHHHHHHhcCCCCCEEEEcCC--------------CccccccCCHHHHHHHHHHHHc
Confidence 57855432 12235555543 57898876643 3478887 88999999999987
No 355
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=35.24 E-value=85 Score=25.74 Aligned_cols=75 Identities=16% Similarity=0.041 Sum_probs=42.6
Q ss_pred ChHHHHHHHHhCcE-EEEcCCCCcCCc-cHHHHHHcCCcEEEe-CCCCCccceeccCCCccccceecCCHHHHHHHHH
Q psy15555 366 PYEDMKKEFSEGLI-GLHAMWNEHFGI-GIVECMAAGLIMIAH-KSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIK 440 (488)
Q Consensus 366 ~~~el~~~~~~ad~-~v~~s~~e~~g~-~~lEa~a~G~PvI~~-~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~ 440 (488)
+..+...++..||+ ++.+|..-+..+ .+++....+.+++.. +......+.+.+.+.+.-.|..+.|++.+.+++.
T Consensus 52 ~~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~~~~~~vil~GpS~~~~P~~l~~~Gv~~v~g~~v~d~~~~~~~i~ 129 (147)
T PF04016_consen 52 PDEDAEEILPWADVVIITGSTLVNGTIDDILELARNAREVILYGPSAPLHPEALFDYGVTYVGGSRVVDPEKVLRAIS 129 (147)
T ss_dssp EGGGHHHHGGG-SEEEEECHHCCTTTHHHHHHHTTTSSEEEEESCCGGS-GGGGCCTT-SEEEEEEES-HHHHHHHHC
T ss_pred CHHHHHHHHccCCEEEEEeeeeecCCHHHHHHhCccCCeEEEEecCchhhHHHHHhCCCCEEEEEEEeCHHHHHHHHH
Confidence 55789999999994 555553333333 466766657777764 3333333444443244445666778888877664
No 356
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=35.15 E-value=2.7e+02 Score=24.85 Aligned_cols=51 Identities=2% Similarity=-0.195 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCC--CCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcC-CccH
Q psy15555 343 VKDMQDLCKHLSL--ENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHF-GIGI 393 (488)
Q Consensus 343 ~~~l~~~~~~~~l--~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~-g~~~ 393 (488)
..+.-+.+++.|. ...+.+-+..|-+.+..++...|.++.-|-.+|| |...
T Consensus 105 ~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~PGfgGQ~f 158 (228)
T PRK08091 105 LALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRTGTKAP 158 (228)
T ss_pred HHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECCCCCCccc
Confidence 3567778888887 7788888888999999999999944443444444 4443
No 357
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=34.91 E-value=1.2e+02 Score=28.97 Aligned_cols=75 Identities=8% Similarity=-0.004 Sum_probs=51.2
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEe
Q psy15555 328 LIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAH 406 (488)
Q Consensus 328 l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~ 406 (488)
-+|+|.-......+-.+++.+..+++|.+......+.++.+++..+ ...|+++.++... +++=+.-..++|++++
T Consensus 241 giiv~tk~gQ~r~~~~~~l~k~~~~~g~~~~li~~~~i~p~~L~~f-~~iD~~v~taCPR---i~iDd~~~f~kPlLTP 315 (347)
T COG1736 241 GIIVSTKGGQRRLEVARELVKLLKEAGKEVYLIVVDEISPDKLANF-DDIDAFVNTACPR---IPIDDGDRFKKPLLTP 315 (347)
T ss_pred EEEEecccccCcHHHHHHHHHHHHHcCCceEEEEecCCCHHHHhcc-cceeEEEEecCCC---cccchHhhhCCcccCh
Confidence 3556654444445677888888999987766677788877766554 4788888765433 4566777778888764
No 358
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=34.89 E-value=3.3e+02 Score=24.26 Aligned_cols=16 Identities=6% Similarity=0.088 Sum_probs=9.3
Q ss_pred HHHHHHcCCcEEEeCC
Q psy15555 393 IVECMAAGLIMIAHKS 408 (488)
Q Consensus 393 ~lEa~a~G~PvI~~~~ 408 (488)
..++...|+|+|+.+.
T Consensus 72 ~~~~~~~~ipvv~~~~ 87 (264)
T cd01574 72 ALAAAPADVPVVFVDG 87 (264)
T ss_pred HHHHHhcCCCEEEEec
Confidence 4455556666666554
No 359
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=34.85 E-value=1.8e+02 Score=21.15 Aligned_cols=59 Identities=8% Similarity=0.123 Sum_probs=32.9
Q ss_pred CeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCC
Q psy15555 289 PVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLE 356 (488)
Q Consensus 289 ~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~ 356 (488)
+++++++....-. .....+..+.++.+++++ ..++.++.+....+ .++.++..++.+.+
T Consensus 2 K~~ll~fwa~~c~-~c~~~~~~l~~l~~~~~~--~~~v~~v~Vs~d~~------~~~~~~~~~~~~~~ 60 (95)
T PF13905_consen 2 KPVLLYFWASWCP-PCKKELPKLKELYKKYKK--KDDVEFVFVSLDED------EEEWKKFLKKNNFP 60 (95)
T ss_dssp SEEEEEEE-TTSH-HHHHHHHHHHHHHHHHTT--TTTEEEEEEE-SSS------HHHHHHHHHTCTTS
T ss_pred CEEEEEEECCCCH-HHHHHHHHHHHHHHHhCC--CCCEEEEEEEeCCC------HHHHHHHHHhcCCC
Confidence 4566665554322 234455566666666510 13888888887532 26778888777543
No 360
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=34.71 E-value=2.4e+02 Score=22.69 Aligned_cols=99 Identities=10% Similarity=0.027 Sum_probs=52.3
Q ss_pred eEEEcCCCCch--hhhccCCCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHH
Q psy15555 266 TYKLYPPCDTE--DLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCV 343 (488)
Q Consensus 266 ~~vi~~~~d~~--~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~ 343 (488)
+.|++-|.+.. .+-.... +.+..++.+|.+.. .....+-+....++++. ..-..+++|+.+.-. ++..
T Consensus 30 feVi~LG~~v~~e~~v~aa~---~~~adiVglS~l~~-~~~~~~~~~~~~l~~~g-----l~~~~vivGG~~vi~-~~d~ 99 (134)
T TIGR01501 30 FNVVNLGVLSPQEEFIKAAI---ETKADAILVSSLYG-HGEIDCKGLRQKCDEAG-----LEGILLYVGGNLVVG-KQDF 99 (134)
T ss_pred CEEEECCCCCCHHHHHHHHH---HcCCCEEEEecccc-cCHHHHHHHHHHHHHCC-----CCCCEEEecCCcCcC-hhhh
Confidence 56777776543 3322211 23444555555443 23334455555565554 222346777753110 1333
Q ss_pred HHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh
Q psy15555 344 KDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE 376 (488)
Q Consensus 344 ~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ 376 (488)
++.++.++++|+. -.|-+..+.+++..++..
T Consensus 100 ~~~~~~l~~~Gv~--~vF~pgt~~~~iv~~l~~ 130 (134)
T TIGR01501 100 PDVEKRFKEMGFD--RVFAPGTPPEVVIADLKK 130 (134)
T ss_pred HHHHHHHHHcCCC--EEECcCCCHHHHHHHHHH
Confidence 5566777888863 446655577888877654
No 361
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=34.40 E-value=1.5e+02 Score=26.82 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=13.5
Q ss_pred HHHHhhhcCCcEEEecCCcc
Q psy15555 151 GVEALLSFQPDIYIDTMGYA 170 (488)
Q Consensus 151 ~~~~l~~~~pDiii~~~~~~ 170 (488)
+.+.+...+||++....+.|
T Consensus 153 i~~~I~~s~pdil~VgmG~P 172 (253)
T COG1922 153 IVERIAASGPDILLVGMGVP 172 (253)
T ss_pred HHHHHHhcCCCEEEEeCCCc
Confidence 34566778899887665555
No 362
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=33.87 E-value=3.7e+02 Score=26.96 Aligned_cols=112 Identities=13% Similarity=0.082 Sum_probs=67.1
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhC--cEEEEcCC-CCcCCccHHHHHHc---C
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEG--LIGLHAMW-NEHFGIGIVECMAA---G 400 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~a--d~~v~~s~-~e~~g~~~lEa~a~---G 400 (488)
.+.+|-+.+ .....+.+.....|. .|...... .+....+... |+++.-.+ .+.-|+.+++.+.. +
T Consensus 6 ~iLvVDDd~-----~ir~~l~~~L~~~G~--~v~~a~~~--~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~ 76 (464)
T COG2204 6 RILVVDDDP-----DIRELLEQALELAGY--EVVTAESA--EEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPD 76 (464)
T ss_pred CEEEEeCCH-----HHHHHHHHHHHHcCC--eEEEeCCH--HHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCC
Confidence 355665443 555667777777774 35555554 6777777766 45554443 34556777776655 7
Q ss_pred CcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHHHHccCHHH
Q psy15555 401 LIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILHLSQDT 449 (488)
Q Consensus 401 ~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~~~~~~ 449 (488)
.|||.-...|..+..++.- ..+...|+.. |++.+...+.+.+. ....
T Consensus 77 ~pVI~~Tg~g~i~~AV~A~-k~GA~Dfl~KP~~~~~L~~~v~ral~-~~~~ 125 (464)
T COG2204 77 LPVIVMTGHGDIDTAVEAL-RLGAFDFLEKPFDLDRLLAIVERALE-LREL 125 (464)
T ss_pred CCEEEEeCCCCHHHHHHHH-hcCcceeeeCCCCHHHHHHHHHHHHH-Hhhh
Confidence 9999844433322333332 1113445544 99999999999997 4433
No 363
>PHA00451 protein kinase
Probab=33.85 E-value=1.6e+02 Score=26.85 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=25.5
Q ss_pred cCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHHc
Q psy15555 399 AGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILH 444 (488)
Q Consensus 399 ~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~ 444 (488)
.|+|+|+-++.... +- +. +.|+-+ ||++|...++.+..
T Consensus 205 ~g~p~ITDPVSFS~-dr--~r----e~GF~l-dPd~LiaEvEaia~ 242 (362)
T PHA00451 205 DGVPYITDPVSFSH-DR--ER----EPGFPL-DPDELIAEVEAIAN 242 (362)
T ss_pred CCCeEecCCccccC-cc--cc----CCCCCC-CHHHHHHHHHHHHH
Confidence 49999998875443 22 22 447333 89999888887765
No 364
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=33.79 E-value=2.7e+02 Score=26.43 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=25.1
Q ss_pred CCCCCC-CceehHHHHHHHHHHhCCCeeEEEEeCCCCC
Q psy15555 61 YCNAGG-GGERVLWTAVLALHQKYPDYKIYIYTGDVDA 97 (488)
Q Consensus 61 ~~~~~g-G~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~ 97 (488)
++..+| |=.-++..++++|+++ ++.+-+++...++
T Consensus 54 NltvGGtGKTP~vi~la~~l~~r--G~~~gvvSRGYgg 89 (336)
T COG1663 54 NLTVGGTGKTPVVIWLAEALQAR--GVRVGVVSRGYGG 89 (336)
T ss_pred cEEECCCCcCHHHHHHHHHHHhc--CCeeEEEecCcCC
Confidence 444444 4556788899999999 7888888776554
No 365
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=33.75 E-value=1.3e+02 Score=26.95 Aligned_cols=51 Identities=12% Similarity=0.036 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcC-CccHH
Q psy15555 344 KDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHF-GIGIV 394 (488)
Q Consensus 344 ~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~-g~~~l 394 (488)
..+-+.++++|....+.+.+..|-+.+..++...|.++.-|-..|| |...+
T Consensus 98 ~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi 149 (229)
T PRK09722 98 FRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPFI 149 (229)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhcc
Confidence 5667888888988888998888999999999999944443434444 44443
No 366
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=33.43 E-value=4.5e+02 Score=25.70 Aligned_cols=22 Identities=5% Similarity=-0.090 Sum_probs=15.8
Q ss_pred ccHHHHHHcCCcEEEeCCCCCc
Q psy15555 391 IGIVECMAAGLIMIAHKSGGPK 412 (488)
Q Consensus 391 ~~~lEa~a~G~PvI~~~~~~~~ 412 (488)
.++--...+|+||||.|.....
T Consensus 87 ~~irNla~~GI~vicYNFMPv~ 108 (394)
T TIGR00695 87 QTLRNLAQCGIKTVCYNFMPVL 108 (394)
T ss_pred HHHHHHHHcCCCEEEEEecccc
Confidence 3455567899999998885443
No 367
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=33.41 E-value=3.8e+02 Score=24.49 Aligned_cols=59 Identities=10% Similarity=-0.094 Sum_probs=30.2
Q ss_pred EEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCC-----CcHHHHHHHHHHHHhcC
Q psy15555 291 KIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNE-----EDEVCVKDMQDLCKHLS 354 (488)
Q Consensus 291 ~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~-----~~~~~~~~l~~~~~~~~ 354 (488)
.-+|+|.-...+.+..+-++...-.+-+ -.+.+...++++.- .+.+.......+..++|
T Consensus 116 ~~Vy~Gse~e~~~i~~~~~v~~~a~~~G-----mp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelG 179 (265)
T COG1830 116 ATVYVGSETEREMIENISQVVEDAHELG-----MPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELG 179 (265)
T ss_pred EEEecCCcchHHHHHHHHHHHHHHHHcC-----CceEEEEeccCCcccccccccHHHHHHHHHHHHHhc
Confidence 4456665444445555555555444433 35556678888644 22233344444555555
No 368
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=33.32 E-value=3.9e+02 Score=24.65 Aligned_cols=96 Identities=15% Similarity=0.135 Sum_probs=59.3
Q ss_pred EEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHH
Q psy15555 291 KIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDM 370 (488)
Q Consensus 291 ~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el 370 (488)
+++..|+. ..++..+....+++ .++++++.-..|..+. ..+.+.+.+.|++ ++++.. .-+
T Consensus 112 ~ILTh~~S------~tv~~~l~~A~~~g-----k~~~V~v~EsrP~~qG----~~la~eL~~~GI~--vtlI~D---sa~ 171 (275)
T PRK08335 112 VIITHSFS------SAVLEILKTAKRKG-----KRFKVILTESAPDYEG----LALANELEFLGIE--FEVITD---AQL 171 (275)
T ss_pred EEEEECCc------HHHHHHHHHHHHcC-----CceEEEEecCCCchhH----HHHHHHHHHCCCC--EEEEec---cHH
Confidence 45555543 25667777776665 5788877776664321 3445555666765 555544 567
Q ss_pred HHHHHhCcEEEEcC--CCCcCCc--------cHHHHHHcCCcEEEe
Q psy15555 371 KKEFSEGLIGLHAM--WNEHFGI--------GIVECMAAGLIMIAH 406 (488)
Q Consensus 371 ~~~~~~ad~~v~~s--~~e~~g~--------~~lEa~a~G~PvI~~ 406 (488)
..+++.+|.++.+. ....++. ..+=|-..|+|+++-
T Consensus 172 ~~~m~~vd~VivGAD~I~~nG~v~NKiGT~~lA~~Ak~~~vPfyV~ 217 (275)
T PRK08335 172 GLFAKEATLALVGADNVTRDGYVVNKAGTYLLALACHDNGVPFYVA 217 (275)
T ss_pred HHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEE
Confidence 77899999666554 2233321 235677789999974
No 369
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=33.12 E-value=2.6e+02 Score=24.75 Aligned_cols=62 Identities=10% Similarity=0.046 Sum_probs=33.9
Q ss_pred HHHHHHHHhCcEEEEcCCCCcCC-ccHHHHHHcCCcEEEeCCC-------CCccceeccCCCccccceecCCHHHHHH
Q psy15555 368 EDMKKEFSEGLIGLHAMWNEHFG-IGIVECMAAGLIMIAHKSG-------GPKMDIVIEDPETCRNGFLACDEVEYAQ 437 (488)
Q Consensus 368 ~el~~~~~~ad~~v~~s~~e~~g-~~~lEa~a~G~PvI~~~~~-------~~~~eiv~~~~~~~~~g~~~~~~~~l~~ 437 (488)
+.+...++.+ ++|.-+...++. ++.-+|+..|+||.+.+.. |.. .+++++ +..+.+.+++.+
T Consensus 149 Nriia~ls~~-vivve~~~~sGtl~ta~~A~~~gr~v~~~pg~~~~~~~~G~~-~Li~~G------A~~i~~~~d~~~ 218 (220)
T TIGR00732 149 NRIISGLSRA-VLVVEAPLKSGALITARYALEQGREVFAYPGDLNSPESDGCH-KLIEQG------AALITSAKDILE 218 (220)
T ss_pred HHHHHHhcCE-EEEEECCCCCchHHHHHHHHHhCCcEEEEcCCCCCccchHHH-HHHHCC------CEEECCHHHHHH
Confidence 3444444333 333333333333 4567889999999997532 222 455554 345557777654
No 370
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=32.90 E-value=2.6e+02 Score=22.42 Aligned_cols=96 Identities=7% Similarity=-0.082 Sum_probs=43.7
Q ss_pred ceEEEcCCCCchhhhccCCCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHH
Q psy15555 265 KTYKLYPPCDTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVK 344 (488)
Q Consensus 265 k~~vi~~~~d~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~ 344 (488)
-+.|+..+.+.+.-.-.......+..+++..+..+.. .+.+-+..+.|+++.. +++. +++|+.+..
T Consensus 30 GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~--~~~~~~~~~~L~~~g~----~~i~-vivGG~~~~------- 95 (132)
T TIGR00640 30 GFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGH--LTLVPALRKELDKLGR----PDIL-VVVGGVIPP------- 95 (132)
T ss_pred CcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhh--HHHHHHHHHHHHhcCC----CCCE-EEEeCCCCh-------
Confidence 4788888876432221111111222233333333222 2234445555555431 2444 556654322
Q ss_pred HHHHHHHhcCCCCcEEEecCCChHHHHHHHHh
Q psy15555 345 DMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE 376 (488)
Q Consensus 345 ~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ 376 (488)
+-.+..+++|+. .+...|. +..++.+.+..
T Consensus 96 ~~~~~l~~~Gvd-~~~~~gt-~~~~i~~~l~~ 125 (132)
T TIGR00640 96 QDFDELKEMGVA-EIFGPGT-PIPESAIFLLK 125 (132)
T ss_pred HhHHHHHHCCCC-EEECCCC-CHHHHHHHHHH
Confidence 223346677873 4444444 55666665543
No 371
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=32.84 E-value=1.9e+02 Score=26.20 Aligned_cols=104 Identities=14% Similarity=0.102 Sum_probs=55.6
Q ss_pred HHHHHHHhCcEEEEc-CCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC-CHHHHHHHHHHHHc-c
Q psy15555 369 DMKKEFSEGLIGLHA-MWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKLILH-L 445 (488)
Q Consensus 369 el~~~~~~ad~~v~~-s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~-~ 445 (488)
.-.+-++.||++|.. ...|++--.+++........+..-..+...+--.+. ..-|+-+ +...+++.|.+.+. .
T Consensus 40 ~d~~~l~~Adlvv~~G~~~e~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~n----pH~Wldp~~~~~~~~~Ia~~L~~~ 115 (256)
T PF01297_consen 40 SDIKKLQKADLVVYNGLGLEPWLEKLLESSQNPKVKVIDLSEGIDLDHHGHN----PHVWLDPENAKKMAEAIADALSEL 115 (256)
T ss_dssp HHHHHHHHSSEEEES-TTTSCCHHHHHHTTTTTTTEEEETTTTS-GSTTCBE----STGGGSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEeCCccchhhhhhhhcccccccceEEeecccccccCCCC----CchHHHHHHHHHHHHHHHHHHHHh
Confidence 444556889977664 356766445554444444444433333311001111 2344433 66666666666543 4
Q ss_pred CHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy15555 446 SQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 446 ~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~ 478 (488)
+|+......+|+.++.++ .+...+++.+.+.
T Consensus 116 ~P~~~~~y~~N~~~~~~~--L~~l~~~~~~~~~ 146 (256)
T PF01297_consen 116 DPANKDYYEKNAEKYLKE--LDELDAEIKEKLA 146 (256)
T ss_dssp TGGGHHHHHHHHHHHHHH--HHHHHHHHHHHHT
T ss_pred CccchHHHHHHHHHHHHH--HHHHHHHHHHHhh
Confidence 788888888888766654 4444455544444
No 372
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=32.22 E-value=4.6e+02 Score=25.07 Aligned_cols=102 Identities=10% Similarity=-0.064 Sum_probs=58.9
Q ss_pred cCCCCChHHHHHHHHHhHHhhhhhccCceEEEEE----ecCC----CCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHH
Q psy15555 298 FRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFI----GSTR----NEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYED 369 (488)
Q Consensus 298 ~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~iv----G~~~----~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~e 369 (488)
...-+..+.+++..+.+++.. - ++... ++.. ....++-.+.+.+.+++.|++--.... +..+
T Consensus 100 PCsiEs~e~~~~~A~~lk~~g-----a--~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v~tev~---d~~~ 169 (335)
T PRK08673 100 PCSVESEEQILEIARAVKEAG-----A--QILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREETGLPIVTEVM---DPRD 169 (335)
T ss_pred cCccCCHHHHHHHHHHHHHhc-----h--hhccCcEecCCCCCcccccccHHHHHHHHHHHHHcCCcEEEeeC---CHHH
Confidence 344456778888888887654 1 22211 1110 111235557788888899986322222 3355
Q ss_pred HHHHHHhCcEEEEcCC-CCcCCccHHHHHHcCCcEEEeCCCC
Q psy15555 370 MKKEFSEGLIGLHAMW-NEHFGIGIVECMAAGLIMIAHKSGG 410 (488)
Q Consensus 370 l~~~~~~ad~~v~~s~-~e~~g~~~lEa~a~G~PvI~~~~~~ 410 (488)
+..+...+|++-.+|. ...+. -+-++...|+||+.+....
T Consensus 170 ~~~l~~~vd~lqIgAr~~~N~~-LL~~va~~~kPViLk~G~~ 210 (335)
T PRK08673 170 VELVAEYVDILQIGARNMQNFD-LLKEVGKTNKPVLLKRGMS 210 (335)
T ss_pred HHHHHHhCCeEEECcccccCHH-HHHHHHcCCCcEEEeCCCC
Confidence 6556666898777774 23222 2445667799999987633
No 373
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=32.09 E-value=4e+02 Score=24.39 Aligned_cols=123 Identities=11% Similarity=0.067 Sum_probs=72.9
Q ss_pred CCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEec---CCChHHHHHHHHh
Q psy15555 300 PEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKV---NLPYEDMKKEFSE 376 (488)
Q Consensus 300 ~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g---~~~~~el~~~~~~ 376 (488)
+.+.++.+.++++..++.+ -.+.+-+.-.. ..+.++..++.+.+.+.|. +.+.+.+ ....+++.++++.
T Consensus 104 ~~~~~~~~~~~i~~ak~~G-----~~v~~~~~~a~--~~~~~~~~~~~~~~~~~g~-~~i~l~DT~G~~~P~~v~~lv~~ 175 (266)
T cd07944 104 HKHEFDEALPLIKAIKEKG-----YEVFFNLMAIS--GYSDEELLELLELVNEIKP-DVFYIVDSFGSMYPEDIKRIISL 175 (266)
T ss_pred ccccHHHHHHHHHHHHHCC-----CeEEEEEEeec--CCCHHHHHHHHHHHHhCCC-CEEEEecCCCCCCHHHHHHHHHH
Confidence 3456788888888887654 33333332222 2334666777777777773 5666654 4455666665555
Q ss_pred Cc------EEEEcCCCCcCCc---cHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHH
Q psy15555 377 GL------IGLHAMWNEHFGI---GIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLI 442 (488)
Q Consensus 377 ad------~~v~~s~~e~~g~---~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~l 442 (488)
.. +-+.--....+|+ +.++|+.+|+-.|-+...|.- +- +|-. +.|+++..+...
T Consensus 176 l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G-~~---------aGN~--~~E~~v~~l~~~ 238 (266)
T cd07944 176 LRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMG-RG---------AGNL--PTELLLDYLNNK 238 (266)
T ss_pred HHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCC-CC---------cCcH--HHHHHHHHHHHh
Confidence 32 3333334556665 568999999998888777765 21 1211 466777666655
No 374
>PLN02929 NADH kinase
Probab=32.09 E-value=97 Score=28.94 Aligned_cols=93 Identities=11% Similarity=0.138 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHH---HHcCCcEEEeCCCCCc----cce
Q psy15555 343 VKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVEC---MAAGLIMIAHKSGGPK----MDI 415 (488)
Q Consensus 343 ~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa---~a~G~PvI~~~~~~~~----~ei 415 (488)
.+.+++..++.|+. +...- ..++......+|++|.- |+--+++-| +..++||+.-|.+... +++
T Consensus 36 ~~~~~~~L~~~gi~--~~~v~---r~~~~~~~~~~Dlvi~l----GGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~ 106 (301)
T PLN02929 36 VNFCKDILQQKSVD--WECVL---RNELSQPIRDVDLVVAV----GGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEY 106 (301)
T ss_pred HHHHHHHHHHcCCE--EEEee---ccccccccCCCCEEEEE----CCcHHHHHHHHHcCCCCcEEEEECCCccccccccc
Confidence 35566666666642 22211 12333445678854432 112244444 3457999998876210 011
Q ss_pred eccCCCccccceecC-CHHHHHHHHHHHHc
Q psy15555 416 VIEDPETCRNGFLAC-DEVEYAQTIKLILH 444 (488)
Q Consensus 416 v~~~~~~~~~g~~~~-~~~~l~~~i~~ll~ 444 (488)
..+.|+....|++++ +++++.+.+.++++
T Consensus 107 ~~~~~~~r~lGfL~~~~~~~~~~~L~~il~ 136 (301)
T PLN02929 107 SDEFDARRSTGHLCAATAEDFEQVLDDVLF 136 (301)
T ss_pred ccccccccCccccccCCHHHHHHHHHHHHc
Confidence 111111115799988 89999999999997
No 375
>COG3580 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.88 E-value=4.3e+02 Score=24.72 Aligned_cols=73 Identities=4% Similarity=-0.059 Sum_probs=44.9
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh-CcEEEEcCCCCcCCccHHHHHHcCCcE
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE-GLIGLHAMWNEHFGIGIVECMAAGLIM 403 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~-ad~~v~~s~~e~~g~~~lEa~a~G~Pv 403 (488)
.+++++-+... +++-..--+.. ++.+.|--.++++-+..+... +|....|+..--.+-. -+---..||+
T Consensus 47 Gf~VVlS~~S~--------kely~~G~~ti-~sevCfPaki~HGHi~~L~~K~~d~IFyP~l~~~~~E~-~a~n~~~CP~ 116 (351)
T COG3580 47 GFRVVLSPKSS--------KELYEKGIETI-PSEVCFPAKISHGHIMDLIKKGIDYIFYPCLRYIKSEQ-SANNHYNCPI 116 (351)
T ss_pred CceEEeCCCCc--------HHHHHhhhhhC-CccceeceeechhHHHHHHHcCCCeEEecccccccccc-cccccccCcc
Confidence 56655555442 33333333333 334888888899999999998 9987788743322222 2333467899
Q ss_pred EEeC
Q psy15555 404 IAHK 407 (488)
Q Consensus 404 I~~~ 407 (488)
+++-
T Consensus 117 V~~~ 120 (351)
T COG3580 117 VQSY 120 (351)
T ss_pred ccCc
Confidence 8754
No 376
>PLN02285 methionyl-tRNA formyltransferase
Probab=31.77 E-value=3e+02 Score=26.28 Aligned_cols=100 Identities=18% Similarity=0.099 Sum_probs=0.0
Q ss_pred cccEEEEeccCCCCCCCceehHHHHHHHHHHhC----CCeeEEEEeCCCCCC-----------hhHHHHHhhhhcccccC
Q psy15555 51 VLKTVAFFHPYCNAGGGGERVLWTAVLALHQKY----PDYKIYIYTGDVDAS-----------PSEIIKRAHQRFNIVLP 115 (488)
Q Consensus 51 ~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~----~~~~v~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 115 (488)
++|||+|+ |.........++|.+.. .+++++.+.+.++.. ..+....
T Consensus 5 ~~~kI~f~--------Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~---------- 66 (334)
T PLN02285 5 RKKRLVFL--------GTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALD---------- 66 (334)
T ss_pred CccEEEEE--------ECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHH----------
Q ss_pred CCeeE---EEEeeccceeeccCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhhhhhCCCeeEEEEe
Q psy15555 116 DQVIN---FVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIH 189 (488)
Q Consensus 116 ~~~v~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h 189 (488)
.+ ++ +........ -.....++..+||+++... |...++.--...-..-++.+|
T Consensus 67 ~g-Ip~~~v~~~~~~~~-------------------~~~~~~l~~~~~Dliv~~~-~~~ilp~~~l~~~~~g~iNiH 122 (334)
T PLN02285 67 RG-FPPDLIFTPEKAGE-------------------EDFLSALRELQPDLCITAA-YGNILPQKFLDIPKLGTVNIH 122 (334)
T ss_pred cC-CCcceecCccccCC-------------------HHHHHHHHhhCCCEEEhhH-hhhhcCHHHHhhccCCEEEEe
No 377
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=31.72 E-value=48 Score=27.35 Aligned_cols=66 Identities=21% Similarity=0.179 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCC--ChHHHHHHHHhCc-EEEEcCC-------CCcCC--ccHHHHHHcCCcEEEeCCC
Q psy15555 342 CVKDMQDLCKHLSLENNVEFKVNL--PYEDMKKEFSEGL-IGLHAMW-------NEHFG--IGIVECMAAGLIMIAHKSG 409 (488)
Q Consensus 342 ~~~~l~~~~~~~~l~~~v~~~g~~--~~~el~~~~~~ad-~~v~~s~-------~e~~g--~~~lEa~a~G~PvI~~~~~ 409 (488)
|++++++..+++|+. +..+... +.+++.+.+..|| +++.+-. ....+ ..+-|+...|.|++.+..|
T Consensus 1 y~~~~~~~f~~~g~~--v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAG 78 (154)
T PF03575_consen 1 YVEKFRKAFRKLGFE--VDQLDLSDRNDADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVIIGTSAG 78 (154)
T ss_dssp HHHHHHHHHHHCT-E--EEECCCTSCGHHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHH
T ss_pred CHHHHHHHHHHCCCE--EEEEeccCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChH
Confidence 456778888888864 6666654 3568999999999 4554321 11112 2456788899888886543
No 378
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=31.68 E-value=2.4e+02 Score=27.06 Aligned_cols=91 Identities=12% Similarity=0.032 Sum_probs=49.3
Q ss_pred CeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccC-ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCCh
Q psy15555 289 PVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWD-NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPY 367 (488)
Q Consensus 289 ~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~-~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 367 (488)
+..++.+|. . . | ...++++.++ + ++.++-+-+.. . +..++.++++|++ . +.+.
T Consensus 3 ~~rVgViG~-~-~-G-~~h~~al~~~---------~~~~eLvaV~d~~----~---erA~~~A~~~gi~----~--y~~~ 56 (343)
T TIGR01761 3 VQSVVVCGT-R-F-G-QFYLAAFAAA---------PERFELAGILAQG----S---ERSRALAHRLGVP----L--YCEV 56 (343)
T ss_pred CcEEEEEeH-H-H-H-HHHHHHHHhC---------CCCcEEEEEEcCC----H---HHHHHHHHHhCCC----c--cCCH
Confidence 456677776 2 2 2 2345666554 3 56665444321 1 4556667777643 1 2222
Q ss_pred HHHHHHHHhCcE--EEEcCCCCcCC--ccHHHHHHcCCcEEEeCC
Q psy15555 368 EDMKKEFSEGLI--GLHAMWNEHFG--IGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 368 ~el~~~~~~ad~--~v~~s~~e~~g--~~~lEa~a~G~PvI~~~~ 408 (488)
+|+ +...|+ +..++...+.- -...+|+..|+.|++-..
T Consensus 57 eel---l~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKP 98 (343)
T TIGR01761 57 EEL---PDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHP 98 (343)
T ss_pred HHH---hcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCC
Confidence 544 466663 33333322222 246789999999999554
No 379
>PRK06932 glycerate dehydrogenase; Provisional
Probab=31.62 E-value=3.3e+02 Score=25.67 Aligned_cols=44 Identities=9% Similarity=0.034 Sum_probs=29.1
Q ss_pred HHHHHHHHhCcEEEE-cC-CCCc---CCccHHHHHHcCCcEEEeCCCCC
Q psy15555 368 EDMKKEFSEGLIGLH-AM-WNEH---FGIGIVECMAAGLIMIAHKSGGP 411 (488)
Q Consensus 368 ~el~~~~~~ad~~v~-~s-~~e~---~g~~~lEa~a~G~PvI~~~~~~~ 411 (488)
.++.++++.||+++. .. ..++ ++-..++.|--|.-+|-...|+.
T Consensus 189 ~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~ 237 (314)
T PRK06932 189 TPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPL 237 (314)
T ss_pred CCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccc
Confidence 468899999996543 22 3333 45567888877877777665544
No 380
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=31.52 E-value=3.1e+02 Score=24.71 Aligned_cols=68 Identities=15% Similarity=0.052 Sum_probs=43.3
Q ss_pred CCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHH-hCc-
Q psy15555 301 EKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS-EGL- 378 (488)
Q Consensus 301 ~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~-~ad- 378 (488)
..|++.+++.+++. .+.-+++++-|. |..+++.+.++++|+..-+.+.+..+.+.+..+.. ..|
T Consensus 90 ~~G~~~fi~~~~~a----------G~~giiipDl~~----ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~ 155 (242)
T cd04724 90 QYGLERFLRDAKEA----------GVDGLIIPDLPP----EEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGF 155 (242)
T ss_pred HhCHHHHHHHHHHC----------CCcEEEECCCCH----HHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCC
Confidence 34567666665543 455567766442 45678889999999864444555556777888887 556
Q ss_pred EEEE
Q psy15555 379 IGLH 382 (488)
Q Consensus 379 ~~v~ 382 (488)
++++
T Consensus 156 vy~~ 159 (242)
T cd04724 156 IYYV 159 (242)
T ss_pred EEEE
Confidence 4443
No 381
>COG1273 Ku-homolog [Replication, recombination, and repair]
Probab=31.42 E-value=63 Score=29.12 Aligned_cols=133 Identities=12% Similarity=0.168 Sum_probs=72.0
Q ss_pred HHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCcc-HHHHHHcCCcE-EEeCCCCCc--cceeccC
Q psy15555 344 KDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIG-IVECMAAGLIM-IAHKSGGPK--MDIVIED 419 (488)
Q Consensus 344 ~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~-~lEa~a~G~Pv-I~~~~~~~~--~eiv~~~ 419 (488)
++++....+.. ..+.+..++|.+|+..+|-..-.++.|.....=..+ +-|||+.-.-+ |+--.-..+ .-+++..
T Consensus 79 eel~s~~~es~--kti~I~~Fvp~~eId~iyfD~pYYl~Pd~~g~~af~lLReam~~~~~~aIar~vl~~Rer~v~Lrp~ 156 (278)
T COG1273 79 EELESVPLEST--KTIEIEAFVPRDEIDPIYFDKPYYLAPDKVGEKAFALLREAMAETKKVAIARLVLRRRERLVLLRPR 156 (278)
T ss_pred HHHhhcccccc--ceEeEEeecCHhhcCceeecCceeecCCCCcchHHHHHHHHHHHcCcchhhhhhhhccceeEEEEec
Confidence 55655554432 468888999999999999888888888722211222 44777652222 221111111 1234444
Q ss_pred CCccccceecC---------CHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHhhhhh
Q psy15555 420 PETCRNGFLAC---------DEVEYAQTIKLILHLSQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQPLFKVM 484 (488)
Q Consensus 420 ~~~~~~g~~~~---------~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~~~~~~~ 484 (488)
++|++.. ++++....|-..-. +++..+ +.+.-.... ..|+.+.+.++|.+.+.+++..+
T Consensus 157 ----~~glv~~TL~~~dEVRs~d~~f~~i~~~~~-d~eml~-lA~~lI~~~~~~fdp~~y~D~y~~aL~elI~aK 225 (278)
T COG1273 157 ----GKGLVLTTLRYPDEVRSPDEYFPGIPDIKI-DPEMLE-LAKQLIDKKTGTFDPDEYEDRYQEALMELIEAK 225 (278)
T ss_pred ----CCcEEEEEecCchhccChhhhcCCCCcccC-CHHHHH-HHHHHHHHhcCCCChHHccCHHHHHHHHHHHHH
Confidence 5565532 34443222222222 444333 333333333 77999888888888887777644
No 382
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=31.22 E-value=4.4e+02 Score=24.63 Aligned_cols=87 Identities=13% Similarity=-0.013 Sum_probs=54.0
Q ss_pred HHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCC
Q psy15555 306 LQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMW 385 (488)
Q Consensus 306 ~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~ 385 (488)
.+++.+....+++ .++++++.-+.|..+ ...+.+..++.|++ ++++.. ..+..+++.+|.++.++.
T Consensus 131 ~v~~~l~~A~~~~-----k~~~V~VtESRP~~e----G~~~ak~L~~~gI~--~~~I~D---sa~~~~~~~vd~VivGad 196 (301)
T COG1184 131 TVLEVLKTAADRG-----KRFKVIVTESRPRGE----GRIMAKELRQSGIP--VTVIVD---SAVGAFMSRVDKVLVGAD 196 (301)
T ss_pred HHHHHHHHhhhcC-----CceEEEEEcCCCcch----HHHHHHHHHHcCCc--eEEEec---hHHHHHHHhCCEEEECcc
Confidence 3344444455544 567888888877653 24556666677754 444443 789999999996666552
Q ss_pred --CCcC------Ccc--HHHHHHcCCcEEEe
Q psy15555 386 --NEHF------GIG--IVECMAAGLIMIAH 406 (488)
Q Consensus 386 --~e~~------g~~--~lEa~a~G~PvI~~ 406 (488)
.+.+ |.. .+=|-..|+|+++-
T Consensus 197 ~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~ 227 (301)
T COG1184 197 AILANGALVNKIGTSPLALAARELRVPFYVV 227 (301)
T ss_pred ceecCCcEEeccchHHHHHHHHHhCCCEEEE
Confidence 2222 222 34566679999983
No 383
>KOG3111|consensus
Probab=31.02 E-value=1.5e+02 Score=25.53 Aligned_cols=55 Identities=15% Similarity=0.115 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCc-CCccHHHHHH
Q psy15555 344 KDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEH-FGIGIVECMA 398 (488)
Q Consensus 344 ~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~-~g~~~lEa~a 398 (488)
.++.+.+++.|..-.+-+.+..+-+++..+....|..+.-+-.++ +|.+.+|-|.
T Consensus 102 ~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQkFme~mm 157 (224)
T KOG3111|consen 102 AELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKFMEDMM 157 (224)
T ss_pred HHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchhhhHHHHH
Confidence 678888888888777777777788999999999994444344444 4678877764
No 384
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=30.73 E-value=3.6e+02 Score=23.44 Aligned_cols=72 Identities=7% Similarity=0.144 Sum_probs=40.7
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEE
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMI 404 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI 404 (488)
...++++.... .+++.++++. ..+.+.... -....+..+|+++..+..+.....+.+....|++|-
T Consensus 33 ga~V~VIs~~~-------~~~l~~l~~~----~~i~~~~~~---~~~~~l~~adlViaaT~d~elN~~i~~~a~~~~lvn 98 (202)
T PRK06718 33 GAHIVVISPEL-------TENLVKLVEE----GKIRWKQKE---FEPSDIVDAFLVIAATNDPRVNEQVKEDLPENALFN 98 (202)
T ss_pred CCeEEEEcCCC-------CHHHHHHHhC----CCEEEEecC---CChhhcCCceEEEEcCCCHHHHHHHHHHHHhCCcEE
Confidence 34566665322 1556666543 235554432 112346778977776655544556666667788887
Q ss_pred EeCCCC
Q psy15555 405 AHKSGG 410 (488)
Q Consensus 405 ~~~~~~ 410 (488)
+.+.+.
T Consensus 99 ~~d~~~ 104 (202)
T PRK06718 99 VITDAE 104 (202)
T ss_pred ECCCCc
Confidence 766543
No 385
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=30.69 E-value=2.3e+02 Score=25.05 Aligned_cols=157 Identities=10% Similarity=0.107 Sum_probs=77.9
Q ss_pred eEEEEeeccCCCCChHHHHHHHHH-hHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChH
Q psy15555 290 VKIISVAQFRPEKDHPLQLRAMYQ-LRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYE 368 (488)
Q Consensus 290 ~~i~~~g~~~~~k~~~~ll~a~~~-l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 368 (488)
+.++|.+ .+-.|- .++.|+.. +.+.. |+.+++.+... +...++....++ +.. +
T Consensus 36 ~l~l~G~-~G~GKT--HLL~Ai~~~~~~~~-----~~~~v~y~~~~------~f~~~~~~~~~~----------~~~--~ 89 (219)
T PF00308_consen 36 PLFLYGP-SGLGKT--HLLQAIANEAQKQH-----PGKRVVYLSAE------EFIREFADALRD----------GEI--E 89 (219)
T ss_dssp EEEEEES-TTSSHH--HHHHHHHHHHHHHC-----TTS-EEEEEHH------HHHHHHHHHHHT----------TSH--H
T ss_pred ceEEECC-CCCCHH--HHHHHHHHHHHhcc-----ccccceeecHH------HHHHHHHHHHHc----------ccc--h
Confidence 4555533 333444 34666544 44444 56666655532 333444443332 223 7
Q ss_pred HHHHHHHhCcEEEEcCCCCcCCc---------cHHHHHHcCCcEEEeCCCCCc------cceeccCCCccccceecC---
Q psy15555 369 DMKKEFSEGLIGLHAMWNEHFGI---------GIVECMAAGLIMIAHKSGGPK------MDIVIEDPETCRNGFLAC--- 430 (488)
Q Consensus 369 el~~~~~~ad~~v~~s~~e~~g~---------~~lEa~a~G~PvI~~~~~~~~------~eiv~~~~~~~~~g~~~~--- 430 (488)
++..-|..+|+++.--...-.+. .+=.....|+++|.+....+. +++.... ..|..++
T Consensus 90 ~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl----~~Gl~~~l~~ 165 (219)
T PF00308_consen 90 EFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRL----SWGLVVELQP 165 (219)
T ss_dssp HHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHH----HCSEEEEE--
T ss_pred hhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhH----hhcchhhcCC
Confidence 78888999998776432211121 122445679999986544332 1222222 4566654
Q ss_pred -CHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHhh
Q psy15555 431 -DEVEYAQTIKLILHLSQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQPLF 481 (488)
Q Consensus 431 -~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~~~~ 481 (488)
|.++..+.+.+... .. .-.+.+.+.+++ ++++ +-...+..+++++.
T Consensus 166 pd~~~r~~il~~~a~-~~--~~~l~~~v~~~l~~~~~--~~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 166 PDDEDRRRILQKKAK-ER--GIELPEEVIEYLARRFR--RDVRELEGALNRLD 213 (219)
T ss_dssp --HHHHHHHHHHHHH-HT--T--S-HHHHHHHHHHTT--SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-Hh--CCCCcHHHHHHHHHhhc--CCHHHHHHHHHHHH
Confidence 66777777776654 21 223566666666 5532 22355555555543
No 386
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.62 E-value=2.4e+02 Score=26.30 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=33.9
Q ss_pred HhCcEEEEcCCCCcCCccHHHHHH----cCCcEEEeCCCCCccceeccCCCccccceecC-CHHHHHHHHHHHHc
Q psy15555 375 SEGLIGLHAMWNEHFGIGIVECMA----AGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKLILH 444 (488)
Q Consensus 375 ~~ad~~v~~s~~e~~g~~~lEa~a----~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~ 444 (488)
..+|+++.- |+--+++.|+. .++||+.-+.|. -|++.+ +++++.+++.++++
T Consensus 62 ~~~d~vi~l----GGDGT~L~aa~~~~~~~~Pilgin~G~--------------lGFl~~~~~~~~~~~l~~i~~ 118 (292)
T PRK03378 62 QQADLAIVV----GGDGNMLGAARVLARYDIKVIGINRGN--------------LGFLTDLDPDNALQQLSDVLE 118 (292)
T ss_pred CCCCEEEEE----CCcHHHHHHHHHhcCCCCeEEEEECCC--------------CCcccccCHHHHHHHHHHHHc
Confidence 357854432 12235665553 378998876542 277766 78999999999987
No 387
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=30.54 E-value=89 Score=24.56 Aligned_cols=40 Identities=10% Similarity=0.178 Sum_probs=20.5
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
|||+|+...+....=..-....++.+-.++ ||+++.+...
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~R--Ghev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRR--GHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHT--T-EEEEE-GG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHC--CCEEEEEEcC
Confidence 799998765542210112344566777788 6777666544
No 388
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=30.47 E-value=3.6e+02 Score=27.88 Aligned_cols=38 Identities=13% Similarity=0.063 Sum_probs=28.4
Q ss_pred HHHHHHHHh--CcEEEEcCCC-CcCCccHHHHHH--cCCcEEE
Q psy15555 368 EDMKKEFSE--GLIGLHAMWN-EHFGIGIVECMA--AGLIMIA 405 (488)
Q Consensus 368 ~el~~~~~~--ad~~v~~s~~-e~~g~~~lEa~a--~G~PvI~ 405 (488)
..+.+..+. .|++|+.|.. ..|.-.++++|+ +..|||.
T Consensus 391 ~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIF 433 (581)
T PLN03129 391 ASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIF 433 (581)
T ss_pred CCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 467777788 8899998853 456667888887 6777776
No 389
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=30.32 E-value=3.7e+02 Score=25.30 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=27.4
Q ss_pred HHHHHHHHhCcEEE-EcC-CCCc---CCccHHHHHHcCCcEEEeCCCCC
Q psy15555 368 EDMKKEFSEGLIGL-HAM-WNEH---FGIGIVECMAAGLIMIAHKSGGP 411 (488)
Q Consensus 368 ~el~~~~~~ad~~v-~~s-~~e~---~g~~~lEa~a~G~PvI~~~~~~~ 411 (488)
.++.++++.||+++ ... ..++ ++-..++.|--|.-+|-+.-|+.
T Consensus 188 ~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~v 236 (311)
T PRK08410 188 VSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGI 236 (311)
T ss_pred ecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccc
Confidence 46888899999544 322 3333 45567777777766666555443
No 390
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=30.04 E-value=1.9e+02 Score=27.88 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=47.3
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh-----CcEEEEcCCCCcCCccHH-----HH
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE-----GLIGLHAMWNEHFGIGIV-----EC 396 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~-----ad~~v~~s~~e~~g~~~l-----Ea 396 (488)
-+++.|..... -..+.+.+..+..|+...+.|.|..+.+|+.++-.. +|++++- | |-+++ =|
T Consensus 33 ~lvv~g~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~a~~~ev~~~~~~~~~~~~d~vIGV----G-GGk~iD~aK~~A 104 (360)
T COG0371 33 ALVVTGENTYA---IAGEKVEKSLKDEGLVVHVVFVGEASEEEVERLAAEAGEDGADVVIGV----G-GGKTIDTAKAAA 104 (360)
T ss_pred eEEEEChhHHH---HHHHHHHHHhcccCcceeeeecCccCHHHHHHHHHHhcccCCCEEEEe----c-CcHHHHHHHHHH
Confidence 46667755322 344666777777776667788888888888887774 4666652 2 33433 35
Q ss_pred HHcCCcEEEeCC
Q psy15555 397 MAAGLIMIAHKS 408 (488)
Q Consensus 397 ~a~G~PvI~~~~ 408 (488)
-..|+|+|+-+.
T Consensus 105 ~~~~~pfIsvPT 116 (360)
T COG0371 105 YRLGLPFISVPT 116 (360)
T ss_pred HHcCCCEEEecC
Confidence 567888888443
No 391
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=29.98 E-value=6e+02 Score=26.47 Aligned_cols=111 Identities=11% Similarity=-0.002 Sum_probs=56.4
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCC-------------cEEEec---CCChHHHHHHHHhCcE-EEEcCCCCcC
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLEN-------------NVEFKV---NLPYEDMKKEFSEGLI-GLHAMWNEHF 389 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~-------------~v~~~g---~~~~~el~~~~~~ad~-~v~~s~~e~~ 389 (488)
-++++|.+-... .-.++++++++.++++- +=.+.| ..........+..||+ ++.++....+
T Consensus 220 Pvil~G~g~~~~--~a~~~l~~lae~lg~PV~tt~~~kg~~~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~ 297 (585)
T CHL00099 220 PLLYVGGGAIIS--DAHQEITELAELYKIPVTTTLMGKGIFDEDHPLCLGMLGMHGTAYANFAVSECDLLIALGARFDDR 297 (585)
T ss_pred cEEEECCCCchh--chHHHHHHHHHHHCCCEEEccccCcCCCCCCCcccCCCCCCCCHHHHHHHHhCCEEEEECCCCccc
Confidence 468889885322 33588999999998851 111223 2223345678899994 4444432222
Q ss_pred CccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHHc
Q psy15555 390 GIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILH 444 (488)
Q Consensus 390 g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~ 444 (488)
...-.+...-+..+|.-+.... ++-... . ...-+..|..++.+++.+.+.
T Consensus 298 ~~~~~~~~~~~~~~i~id~d~~--~i~~~~--~-~~~~i~~D~~~~L~~L~~~l~ 347 (585)
T CHL00099 298 VTGKLDEFACNAQVIHIDIDPA--EIGKNR--I-PQVAIVGDVKKVLQELLELLK 347 (585)
T ss_pred ccCCHhHcCCCCeEEEEECCHH--HhCCCC--C-CCeEEecCHHHHHHHHHHHhh
Confidence 1111222333445665544211 222111 0 112334478877777766554
No 392
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=29.86 E-value=4.2e+02 Score=23.91 Aligned_cols=122 Identities=9% Similarity=0.042 Sum_probs=71.4
Q ss_pred ChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEE---ecCCChHHHHHHHHhCc-
Q psy15555 303 DHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEF---KVNLPYEDMKKEFSEGL- 378 (488)
Q Consensus 303 ~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~---~g~~~~~el~~~~~~ad- 378 (488)
.++.++++++..++.+ -.+.+.+........+.++..++.+.+.+.|. +.|.+ .|..+.+++.++++...
T Consensus 113 ~~~~~~~~i~~a~~~G-----~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~v~~li~~l~~ 186 (265)
T cd03174 113 DLENAEEAIEAAKEAG-----LEVEGSLEDAFGCKTDPEYVLEVAKALEEAGA-DEISLKDTVGLATPEEVAELVKALRE 186 (265)
T ss_pred HHHHHHHHHHHHHHCC-----CeEEEEEEeecCCCCCHHHHHHHHHHHHHcCC-CEEEechhcCCcCHHHHHHHHHHHHH
Confidence 4667777777777654 44444442222101345677777788888874 45555 35556666666555422
Q ss_pred ----EEEEcCCCCcCCc---cHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHH
Q psy15555 379 ----IGLHAMWNEHFGI---GIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLI 442 (488)
Q Consensus 379 ----~~v~~s~~e~~g~---~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~l 442 (488)
+-+.-...+..|+ +.++|+.+|+-.|-+...|.- +-. |-. +.++++..+...
T Consensus 187 ~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G-~~~---------Gn~--~~e~~~~~l~~~ 245 (265)
T cd03174 187 ALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLG-ERA---------GNA--ATEDLVAALEGL 245 (265)
T ss_pred hCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEecccccc-ccc---------cCc--cHHHHHHHHHhc
Confidence 2233333455554 578999999998877776664 221 211 466666666654
No 393
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=29.63 E-value=3.2e+02 Score=23.46 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=27.7
Q ss_pred ccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHH
Q psy15555 391 IGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTI 439 (488)
Q Consensus 391 ~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i 439 (488)
.-+.-|-.+|+++|....+....+-+... ...++++++.++.+.+
T Consensus 159 ~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~----~~~~~~~~~~~l~~~~ 203 (205)
T TIGR01454 159 TDLASARAAGTATVAALWGEGDAGELLAA----RPDFLLRKPQSLLALC 203 (205)
T ss_pred HHHHHHHHcCCeEEEEEecCCChhhhhhc----CCCeeeCCHHHHHHHh
Confidence 35677888999998765543221222222 4566778888876543
No 394
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=29.48 E-value=4.6e+02 Score=24.29 Aligned_cols=81 Identities=11% Similarity=-0.028 Sum_probs=46.3
Q ss_pred CCcEEEecC-CChH---HHHHHHHhCc-EEEEcCCCCcCCcc--HHHHHHcCCcEEEeCCCCCccceeccCCCcccccee
Q psy15555 356 ENNVEFKVN-LPYE---DMKKEFSEGL-IGLHAMWNEHFGIG--IVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFL 428 (488)
Q Consensus 356 ~~~v~~~g~-~~~~---el~~~~~~ad-~~v~~s~~e~~g~~--~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~ 428 (488)
.++|++.|. ++.+ +..+.++.+| +++.++.....+.. +-.+...|.|+|.-|..... ..+ ...+.
T Consensus 190 rP~Vv~FgE~lp~~~~~~a~~~~~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~---~~~-----~~~~~ 261 (285)
T PRK05333 190 KPDVVFFGENVPRERVAAARAALDAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTR---ADP-----LLTLK 261 (285)
T ss_pred cCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCceecchhhhHHHHHHCCCeEEEECCCCCC---CCc-----ceeEE
Confidence 466777665 4543 3566788899 44455544444432 23455679999998874322 111 12333
Q ss_pred cC-CHHHHHHHHHHHHc
Q psy15555 429 AC-DEVEYAQTIKLILH 444 (488)
Q Consensus 429 ~~-~~~~l~~~i~~ll~ 444 (488)
+. +..+....|.+.+.
T Consensus 262 i~g~~~evL~~l~~~l~ 278 (285)
T PRK05333 262 VEASCAQALAALVARLG 278 (285)
T ss_pred EeCCHHHHHHHHHHHhC
Confidence 33 77777776655543
No 395
>PRK11204 N-glycosyltransferase; Provisional
Probab=29.48 E-value=5.5e+02 Score=25.17 Aligned_cols=47 Identities=19% Similarity=0.376 Sum_probs=27.4
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHH-hCCCeeEEEEeCCCCCChhHHH
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQ-KYPDYKIYIYTGDVDASPSEII 103 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~-~~~~~~v~~~~~~~~~~~~~~~ 103 (488)
.+|.++.|..+ ++..+...++.+.+ .+|..++++.....+....+..
T Consensus 54 p~vsViIp~yn----e~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l 101 (420)
T PRK11204 54 PGVSILVPCYN----EGENVEETISHLLALRYPNYEVIAINDGSSDNTGEIL 101 (420)
T ss_pred CCEEEEEecCC----CHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHH
Confidence 56777777665 23345555565554 4677888887765443333333
No 396
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=29.02 E-value=3.4e+02 Score=22.57 Aligned_cols=47 Identities=13% Similarity=0.059 Sum_probs=31.0
Q ss_pred HHHHHHHHhCcEEEEcCCCCcCCc--cHHHHHHcCCcEEEeCCCCCcccee
Q psy15555 368 EDMKKEFSEGLIGLHAMWNEHFGI--GIVECMAAGLIMIAHKSGGPKMDIV 416 (488)
Q Consensus 368 ~el~~~~~~ad~~v~~s~~e~~g~--~~lEa~a~G~PvI~~~~~~~~~eiv 416 (488)
+.-.-+...||++|... .+.|. .+.|++..++||+.-+..+...+++
T Consensus 83 ~Rk~~m~~~sda~Ivlp--GG~GTL~E~~~a~~~~kpv~~l~~~g~~~~~l 131 (159)
T TIGR00725 83 ARNFILVRSADVVVSVG--GGYGTAIEILGAYALGGPVVVLRGTGGWTDRL 131 (159)
T ss_pred hHHHHHHHHCCEEEEcC--CchhHHHHHHHHHHcCCCEEEEECCCcchHHH
Confidence 45566778899666542 24442 4789999999998877655443433
No 397
>PRK06487 glycerate dehydrogenase; Provisional
Probab=28.80 E-value=3.5e+02 Score=25.56 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=28.1
Q ss_pred HHHHHHHHhCcEEEE-cC-CCCc---CCccHHHHHHcCCcEEEeCCCCC
Q psy15555 368 EDMKKEFSEGLIGLH-AM-WNEH---FGIGIVECMAAGLIMIAHKSGGP 411 (488)
Q Consensus 368 ~el~~~~~~ad~~v~-~s-~~e~---~g~~~lEa~a~G~PvI~~~~~~~ 411 (488)
.++.++++.||+++. .. ..++ ++-..++.|--|.-+|-+.-|+.
T Consensus 189 ~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~v 237 (317)
T PRK06487 189 LPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGL 237 (317)
T ss_pred cCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccc
Confidence 367889999995543 22 2333 45567788877777776655544
No 398
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=28.75 E-value=1.5e+02 Score=28.25 Aligned_cols=115 Identities=13% Similarity=0.193 Sum_probs=60.9
Q ss_pred HHHHHHHHhHHhhhhhccCceEEEE---EecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCc-EEE
Q psy15555 306 LQLRAMYQLRQIISEELWDNLKLIF---IGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGL-IGL 381 (488)
Q Consensus 306 ~ll~a~~~l~~~~~~~~~~~~~l~i---vG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad-~~v 381 (488)
.+-|...+|++++ -++++-| +||-|.. +.-+ ..+.+++ |---...||+.+-+.++| ++|
T Consensus 327 ~v~E~~~~L~~~G-----v~VrfaIHPVAGRmPGH-----MNVL---LAEA~Vp----Yd~v~emddIN~dF~~tDVvlV 389 (463)
T COG1282 327 PVAEITEKLRARG-----VNVRFAIHPVAGRMPGH-----MNVL---LAEAKVP----YDIVLEMDEINDDFADTDVVLV 389 (463)
T ss_pred HHHHHHHHHHhcC-----CeeeEeecccccCCCcc-----hhhh---hhhccCC----HHHHhhHHhhcchhccccEEEE
Confidence 3344455555555 5677765 5566632 2223 2332222 212223478888999999 455
Q ss_pred EcC-----------CCCcCCccHHHHHHcCCcEEEeCC-----CCCccceeccCCCccccceecCCHHHHHHHHHH
Q psy15555 382 HAM-----------WNEHFGIGIVECMAAGLIMIAHKS-----GGPKMDIVIEDPETCRNGFLACDEVEYAQTIKL 441 (488)
Q Consensus 382 ~~s-----------~~e~~g~~~lEa~a~G~PvI~~~~-----~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ 441 (488)
.+. ..+-+|++++|.--+..-++.-.. .|...+++-.. ++-.++.|.+...+.|.+
T Consensus 390 IGANDvvNPAA~~D~SPI~GMPiLeV~KAk~viv~KRsM~sGyAGv~N~LFy~d----~T~MlFGDAKk~V~~i~k 461 (463)
T COG1282 390 IGANDVVNPAAQDDNSPIAGMPVLEVWKAKTVIVFKRSMNSGYAGVQNPLFYKD----NTMMLFGDAKKSVDEILK 461 (463)
T ss_pred EccCCCCChhhccCCCCcCCCceeeeeccceEEEEeccccccccccCCcceecc----CcEEEeccHHHHHHHHHh
Confidence 443 123467788887777666555222 22222343333 345556677766666544
No 399
>PLN02928 oxidoreductase family protein
Probab=28.69 E-value=3.6e+02 Score=25.88 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=27.8
Q ss_pred ChHHHHHHHHhCcEEEEcC--CCCc---CCccHHHHHHcCCcEEEeCCCC
Q psy15555 366 PYEDMKKEFSEGLIGLHAM--WNEH---FGIGIVECMAAGLIMIAHKSGG 410 (488)
Q Consensus 366 ~~~el~~~~~~ad~~v~~s--~~e~---~g~~~lEa~a~G~PvI~~~~~~ 410 (488)
+..++.++++.||+++... ..++ ++-..++.|--|.-+|-..-|+
T Consensus 216 ~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~ 265 (347)
T PLN02928 216 GHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGG 265 (347)
T ss_pred cccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCcc
Confidence 3468999999999655432 2232 3445677777676666554443
No 400
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=28.57 E-value=1.8e+02 Score=26.94 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=13.9
Q ss_pred HHHHhhhcCCcEEEecCC
Q psy15555 151 GVEALLSFQPDIYIDTMG 168 (488)
Q Consensus 151 ~~~~l~~~~pDiii~~~~ 168 (488)
+.+.+++.+||+||++-.
T Consensus 42 v~~~i~~~~PDvVIn~AA 59 (281)
T COG1091 42 VLEVIRETRPDVVINAAA 59 (281)
T ss_pred HHHHHHhhCCCEEEECcc
Confidence 556788889999987643
No 401
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=28.57 E-value=1.5e+02 Score=30.47 Aligned_cols=94 Identities=16% Similarity=0.108 Sum_probs=59.6
Q ss_pred HHHHHHHHhcCCCCc---EEEecCCChHHHHHHHHhCcEEEEcC---CCCcCCccHHHHHHc-C--CcEEEeCCCCCccc
Q psy15555 344 KDMQDLCKHLSLENN---VEFKVNLPYEDMKKEFSEGLIGLHAM---WNEHFGIGIVECMAA-G--LIMIAHKSGGPKMD 414 (488)
Q Consensus 344 ~~l~~~~~~~~l~~~---v~~~g~~~~~el~~~~~~ad~~v~~s---~~e~~g~~~lEa~a~-G--~PvI~~~~~~~~~e 414 (488)
.++.+...+.|+... -.|+-.++.+-+.++-...+.+|.-. ...++|-.++|+++. | +||..- |..++
T Consensus 517 l~vae~L~~~Gi~~TVvd~rfvkPlD~~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~~~~v~~l---glpd~ 593 (627)
T COG1154 517 LKVAEKLNAYGISVTVVDPRFVKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGILVPVLNL---GLPDE 593 (627)
T ss_pred HHHHHHHHhcCCCcEEEcCeecCCCCHHHHHHHHhhcCeEEEEecCcccccHHHHHHHHHHhcCCCCceEEe---cCChH
Confidence 455566666676533 34666677666888888888776543 466889999998876 4 455543 33346
Q ss_pred eeccCCCcccccee-cC---CHHHHHHHHHHHHc
Q psy15555 415 IVIEDPETCRNGFL-AC---DEVEYAQTIKLILH 444 (488)
Q Consensus 415 iv~~~~~~~~~g~~-~~---~~~~l~~~i~~ll~ 444 (488)
++.++ ...-+ .+ |.+.+++.|..++.
T Consensus 594 fi~hg----~~~el~~~~gLd~~~i~~~i~~~l~ 623 (627)
T COG1154 594 FIDHG----SPEELLAELGLDAEGIARRILEWLK 623 (627)
T ss_pred hhccC----CHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 66665 22222 11 77888888777765
No 402
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=28.56 E-value=3.7e+02 Score=24.48 Aligned_cols=64 Identities=9% Similarity=0.005 Sum_probs=44.8
Q ss_pred CCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCc
Q psy15555 301 EKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGL 378 (488)
Q Consensus 301 ~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad 378 (488)
..|.+.+++.+++. .+.-+++++-|. +..+++.+.++++|+..-..+.+..+.+.+..+.+.++
T Consensus 101 ~~G~e~f~~~~~~a----------GvdgviipDlp~----ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~ 164 (256)
T TIGR00262 101 RKGVEEFYAKCKEV----------GVDGVLVADLPL----EESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQ 164 (256)
T ss_pred hhhHHHHHHHHHHc----------CCCEEEECCCCh----HHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCC
Confidence 44667666666543 456677777664 44578888899999864444555566788999999999
No 403
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.44 E-value=3e+02 Score=25.26 Aligned_cols=86 Identities=12% Similarity=0.073 Sum_probs=49.5
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHc-----CCc
Q psy15555 328 LIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAA-----GLI 402 (488)
Q Consensus 328 l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~-----G~P 402 (488)
+.++..... ...+..+++.+++++.|.. ..-. ...+|+++.- |+--+++.|+.. .+|
T Consensus 5 i~iv~~~~~-~a~~~~~~l~~~l~~~g~~----~~~~---------~~~~D~vi~l----GGDGT~L~a~~~~~~~~~~p 66 (264)
T PRK03501 5 LFFFYKRDK-ELVEKVKPLKKIAEEYGFT----VVDH---------PKNANIIVSI----GGDGTFLQAVRKTGFREDCL 66 (264)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHCCCE----EEcC---------CCCccEEEEE----CCcHHHHHHHHHhcccCCCe
Confidence 444444322 3334455666666666542 1111 1347854431 223366766653 568
Q ss_pred EEEeCCCCCccceeccCCCccccceecC-CHHHHHHHHHHHHc
Q psy15555 403 MIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKLILH 444 (488)
Q Consensus 403 vI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~ 444 (488)
++.-+.+|. -|++.+ +++++.+++.++++
T Consensus 67 ilgIn~~G~-------------lGFL~~~~~~~~~~~l~~i~~ 96 (264)
T PRK03501 67 YAGISTKDQ-------------LGFYCDFHIDDLDKMIQAITK 96 (264)
T ss_pred EEeEecCCC-------------CeEcccCCHHHHHHHHHHHHc
Confidence 777666343 488877 88999999999887
No 404
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=28.44 E-value=6.7e+02 Score=25.81 Aligned_cols=111 Identities=10% Similarity=0.018 Sum_probs=55.2
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCC-------------cEEEecCC---ChHHHHHHHHhCc-EEEEcCCCCcC
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLEN-------------NVEFKVNL---PYEDMKKEFSEGL-IGLHAMWNEHF 389 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~-------------~v~~~g~~---~~~el~~~~~~ad-~~v~~s~~e~~ 389 (488)
-++++|.+-... .-.+++.++++.++.+- .=.+.|.. ........+..|| +++.++.....
T Consensus 199 PvIl~G~g~~~~--~a~~~l~~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~ 276 (548)
T PRK08978 199 PVLYVGGGVGMA--GAVPALREFLAATGMPAVATLKGLGAVEADHPYYLGMLGMHGTKAANLAVQECDLLIAVGARFDDR 276 (548)
T ss_pred CEEEECCCcccc--chHHHHHHHHHHHCCCEEEccccCCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEcCCCCcc
Confidence 478889874321 23478999999998851 11223322 2345677889999 44445432221
Q ss_pred CccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHHc
Q psy15555 390 GIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILH 444 (488)
Q Consensus 390 g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~ 444 (488)
...-...+.-...+|--+... .++-... . ....+..|..++.+.+.+.+.
T Consensus 277 ~~~~~~~~~~~~~~i~id~d~--~~~~~~~--~-~~~~i~~d~~~~l~~l~~~~~ 326 (548)
T PRK08978 277 VTGKLNTFAPHAKVIHLDIDP--AEINKLR--Q-AHVALQGDLNALLPALQQPLN 326 (548)
T ss_pred ccCCccccCCCCeEEEEECCH--HHhCCCC--C-CCeEEecCHHHHHHHHHHhcc
Confidence 111111222234455544321 1222211 0 112334478877777766543
No 405
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.42 E-value=3.3e+02 Score=25.63 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=35.0
Q ss_pred HhCcEEEEcCCCCcCCccHHHHHH----cCCcEEEeCCCCCccceeccCCCccccceecC-CHHHHHHHHHHHHc
Q psy15555 375 SEGLIGLHAMWNEHFGIGIVECMA----AGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKLILH 444 (488)
Q Consensus 375 ~~ad~~v~~s~~e~~g~~~lEa~a----~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~ 444 (488)
..+|+++.- |+--+++.|+. .++|++.-+.| .-|++.+ +++++.+++.++++
T Consensus 71 ~~~D~vi~l----GGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~~~~~~~~~~~l~~i~~ 127 (306)
T PRK03372 71 DGCELVLVL----GGDGTILRAAELARAADVPVLGVNLG--------------HVGFLAEAEAEDLDEAVERVVD 127 (306)
T ss_pred cCCCEEEEE----cCCHHHHHHHHHhccCCCcEEEEecC--------------CCceeccCCHHHHHHHHHHHHc
Confidence 357854432 12235555543 48899887753 2388887 88999999999987
No 406
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=28.25 E-value=4.9e+02 Score=29.58 Aligned_cols=44 Identities=20% Similarity=0.160 Sum_probs=29.3
Q ss_pred cccEEEEeccCCCCCC-Cce--ehHHHHHHHHHHhCCCeeEEEEeCCCC
Q psy15555 51 VLKTVAFFHPYCNAGG-GGE--RVLWTAVLALHQKYPDYKIYIYTGDVD 96 (488)
Q Consensus 51 ~~~rI~~~~~~~~~~g-G~e--~~~~~l~~~L~~~~~~~~v~~~~~~~~ 96 (488)
.++||+++.......| |.| -.+.+++++|++. |+++++....+.
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~--G~~vI~vn~npe 600 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKE--GYETIMINNNPE 600 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHc--CCEEEEEeCCcc
Confidence 3577877654433233 454 4678899999998 777777776643
No 407
>TIGR00182 plsX fatty acid/phospholipid synthesis protein PlsX. This protein of fatty acid/phospholipid biosynthesis, called PlsX after the member in Streptococcus pneumoniae, is proposed to be a phosphate acyltransferase that partners with PlsY (TIGR00023) in a two-step 1-acylglycerol-3-phosphate biosynthesis pathway alternative to the one-step PlsB (EC 2.3.1.15) pathway.
Probab=28.14 E-value=4.6e+02 Score=24.85 Aligned_cols=47 Identities=11% Similarity=0.265 Sum_probs=32.5
Q ss_pred CCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEec
Q psy15555 301 EKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKV 363 (488)
Q Consensus 301 ~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g 363 (488)
..++..++++..+..++. +.+.++++|+. +++++.+++.+ .++.++.
T Consensus 3 D~~p~~vv~aa~~a~~~~-----~~~~~iLvGd~---------~~I~~~l~~~~--~~i~Ii~ 49 (322)
T TIGR00182 3 DHAPSEVIDGVLKYASAN-----QDLHIILVGDK---------DAIEPHLDKLP--KNITIIH 49 (322)
T ss_pred CcChHHHHHHHHHHHHhC-----CCceEEEEcCH---------HHHHHHHHhCC--CCcEEEC
Confidence 457788888888844444 67899999975 66777776654 2455554
No 408
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=28.13 E-value=3.4e+02 Score=25.44 Aligned_cols=108 Identities=13% Similarity=0.116 Sum_probs=56.0
Q ss_pred HHHHHHHhCcEEEE-cCCCCcCCccHHHHHHcCC-cEEEeCCCCCc-cceecc---CCCccccceecC-CHHHHHHHHHH
Q psy15555 369 DMKKEFSEGLIGLH-AMWNEHFGIGIVECMAAGL-IMIAHKSGGPK-MDIVIE---DPETCRNGFLAC-DEVEYAQTIKL 441 (488)
Q Consensus 369 el~~~~~~ad~~v~-~s~~e~~g~~~lEa~a~G~-PvI~~~~~~~~-~eiv~~---~~~~~~~g~~~~-~~~~l~~~i~~ 441 (488)
+=..-++.||+++. +...|.|-..+++.+.... ++|... .+.. ...... + .....-|+-+ +...+++.|.+
T Consensus 74 ~di~~i~~ADliv~nG~~le~w~~k~~~~~~~~~~~~i~~s-~~i~~~~~~~~~~~g-~~dpH~Wldp~na~~~v~~I~~ 151 (303)
T COG0803 74 SDIAKLRKADLIVYNGLGLEPWLEKLLESADKKKVLVIEVS-DGIELLPLPGEEEEG-VNDPHVWLDPKNAKIYAENIAD 151 (303)
T ss_pred HHHHHHHhCCEEEEcCCChHHHHHHHHHhcccCCceEEEcc-CCccccCCCCccccC-CCCCCeecCHHHHHHHHHHHHH
Confidence 33456778886554 4456766667777665544 333322 2111 011111 0 0002233333 55555555554
Q ss_pred HH-ccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Q psy15555 442 IL-HLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPL 480 (488)
Q Consensus 442 ll-~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~ 480 (488)
-+ ..+|+......+|+.++.++ .+...+.+...++.+
T Consensus 152 ~L~~~dP~~~~~y~~N~~~y~~k--L~~l~~~~~~~~~~~ 189 (303)
T COG0803 152 ALVELDPENKETYEKNAEAYLKK--LNKLDEEAKAKLSKI 189 (303)
T ss_pred HHHHhCcccHHHHHHHHHHHHHH--HHHHHHHHHHHHhcC
Confidence 33 34888888898998877755 445555555544443
No 409
>KOG0832|consensus
Probab=27.89 E-value=4.4e+02 Score=23.48 Aligned_cols=42 Identities=21% Similarity=0.142 Sum_probs=30.3
Q ss_pred cCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEE
Q psy15555 353 LSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIA 405 (488)
Q Consensus 353 ~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~ 405 (488)
+.+++...|....+. |++|.....|. -.+++||.-+++|+|+
T Consensus 160 ~~~pd~~~f~~t~~~----------D~vvvln~~e~-~sAilEA~K~~IPTIg 201 (251)
T KOG0832|consen 160 LSLPDALCFLPTLTP----------DLVVVLNPEEN-HSAILEAAKMAIPTIG 201 (251)
T ss_pred cCCCcceeecccCCc----------ceeEecCcccc-cHHHHHHHHhCCCeEE
Confidence 345677777777643 86666555554 3479999999999998
No 410
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=27.82 E-value=2.8e+02 Score=26.71 Aligned_cols=78 Identities=9% Similarity=-0.013 Sum_probs=40.1
Q ss_pred HHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCC--ChHHHHHHHHhCc-EEEEc
Q psy15555 307 QLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNL--PYEDMKKEFSEGL-IGLHA 383 (488)
Q Consensus 307 ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~el~~~~~~ad-~~v~~ 383 (488)
.+-|+.++.+.++. -.-++..+-..|..+...+.+..++++.+.++ .++|-.+. ++.++...+...| ++..|
T Consensus 24 ~~lAI~eINa~GGv---lG~~le~v~~Dp~Sd~~~ya~~A~~Li~~d~V--~~ifGc~TSasRKaVlPvvE~~~~LL~Yp 98 (363)
T PF13433_consen 24 ALLAIEEINAAGGV---LGRQLEPVIYDPASDPSTYAEKAEKLIREDGV--RAIFGCYTSASRKAVLPVVERHNALLFYP 98 (363)
T ss_dssp HHHHHHHHHCTTTB---TTB--EEEEE--TT-HHHHHHHHHHHHHHS-----EEEE--SHHHHHHHHHHHHHCT-EEEE-
T ss_pred HHHHHHHHHhcCCc---CCeEEEEEEECCCCCHHHHHHHHHHHHHhCCc--cEEEecchhhhHHHHHHHHHhcCceEEec
Confidence 34456666554421 12344444444444555677777788777664 35666665 5678999999999 77889
Q ss_pred CCCCcC
Q psy15555 384 MWNEHF 389 (488)
Q Consensus 384 s~~e~~ 389 (488)
+.+||+
T Consensus 99 ~~YEG~ 104 (363)
T PF13433_consen 99 TQYEGF 104 (363)
T ss_dssp S-----
T ss_pred cccccc
Confidence 888876
No 411
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=27.76 E-value=4e+02 Score=25.72 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=37.1
Q ss_pred cEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCC
Q psy15555 358 NVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 358 ~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~ 408 (488)
.+.+++++++++..+++-.||+-+. ..|. +.+-|..+|+|.|=.-+
T Consensus 243 ~~~~LPf~~Q~~yD~LLW~cD~NfV--RGED---SFVRAqWAgkPfvWhIY 288 (371)
T TIGR03837 243 TVAVLPFVPQDDYDRLLWACDLNFV--RGED---SFVRAQWAGKPFVWHIY 288 (371)
T ss_pred EEEEcCCCChhhHHHHHHhChhcEe--echh---HHHHHHHcCCCceeecc
Confidence 4788999999999999999996443 2232 88999999999997644
No 412
>KOG4131|consensus
Probab=27.76 E-value=78 Score=28.05 Aligned_cols=93 Identities=8% Similarity=0.088 Sum_probs=52.2
Q ss_pred eEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHH
Q psy15555 290 VKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYED 369 (488)
Q Consensus 290 ~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~e 369 (488)
..+.| ||...-|-...+.+.++++++.. +.+++-..-++. ++..++..++ -.|. ..
T Consensus 144 ~~~G~-gr~~e~~~~~~~~~~l~~ik~~l-----~~v~val~~g~~----------~~~~i~~V~v-----cAgs--g~- 199 (272)
T KOG4131|consen 144 ETIGY-GREEETKINLNVVEILKRIKRGL-----SSVRVALAVGHT----------LESQIKKVAV-----CAGS--GS- 199 (272)
T ss_pred ccccc-cceeeccCcccHHHHHHHHHhcC-----CeEEEeeccCCc----------cccceeEEEE-----eecc--Cc-
Confidence 45555 77776665555777888877655 566655533321 1122211111 0111 01
Q ss_pred HHHHHH--hCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCC
Q psy15555 370 MKKEFS--EGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGP 411 (488)
Q Consensus 370 l~~~~~--~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~ 411 (488)
.++. .||+++.+ |..-|-++++++.|+-||..++...
T Consensus 200 --svlk~~~adly~TG---EmSHH~vL~~~~~g~sVilc~HSNt 238 (272)
T KOG4131|consen 200 --SVLKGVDADLYITG---EMSHHDVLDAAANGISVILCEHSNT 238 (272)
T ss_pred --ceeccccccEEEec---cccHHHHHHHHHcCCeEEEecCCCc
Confidence 1222 27766653 5556789999999999999877543
No 413
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=27.63 E-value=3.7e+02 Score=22.62 Aligned_cols=87 Identities=14% Similarity=0.207 Sum_probs=52.8
Q ss_pred CCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCC
Q psy15555 287 DGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLP 366 (488)
Q Consensus 287 ~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 366 (488)
.++..+++.|-..-..-....+.-+.++.++.++. ..+++++.+--.|..+.+ +.+++.++..+ ++-.-+.|..
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~-~~~v~~v~ISvDP~~DTp---~~L~~Y~~~~~-~~~~~ltg~~- 124 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEE-GKDVQFVFISVDPERDTP---EVLKKYAKKFG-PDFIGLTGSR- 124 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHT-TTTEEEEEEESSTTTC-H---HHHHHHHHCHT-TTCEEEEEEH-
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhc-cCceEEEEEEeCCCCCCH---HHHHHHHHhcC-CCcceeEeCH-
Confidence 46788888885544333344445555554443222 258899999988876544 66777777776 3344555543
Q ss_pred hHHHHHHHHhCcEE
Q psy15555 367 YEDMKKEFSEGLIG 380 (488)
Q Consensus 367 ~~el~~~~~~ad~~ 380 (488)
+++.++.+...++
T Consensus 125 -~~i~~l~~~~~v~ 137 (174)
T PF02630_consen 125 -EEIEELAKQFGVY 137 (174)
T ss_dssp -HHHHHHHHHCTHC
T ss_pred -HHHHHHHHHHHhh
Confidence 7788877776643
No 414
>PRK06849 hypothetical protein; Provisional
Probab=27.59 E-value=3.3e+02 Score=26.47 Aligned_cols=36 Identities=14% Similarity=0.071 Sum_probs=26.0
Q ss_pred cccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCC
Q psy15555 51 VLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDV 95 (488)
Q Consensus 51 ~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~ 95 (488)
.+|+|++. ||......++++.|.+. |++|+++....
T Consensus 3 ~~~~VLI~-------G~~~~~~l~iar~l~~~--G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLIT-------GARAPAALELARLFHNA--GHTVILADSLK 38 (389)
T ss_pred CCCEEEEe-------CCCcHHHHHHHHHHHHC--CCEEEEEeCCc
Confidence 46888875 23334678999999998 77888776653
No 415
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=27.57 E-value=1.2e+02 Score=22.60 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=35.1
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcC
Q psy15555 328 LIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAM 384 (488)
Q Consensus 328 l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s 384 (488)
|...|.|-.. +.--...+++.++++|++..+.-. .+ ++.......+|+++...
T Consensus 5 L~aCG~GvgS-S~~ik~kve~~l~~~gi~~~~~~~-~v--~~~~~~~~~aDiiv~s~ 57 (93)
T COG3414 5 LAACGNGVGS-STMIKMKVEEVLKELGIDVDVEQC-AV--DEIKALTDGADIIVTST 57 (93)
T ss_pred EEECCCCccH-HHHHHHHHHHHHHHcCCCceeeeE-Ee--cccccCCCcccEEEEeh
Confidence 4566766432 223447889999999986443322 23 78888888999888654
No 416
>PRK14057 epimerase; Provisional
Probab=27.51 E-value=4.7e+02 Score=23.78 Aligned_cols=51 Identities=6% Similarity=-0.061 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCC---------CCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcC-CccHH
Q psy15555 344 KDMQDLCKHLSL---------ENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHF-GIGIV 394 (488)
Q Consensus 344 ~~l~~~~~~~~l---------~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~-g~~~l 394 (488)
.+..+.+++.|. ...+.+-+..|-+.+..++...|.++.-|-.+|| |...+
T Consensus 113 ~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLvMtV~PGfgGQ~Fi 173 (254)
T PRK14057 113 HHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRS 173 (254)
T ss_pred HHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEEEEEECCCCCchhcc
Confidence 556677777775 3568888888999999999999955444444444 44443
No 417
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=27.32 E-value=3.2e+02 Score=21.78 Aligned_cols=70 Identities=16% Similarity=0.125 Sum_probs=39.9
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCc--EE
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLI--MI 404 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~P--vI 404 (488)
++.++++.. +..+++++..+ ..++..... +++...+..+|+++..+..... ..--|.+..+.+ -+
T Consensus 38 ~i~i~nRt~--------~ra~~l~~~~~-~~~~~~~~~---~~~~~~~~~~DivI~aT~~~~~-~i~~~~~~~~~~~~~~ 104 (135)
T PF01488_consen 38 EITIVNRTP--------ERAEALAEEFG-GVNIEAIPL---EDLEEALQEADIVINATPSGMP-IITEEMLKKASKKLRL 104 (135)
T ss_dssp EEEEEESSH--------HHHHHHHHHHT-GCSEEEEEG---GGHCHHHHTESEEEE-SSTTST-SSTHHHHTTTCHHCSE
T ss_pred EEEEEECCH--------HHHHHHHHHcC-ccccceeeH---HHHHHHHhhCCeEEEecCCCCc-ccCHHHHHHHHhhhhc
Confidence 588899875 34445554442 234666655 7888999999988877644332 222344444443 14
Q ss_pred EeCCC
Q psy15555 405 AHKSG 409 (488)
Q Consensus 405 ~~~~~ 409 (488)
..|.+
T Consensus 105 v~Dla 109 (135)
T PF01488_consen 105 VIDLA 109 (135)
T ss_dssp EEES-
T ss_pred eeccc
Confidence 45554
No 418
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=27.25 E-value=95 Score=28.47 Aligned_cols=36 Identities=8% Similarity=0.004 Sum_probs=27.5
Q ss_pred HhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCC
Q psy15555 375 SEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGG 410 (488)
Q Consensus 375 ~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~ 410 (488)
..+|+++-.|..+..--.+.+++..|+|+|+...+.
T Consensus 67 ~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigttg~ 102 (266)
T TIGR00036 67 TDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGF 102 (266)
T ss_pred CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCCC
Confidence 568988877765555557889999999999866543
No 419
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=27.21 E-value=6.8e+02 Score=25.88 Aligned_cols=26 Identities=15% Similarity=-0.037 Sum_probs=20.8
Q ss_pred CceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 67 GGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 67 G~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
|..+....+++.|.++ ++++++...+
T Consensus 424 G~G~~G~~la~~L~~~--g~~vvvId~d 449 (558)
T PRK10669 424 GYGRVGSLLGEKLLAA--GIPLVVIETS 449 (558)
T ss_pred CCChHHHHHHHHHHHC--CCCEEEEECC
Confidence 6778889999999998 5677777665
No 420
>KOG3332|consensus
Probab=27.09 E-value=4.2e+02 Score=23.46 Aligned_cols=38 Identities=8% Similarity=0.047 Sum_probs=24.8
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeC
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTG 93 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~ 93 (488)
.||+++..... -+.....+.+.+|.+.++.+.++.+++
T Consensus 38 sriLLviAhpd---DE~mFFsPtI~~L~~~~~~v~iLClSn 75 (247)
T KOG3332|consen 38 SRILLVIAHPD---DESMFFSPTILYLTSGACNVHILCLSN 75 (247)
T ss_pred ceEEEEEeccC---ccccchhhHHHHHhcCCccEEEEEecC
Confidence 45665543222 355778889999998766777776654
No 421
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=27.08 E-value=3.9e+02 Score=22.63 Aligned_cols=20 Identities=10% Similarity=0.172 Sum_probs=14.1
Q ss_pred cceecC--CHHHHHHHHHHHHc
Q psy15555 425 NGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 425 ~g~~~~--~~~~l~~~i~~ll~ 444 (488)
+.+.+. +.+++.+.+.++++
T Consensus 148 a~~s~~~~~~~~~~~~l~~li~ 169 (171)
T PRK00945 148 ADMSFPNLSKEEYLEYLDELID 169 (171)
T ss_pred CceecCCCCHHHHHHHHHHHHh
Confidence 344443 78888888888875
No 422
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=26.98 E-value=1.4e+02 Score=27.57 Aligned_cols=33 Identities=9% Similarity=0.075 Sum_probs=21.3
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
|||+++. |....-..+.+.|.++ +++++.++..
T Consensus 1 MriLI~G-------asG~lG~~l~~~l~~~--~~~v~~~~r~ 33 (286)
T PF04321_consen 1 MRILITG-------ASGFLGSALARALKER--GYEVIATSRS 33 (286)
T ss_dssp EEEEEET-------TTSHHHHHHHHHHTTT--SEEEEEESTT
T ss_pred CEEEEEC-------CCCHHHHHHHHHHhhC--CCEEEEeCch
Confidence 7888752 2334556777888876 6777766433
No 423
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=26.95 E-value=3.4e+02 Score=21.99 Aligned_cols=71 Identities=13% Similarity=0.060 Sum_probs=47.9
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcE
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIM 403 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~Pv 403 (488)
..-+..++|+++ ...+.+..++.+.|. .|.....-+ .++.+..+.||+++...... +..--|-+.-|.-|
T Consensus 27 ~gk~v~VvGrs~-----~vG~pla~lL~~~ga--tV~~~~~~t-~~l~~~v~~ADIVvsAtg~~--~~i~~~~ikpGa~V 96 (140)
T cd05212 27 DGKKVLVVGRSG-----IVGAPLQCLLQRDGA--TVYSCDWKT-IQLQSKVHDADVVVVGSPKP--EKVPTEWIKPGATV 96 (140)
T ss_pred CCCEEEEECCCc-----hHHHHHHHHHHHCCC--EEEEeCCCC-cCHHHHHhhCCEEEEecCCC--CccCHHHcCCCCEE
Confidence 466889999986 444667777766653 466665433 46888999999888765443 33445666677776
Q ss_pred E
Q psy15555 404 I 404 (488)
Q Consensus 404 I 404 (488)
|
T Consensus 97 i 97 (140)
T cd05212 97 I 97 (140)
T ss_pred E
Confidence 6
No 424
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=26.83 E-value=5.5e+02 Score=25.44 Aligned_cols=96 Identities=15% Similarity=0.194 Sum_probs=54.2
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEe
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAH 406 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~ 406 (488)
...+.|.... .-..+++.+.++.|++.++.+.|. +.+|+...=++.-.++..++. +...-+...+|+|.+..
T Consensus 167 ~vnl~G~~~~----gd~~eik~lL~~~Gi~~~~~~~G~-~~~ei~~a~~A~~~i~l~~~~---~~a~~l~~~~GvP~~~~ 238 (422)
T TIGR02015 167 TLVLLGEIFP----VDAMVIGGVLQPIGVESGPTVPGR-DWRELYAALDSSAVAVLHPFY---EATARLFEAAGVKIVGS 238 (422)
T ss_pred ceeeecCCCc----ccHHHHHHHHHHcCCCeEEecCCC-CHHHHHhhhcCeEEEEeCccc---hHHHHHHHHcCCceecc
Confidence 4455664421 123788899999999877777665 677777665544433333322 22222223789997542
Q ss_pred CCCCCccceeccCCCccccceecCCHHHHHHHHHHHHccCHH
Q psy15555 407 KSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILHLSQD 448 (488)
Q Consensus 407 ~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~~~~~ 448 (488)
..-| .++.+++...+.+++..+++
T Consensus 239 ~PiG------------------~~~Td~fL~~la~~~G~~~~ 262 (422)
T TIGR02015 239 APVG------------------ANGTGEWLERIGEALDLDPD 262 (422)
T ss_pred CCCC------------------hHHHHHHHHHHHHHhCcCHH
Confidence 2112 22456677777777663433
No 425
>PRK05331 putative phosphate acyltransferase; Provisional
Probab=26.80 E-value=2.5e+02 Score=26.83 Aligned_cols=57 Identities=11% Similarity=0.161 Sum_probs=41.5
Q ss_pred EeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCC-CcEEEecC
Q psy15555 294 SVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLE-NNVEFKVN 364 (488)
Q Consensus 294 ~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~ 364 (488)
.+=-+..+.++..++++..+..++. +.+.++++|+. +++++.+++.++. +++.++..
T Consensus 5 avDamGgD~~p~~vl~aa~~a~~~~-----~~~~~iLvG~~---------~~I~~~l~~~~~~~~~~~Iv~~ 62 (334)
T PRK05331 5 AIDAMGGDFGPEVVVPGALQALKEH-----PDLEIILVGDE---------EKIKPLLAKKPDLKERIEIVHA 62 (334)
T ss_pred EEEcCCCccCHHHHHHHHHHHHhcC-----CCeEEEEEeCH---------HHHHHHHHhcCCCcCCcEEEeC
Confidence 3445667889999999998888775 57999999975 6677777776642 34555543
No 426
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=26.51 E-value=5.9e+02 Score=26.43 Aligned_cols=110 Identities=8% Similarity=-0.032 Sum_probs=55.0
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCc-------------EEEec---CCChHHHHHHHHhCcE-EEEcCCCCcC
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENN-------------VEFKV---NLPYEDMKKEFSEGLI-GLHAMWNEHF 389 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~-------------v~~~g---~~~~~el~~~~~~ad~-~v~~s~~e~~ 389 (488)
-++++|.+-... .-.+++.++++.++.+-- =.++| .........++..||+ ++.++.....
T Consensus 209 Pvil~G~g~~~~--~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aD~vl~vG~~~~~~ 286 (572)
T PRK08979 209 PVLYVGGGAIIS--GADKQILQLAEKLNLPVVSTLMGLGAFPGTHKNSLGMLGMHGRYEANMAMHNADLIFGIGVRFDDR 286 (572)
T ss_pred CEEEECCCcccc--ChHHHHHHHHHHhCCCEEEcccccccCCCCCcccccCCccCCCHHHHHHHHhCCEEEEEcCCCCcc
Confidence 578889875322 334789999999988511 11222 2233466778999994 4444432221
Q ss_pred CccHHHHHHcCCcEEEeCCCCCccceeccCCCcccc-ceecCCHHHHHHHHHHHHc
Q psy15555 390 GIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRN-GFLACDEVEYAQTIKLILH 444 (488)
Q Consensus 390 g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~-g~~~~~~~~l~~~i~~ll~ 444 (488)
...-.....-+..+|.-+.... ++-... .. --++.|..++.+++.+.+.
T Consensus 287 ~~~~~~~~~~~~~~i~id~d~~--~i~~~~----~~~~~i~~D~~~~l~~L~~~l~ 336 (572)
T PRK08979 287 TTNNLEKYCPNATILHIDIDPS--SISKTV----RVDIPIVGSADKVLDSMLALLD 336 (572)
T ss_pred ccCchhhcCCCCeEEEEECCHH--HhCCcc----CCceEEecCHHHHHHHHHHhhh
Confidence 1111111222344655544211 222111 11 1223477777777766554
No 427
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=26.37 E-value=3.4e+02 Score=24.33 Aligned_cols=19 Identities=16% Similarity=0.205 Sum_probs=13.8
Q ss_pred HHHHHHhhhcCCcEEEecC
Q psy15555 149 ILGVEALLSFQPDIYIDTM 167 (488)
Q Consensus 149 ~~~~~~l~~~~pDiii~~~ 167 (488)
..+.+++++.+||+++.+.
T Consensus 99 ~~L~~ii~~~~P~~V~t~~ 117 (237)
T COG2120 99 GALVAIIRRLRPDVVFTPY 117 (237)
T ss_pred HHHHHHHHHhCCCEEEecC
Confidence 3466788899999776553
No 428
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=26.18 E-value=1.5e+02 Score=25.78 Aligned_cols=51 Identities=14% Similarity=0.192 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcC-CccH
Q psy15555 343 VKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHF-GIGI 393 (488)
Q Consensus 343 ~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~-g~~~ 393 (488)
..++.+.+++.|....+.+.+..|-+.+..++...|.++.-|-..|| |...
T Consensus 94 ~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~f 145 (201)
T PF00834_consen 94 PKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQKF 145 (201)
T ss_dssp HHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB--
T ss_pred HHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCcccc
Confidence 46677888888888888888888889999999999954443433444 4443
No 429
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.11 E-value=5.1e+02 Score=23.72 Aligned_cols=52 Identities=10% Similarity=0.098 Sum_probs=34.9
Q ss_pred HhCcEEEEcCCCCcCCccHHHHHH------cCCcEEEeCCCCCccceeccCCCccccceecC-CHHHHHHHHHHHHc
Q psy15555 375 SEGLIGLHAMWNEHFGIGIVECMA------AGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKLILH 444 (488)
Q Consensus 375 ~~ad~~v~~s~~e~~g~~~lEa~a------~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~ 444 (488)
..+|+++.- |+--+++.|+. .++|++.-+.| .-|++.+ +++++.+.+.++++
T Consensus 34 ~~~Dlvi~i----GGDGT~L~a~~~~~~~~~~iPilGIN~G--------------~lGFL~~~~~~~~~~~l~~i~~ 92 (265)
T PRK04885 34 KNPDIVISV----GGDGTLLSAFHRYENQLDKVRFVGVHTG--------------HLGFYTDWRPFEVDKLVIALAK 92 (265)
T ss_pred cCCCEEEEE----CCcHHHHHHHHHhcccCCCCeEEEEeCC--------------CceecccCCHHHHHHHHHHHHc
Confidence 357844431 22336666653 48899887654 2378877 88999999999887
No 430
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=26.07 E-value=4.1e+02 Score=22.52 Aligned_cols=65 Identities=15% Similarity=0.261 Sum_probs=40.7
Q ss_pred CeEEEEeeccCC-CCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCC-------CcHHHHHHHHHHHHhcCCCCcEE
Q psy15555 289 PVKIISVAQFRP-EKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNE-------EDEVCVKDMQDLCKHLSLENNVE 360 (488)
Q Consensus 289 ~~~i~~~g~~~~-~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~-------~~~~~~~~l~~~~~~~~l~~~v~ 360 (488)
..+-+++||+.| ++|+..+++.. .++. |-.++++|+.... ...|+..-+++..++.|+..++.
T Consensus 3 ~~rgv~~GRFqP~H~GHl~vi~~a---l~~v------DeliI~iGSa~~~~t~~nPfTagER~~mi~~~L~~~~~~~r~~ 73 (172)
T COG1056 3 MKRGVYFGRFQPLHTGHLYVIKRA---LSKV------DELIIVIGSAQESHTLKNPFTAGERIPMIRDRLREAGLDLRVY 73 (172)
T ss_pred ceEEEEEeccCCccHhHHHHHHHH---HHhC------CEEEEEEccCcccccccCCCCccchhHHHHHHHHhcCCCceEE
Confidence 456789999986 46665554433 3332 4456778874322 24477788888888888755444
Q ss_pred Ee
Q psy15555 361 FK 362 (488)
Q Consensus 361 ~~ 362 (488)
+.
T Consensus 74 ~~ 75 (172)
T COG1056 74 LR 75 (172)
T ss_pred EE
Confidence 43
No 431
>PRK06988 putative formyltransferase; Provisional
Probab=25.86 E-value=3.8e+02 Score=25.28 Aligned_cols=14 Identities=7% Similarity=-0.014 Sum_probs=8.2
Q ss_pred ccHHHHHHcCCcEE
Q psy15555 391 IGIVECMAAGLIMI 404 (488)
Q Consensus 391 ~~~lEa~a~G~PvI 404 (488)
..+..|+..|-+..
T Consensus 117 ~pi~~ai~~g~~~t 130 (312)
T PRK06988 117 VPVNWAVLNGETET 130 (312)
T ss_pred CHHHHHHHcCCCce
Confidence 44556666666543
No 432
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=25.75 E-value=5.7e+02 Score=24.09 Aligned_cols=119 Identities=11% Similarity=0.123 Sum_probs=75.1
Q ss_pred CeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChH
Q psy15555 289 PVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYE 368 (488)
Q Consensus 289 ~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 368 (488)
..-|...|-.-.+.+.+.+++-+.++.+.. ++ +++.|+-|..-..+++.++.+.+++.|. .+.=..+.+
T Consensus 101 ~Tein~~Gp~is~~~~~~~l~~~~~~l~~~------d~-VvlsGSlP~g~~~d~y~~li~~~~~~g~----~vilD~Sg~ 169 (310)
T COG1105 101 ETEINFPGPEISEAELEQFLEQLKALLESD------DI-VVLSGSLPPGVPPDAYAELIRILRQQGA----KVILDTSGE 169 (310)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHhcccC------CE-EEEeCCCCCCCCHHHHHHHHHHHHhcCC----eEEEECChH
Confidence 455666676666777888888888755442 44 8899988877777888999999888753 333334667
Q ss_pred HHHHHHHhCcEEEEcCCCC---cCCcc------HHHH----HHcCCcEEEeCCCCCccceeccC
Q psy15555 369 DMKKEFSEGLIGLHAMWNE---HFGIG------IVEC----MAAGLIMIAHKSGGPKMDIVIED 419 (488)
Q Consensus 369 el~~~~~~ad~~v~~s~~e---~~g~~------~lEa----~a~G~PvI~~~~~~~~~eiv~~~ 419 (488)
.+.+.+..--.+|=|...| -+|.. ++++ ...|+..|.-..++-- .+..+.
T Consensus 170 ~L~~~L~~~P~lIKPN~~EL~~~~g~~~~~~~d~i~~a~~l~~~g~~~ViVSlG~~G-al~~~~ 232 (310)
T COG1105 170 ALLAALEAKPWLIKPNREELEALFGRELTTLEDVIKAARELLAEGIENVIVSLGADG-ALLVTA 232 (310)
T ss_pred HHHHHHccCCcEEecCHHHHHHHhCCCCCChHHHHHHHHHHHHCCCCEEEEEecCcc-cEEEcc
Confidence 7888888776666665433 12221 2222 4457776665444443 444444
No 433
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=25.71 E-value=97 Score=23.87 Aligned_cols=38 Identities=16% Similarity=-0.034 Sum_probs=23.9
Q ss_pred HHHHHhCcEEEEcCCC-CcCCccHHH---HHHcCCcEEEeCC
Q psy15555 371 KKEFSEGLIGLHAMWN-EHFGIGIVE---CMAAGLIMIAHKS 408 (488)
Q Consensus 371 ~~~~~~ad~~v~~s~~-e~~g~~~lE---a~a~G~PvI~~~~ 408 (488)
.+.+..||++|..-.. ..-.-+.+| |.+.|+||++...
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~ 97 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTE 97 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEc
Confidence 4678899966543322 122235555 7888999999654
No 434
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=25.67 E-value=5.3e+02 Score=23.68 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=17.4
Q ss_pred HHHHHHHHHhCCCeeEEEEeCCC
Q psy15555 73 WTAVLALHQKYPDYKIYIYTGDV 95 (488)
Q Consensus 73 ~~l~~~L~~~~~~~~v~~~~~~~ 95 (488)
..+++.|+++ +++++++..+.
T Consensus 20 ~~~A~~lA~~--g~~liLvaR~~ 40 (265)
T COG0300 20 AELAKQLARR--GYNLILVARRE 40 (265)
T ss_pred HHHHHHHHHC--CCEEEEEeCcH
Confidence 6778999998 78888888873
No 435
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=25.61 E-value=1.2e+02 Score=29.24 Aligned_cols=80 Identities=11% Similarity=0.027 Sum_probs=43.6
Q ss_pred HHHHHHHHhCcEEEEc--CCCCcCCc-cHHHHHHcCCcEEEeC-CCCCccceeccCCCcccccee-c---CCHHHHHHHH
Q psy15555 368 EDMKKEFSEGLIGLHA--MWNEHFGI-GIVECMAAGLIMIAHK-SGGPKMDIVIEDPETCRNGFL-A---CDEVEYAQTI 439 (488)
Q Consensus 368 ~el~~~~~~ad~~v~~--s~~e~~g~-~~lEa~a~G~PvI~~~-~~~~~~eiv~~~~~~~~~g~~-~---~~~~~l~~~i 439 (488)
++...+++.....+.. |..+++=. ++.+|+..|+-.|.-. .+...++++-.+ .++ + +++++|++.|
T Consensus 219 ~~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~~~~P~~------SfI~~~df~s~~~La~yl 292 (349)
T PF00852_consen 219 DCKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYEEFAPPN------SFIHVDDFKSPKELADYL 292 (349)
T ss_dssp S-HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHHHHS-GG------GSEEGGGSSSHHHHHHHH
T ss_pred ccccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEecccccCCCCC------CccchhcCCCHHHHHHHH
Confidence 4466666666644431 22222222 6789999998666543 222333444332 343 3 3899999999
Q ss_pred HHHHccCHHHHHHHH
Q psy15555 440 KLILHLSQDTKTRIS 454 (488)
Q Consensus 440 ~~ll~~~~~~~~~~~ 454 (488)
..+.+ |++++.+.-
T Consensus 293 ~~l~~-n~~~Y~~yf 306 (349)
T PF00852_consen 293 KYLDK-NDELYNKYF 306 (349)
T ss_dssp HHHHT--HHHHH---
T ss_pred HHHhc-CHHHHhhhc
Confidence 99998 888777543
No 436
>PRK14057 epimerase; Provisional
Probab=25.52 E-value=2.1e+02 Score=26.01 Aligned_cols=44 Identities=7% Similarity=-0.121 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHH-hCcEEEEcCC
Q psy15555 342 CVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS-EGLIGLHAMW 385 (488)
Q Consensus 342 ~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~-~ad~~v~~s~ 385 (488)
+..+++++.++.++.-.+..=|.++.+.+..+.. .+|++|.+|.
T Consensus 179 KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~GSa 223 (254)
T PRK14057 179 RVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSA 223 (254)
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChH
Confidence 3345555555656554577778888887877765 4888888873
No 437
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.44 E-value=3.7e+02 Score=27.95 Aligned_cols=113 Identities=16% Similarity=0.133 Sum_probs=61.0
Q ss_pred HHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHH----------HHH
Q psy15555 305 PLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMK----------KEF 374 (488)
Q Consensus 305 ~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~----------~~~ 374 (488)
..+++.+++.... +..++.|+.........+...++.+.+++.++. +.+.... ...+. .-.
T Consensus 276 ~~l~~~l~~~w~~------~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~--v~~~~~~-~~~~~~~~~~~~~~~~~~ 346 (569)
T PRK14076 276 KKLVGIFGNKWRI------KPTKFGIVSRIDNEEAINLALKIIKYLDSKGIP--YELESFL-YNKLKNRLNEECNLIDDI 346 (569)
T ss_pred HHHHHhhhhhccc------CCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCE--EEEechh-hhhhcccccccccccccc
Confidence 4455555443333 345677777654333334455666666665542 3222110 01110 012
Q ss_pred HhCcEEEEcCCCCcCCccHHHHHH----cCCcEEEeCCCCCccceeccCCCccccceecC-CHHHHHHHHHHHHc
Q psy15555 375 SEGLIGLHAMWNEHFGIGIVECMA----AGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKLILH 444 (488)
Q Consensus 375 ~~ad~~v~~s~~e~~g~~~lEa~a----~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~ 444 (488)
..+|++|.- |+--+++.|+. .++||+.-+.|. -|++.+ +++++.+++.++++
T Consensus 347 ~~~dlvi~l----GGDGT~L~aa~~~~~~~~PilGin~G~--------------lGFL~~~~~~~~~~~l~~~~~ 403 (569)
T PRK14076 347 EEISHIISI----GGDGTVLRASKLVNGEEIPIICINMGT--------------VGFLTEFSKEEIFKAIDSIIS 403 (569)
T ss_pred cCCCEEEEE----CCcHHHHHHHHHhcCCCCCEEEEcCCC--------------CCcCcccCHHHHHHHHHHHHc
Confidence 246744431 22235665544 478998877642 378877 88999999999987
No 438
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=25.33 E-value=63 Score=26.40 Aligned_cols=40 Identities=3% Similarity=-0.020 Sum_probs=24.8
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
|||+++.......|-....+..+++.+.+. ++++-++.-.
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~--g~e~~~i~l~ 40 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEA--GAEVEVIDLA 40 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHT--TEEEEEEECT
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHc--CCEEEEEecc
Confidence 899988766555554445566666677666 5666665443
No 439
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=25.29 E-value=2.9e+02 Score=25.05 Aligned_cols=23 Identities=4% Similarity=0.105 Sum_probs=16.1
Q ss_pred HHHHHHHHHhCCCeeEEEEeCCC
Q psy15555 73 WTAVLALHQKYPDYKIYIYTGDV 95 (488)
Q Consensus 73 ~~l~~~L~~~~~~~~v~~~~~~~ 95 (488)
..+.+++.+..|+.+++.+..+.
T Consensus 11 ltv~~~l~~~~p~~~~iy~~D~~ 33 (251)
T TIGR00067 11 LSVLKEIRKQLPKEHYIYVGDTK 33 (251)
T ss_pred HHHHHHHHHHCCCCCEEEEecCC
Confidence 44558888888888876666553
No 440
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=25.22 E-value=1.6e+02 Score=22.26 Aligned_cols=37 Identities=11% Similarity=0.274 Sum_probs=24.2
Q ss_pred HHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhc
Q psy15555 308 LRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHL 353 (488)
Q Consensus 308 l~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~ 353 (488)
...+.++.+.+ |+.+++++|+.-+.+ . +-..+.+++.
T Consensus 52 ~~~i~~i~~~f-----P~~kfiLIGDsgq~D-p---eiY~~ia~~~ 88 (100)
T PF09949_consen 52 RDNIERILRDF-----PERKFILIGDSGQHD-P---EIYAEIARRF 88 (100)
T ss_pred HHHHHHHHHHC-----CCCcEEEEeeCCCcC-H---HHHHHHHHHC
Confidence 45566666777 899999999875443 2 3344555554
No 441
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=25.16 E-value=5.2e+02 Score=23.44 Aligned_cols=92 Identities=13% Similarity=0.078 Sum_probs=48.2
Q ss_pred CChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCC-cEEEe-cCCChHHHHHHHHhCcE
Q psy15555 302 KDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLEN-NVEFK-VNLPYEDMKKEFSEGLI 379 (488)
Q Consensus 302 k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~-~v~~~-g~~~~~el~~~~~~ad~ 379 (488)
|-.+.+..|.+-+..-. ..-.++++|..+ .....+++.++..|-.. +=.|+ |..+.. ....+..=|+
T Consensus 53 kT~~~L~~Aa~~i~~i~-----~~~~Il~Vstr~-----~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~-~~~~f~~P~l 121 (249)
T PTZ00254 53 KTWEKLKLAARVIAAIE-----NPADVVVVSSRP-----YGQRAVLKFAQYTGASAIAGRFTPGTFTNQ-IQKKFMEPRL 121 (249)
T ss_pred HHHHHHHHHHHHHHHHh-----CCCcEEEEEcCH-----HHHHHHHHHHHHhCCeEECCcccCCCCCCc-cccccCCCCE
Confidence 44455555555443321 234567788765 22355666666554210 00233 333322 2233455564
Q ss_pred EEEcCCCCcCCccHHHHHHcCCcEEE
Q psy15555 380 GLHAMWNEHFGIGIVECMAAGLIMIA 405 (488)
Q Consensus 380 ~v~~s~~e~~g~~~lEa~a~G~PvI~ 405 (488)
+|... ...-...+.||...|+|||+
T Consensus 122 lIV~D-p~~d~qAI~EA~~lnIPvIa 146 (249)
T PTZ00254 122 LIVTD-PRTDHQAIREASYVNIPVIA 146 (249)
T ss_pred EEEeC-CCcchHHHHHHHHhCCCEEE
Confidence 44332 12225689999999999999
No 442
>KOG0368|consensus
Probab=25.07 E-value=5.3e+02 Score=30.15 Aligned_cols=151 Identities=12% Similarity=0.132 Sum_probs=84.2
Q ss_pred HHHHHHHHhccC--CceEEEcCCCCchhhhcc-C----CCC-CCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhcc
Q psy15555 252 TEEHVIQLWNCQ--LKTYKLYPPCDTEDLKKI-T----HSK-TDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELW 323 (488)
Q Consensus 252 ~~~~~~~~~~~~--~k~~vi~~~~d~~~~~~~-~----~~~-~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~ 323 (488)
.++....++|.. +++-+..||+..-+.-.. + +.. .++-..++.+.+-+ + +++-++..+-
T Consensus 41 v~efvk~~gG~rvI~kILIAnNGiAAvK~irSiRkWayetF~ner~I~FV~MaTpd---d----l~anaeyIrm------ 107 (2196)
T KOG0368|consen 41 VAEFVKRLGGHRVIKRILIANNGIAAVKCIRSIRKWAYETFGNERAIQFVCMATPD---D----LRANAEYIRM------ 107 (2196)
T ss_pred HHHHHHHhcCCceeEEEEEecccHHHHHHHHHHHHHHHHHhCCcceEEEEEecCHH---H----HHhhHHHhhh------
Confidence 455555555533 267777778653322111 1 112 23334455555422 2 3333333322
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCC---ChHHHHHHHHhCc-EEEEcCCCC--cCCc---cHH
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNL---PYEDMKKEFSEGL-IGLHAMWNE--HFGI---GIV 394 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~---~~~el~~~~~~ad-~~v~~s~~e--~~g~---~~l 394 (488)
.| +++-+++|.+..+-.-.+.+.+.+++..+. -++.|+= ...++++.++... +|++|+... ..|= +-+
T Consensus 108 AD-qyvevPgGtNnNNyANVdlIvdiAe~~~Vd--AVWaGWGHASENP~LPe~L~~~~IiFiGPP~~aM~sLGDKI~STI 184 (2196)
T KOG0368|consen 108 AD-QYVEVPGGTNNNNYANVDLIVDIAERTDVD--AVWAGWGHASENPELPERLSANGIIFIGPPASAMRALGDKIASTI 184 (2196)
T ss_pred hh-heeeCCCCCCCCCcccHHHHHHHHHhcccc--eEeecccccccCcchHHHHHhcCcEEECCchHHHHHhcchHHHHH
Confidence 22 266777776665444556777777776543 5676652 3458999999888 788887332 2232 346
Q ss_pred HHHHcCCcEEEeCCCCCccceecc
Q psy15555 395 ECMAAGLIMIAHKSGGPKMDIVIE 418 (488)
Q Consensus 395 Ea~a~G~PvI~~~~~~~~~eiv~~ 418 (488)
=|.++|+|.+.-.-.+...+-+++
T Consensus 185 vAQsa~vPtlpWSGS~v~~~~~~~ 208 (2196)
T KOG0368|consen 185 IAQSAGVPTLPWSGSGVKVEHIED 208 (2196)
T ss_pred HHHhcCCCcccccCCcceeeeecc
Confidence 789999999986655554343433
No 443
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=25.02 E-value=3.6e+02 Score=25.63 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=19.0
Q ss_pred CceehHHHHHHHHHHhCCCeeEEEEeCCC
Q psy15555 67 GGERVLWTAVLALHQKYPDYKIYIYTGDV 95 (488)
Q Consensus 67 G~e~~~~~l~~~L~~~~~~~~v~~~~~~~ 95 (488)
|=.-.+..+++.|.++ +.++.+.+...
T Consensus 63 GKTP~v~~L~~~l~~~--g~~~~ilsRGY 89 (325)
T PRK00652 63 GKTPVVIALAEQLQAR--GLKPGVVSRGY 89 (325)
T ss_pred ChHHHHHHHHHHHHHC--CCeEEEECCCC
Confidence 3446677899999888 66777776543
No 444
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=24.89 E-value=3.8e+02 Score=22.35 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=40.2
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcE
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIM 403 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~Pv 403 (488)
..-+.+++|++..- -.-+..+..+.+ ..|+....-+ .++.+..+.||++|......++ .--|...-|..|
T Consensus 35 ~Gk~v~VvGrs~~V-----G~Pla~lL~~~~--atVt~~h~~T-~~l~~~~~~ADIVVsa~G~~~~--i~~~~ik~gavV 104 (160)
T PF02882_consen 35 EGKKVVVVGRSNIV-----GKPLAMLLLNKG--ATVTICHSKT-KNLQEITRRADIVVSAVGKPNL--IKADWIKPGAVV 104 (160)
T ss_dssp TT-EEEEE-TTTTT-----HHHHHHHHHHTT---EEEEE-TTS-SSHHHHHTTSSEEEE-SSSTT---B-GGGS-TTEEE
T ss_pred CCCEEEEECCcCCC-----ChHHHHHHHhCC--CeEEeccCCC-CcccceeeeccEEeeeeccccc--cccccccCCcEE
Confidence 35689999998532 255666666654 3465555433 6889999999998877644322 333444555444
Q ss_pred E
Q psy15555 404 I 404 (488)
Q Consensus 404 I 404 (488)
|
T Consensus 105 I 105 (160)
T PF02882_consen 105 I 105 (160)
T ss_dssp E
T ss_pred E
Confidence 4
No 445
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=24.88 E-value=4.3e+02 Score=24.21 Aligned_cols=76 Identities=8% Similarity=-0.015 Sum_probs=50.1
Q ss_pred EEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEe-cCCChHH
Q psy15555 291 KIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFK-VNLPYED 369 (488)
Q Consensus 291 ~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~-g~~~~~e 369 (488)
+++.-.+.-...|++.+++..++. .+.=+|+++-|. |..+++.+.++++|+. .|.+. +..+.+.
T Consensus 98 vlm~Y~Npi~~~Gie~F~~~~~~~----------GvdGlivpDLP~----ee~~~~~~~~~~~gi~-~I~lvaPtt~~~r 162 (265)
T COG0159 98 VLMTYYNPIFNYGIEKFLRRAKEA----------GVDGLLVPDLPP----EESDELLKAAEKHGID-PIFLVAPTTPDER 162 (265)
T ss_pred EEEEeccHHHHhhHHHHHHHHHHc----------CCCEEEeCCCCh----HHHHHHHHHHHHcCCc-EEEEeCCCCCHHH
Confidence 333333444567877666554442 567788898875 4447889999999985 45444 4457788
Q ss_pred HHHHHHhCcEEE
Q psy15555 370 MKKEFSEGLIGL 381 (488)
Q Consensus 370 l~~~~~~ad~~v 381 (488)
+..+.+.++-|+
T Consensus 163 l~~i~~~a~GFi 174 (265)
T COG0159 163 LKKIAEAASGFI 174 (265)
T ss_pred HHHHHHhCCCcE
Confidence 888888887433
No 446
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=24.79 E-value=5.4e+02 Score=23.49 Aligned_cols=120 Identities=10% Similarity=0.078 Sum_probs=68.6
Q ss_pred ChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC---CChHHHHHHHHhC--
Q psy15555 303 DHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN---LPYEDMKKEFSEG-- 377 (488)
Q Consensus 303 ~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~---~~~~el~~~~~~a-- 377 (488)
.++.+.++.+..++.+ ..+. +........+.++..++.+.+.+.|. +.|.+.+. ....++..+++..
T Consensus 112 ~~~~~~~~i~~a~~~G-----~~v~--~~~~~~~~~~~~~~~~~~~~~~~~G~-~~i~l~DT~G~~~P~~v~~lv~~l~~ 183 (268)
T cd07940 112 VLERAVEAVEYAKSHG-----LDVE--FSAEDATRTDLDFLIEVVEAAIEAGA-TTINIPDTVGYLTPEEFGELIKKLKE 183 (268)
T ss_pred HHHHHHHHHHHHHHcC-----CeEE--EeeecCCCCCHHHHHHHHHHHHHcCC-CEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 4556666666666554 3333 32222222345676777777777774 56666543 4555665555442
Q ss_pred ---c--EEEEcCCCCcCCc---cHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHH
Q psy15555 378 ---L--IGLHAMWNEHFGI---GIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLI 442 (488)
Q Consensus 378 ---d--~~v~~s~~e~~g~---~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~l 442 (488)
+ +-+.-.....+|+ +.++|+.+|+-.|-+...|.- +- .|-. ..++++..+...
T Consensus 184 ~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG-~~---------aGN~--~tE~lv~~L~~~ 244 (268)
T cd07940 184 NVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIG-ER---------AGNA--ALEEVVMALKTR 244 (268)
T ss_pred hCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeeccc-cc---------cccc--cHHHHHHHHHhc
Confidence 1 3344344566665 568999999999987776664 21 1211 456666666554
No 447
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.24 E-value=8e+02 Score=25.45 Aligned_cols=111 Identities=8% Similarity=0.054 Sum_probs=55.9
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCC-------------cEEEec---CCChHHHHHHHHhCcE-EEEcCCCCcC
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLEN-------------NVEFKV---NLPYEDMKKEFSEGLI-GLHAMWNEHF 389 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~-------------~v~~~g---~~~~~el~~~~~~ad~-~v~~s~~e~~ 389 (488)
-++++|.+.... .-.+++.+++++++.+- +=.+.| .........++..||+ ++.++.....
T Consensus 209 Pvi~~G~g~~~~--~a~~~l~~lae~~~~pv~tt~~gkg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~vG~~~~~~ 286 (574)
T PRK07979 209 PVVYVGGGAINA--ACHQQLKELVEKLNLPVVSSLMGLGAFPATHRQSLGMLGMHGTYEANMTMHNADVIFAVGVRFDDR 286 (574)
T ss_pred CEEEECCCcccc--chHHHHHHHHHHhCCCEEEccccCCCCCCCCcccccCCcCCCCHHHHHHHHhCCEEEEeCCCCccc
Confidence 478889885332 33588999999998751 112222 2233466779999994 4444432222
Q ss_pred CccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHHc
Q psy15555 390 GIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILH 444 (488)
Q Consensus 390 g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~ 444 (488)
...-.+...-...+|.-+.... ++-... . ..--++.|...+.++|...+.
T Consensus 287 ~~~~~~~~~~~~~~i~id~d~~--~i~~~~--~-~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK07979 287 TTNNLAKYCPNATVLHIDIDPT--SISKTV--T-ADIPIVGDARQVLEQMLELLS 336 (574)
T ss_pred ccCChhhcCCCCeEEEEECCHH--HhCCcc--c-CCeEEecCHHHHHHHHHHhhh
Confidence 1111122222345555544211 222111 0 112233477777777766554
No 448
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=24.13 E-value=5.4e+02 Score=23.27 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=19.3
Q ss_pred Cc-EEEEcCCCCcCCccHHHHHHcCCcEEE
Q psy15555 377 GL-IGLHAMWNEHFGIGIVECMAAGLIMIA 405 (488)
Q Consensus 377 ad-~~v~~s~~e~~g~~~lEa~a~G~PvI~ 405 (488)
=| +||.-...| -+.+.||--.|+|||+
T Consensus 157 Pd~l~ViDp~~e--~iAv~EA~klgIPVvA 184 (252)
T COG0052 157 PDVLFVIDPRKE--KIAVKEANKLGIPVVA 184 (252)
T ss_pred CCEEEEeCCcHh--HHHHHHHHHcCCCEEE
Confidence 45 344443344 4679999999999999
No 449
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=24.07 E-value=5.1e+02 Score=24.05 Aligned_cols=108 Identities=17% Similarity=0.032 Sum_probs=0.0
Q ss_pred ccccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccce
Q psy15555 50 NVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKF 129 (488)
Q Consensus 50 ~~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 129 (488)
.++|||+++.. |...-+..++++......+.+|.++.++....... .+. .+ +++..++....
T Consensus 87 ~~~~ri~vl~S------g~gsnl~al~~~~~~~~~~~~i~~visn~~~~~~l-A~~----------~g-Ip~~~~~~~~~ 148 (286)
T PRK06027 87 AERKRVVILVS------KEDHCLGDLLWRWRSGELPVEIAAVISNHDDLRSL-VER----------FG-IPFHHVPVTKE 148 (286)
T ss_pred ccCcEEEEEEc------CCCCCHHHHHHHHHcCCCCcEEEEEEEcChhHHHH-HHH----------hC-CCEEEeccCcc
Q ss_pred eeccCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhhhhhCCCeeEEEEe
Q psy15555 130 VEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIH 189 (488)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h 189 (488)
.....- ....+.++..+||+++... |...++.--...-..-++.+|
T Consensus 149 ~~~~~~-------------~~~~~~l~~~~~Dlivlag-y~~il~~~~l~~~~~~iiNiH 194 (286)
T PRK06027 149 TKAEAE-------------ARLLELIDEYQPDLVVLAR-YMQILSPDFVARFPGRIINIH 194 (286)
T ss_pred ccchhH-------------HHHHHHHHHhCCCEEEEec-chhhcCHHHHhhccCCceecC
No 450
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=23.90 E-value=4.9e+02 Score=26.83 Aligned_cols=38 Identities=16% Similarity=-0.001 Sum_probs=29.1
Q ss_pred HHHHHHHHhC--cEEEEcCC-CCcCCccHHHHHHc--CCcEEE
Q psy15555 368 EDMKKEFSEG--LIGLHAMW-NEHFGIGIVECMAA--GLIMIA 405 (488)
Q Consensus 368 ~el~~~~~~a--d~~v~~s~-~e~~g~~~lEa~a~--G~PvI~ 405 (488)
..+.+..+.+ |++|+.|. ...|.-.++++|+. -.|||.
T Consensus 371 ~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIF 413 (559)
T PTZ00317 371 KTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIF 413 (559)
T ss_pred CCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 4688888888 89999885 34577778888885 667776
No 451
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=23.84 E-value=2.3e+02 Score=18.88 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15555 13 LVFLFYSILALLLLSIIVLPLSVL 36 (488)
Q Consensus 13 ~~~~~y~~~~~~~~~~~~~p~~~~ 36 (488)
+.-++|..+...++.++.+.+-++
T Consensus 3 i~~~Iy~~~Vi~l~vl~~~~Ftl~ 26 (58)
T PF13314_consen 3 IGDLIYYILVIILIVLFGASFTLF 26 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567665555444444444444
No 452
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=23.59 E-value=5.3e+02 Score=22.96 Aligned_cols=115 Identities=14% Similarity=0.054 Sum_probs=58.4
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC-CChHHHHHHHHhCcEEEEcCCCCcCCccHH-HHHHcCCc
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN-LPYEDMKKEFSEGLIGLHAMWNEHFGIGIV-ECMAAGLI 402 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-~~~~el~~~~~~ad~~v~~s~~e~~g~~~l-Ea~a~G~P 402 (488)
..+++++.... .++++++++. ..+.+... ...+ .+..+++++..+..+.....+. +|-+.|++
T Consensus 48 gA~VtVVap~i-------~~el~~l~~~----~~i~~~~r~~~~~----dl~g~~LViaATdD~~vN~~I~~~a~~~~~l 112 (223)
T PRK05562 48 GCYVYILSKKF-------SKEFLDLKKY----GNLKLIKGNYDKE----FIKDKHLIVIATDDEKLNNKIRKHCDRLYKL 112 (223)
T ss_pred CCEEEEEcCCC-------CHHHHHHHhC----CCEEEEeCCCChH----HhCCCcEEEECCCCHHHHHHHHHHHHHcCCe
Confidence 45666665432 1556666543 34666543 2222 3466776666554444444444 45566999
Q ss_pred EEEeCCCCCc----cceeccCCCccccceec--C----C---HHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q psy15555 403 MIAHKSGGPK----MDIVIEDPETCRNGFLA--C----D---EVEYAQTIKLILHLSQDTKTRISQNAVSSV 461 (488)
Q Consensus 403 vI~~~~~~~~----~eiv~~~~~~~~~g~~~--~----~---~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~ 461 (488)
|.+.+..... ..++..+ ++.+ . + ...+.+.|++++. +-+...+.....|+.+
T Consensus 113 vn~vd~p~~~dFi~PAiv~rg------~l~IaIST~G~sP~lar~lR~~ie~~l~-~~~~l~~~l~~~R~~v 177 (223)
T PRK05562 113 YIDCSDYKKGLCIIPYQRSTK------NFVFALNTKGGSPKTSVFIGEKVKNFLK-KYDDFIEYVTKIRNKA 177 (223)
T ss_pred EEEcCCcccCeEEeeeEEecC------CEEEEEECCCcCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9887654332 1233333 2221 1 2 3456666666664 4444444445555555
No 453
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=23.40 E-value=5.9e+02 Score=23.47 Aligned_cols=34 Identities=6% Similarity=-0.100 Sum_probs=19.2
Q ss_pred hCcE-EEEcCCCCcCCccHHHHHHcCCcEEEeCCC
Q psy15555 376 EGLI-GLHAMWNEHFGIGIVECMAAGLIMIAHKSG 409 (488)
Q Consensus 376 ~ad~-~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~ 409 (488)
.+|. ++.+...+...-.+-++...|+|||+.+..
T Consensus 57 ~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~ 91 (303)
T cd01539 57 GVDLLAVNLVDPTAAQTVINKAKQKNIPVIFFNRE 91 (303)
T ss_pred CCCEEEEecCchhhHHHHHHHHHHCCCCEEEeCCC
Confidence 4664 444432222222345667789999998753
No 454
>PF05141 DIT1_PvcA: Pyoverdine/dityrosine biosynthesis protein; InterPro: IPR007817 This entry is found in DIT1, a protein is involved in the synthesis of dityrosine []. Dityrosine is a sporulation-specific component of the Saccharomyces cerevisiae ascospore wall that is essential for the resistance of the spores to adverse environmental conditions. Q9I1L5 from SWISSPROT is involved in the biosynthesis of pyoverdine [].; PDB: 3E59_C.
Probab=23.31 E-value=1.2e+02 Score=27.92 Aligned_cols=66 Identities=23% Similarity=0.256 Sum_probs=41.6
Q ss_pred CCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecC---------CCCCcHHHHHHHHHHHHhcCCCCcEEEecCC
Q psy15555 299 RPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGST---------RNEEDEVCVKDMQDLCKHLSLENNVEFKVNL 365 (488)
Q Consensus 299 ~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~---------~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 365 (488)
.|.++.+..|+-+..+.+....-..|.++++|+-+| ++.+-.+|.++|++++.+.++. +|.|.+-.
T Consensus 33 lPD~gEelaL~~L~~lc~~I~~vY~PGa~v~I~SDG~Vf~DllgV~D~~v~~Y~~~Lr~l~~~~~~~-~I~f~~l~ 107 (278)
T PF05141_consen 33 LPDKGEELALRRLNGLCQAIEAVYPPGAKVTIISDGHVFNDLLGVPDEEVWAYGEALRELAEEKGLD-HIKFFRLE 107 (278)
T ss_dssp S--HHHHHHHHHHHHHHHHHHHHSTT-EEEEEE--HHHHGGGTT--HHHHHHHHHHHHHHHHHCT-T-TEEEE-GG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEecCcEeccccCCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCHH
Confidence 467888777777666665543333489999999876 3333446788999999999965 58887763
No 455
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=23.25 E-value=5.3e+02 Score=24.28 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=21.9
Q ss_pred ccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCC
Q psy15555 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDV 95 (488)
Q Consensus 52 ~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~ 95 (488)
.|||+|+ |.........++|.+.+ ++++.+.+.+
T Consensus 1 ~mkivF~--------GTp~fa~~~L~~L~~~~--~eivaV~Tqp 34 (307)
T COG0223 1 MMRIVFF--------GTPEFAVPSLEALIEAG--HEIVAVVTQP 34 (307)
T ss_pred CcEEEEE--------cCchhhHHHHHHHHhCC--CceEEEEeCC
Confidence 4788886 45556667778888864 5555444443
No 456
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=23.23 E-value=5.5e+02 Score=24.37 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=22.5
Q ss_pred HHHHHHHHhCcEEE-E-cCCCCcCCc---cHHHHHHcCCcEE
Q psy15555 368 EDMKKEFSEGLIGL-H-AMWNEHFGI---GIVECMAAGLIMI 404 (488)
Q Consensus 368 ~el~~~~~~ad~~v-~-~s~~e~~g~---~~lEa~a~G~PvI 404 (488)
+++.++++.||+++ + |...|+-|+ .-+..|--|.-.|
T Consensus 189 ~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailI 230 (324)
T COG0111 189 DSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILI 230 (324)
T ss_pred ccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEE
Confidence 56899999999544 3 335565554 3455555555333
No 457
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=23.08 E-value=4.8e+02 Score=22.30 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=22.1
Q ss_pred CeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEec
Q psy15555 289 PVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGS 333 (488)
Q Consensus 289 ~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~ 333 (488)
..++.|+|.--.+- .+.++...+++++.. --+.++..|.
T Consensus 108 qriVaFvgSpi~es-edeLirlak~lkknn-----VAidii~fGE 146 (243)
T COG5148 108 QRIVAFVGSPIQES-EDELIRLAKQLKKNN-----VAIDIIFFGE 146 (243)
T ss_pred eEEEEEecCccccc-HHHHHHHHHHHHhcC-----eeEEEEehhh
Confidence 45666777544333 366677777776653 3445555554
No 458
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=23.08 E-value=5.7e+02 Score=24.09 Aligned_cols=14 Identities=14% Similarity=0.014 Sum_probs=7.6
Q ss_pred ccHHHHHHcCCcEE
Q psy15555 391 IGIVECMAAGLIMI 404 (488)
Q Consensus 391 ~~~lEa~a~G~PvI 404 (488)
..+.-|+..|-...
T Consensus 118 ~pi~wai~~G~~~t 131 (313)
T TIGR00460 118 APIQRAILNGDKKT 131 (313)
T ss_pred cHHHHHHHCCCCeE
Confidence 34555666665543
No 459
>KOG0259|consensus
Probab=23.00 E-value=7.1e+02 Score=24.25 Aligned_cols=151 Identities=19% Similarity=0.159 Sum_probs=78.0
Q ss_pred CCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCC--CcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh
Q psy15555 299 RPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNE--EDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE 376 (488)
Q Consensus 299 ~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~--~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ 376 (488)
-++|+.+.=++.++.+.++. --+.+++-+..|-. .+.+..+++.+.++++|+ .++.+.+
T Consensus 180 LPe~~weIDL~~veal~DEN-----T~AivviNP~NPcGnVys~~HL~kiae~A~klgi---~vIaDEV----------- 240 (447)
T KOG0259|consen 180 LPEKDWEIDLDGVEALADEN-----TVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGI---MVIADEV----------- 240 (447)
T ss_pred cCcccceechHHHHHhhccC-----eeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCC---eEEehhh-----------
Confidence 47788877788888887653 22334444444433 244667788888888876 2333332
Q ss_pred CcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC-CHH------HHHHHHHHHHccCHHH
Q psy15555 377 GLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEV------EYAQTIKLILHLSQDT 449 (488)
Q Consensus 377 ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~------~l~~~i~~ll~~~~~~ 449 (488)
.+=+++++ -+...+--++.-+|||+-. |.....+..| ...||++- |+. ...+.++++++.. -.
T Consensus 241 Y~~~vfg~----~pfvpmg~fssiVPVitlg--gisKrW~VPG---WRlGWi~~hD~~gvf~~~~~~q~~~~~~~~~-~~ 310 (447)
T KOG0259|consen 241 YGHTVFGD----KPFVPMGKFSSIVPVITLG--GISKRWIVPG---WRLGWIALHDPRGVFRDTKVVQGIKNFLDII-PG 310 (447)
T ss_pred cceeecCC----CCccchhhccccCceEeec--ccccccccCC---ceeeeEEEecccccccchHHHHHHHHHHhcc-CC
Confidence 12233332 1344455567789999863 3333333322 26677652 322 2334555555411 11
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy15555 450 KTRISQNAVSSVDRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 450 ~~~~~~~a~~~~~~~s~~~~~~~~~~~~~ 478 (488)
-..+-|.|.-.+-.-+.+.+.+.-.++++
T Consensus 311 p~TiiQ~AlP~IL~kTp~efF~k~~~~lk 339 (447)
T KOG0259|consen 311 PATIIQGALPDILEKTPEEFFDKKLSFLK 339 (447)
T ss_pred ccHhHHHHhHHHHHhChHHHHHHHHHHHH
Confidence 23344455544422245555554444444
No 460
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=22.83 E-value=6.8e+02 Score=24.39 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=28.4
Q ss_pred HHHHHHHHhCcEEE-EcCCCC-----cC---CccHHHHHHcCCcEEEeCCCCC
Q psy15555 368 EDMKKEFSEGLIGL-HAMWNE-----HF---GIGIVECMAAGLIMIAHKSGGP 411 (488)
Q Consensus 368 ~el~~~~~~ad~~v-~~s~~e-----~~---g~~~lEa~a~G~PvI~~~~~~~ 411 (488)
.++.++++.||+++ +....+ +. +-..++.|.-|.-+|-+.-|+.
T Consensus 159 ~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~v 211 (378)
T PRK15438 159 RSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAV 211 (378)
T ss_pred CCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchh
Confidence 46888999999654 333222 33 3457788888877777665544
No 461
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=22.79 E-value=7e+02 Score=24.10 Aligned_cols=102 Identities=10% Similarity=0.083 Sum_probs=59.2
Q ss_pred ChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC---CChHHHHHHHHhC--
Q psy15555 303 DHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN---LPYEDMKKEFSEG-- 377 (488)
Q Consensus 303 ~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~---~~~~el~~~~~~a-- 377 (488)
.++.+.++++..++.+ -.+. +........+.++..++-+.+.+.|. +.|.+.+. ....++..+++..
T Consensus 110 ~~~~~~~~i~~ak~~G-----~~v~--~~~eda~r~~~~~l~~~~~~~~~~g~-~~i~l~DT~G~~~P~~v~~li~~l~~ 181 (363)
T TIGR02090 110 VLEKAVEAVEYAKEHG-----LIVE--FSAEDATRTDIDFLIKVFKRAEEAGA-DRINIADTVGVLTPQKMEELIKKLKE 181 (363)
T ss_pred HHHHHHHHHHHHHHcC-----CEEE--EEEeecCCCCHHHHHHHHHHHHhCCC-CEEEEeCCCCccCHHHHHHHHHHHhc
Confidence 3455566666666543 3333 33322223445666777777777774 56666543 4555665555543
Q ss_pred --cEEEEcCCCCcCCc---cHHHHHHcCCcEEEeCCCCCc
Q psy15555 378 --LIGLHAMWNEHFGI---GIVECMAAGLIMIAHKSGGPK 412 (488)
Q Consensus 378 --d~~v~~s~~e~~g~---~~lEa~a~G~PvI~~~~~~~~ 412 (488)
++-+.......+|+ +.++|+.+|.-.|-+...|.-
T Consensus 182 ~~~~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~GlG 221 (363)
T TIGR02090 182 NVKLPISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGIG 221 (363)
T ss_pred ccCceEEEEecCCCChHHHHHHHHHHCCCCEEEEEeeccc
Confidence 33333334555665 468999999999887776654
No 462
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=22.68 E-value=2.1e+02 Score=24.22 Aligned_cols=79 Identities=11% Similarity=0.076 Sum_probs=37.6
Q ss_pred HHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh-----CcE
Q psy15555 305 PLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE-----GLI 379 (488)
Q Consensus 305 ~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~-----ad~ 379 (488)
..+++|+.+.++. .-+.-++|....- ..+....+-+|+ ++.....-+.+|+...+.. +|+
T Consensus 64 ~Dil~al~~a~~~-------~~~Iavv~~~~~~------~~~~~~~~ll~~--~i~~~~~~~~~e~~~~i~~~~~~G~~v 128 (176)
T PF06506_consen 64 FDILRALAKAKKY-------GPKIAVVGYPNII------PGLESIEELLGV--DIKIYPYDSEEEIEAAIKQAKAEGVDV 128 (176)
T ss_dssp HHHHHHHHHCCCC-------TSEEEEEEESS-S------CCHHHHHHHHT---EEEEEEESSHHHHHHHHHHHHHTT--E
T ss_pred hHHHHHHHHHHhc-------CCcEEEEeccccc------HHHHHHHHHhCC--ceEEEEECCHHHHHHHHHHHHHcCCcE
Confidence 3566777776643 2345555544322 112333333343 4555555566777766655 556
Q ss_pred EEEcCCCCcCCccHHHHHHcCCcEE
Q psy15555 380 GLHAMWNEHFGIGIVECMAAGLIMI 404 (488)
Q Consensus 380 ~v~~s~~e~~g~~~lEa~a~G~PvI 404 (488)
+|+++ ...--|-.+|.|.+
T Consensus 129 iVGg~------~~~~~A~~~gl~~v 147 (176)
T PF06506_consen 129 IVGGG------VVCRLARKLGLPGV 147 (176)
T ss_dssp EEESH------HHHHHHHHTTSEEE
T ss_pred EECCH------HHHHHHHHcCCcEE
Confidence 66642 23333444555544
No 463
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=22.66 E-value=1.9e+02 Score=22.13 Aligned_cols=75 Identities=13% Similarity=0.059 Sum_probs=43.9
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHH--hCcEEEEcCCCCcCCccHHHHH--HcCCcE
Q psy15555 328 LIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS--EGLIGLHAMWNEHFGIGIVECM--AAGLIM 403 (488)
Q Consensus 328 l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~--~ad~~v~~s~~e~~g~~~lEa~--a~G~Pv 403 (488)
|++.|.|-.. .-..+.+++.+++.|++-.+.-. +..++..... .+|+++.+.... |=..=++.. ..|+||
T Consensus 5 LlvCg~G~ST--Slla~k~k~~~~e~gi~~~i~a~---~~~e~~~~~~~~~~DvIll~PQi~-~~~~~i~~~~~~~~ipv 78 (104)
T PRK09590 5 LIICAAGMSS--SMMAKKTTEYLKEQGKDIEVDAI---TATEGEKAIAAAEYDLYLVSPQTK-MYFKQFEEAGAKVGKPV 78 (104)
T ss_pred EEECCCchHH--HHHHHHHHHHHHHCCCceEEEEe---cHHHHHHhhccCCCCEEEEChHHH-HHHHHHHHHhhhcCCCE
Confidence 5667777522 14457788888988886333333 3367777654 589777764211 111223333 468999
Q ss_pred EEeCC
Q psy15555 404 IAHKS 408 (488)
Q Consensus 404 I~~~~ 408 (488)
..-+.
T Consensus 79 ~~I~~ 83 (104)
T PRK09590 79 VQIPP 83 (104)
T ss_pred EEeCH
Confidence 88654
No 464
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=22.59 E-value=2.5e+02 Score=26.26 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=23.6
Q ss_pred CCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChh
Q psy15555 66 GGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPS 100 (488)
Q Consensus 66 gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~ 100 (488)
||+.-.-.+.+.+|.+. +++++++-.-.++...
T Consensus 7 GGAGYIGSHtv~~Ll~~--G~~vvV~DNL~~g~~~ 39 (329)
T COG1087 7 GGAGYIGSHTVRQLLKT--GHEVVVLDNLSNGHKI 39 (329)
T ss_pred cCcchhHHHHHHHHHHC--CCeEEEEecCCCCCHH
Confidence 45666667888899997 7888888775554433
No 465
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=22.42 E-value=3.6e+02 Score=22.53 Aligned_cols=67 Identities=7% Similarity=-0.138 Sum_probs=43.0
Q ss_pred CChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEE
Q psy15555 302 KDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGL 381 (488)
Q Consensus 302 k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v 381 (488)
=++.+.++|+..+.... -+.-+++-|++ -|..+.+.+++.|. .|...|. +..--..+-++||-|+
T Consensus 89 ~Dv~laIDame~~~~~~-----iD~~vLvSgD~-------DF~~Lv~~lre~G~--~V~v~g~-~~~ts~~L~~acd~FI 153 (160)
T TIGR00288 89 VDVRMAVEAMELIYNPN-----IDAVALVTRDA-------DFLPVINKAKENGK--ETIVIGA-EPGFSTALQNSADIAI 153 (160)
T ss_pred ccHHHHHHHHHHhccCC-----CCEEEEEeccH-------hHHHHHHHHHHCCC--EEEEEeC-CCCChHHHHHhcCeEE
Confidence 36788899998874332 35555556654 24677777777774 5777774 2223446788899776
Q ss_pred Ec
Q psy15555 382 HA 383 (488)
Q Consensus 382 ~~ 383 (488)
.-
T Consensus 154 ~L 155 (160)
T TIGR00288 154 IL 155 (160)
T ss_pred eC
Confidence 53
No 466
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=22.26 E-value=5.6e+02 Score=22.75 Aligned_cols=36 Identities=8% Similarity=0.004 Sum_probs=22.2
Q ss_pred HHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEE
Q psy15555 369 DMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIA 405 (488)
Q Consensus 369 el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~ 405 (488)
++.+.+..+|++|+.|....++-..++.|+ ..|+|.
T Consensus 90 ~l~~~l~~~dvlIgaT~~G~~~~~~l~~m~-~~~ivf 125 (226)
T cd05311 90 TLKEALKGADVFIGVSRPGVVKKEMIKKMA-KDPIVF 125 (226)
T ss_pred CHHHHHhcCCEEEeCCCCCCCCHHHHHhhC-CCCEEE
Confidence 344566779999988863334445566665 445555
No 467
>PRK13845 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=22.25 E-value=4.9e+02 Score=25.76 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=39.3
Q ss_pred CCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcC
Q psy15555 288 GPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLS 354 (488)
Q Consensus 288 ~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~ 354 (488)
.+...+.+--+....++..++++.....++. + +.++++|+. +.+++.+++++
T Consensus 92 ~~~~~IAVDaMGGD~aP~~iV~Ga~~Al~~~-----~-l~iiLVGde---------~~I~~~l~~~~ 143 (437)
T PRK13845 92 SDRIWVAVDGMGGDYAPGPILEGCLQAISRL-----P-LNIKFVGEI---------EKVKEAAEALG 143 (437)
T ss_pred cCceEEEEEccCCCcChHHHHHHHHHHHHhC-----C-CEEEEEeCH---------HHHHHHHHhcc
Confidence 3445677778888899999999988887776 5 899999975 55666666554
No 468
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.22 E-value=5.4e+02 Score=23.83 Aligned_cols=46 Identities=11% Similarity=0.127 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy15555 431 DEVEYAQTIKLIL-HLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 431 ~~~~l~~~i~~ll-~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~ 478 (488)
+...+++.|.+.+ ..+|+......+|+.++.++ .+...+++.+.+.
T Consensus 125 ~~~~~a~~Ia~~L~~~dP~~~~~y~~N~~~~~~~--L~~l~~~~~~~l~ 171 (287)
T cd01137 125 NAIIYVKNIAKALSEADPANAETYQKNAAAYKAK--LKALDEWAKAKFA 171 (287)
T ss_pred HHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHH--HHHHHHHHHHHHh
Confidence 6667777776655 34777777777777666544 3444444444443
No 469
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=22.20 E-value=3.8e+02 Score=25.30 Aligned_cols=57 Identities=12% Similarity=0.147 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcCCCCcCCccHHHHHHcCCcEEEeCC
Q psy15555 344 KDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAMWNEHFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 344 ~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~ 408 (488)
+..++.+++.+.+ ...+++.++++. .|+++..+....-.-..+.|+..|++|+|-..
T Consensus 41 ~~a~~~a~~~~~~--------~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKP 99 (342)
T COG0673 41 ERAEAFAEEFGIA--------KAYTDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKP 99 (342)
T ss_pred HHHHHHHHHcCCC--------cccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCC
Confidence 5567777777754 122566677776 47665555332222245899999999999544
No 470
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=22.12 E-value=8.3e+02 Score=24.69 Aligned_cols=162 Identities=12% Similarity=0.091 Sum_probs=82.4
Q ss_pred hcccCEEEEcChhHHHHHHHHhcc-CCceEEEcCC-C------CchhhhccCCCCCCCCeEEEEeeccC--CCCChHHHH
Q psy15555 239 GKYSDIIMVNSSWTEEHVIQLWNC-QLKTYKLYPP-C------DTEDLKKITHSKTDGPVKIISVAQFR--PEKDHPLQL 308 (488)
Q Consensus 239 ~~~~d~ii~~s~~~~~~~~~~~~~-~~k~~vi~~~-~------d~~~~~~~~~~~~~~~~~i~~~g~~~--~~k~~~~ll 308 (488)
+...|.|.-..+...+.+.+.... ..+...+.+. + |.+..........+-+.+.+....+. ...|.+...
T Consensus 94 l~E~dvVfGg~~kL~~~I~ei~~~~~P~~I~V~tTC~~~lIGdDi~~v~~~~~~~~~~pvi~v~t~Gf~g~~~~G~~~a~ 173 (475)
T PRK14478 94 LSETDVVFGGEKKLFKAIDEIIEKYAPPAVFVYQTCVVALIGDDIDAVCKRAAEKFGIPVIPVNSPGFVGNKNLGNKLAG 173 (475)
T ss_pred CCcCceeeCCHHHHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHHHHHHHHHhhCCCEEEEECCCcccchhhhHHHHH
Confidence 455677777666666666665442 2244444442 2 22222111111112222223222222 335666666
Q ss_pred HHHHH-hHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCC
Q psy15555 309 RAMYQ-LRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNE 387 (488)
Q Consensus 309 ~a~~~-l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e 387 (488)
+++-. +..........+-.+-|+|...... -..++++++++.|+..+..+.+..+.+|+.. +..|.+-+..+ .
T Consensus 174 ~al~~~l~~~~~~~~~~~~~VNiiG~~~~~g---d~~elk~lL~~~Gl~v~~~~~~~~s~eei~~-~~~A~lniv~~--~ 247 (475)
T PRK14478 174 EALLDHVIGTVEPEDTTPYDINILGEYNLAG---ELWQVKPLLDRLGIRVVACITGDARYDDVAS-AHRARANMMVC--S 247 (475)
T ss_pred HHHHHHHhccCCccCCCCCeEEEEeCCCCCC---CHHHHHHHHHHcCCeEEEEcCCCCCHHHHHh-cccCcEEEEEc--H
Confidence 65543 3311100000234577888553322 2378999999999987767777767788887 66666433322 1
Q ss_pred cCCccHHHHHH--cCCcEEEe
Q psy15555 388 HFGIGIVECMA--AGLIMIAH 406 (488)
Q Consensus 388 ~~g~~~lEa~a--~G~PvI~~ 406 (488)
..+....|.|. +|+|.+..
T Consensus 248 ~~~~~~A~~L~erfGiP~~~~ 268 (475)
T PRK14478 248 GAMINLARKMEERYGIPFFEG 268 (475)
T ss_pred HHHHHHHHHHHHHhCCCEEec
Confidence 12334455443 59998753
No 471
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=22.05 E-value=5.5e+02 Score=22.58 Aligned_cols=107 Identities=14% Similarity=0.113 Sum_probs=59.0
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCC-CcCCccHH-HHH---Hc
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWN-EHFGIGIV-ECM---AA 399 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~-e~~g~~~l-Ea~---a~ 399 (488)
...++++.++| -..+-++..++ .++. -+.... +.++........|+++.--.. +.-|...+ +.+ .-
T Consensus 10 ~~~~~~v~~~~-----l~~~~l~~~L~-~~~~-v~~~~~--~~~~~~~~~~~~DvvllDi~~p~~~G~~~~~~~i~~~~p 80 (216)
T PRK10100 10 GHTLLLITKPS-----LQATALLQHLK-QSLA-ITGKLH--NIQRSLDDISSGSIILLDMMEADKKLIHYWQDTLSRKNN 80 (216)
T ss_pred CceEEEEeChH-----hhhHHHHHHHH-HhCC-CeEEEc--CHHHhhccCCCCCEEEEECCCCCccHHHHHHHHHHHhCC
Confidence 45688889887 44466666665 2222 111122 224554445557876664433 33455443 433 24
Q ss_pred CCcEEEeCCCCCc-cceecc--CCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 GLIMIAHKSGGPK-MDIVIE--DPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 G~PvI~~~~~~~~-~eiv~~--~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
+.+||........ .+.... + ..|++.. +.+++.++|..++.
T Consensus 81 ~~~vvvlt~~~~~~~~~~~~~~G----a~G~l~K~~~~~~L~~aI~~v~~ 126 (216)
T PRK10100 81 NIKILLLNTPEDYPYREIENWPH----INGVFYAMEDQERVVNGLQGVLR 126 (216)
T ss_pred CCcEEEEECCchhHHHHHHHhcC----CeEEEECCCCHHHHHHHHHHHHc
Confidence 6777775432211 111221 3 5688876 89999999998887
No 472
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=21.93 E-value=5.5e+02 Score=22.52 Aligned_cols=61 Identities=15% Similarity=0.259 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCCCcEEEecCC--ChHHHHHHHHhCcEEEEcCCCCcC------CccHHHH-HHcCCcEEE
Q psy15555 344 KDMQDLCKHLSLENNVEFKVNL--PYEDMKKEFSEGLIGLHAMWNEHF------GIGIVEC-MAAGLIMIA 405 (488)
Q Consensus 344 ~~l~~~~~~~~l~~~v~~~g~~--~~~el~~~~~~ad~~v~~s~~e~~------g~~~lEa-~a~G~PvI~ 405 (488)
+++.+.+++.+ .|-+...|+. =..++.+.+..--+-++||..+.| |..+.++ +..|.....
T Consensus 68 ~~~~~~l~~~~-~Dliv~agy~~il~~~~l~~~~~~~iNiHpSLLP~yrG~g~~~~~v~~a~i~~g~~~tG 137 (207)
T PLN02331 68 DELVDALRGAG-VDFVLLAGYLKLIPVELVRAYPRSILNIHPALLPAFGGKGYYGIKVHKAVIASGARYSG 137 (207)
T ss_pred HHHHHHHHhcC-CCEEEEeCcchhCCHHHHhhCCCCEEEEeCccccCCCCCCcccchHHHHHHHcCCCeEE
Confidence 44555555555 3455555653 113455555543466888865544 3566666 457887644
No 473
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=21.87 E-value=8.9e+02 Score=25.12 Aligned_cols=110 Identities=10% Similarity=-0.048 Sum_probs=55.0
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCC-------------cEEEecCCC--------hHHHHHHHHhCc-EEEEcC
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLEN-------------NVEFKVNLP--------YEDMKKEFSEGL-IGLHAM 384 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~-------------~v~~~g~~~--------~~el~~~~~~ad-~~v~~s 384 (488)
-++++|.+-... +-.+++.++++.+|.+- +-.+.|... .....++++.|| +++.++
T Consensus 216 Pvil~G~g~~~~--~a~~~l~~lae~lg~pV~~t~~~kg~~p~~hp~~~G~~g~~~~~~~~~~~~~~~l~~aDlvl~lG~ 293 (578)
T PRK06112 216 PVVVAGGGVHIS--GASAALAALQSLAGLPVATTNMGKGAVDETHPLSLGVVGSLMGPRSPGRHLRDLVREADVVLLVGT 293 (578)
T ss_pred cEEEECCCcccc--chHHHHHHHHHHhCCCEEEcccccccCCCCCccccccccccCCCccchHHHHHHHHhCCEEEEECC
Confidence 467788764221 33478999999998751 112233211 125667889999 445555
Q ss_pred CCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHHc
Q psy15555 385 WNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILH 444 (488)
Q Consensus 385 ~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~ 444 (488)
....+...-.....-++.+|--+... .++-... ..-.+..|...+.+.+.+.+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~i~id~d~--~~~~~~~----~~~~i~~D~~~~l~~L~~~l~ 347 (578)
T PRK06112 294 RTNQNGTDSWSLYPEQAQYIHIDVDG--EEVGRNY----EALRLVGDARLTLAALTDALR 347 (578)
T ss_pred CCCccccccccccCCCCeEEEEECCh--HHhCccc----cceEEEeCHHHHHHHHHHhhh
Confidence 43322211111112244555554321 1222221 112234488877777766554
No 474
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=21.84 E-value=2.3e+02 Score=22.84 Aligned_cols=7 Identities=29% Similarity=0.937 Sum_probs=3.1
Q ss_pred EEEEecc
Q psy15555 54 TVAFFHP 60 (488)
Q Consensus 54 rI~~~~~ 60 (488)
-|-|+.+
T Consensus 67 diQfinp 73 (189)
T PF05568_consen 67 DIQFINP 73 (189)
T ss_pred cccccCc
Confidence 3445443
No 475
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=21.79 E-value=3.1e+02 Score=24.89 Aligned_cols=94 Identities=12% Similarity=-0.121 Sum_probs=0.0
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
|||+++ ||..-...++..|.+.+. +.+.+++...+......... ..+..=.....
T Consensus 1 m~ILvl--------gGTtE~r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~~~-------------~~v~~G~lg~~--- 55 (249)
T PF02571_consen 1 MKILVL--------GGTTEGRKLAERLAEAGY-VIVSVATSYGGELLKPELPG-------------LEVRVGRLGDE--- 55 (249)
T ss_pred CEEEEE--------echHHHHHHHHHHHhcCC-EEEEEEhhhhHhhhccccCC-------------ceEEECCCCCH---
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhcCCcEEE-ecCCccchhh----hhhhhCCCeeEEE
Q psy15555 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYI-DTMGYAFTYP----LFSYIGGSKVACY 187 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii-~~~~~~~~~~----~~~~~~~~~~v~~ 187 (488)
-....++++.++|.|+ .|+++...+. .+....++|.+-+
T Consensus 56 ----------------~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 56 ----------------EGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred ----------------HHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEE
No 476
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=21.77 E-value=3.9e+02 Score=20.84 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhC-cEEE
Q psy15555 303 DHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEG-LIGL 381 (488)
Q Consensus 303 ~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~a-d~~v 381 (488)
|....++++++ ..+.++|+...-.. .+..+.+..+++..+++ +.+.+. .+|+....... .+.+
T Consensus 30 G~~~v~kaikk----------gka~LVilA~D~s~--~~~~~~i~~lc~~~~Ip--~~~~~s--k~eLG~a~Gk~~~~sv 93 (117)
T TIGR03677 30 GTNEVTKAVER----------GIAKLVVIAEDVEP--PEIVAHLPALCEEKGIP--YVYVKK--KEDLGAAAGLEVGAAS 93 (117)
T ss_pred cHHHHHHHHHc----------CCccEEEEeCCCCc--HHHHHHHHHHHHHcCCC--EEEeCC--HHHHHHHhCCCCCeEE
Confidence 55555555543 35667766644321 13568899999998876 666664 49999998874 3433
Q ss_pred EcCCCCcCCccHH
Q psy15555 382 HAMWNEHFGIGIV 394 (488)
Q Consensus 382 ~~s~~e~~g~~~l 394 (488)
..-..+++.-.++
T Consensus 94 vaI~d~g~a~~~~ 106 (117)
T TIGR03677 94 AAIVDEGKAEELL 106 (117)
T ss_pred EEEEchhhhHHHH
Confidence 3333445444433
No 477
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=21.73 E-value=71 Score=21.22 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=13.3
Q ss_pred cHHHHHHcCCcEEEe
Q psy15555 392 GIVECMAAGLIMIAH 406 (488)
Q Consensus 392 ~~lEa~a~G~PvI~~ 406 (488)
.+.|++..|.||++-
T Consensus 16 kI~esav~G~pVvAL 30 (58)
T PF11238_consen 16 KIAESAVMGTPVVAL 30 (58)
T ss_pred HHHHHHhcCceeEee
Confidence 589999999999983
No 478
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.60 E-value=7.7e+02 Score=25.58 Aligned_cols=111 Identities=9% Similarity=-0.070 Sum_probs=55.8
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcE-------------EEec---CCChHHHHHHHHhCcE-EEEcCCCCcC
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNV-------------EFKV---NLPYEDMKKEFSEGLI-GLHAMWNEHF 389 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v-------------~~~g---~~~~~el~~~~~~ad~-~v~~s~~e~~ 389 (488)
-++++|.+-... .-.+++.++++.++.+--. .++| .....+...++..||+ ++.++.....
T Consensus 209 Pvil~G~g~~~~--~a~~~l~~lae~~g~pv~tt~~~kg~~~~~hp~~~G~~G~~~~~~~~~~l~~aD~il~vG~~~~~~ 286 (574)
T PRK06466 209 PVIYSGGGVVLG--NASALLTELAHLLNLPVTNTLMGLGGFPGTDRQFLGMLGMHGTYEANMAMHHADVILAVGARFDDR 286 (574)
T ss_pred CEEEECCCcccc--ChHHHHHHHHHHhCCCEEEcCccCCCCCCCChhhcCCCccccCHHHHHHHHhCCEEEEECCCCCcc
Confidence 478889875322 2347899999999875111 1222 2233566778999994 4444432222
Q ss_pred CccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHHc
Q psy15555 390 GIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILH 444 (488)
Q Consensus 390 g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~ 444 (488)
...-.....-+..+|.-+... .++-... . ...-+..|..++.+.|...+.
T Consensus 287 ~~~~~~~~~~~~~vi~id~d~--~~i~~~~--~-~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK06466 287 VTNGPAKFCPNAKIIHIDIDP--ASISKTI--K-ADIPIVGPVESVLTEMLAILK 336 (574)
T ss_pred ccCchhhcCCCCeEEEEECCH--HHhCCcc--C-CCeEEecCHHHHHHHHHHHhh
Confidence 211112223344566654421 1222211 0 112234477777777766553
No 479
>TIGR02014 BchZ chlorophyllide reductase subunit Z. This model represents the Z subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=21.58 E-value=6.3e+02 Score=25.50 Aligned_cols=94 Identities=15% Similarity=0.230 Sum_probs=55.1
Q ss_pred EEEEEecCCCC-CcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEE
Q psy15555 327 KLIFIGSTRNE-EDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIA 405 (488)
Q Consensus 327 ~l~ivG~~~~~-~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~ 405 (488)
++-|+|..+.. ..+.-..+++++++..|++.+..+.+..+-+|+.. +..|.+-+..+. + .|..+-| .+|+|.+.
T Consensus 154 ~VNIiG~~~g~~~~~~Dl~ElkrlL~~~Gi~vn~v~~~Gtsv~di~~-l~~A~~nIv~~~-~-~a~~L~e--~~GvP~l~ 228 (468)
T TIGR02014 154 RVNIIGPTYGCFNMPSDLAEIRRLVEGIGAEVAHVYPLGSHLAEITK-LKNADANIVMYR-E-FGRGLAE--KLGKPYLQ 228 (468)
T ss_pred eEEEECCCcCcCCChhHHHHHHHHHHHcCCcEEEEcCCcCCHHHHHh-hccCcEEEeecH-H-HHHHHHH--HHCCCccc
Confidence 46677631111 11244589999999999988777777666688876 455554443332 1 2332222 46888865
Q ss_pred eCCCCCccceeccCCCccccceecCCHHHHHHHHHHHHc
Q psy15555 406 HKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILH 444 (488)
Q Consensus 406 ~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~ 444 (488)
.+. |. .+.+.+...|.+++.
T Consensus 229 ~Pi-Gl------------------~~Td~fLr~L~~~~g 248 (468)
T TIGR02014 229 API-GI------------------ESTTAFLRKLGRLLG 248 (468)
T ss_pred cCC-CH------------------HHHHHHHHHHHHHhC
Confidence 331 11 235667777777765
No 480
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=21.44 E-value=9.3e+02 Score=27.35 Aligned_cols=41 Identities=29% Similarity=0.233 Sum_probs=25.5
Q ss_pred cEEEEeccCCCCCC-Cce--ehHHHHHHHHHHhCCCeeEEEEeCCC
Q psy15555 53 KTVAFFHPYCNAGG-GGE--RVLWTAVLALHQKYPDYKIYIYTGDV 95 (488)
Q Consensus 53 ~rI~~~~~~~~~~g-G~e--~~~~~l~~~L~~~~~~~~v~~~~~~~ 95 (488)
+||+++.......| |.| ..+.+++++|++. |++++++...+
T Consensus 555 ~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~--G~~vI~v~~np 598 (1050)
T TIGR01369 555 KKVLVLGSGPNRIGQGVEFDYCCVHAVLALREL--GYETIMINYNP 598 (1050)
T ss_pred ceEEEecCcccccccccccchHHHHHHHHHHhC--CCEEEEEecCC
Confidence 46666543322222 444 4577899999998 67777776654
No 481
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=21.44 E-value=5.1e+02 Score=22.02 Aligned_cols=64 Identities=8% Similarity=0.031 Sum_probs=32.4
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHH
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMA 398 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a 398 (488)
..++|+..|..... ..+++++.+.+ + .+-..+.|- .+=-.++|..||..|.. .+++|+..-|+|
T Consensus 78 ~vvhLtmyga~~~~----~~~~ir~~~~~-~-~p~LIvvGg--~gvp~evye~aDynlgv---g~qpHSvrAAlA 141 (176)
T PRK03958 78 IVVHLTMYGENIQD----VEPEIREAHRK-G-EPLLIVVGA--EKVPREVYELADWNVAV---GNQPHSEVAALA 141 (176)
T ss_pred cEEEEEEecCCccc----hHHHHHHhhcc-C-CcEEEEEcC--CCCCHHHHhhCCEEecc---CCCChHHHHHHH
Confidence 35566666654321 33555554433 2 233444452 13445678888877643 344555444443
No 482
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=21.41 E-value=1.5e+02 Score=25.80 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=19.1
Q ss_pred HHHHHHhcCCCCcEEEecCCChHHHHHHH-HhCcEEEEcC
Q psy15555 346 MQDLCKHLSLENNVEFKVNLPYEDMKKEF-SEGLIGLHAM 384 (488)
Q Consensus 346 l~~~~~~~~l~~~v~~~g~~~~~el~~~~-~~ad~~v~~s 384 (488)
++++..+.|..-.+..=|.++.+.+..+. +.+|++|.+|
T Consensus 156 l~~~~~~~~~~~~I~vDGGI~~~~~~~~~~aGad~~V~Gs 195 (201)
T PF00834_consen 156 LRKLIPENGLDFEIEVDGGINEENIKQLVEAGADIFVAGS 195 (201)
T ss_dssp HHHHHHHHTCGSEEEEESSESTTTHHHHHHHT--EEEESH
T ss_pred HHHHHHhcCCceEEEEECCCCHHHHHHHHHcCCCEEEECH
Confidence 34444444433344445555555666555 4566666665
No 483
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=21.24 E-value=9.2e+02 Score=24.88 Aligned_cols=110 Identities=10% Similarity=-0.022 Sum_probs=56.2
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCC-------------cEEEec---CCChHHHHHHHHhCcE-EEEcCCCCcC
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLEN-------------NVEFKV---NLPYEDMKKEFSEGLI-GLHAMWNEHF 389 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~-------------~v~~~g---~~~~~el~~~~~~ad~-~v~~s~~e~~ 389 (488)
-++++|.+.... .-.+++.++++.++.+- +=.+.| .....+...++..||+ ++.++.....
T Consensus 204 Pvi~~G~g~~~~--~a~~~l~~lae~l~~pv~tt~~~kg~~~e~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~ 281 (558)
T TIGR00118 204 PVILVGGGVIIA--GASEELKELAERIQIPVTTTLMGLGSFPEDHPLSLGMLGMHGTKTANLAVHECDLIIAVGARFDDR 281 (558)
T ss_pred cEEEECCCcccc--chHHHHHHHHHHhCCCEEEccccCCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEECCCCCcc
Confidence 478888775322 23478999999988751 112222 2223456788999994 4445533222
Q ss_pred CccHHHHHHcCCcEEEeCCCCCccceeccCCCcccc-ceecCCHHHHHHHHHHHHc
Q psy15555 390 GIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRN-GFLACDEVEYAQTIKLILH 444 (488)
Q Consensus 390 g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~-g~~~~~~~~l~~~i~~ll~ 444 (488)
...-.....-+.++|.-+.... ++-... .. -.+..|..++.+++.+.+.
T Consensus 282 ~~~~~~~~~~~~~~i~id~d~~--~~~~~~----~~~~~i~~d~~~~l~~L~~~l~ 331 (558)
T TIGR00118 282 VTGNLAKFAPNAKIIHIDIDPA--EIGKNV----RVDIPIVGDARNVLEELLKKLF 331 (558)
T ss_pred ccCchhhcCCCCcEEEEeCCHH--HhCCcC----CCCeEEecCHHHHHHHHHHhhh
Confidence 2111222233456665544221 211111 11 1223377777777766553
No 484
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=21.16 E-value=2.8e+02 Score=24.63 Aligned_cols=27 Identities=4% Similarity=-0.045 Sum_probs=16.5
Q ss_pred cEEEecCCChHHHHHHHHh-CcEEEEcC
Q psy15555 358 NVEFKVNLPYEDMKKEFSE-GLIGLHAM 384 (488)
Q Consensus 358 ~v~~~g~~~~~el~~~~~~-ad~~v~~s 384 (488)
.+..-|.++.+.+..+... +|++|.+|
T Consensus 173 ~IeVDGGI~~eti~~l~~aGaDi~V~GS 200 (223)
T PRK08745 173 RLEIDGGVKADNIGAIAAAGADTFVAGS 200 (223)
T ss_pred eEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 3555566666666655543 67777766
No 485
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=21.13 E-value=80 Score=31.14 Aligned_cols=68 Identities=13% Similarity=0.233 Sum_probs=40.3
Q ss_pred HHHHHHHHhCcE-EEEc-------CC-----CCcCCccHHHHHHcCCcEEEeCC--CC---CccceeccCCCccccceec
Q psy15555 368 EDMKKEFSEGLI-GLHA-------MW-----NEHFGIGIVECMAAGLIMIAHKS--GG---PKMDIVIEDPETCRNGFLA 429 (488)
Q Consensus 368 ~el~~~~~~ad~-~v~~-------s~-----~e~~g~~~lEa~a~G~PvI~~~~--~~---~~~eiv~~~~~~~~~g~~~ 429 (488)
+|+..-+.+.|+ +|.+ .. .+-+|++++|..-+..-++.-.. .| ...+++-.. ++-.++
T Consensus 373 deIN~~F~~tDvalVIGANDvVNPaA~~dp~SpIyGMPvL~v~kAk~Viv~KRs~~~GyAGv~NpLF~~~----nt~Mlf 448 (462)
T PRK09444 373 DEINDDFADTDTVLVIGANDTVNPAAQEDPNSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKE----NTQMLF 448 (462)
T ss_pred HhhccccccCCEEEEecCccCCCcccccCCCCCcCCCceeehhhCCEEEEEeCCCCCCcCCCCCcceecC----CceEEe
Confidence 577778889994 4433 21 22378899999998888887443 22 222333333 344555
Q ss_pred CCHHHHHHHH
Q psy15555 430 CDEVEYAQTI 439 (488)
Q Consensus 430 ~~~~~l~~~i 439 (488)
.|.++-.+.+
T Consensus 449 GDAK~~~~~l 458 (462)
T PRK09444 449 GDAKASVDAI 458 (462)
T ss_pred ccHHHHHHHH
Confidence 5666555544
No 486
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.06 E-value=6.1e+02 Score=23.31 Aligned_cols=109 Identities=6% Similarity=0.024 Sum_probs=52.5
Q ss_pred HHHHHHHHhCcEEEE-cCCCCcCCccHHHHHHcCCcEEEeCCCCCccceecc-C-CCccccceecC-CHHHHHHHHHHHH
Q psy15555 368 EDMKKEFSEGLIGLH-AMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIE-D-PETCRNGFLAC-DEVEYAQTIKLIL 443 (488)
Q Consensus 368 ~el~~~~~~ad~~v~-~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~-~-~~~~~~g~~~~-~~~~l~~~i~~ll 443 (488)
..-..-++.||+++. +-..|+|--.+++....+.++|....+-.......+ . +.....-|+-+ +...+++.|.+.+
T Consensus 42 p~d~~~l~~Adliv~~G~~~E~w~~k~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~L 121 (276)
T cd01016 42 AGDVEKLQNADVVFYNGLHLEGKMSDVLSKLGSSKSVIALEDTLDRSQLILDEEEGTYDPHIWFDVKLWKYAVKAVAEVL 121 (276)
T ss_pred HHHHHHHHhCCEEEEcCcChHHHHHHHHHHhccCCceEEeccCcCcccccccccCCCCCCCcccCHHHHHHHHHHHHHHH
Confidence 344566778886554 334566656666665434455543222110011111 0 00001223322 5666666666654
Q ss_pred -ccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy15555 444 -HLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 444 -~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~ 478 (488)
..+|+......+|+.++.++ .+..-+.+.+.+.
T Consensus 122 ~~~dP~~~~~y~~N~~~~~~~--L~~l~~~~~~~l~ 155 (276)
T cd01016 122 SEKLPEHKDEFQANSEAYVEE--LDSLDAYAKKKIA 155 (276)
T ss_pred HHHCcccHHHHHHHHHHHHHH--HHHHHHHHHHHHh
Confidence 23677777777777665544 3333344444433
No 487
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=20.95 E-value=7.6e+02 Score=23.86 Aligned_cols=97 Identities=9% Similarity=-0.019 Sum_probs=57.9
Q ss_pred CChHHHHHHHHHhHHhhhhhccCceEEEEEecCC--------CCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHH
Q psy15555 302 KDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTR--------NEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKE 373 (488)
Q Consensus 302 k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~--------~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~ 373 (488)
+..+.+++..+.+++. .++++..|.-- .+-..+-.+.+.+.+++.|++--. ...+..++..+
T Consensus 129 E~~~~~~~~A~~lk~~-------g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t---~v~d~~~~~~l 198 (360)
T PRK12595 129 ESYEQVEAVAKALKAK-------GLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVIS---EIVNPADVEVA 198 (360)
T ss_pred cCHHHHHHHHHHHHHc-------CCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEEE---eeCCHHHHHHH
Confidence 4566777777777653 34555444210 111235567889999999975222 22233566666
Q ss_pred HHhCcEEEEcCCCCcCCccHHHH-HHcCCcEEEeCCC
Q psy15555 374 FSEGLIGLHAMWNEHFGIGIVEC-MAAGLIMIAHKSG 409 (488)
Q Consensus 374 ~~~ad~~v~~s~~e~~g~~~lEa-~a~G~PvI~~~~~ 409 (488)
...+|++-.+|.. ..-..++++ ...|+||+.+...
T Consensus 199 ~~~vd~lkI~s~~-~~n~~LL~~~a~~gkPVilk~G~ 234 (360)
T PRK12595 199 LDYVDVIQIGARN-MQNFELLKAAGRVNKPVLLKRGL 234 (360)
T ss_pred HHhCCeEEECccc-ccCHHHHHHHHccCCcEEEeCCC
Confidence 6669988777732 122456554 4569999998764
No 488
>PRK14142 heat shock protein GrpE; Provisional
Probab=20.91 E-value=2.3e+02 Score=25.09 Aligned_cols=50 Identities=6% Similarity=-0.001 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhh
Q psy15555 431 DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLF 481 (488)
Q Consensus 431 ~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~ 481 (488)
..+++.+.+.++.. +-+.+++..++-++.+..|..+.++..++.++.++-
T Consensus 48 e~~elkdk~lR~~A-EfEN~RKR~erE~e~~~~~A~e~~~kdLLpVlDnLE 97 (223)
T PRK14142 48 KVAELTADLQRVQA-DFANYRKRALRDQQAAADRAKASVVSQLLGVLDDLE 97 (223)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHhHHH
Confidence 35567777777777 777777777777777788999999999988887654
No 489
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=20.88 E-value=6.4e+02 Score=23.08 Aligned_cols=102 Identities=12% Similarity=0.094 Sum_probs=45.6
Q ss_pred cccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcc-cccCCCeeEEEEeeccce
Q psy15555 51 VLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFN-IVLPDQVINFVYLYRRKF 129 (488)
Q Consensus 51 ~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~ 129 (488)
+..+|++--+ ++.|=...+-.|++.+.++++.+-|+.+-++...+...+.-. +.+.. ...+++ +.+...+.+..
T Consensus 28 ~a~~iGiTG~---PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGD-RiRM~~~~~d~~-vfIRS~atRG~ 102 (266)
T PF03308_consen 28 RAHVIGITGP---PGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGD-RIRMQELSRDPG-VFIRSMATRGS 102 (266)
T ss_dssp -SEEEEEEE----TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS---GGGCHHHHTSTT-EEEEEE---SS
T ss_pred CceEEEeeCC---CCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccccc-HHHhcCcCCCCC-EEEeecCcCCC
Confidence 3468887432 222455777889999999855555554444322222222211 11111 112233 55554444333
Q ss_pred eeccCchhHHHHHHHHHHHHHHHHHhhhcCCcEE-EecCC
Q psy15555 130 VEASLYPYFTLLGQSIGSMILGVEALLSFQPDIY-IDTMG 168 (488)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDii-i~~~~ 168 (488)
.+- .-.....+.++++...+|+| ++|-+
T Consensus 103 -----lGG------ls~~t~~~v~ll~aaG~D~IiiETVG 131 (266)
T PF03308_consen 103 -----LGG------LSRATRDAVRLLDAAGFDVIIIETVG 131 (266)
T ss_dssp -----HHH------HHHHHHHHHHHHHHTT-SEEEEEEES
T ss_pred -----CCC------ccHhHHHHHHHHHHcCCCEEEEeCCC
Confidence 111 11122445677888999955 57754
No 490
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=20.86 E-value=9.5e+02 Score=27.35 Aligned_cols=42 Identities=29% Similarity=0.226 Sum_probs=26.4
Q ss_pred ccEEEEeccCCCCCC-Cce--ehHHHHHHHHHHhCCCeeEEEEeCCC
Q psy15555 52 LKTVAFFHPYCNAGG-GGE--RVLWTAVLALHQKYPDYKIYIYTGDV 95 (488)
Q Consensus 52 ~~rI~~~~~~~~~~g-G~e--~~~~~l~~~L~~~~~~~~v~~~~~~~ 95 (488)
++||+++.......| |.| ....+++++|++. |++++++...+
T Consensus 554 ~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~--G~~vi~v~~np 598 (1066)
T PRK05294 554 RKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREA--GYETIMVNCNP 598 (1066)
T ss_pred CceEEEECccccccccccccchhHHHHHHHHHHC--CCEEEEEeCCc
Confidence 467776653332222 444 4677889999998 67777766554
No 491
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=20.82 E-value=5.9e+02 Score=22.48 Aligned_cols=62 Identities=10% Similarity=0.070 Sum_probs=32.8
Q ss_pred CcEEEEcC-CCCcCCccHHHHHH---cCCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHH
Q psy15555 377 GLIGLHAM-WNEHFGIGIVECMA---AGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLI 442 (488)
Q Consensus 377 ad~~v~~s-~~e~~g~~~lEa~a---~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~l 442 (488)
.|+++... ..+.-|..+++.+. .+.|+|......... +.+..+ ..|++.. +.+++.+++.++
T Consensus 50 ~DlvilD~~~p~~~G~eli~~l~~~~~~~~vI~ls~~~~~~~~~~al~~G----a~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 50 IDLILLDIYMQQENGLDLLPVLHEAGCKSDVIVISSAADAATIKDSLHYG----VVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred CCEEEEecCCCCCCcHHHHHHHHhhCCCCCEEEEECCCcHHHHHHHHHcC----CCEEEeCCCCHHHHHHHHHHH
Confidence 57555433 33334555555543 256766643222221 223333 5567665 788888888764
No 492
>PRK13243 glyoxylate reductase; Reviewed
Probab=20.57 E-value=7.1e+02 Score=23.69 Aligned_cols=44 Identities=14% Similarity=0.130 Sum_probs=26.6
Q ss_pred HHHHHHHHhCcEEE-EcCC-CC---cCCccHHHHHHcCCcEEEeCCCCC
Q psy15555 368 EDMKKEFSEGLIGL-HAMW-NE---HFGIGIVECMAAGLIMIAHKSGGP 411 (488)
Q Consensus 368 ~el~~~~~~ad~~v-~~s~-~e---~~g~~~lEa~a~G~PvI~~~~~~~ 411 (488)
.++.++++.||+++ ..+. .+ -++-..+++|--|.-+|-...++.
T Consensus 196 ~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~ 244 (333)
T PRK13243 196 RPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKV 244 (333)
T ss_pred cCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchh
Confidence 36778899999544 3332 22 234456777777776666555543
No 493
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=20.56 E-value=7.2e+02 Score=23.42 Aligned_cols=66 Identities=12% Similarity=0.053 Sum_probs=41.2
Q ss_pred HHHhCc-EEEEcCCCCcCCccHH----HHH-HcCCcEEEeCCCCCccceeccCCCccccceec-CCHHHHHHHHHHHHc
Q psy15555 373 EFSEGL-IGLHAMWNEHFGIGIV----ECM-AAGLIMIAHKSGGPKMDIVIEDPETCRNGFLA-CDEVEYAQTIKLILH 444 (488)
Q Consensus 373 ~~~~ad-~~v~~s~~e~~g~~~l----Ea~-a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~-~~~~~l~~~i~~ll~ 444 (488)
+....| +.+.+|...+.+...+ +-+ ..|+.|+.-..+....+.++.. -+++ +|.+|+.+.+..-+.
T Consensus 126 ~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~L~~~L~~~------P~lIKPN~~EL~~~~g~~~~ 198 (310)
T COG1105 126 LLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSGEALLAALEAK------PWLIKPNREELEALFGRELT 198 (310)
T ss_pred hcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECChHHHHHHHccC------CcEEecCHHHHHHHhCCCCC
Confidence 455577 5667787777776543 332 3488888866665543444432 4454 488888887776655
No 494
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=20.52 E-value=5.8e+02 Score=23.33 Aligned_cols=118 Identities=11% Similarity=0.077 Sum_probs=65.8
Q ss_pred CChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC-CChHHHHHHHHhCcEE
Q psy15555 302 KDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN-LPYEDMKKEFSEGLIG 380 (488)
Q Consensus 302 k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-~~~~el~~~~~~ad~~ 380 (488)
.|.+.+++..+.. .+.=+|+++-|.+ ..+++.+.+++.|+. .|.++.. .+.+.+..+-+.++-|
T Consensus 102 ~G~e~F~~~~~~a----------GvdGlIipDLP~e----e~~~~~~~~~~~gl~-~I~lv~p~t~~~Ri~~i~~~a~gF 166 (259)
T PF00290_consen 102 YGIERFFKEAKEA----------GVDGLIIPDLPPE----ESEELREAAKKHGLD-LIPLVAPTTPEERIKKIAKQASGF 166 (259)
T ss_dssp H-HHHHHHHHHHH----------TEEEEEETTSBGG----GHHHHHHHHHHTT-E-EEEEEETTS-HHHHHHHHHH-SSE
T ss_pred cchHHHHHHHHHc----------CCCEEEEcCCChH----HHHHHHHHHHHcCCe-EEEEECCCCCHHHHHHHHHhCCcE
Confidence 4666665555443 5777899988754 337888889999985 5666655 6778889999998866
Q ss_pred EEc-CCCCcCCc------cHHHHH-----HcCCcEEEeCCCCCcc---ceeccCCCccccceecCCHHHHHHHHHH
Q psy15555 381 LHA-MWNEHFGI------GIVECM-----AAGLIMIAHKSGGPKM---DIVIEDPETCRNGFLACDEVEYAQTIKL 441 (488)
Q Consensus 381 v~~-s~~e~~g~------~~lEa~-----a~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~~~~~l~~~i~~ 441 (488)
|+. |....-|. .+-|.. .+.+|++++=--...+ .+. .+ ..|+++.+ .+.+.+.+
T Consensus 167 iY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~----aDGvIVGS--a~v~~i~~ 235 (259)
T PF00290_consen 167 IYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AG----ADGVIVGS--AFVKIIEE 235 (259)
T ss_dssp EEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TT----SSEEEESH--HHHHHHHH
T ss_pred EEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH-cc----CCEEEECH--HHHHHHHH
Confidence 553 43322221 122211 2379998863222221 222 33 56777753 35555554
No 495
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=20.41 E-value=8e+02 Score=23.86 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=59.8
Q ss_pred CChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEec---CCChHHHHHHHHh--
Q psy15555 302 KDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKV---NLPYEDMKKEFSE-- 376 (488)
Q Consensus 302 k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g---~~~~~el~~~~~~-- 376 (488)
+.++.+.++++..++.+ ..+.+........+.++..++.+.+.+.|. +.|.+.+ .....++.++++.
T Consensus 113 ~~l~~~~~~v~~a~~~G-------~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga-~~I~l~DT~G~~~P~~v~~lv~~l~ 184 (378)
T PRK11858 113 EVLERMVEAVEYAKDHG-------LYVSFSAEDASRTDLDFLIEFAKAAEEAGA-DRVRFCDTVGILDPFTMYELVKELV 184 (378)
T ss_pred HHHHHHHHHHHHHHHCC-------CeEEEEeccCCCCCHHHHHHHHHHHHhCCC-CEEEEeccCCCCCHHHHHHHHHHHH
Confidence 34455555666655543 333333322223455777777777777774 4666654 3455555554443
Q ss_pred --CcEEEEcCCCCcCCc---cHHHHHHcCCcEEEeCCCCCc
Q psy15555 377 --GLIGLHAMWNEHFGI---GIVECMAAGLIMIAHKSGGPK 412 (488)
Q Consensus 377 --ad~~v~~s~~e~~g~---~~lEa~a~G~PvI~~~~~~~~ 412 (488)
.++-+.-.....+|+ +.++|+.+|.-.|-+...|.-
T Consensus 185 ~~~~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlG 225 (378)
T PRK11858 185 EAVDIPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNGLG 225 (378)
T ss_pred HhcCCeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeecccc
Confidence 243333334555665 568999999999988776664
No 496
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=20.38 E-value=2e+02 Score=28.39 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=34.6
Q ss_pred cccccccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCC
Q psy15555 47 KSYNVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDAS 98 (488)
Q Consensus 47 ~~~~~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~ 98 (488)
+.+..+.+|+++++- .| -++.+++.-+.+++|.++|+++-....+.
T Consensus 130 pLP~~p~~IGVITS~---tg---AairDIl~~~~rR~P~~~viv~pt~VQG~ 175 (440)
T COG1570 130 PLPFFPKKIGVITSP---TG---AALRDILHTLSRRFPSVEVIVYPTLVQGE 175 (440)
T ss_pred CCCCCCCeEEEEcCC---ch---HHHHHHHHHHHhhCCCCeEEEEeccccCC
Confidence 345667899998754 22 36678889999999999999998765543
No 497
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=20.22 E-value=3.4e+02 Score=19.50 Aligned_cols=46 Identities=7% Similarity=0.232 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy15555 431 DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 431 ~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~ 478 (488)
+...+.+.+..++ ++.++..+...-.++.+.-+.+..+..+..+++
T Consensus 4 ~~r~f~~q~~~LL--~~~Er~~~~~~L~~Y~~~~~Vd~LV~~L~~vLd 49 (78)
T cd07347 4 QAREFSQQVDHLL--TDAEREQVTRALERYHQERNVDDLVRDLYLVLD 49 (78)
T ss_pred HHHHHHHHHHHHC--CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcC
Confidence 3467788888888 456688888887777755578877777766664
No 498
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=20.15 E-value=5.9e+02 Score=22.19 Aligned_cols=107 Identities=14% Similarity=0.177 Sum_probs=59.1
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH---
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA--- 398 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a--- 398 (488)
..++.++.+.+ ...+.+....+..|. .+..... ..+....+.. .|+++... ....-|..+++.+.
T Consensus 5 ~~~iLiv~d~~-----~~~~~l~~~L~~~g~--~v~~~~~--~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~~~ 75 (239)
T PRK09468 5 NYKILVVDDDM-----RLRALLERYLTEQGF--QVRSAAN--AEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRSQN 75 (239)
T ss_pred CCeEEEEcCCH-----HHHHHHHHHHHHCCC--EEEEECC--HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 45677777654 444666666666553 2443333 2555555543 56555543 33344555665554
Q ss_pred cCCcEEEeCCCCCccce---eccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 AGLIMIAHKSGGPKMDI---VIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 ~G~PvI~~~~~~~~~ei---v~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.+.|+|........... +..+ ..+++.. +.+++...+..++.
T Consensus 76 ~~~pii~ls~~~~~~~~~~~l~~G----a~~~l~kP~~~~~L~~~i~~~~~ 122 (239)
T PRK09468 76 NPTPIIMLTAKGEEVDRIVGLEIG----ADDYLPKPFNPRELLARIRAVLR 122 (239)
T ss_pred CCCCEEEEECCCcHHHHHHHHhcC----CCeEEECCCCHHHHHHHHHHHhc
Confidence 36788875433222122 2222 3456554 88899999888775
Done!