Query psy15555
Match_columns 488
No_of_seqs 361 out of 2754
Neff 10.5
Searched_HMMs 29240
Date Sat Aug 17 00:17:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c48_A Predicted glycosyltrans 100.0 4.9E-40 1.7E-44 326.4 36.1 390 49-487 17-432 (438)
2 2r60_A Glycosyl transferase, g 100.0 5E-40 1.7E-44 331.7 28.8 395 52-485 7-464 (499)
3 3okp_A GDP-mannose-dependent a 100.0 1.6E-39 5.3E-44 318.2 30.1 358 51-485 3-384 (394)
4 3fro_A GLGA glycogen synthase; 100.0 9.8E-39 3.4E-43 317.1 35.9 400 51-486 1-436 (439)
5 3oy2_A Glycosyltransferase B73 100.0 3.9E-39 1.3E-43 317.4 28.2 355 53-485 1-395 (413)
6 2jjm_A Glycosyl transferase, g 100.0 4.7E-39 1.6E-43 314.8 26.3 364 52-485 13-390 (394)
7 2gek_A Phosphatidylinositol ma 100.0 3.6E-38 1.2E-42 309.8 29.6 364 49-485 17-388 (406)
8 2x6q_A Trehalose-synthase TRET 100.0 9.4E-38 3.2E-42 307.8 31.4 360 51-481 39-415 (416)
9 2iw1_A Lipopolysaccharide core 100.0 6.9E-38 2.4E-42 304.3 28.3 354 53-482 1-373 (374)
10 3s28_A Sucrose synthase 1; gly 100.0 6.9E-37 2.4E-41 316.8 30.2 392 51-480 277-769 (816)
11 1rzu_A Glycogen synthase 1; gl 100.0 1.1E-36 3.8E-41 306.2 28.9 400 53-487 1-482 (485)
12 2qzs_A Glycogen synthase; glyc 100.0 2.8E-36 9.7E-41 303.2 27.9 399 53-485 1-481 (485)
13 2iuy_A Avigt4, glycosyltransfe 100.0 8.2E-36 2.8E-40 286.0 25.4 310 52-484 3-339 (342)
14 3vue_A GBSS-I, granule-bound s 100.0 7.1E-34 2.4E-38 285.6 28.7 227 235-481 235-512 (536)
15 2x0d_A WSAF; GT4 family, trans 100.0 3.6E-33 1.2E-37 272.5 19.9 217 236-482 187-411 (413)
16 2hy7_A Glucuronosyltransferase 100.0 7.8E-31 2.7E-35 256.3 20.3 246 159-482 124-381 (406)
17 1f0k_A MURG, UDP-N-acetylgluco 100.0 1.4E-29 4.8E-34 244.7 23.2 336 52-482 6-359 (364)
18 2vsy_A XCC0866; transferase, g 100.0 3.8E-29 1.3E-33 256.3 25.1 332 50-485 203-564 (568)
19 2xci_A KDO-transferase, 3-deox 100.0 4.6E-29 1.6E-33 240.7 22.3 306 53-462 41-361 (374)
20 3beo_A UDP-N-acetylglucosamine 100.0 1.7E-29 5.8E-34 245.2 19.2 277 149-478 85-374 (375)
21 1vgv_A UDP-N-acetylglucosamine 100.0 7.4E-29 2.5E-33 241.5 20.7 355 53-484 1-380 (384)
22 1uqt_A Alpha, alpha-trehalose- 100.0 1.1E-26 3.7E-31 229.4 28.9 285 159-480 123-454 (482)
23 3qhp_A Type 1 capsular polysac 99.9 8E-27 2.7E-31 198.9 16.9 163 289-472 2-166 (166)
24 3nb0_A Glycogen [starch] synth 99.9 1.1E-25 3.7E-30 222.6 25.2 316 158-484 180-637 (725)
25 3t5t_A Putative glycosyltransf 99.9 2.3E-24 7.9E-29 209.9 34.1 283 160-482 150-475 (496)
26 1v4v_A UDP-N-acetylglucosamine 99.9 1.1E-24 3.6E-29 211.5 27.1 276 149-482 81-366 (376)
27 2bfw_A GLGA glycogen synthase; 99.9 3.7E-25 1.3E-29 194.6 19.1 179 269-465 2-200 (200)
28 2f9f_A First mannosyl transfer 99.9 2.2E-24 7.4E-29 185.6 12.7 152 285-457 19-174 (177)
29 3dzc_A UDP-N-acetylglucosamine 99.9 1.1E-21 3.8E-26 190.4 21.4 346 52-478 25-395 (396)
30 3ot5_A UDP-N-acetylglucosamine 99.9 9.2E-22 3.1E-26 191.1 20.2 352 52-482 27-393 (403)
31 3s2u_A UDP-N-acetylglucosamine 99.9 7.5E-21 2.6E-25 182.6 25.7 340 53-480 3-358 (365)
32 3rhz_A GTF3, nucleotide sugar 99.9 1.6E-21 5.6E-26 183.5 19.8 197 234-473 126-329 (339)
33 3otg_A CALG1; calicheamicin, T 99.9 3E-19 1E-23 175.3 27.8 351 49-479 17-409 (412)
34 2iyf_A OLED, oleandomycin glyc 99.8 1.1E-17 3.9E-22 164.9 24.9 367 52-481 7-402 (430)
35 4fzr_A SSFS6; structural genom 99.8 5.6E-18 1.9E-22 165.3 18.0 153 287-474 226-396 (398)
36 3tsa_A SPNG, NDP-rhamnosyltran 99.8 1.5E-17 5.1E-22 161.9 18.6 161 287-478 217-388 (391)
37 4hwg_A UDP-N-acetylglucosamine 99.8 1.4E-16 4.8E-21 153.1 23.8 272 148-477 83-374 (385)
38 3ia7_A CALG4; glycosysltransfe 99.7 1.1E-15 3.7E-20 149.3 24.6 362 53-479 5-399 (402)
39 3rsc_A CALG2; TDP, enediyne, s 99.7 3E-15 1E-19 146.8 27.5 365 50-479 18-414 (415)
40 3oti_A CALG3; calicheamicin, T 99.7 2.5E-16 8.4E-21 153.6 17.8 160 287-477 231-396 (398)
41 2p6p_A Glycosyl transferase; X 99.7 3.1E-14 1.1E-18 138.0 26.0 156 288-479 210-380 (384)
42 3q3e_A HMW1C-like glycosyltran 99.6 2E-14 6.8E-19 142.2 23.3 269 150-484 340-627 (631)
43 2yjn_A ERYCIII, glycosyltransf 99.6 5.8E-13 2E-17 131.5 24.1 156 288-478 267-435 (441)
44 2iya_A OLEI, oleandomycin glyc 99.5 8.5E-12 2.9E-16 122.5 29.6 202 241-477 209-420 (424)
45 4amg_A Snogd; transferase, pol 99.5 3.1E-12 1.1E-16 124.6 19.8 158 287-475 236-397 (400)
46 4gyw_A UDP-N-acetylglucosamine 99.3 1.2E-09 4.2E-14 113.3 26.7 181 286-483 520-708 (723)
47 1iir_A Glycosyltransferase GTF 99.3 5.2E-10 1.8E-14 109.3 22.7 153 288-482 238-400 (415)
48 3h4t_A Glycosyltransferase GTF 99.3 7.4E-11 2.5E-15 114.8 16.1 155 287-482 220-382 (404)
49 2o6l_A UDP-glucuronosyltransfe 99.2 5.2E-11 1.8E-15 100.9 8.3 133 287-454 20-162 (170)
50 1rrv_A Glycosyltransferase GTF 99.1 2.5E-09 8.6E-14 104.5 20.0 135 288-459 237-382 (416)
51 1l5w_A Maltodextrin phosphoryl 99.0 9.7E-08 3.3E-12 96.8 25.3 238 236-482 408-732 (796)
52 2c4m_A Glycogen phosphorylase; 98.9 1.3E-07 4.6E-12 95.8 22.1 238 236-482 397-721 (796)
53 3hbm_A UDP-sugar hydrolase; PS 98.8 1.5E-07 5.3E-12 85.4 14.7 142 241-408 107-252 (282)
54 2acv_A Triterpene UDP-glucosyl 98.7 0.00026 8.8E-09 69.7 35.4 356 52-444 9-424 (463)
55 2c1x_A UDP-glucose flavonoid 3 98.6 3.8E-05 1.3E-09 75.4 28.5 192 238-461 210-426 (456)
56 2gj4_A Glycogen phosphorylase, 98.6 2.8E-06 9.7E-11 86.6 18.6 194 237-435 433-707 (824)
57 3hbf_A Flavonoid 3-O-glucosylt 98.5 0.00083 2.8E-08 65.4 34.4 367 52-460 13-427 (454)
58 2gt1_A Lipopolysaccharide hept 98.3 5.8E-05 2E-09 70.7 19.6 133 287-444 177-321 (326)
59 1psw_A ADP-heptose LPS heptosy 98.2 6.2E-05 2.1E-09 71.2 18.8 101 288-406 180-286 (348)
60 3l7i_A Teichoic acid biosynthe 98.2 0.00014 4.8E-09 76.0 23.0 214 239-480 476-717 (729)
61 2vch_A Hydroquinone glucosyltr 98.2 0.0027 9.2E-08 62.6 29.4 89 359-460 341-442 (480)
62 3tov_A Glycosyl transferase fa 98.1 0.00011 3.9E-09 69.3 17.3 100 288-406 185-286 (349)
63 2pq6_A UDP-glucuronosyl/UDP-gl 97.7 0.0012 4.3E-08 65.2 17.1 148 288-461 295-453 (482)
64 2jzc_A UDP-N-acetylglucosamine 96.7 0.0013 4.4E-08 57.1 4.5 75 358-443 115-197 (224)
65 1ygp_A Yeast glycogen phosphor 96.3 0.042 1.4E-06 56.2 12.8 145 287-437 598-768 (879)
66 1xv5_A AGT, DNA alpha-glucosyl 93.3 3.1 0.0001 34.6 26.7 211 238-463 131-385 (401)
67 1jg7_A BGT, DNA beta-glucosylt 91.3 5.8 0.0002 33.2 15.6 202 236-463 125-333 (351)
68 1k68_A Phytochrome response re 84.0 5.1 0.00017 30.7 8.4 108 326-444 3-130 (140)
69 4g65_A TRK system potassium up 82.0 38 0.0013 32.6 16.6 34 51-94 2-35 (461)
70 3heb_A Response regulator rece 80.4 7 0.00024 30.6 8.1 109 325-444 4-134 (152)
71 3ilh_A Two component response 80.3 9.9 0.00034 29.3 8.9 113 324-444 8-138 (146)
72 3jte_A Response regulator rece 80.3 7.8 0.00027 29.9 8.2 107 325-444 3-122 (143)
73 3cg4_A Response regulator rece 79.3 19 0.00064 27.5 10.3 108 324-444 6-126 (142)
74 2qvg_A Two component response 78.7 16 0.00055 27.9 9.7 109 325-444 7-134 (143)
75 3grc_A Sensor protein, kinase; 78.1 16 0.00053 27.9 9.4 107 325-444 6-126 (140)
76 2zay_A Response regulator rece 77.2 7.5 0.00025 30.2 7.3 108 324-444 7-127 (147)
77 1k66_A Phytochrome response re 76.3 11 0.00036 29.1 8.0 109 325-444 6-137 (149)
78 1i3c_A Response regulator RCP1 75.3 12 0.00039 29.2 7.9 110 324-444 7-136 (149)
79 3h5i_A Response regulator/sens 73.5 28 0.00095 26.5 11.1 107 325-444 5-123 (140)
80 3h1g_A Chemotaxis protein CHEY 73.4 13 0.00043 28.1 7.5 108 325-444 5-126 (129)
81 3kht_A Response regulator; PSI 73.3 15 0.00051 28.2 8.0 109 325-444 5-127 (144)
82 3hzh_A Chemotaxis response reg 72.5 11 0.00036 29.8 7.1 106 326-444 37-156 (157)
83 1qkk_A DCTD, C4-dicarboxylate 70.4 19 0.00065 28.1 8.2 107 325-444 3-120 (155)
84 3kcn_A Adenylate cyclase homol 70.3 25 0.00086 27.2 8.9 109 325-444 4-122 (151)
85 2qzj_A Two-component response 70.0 13 0.00043 28.4 6.9 107 325-444 4-120 (136)
86 4e7p_A Response regulator; DNA 69.9 17 0.00057 28.2 7.7 109 325-444 20-139 (150)
87 3t6k_A Response regulator rece 69.4 25 0.00087 26.6 8.5 107 325-444 4-123 (136)
88 1dbw_A Transcriptional regulat 69.1 30 0.001 25.6 8.8 107 325-444 3-120 (126)
89 3gt7_A Sensor protein; structu 69.0 22 0.00074 27.8 8.2 107 325-444 7-126 (154)
90 2j48_A Two-component sensor ki 69.0 20 0.00069 25.9 7.7 105 327-444 3-117 (119)
91 2rdm_A Response regulator rece 68.4 34 0.0012 25.4 10.6 108 325-444 5-122 (132)
92 3hdv_A Response regulator; PSI 67.6 30 0.001 26.0 8.6 107 325-444 7-126 (136)
93 3eul_A Possible nitrate/nitrit 67.3 21 0.00071 27.7 7.8 110 324-444 14-134 (152)
94 1rcu_A Conserved hypothetical 67.0 3.4 0.00012 34.5 2.9 73 369-443 111-193 (195)
95 2gkg_A Response regulator homo 66.9 29 0.001 25.5 8.3 105 326-444 6-124 (127)
96 3hv2_A Response regulator/HD d 66.9 33 0.0011 26.6 8.9 110 325-444 14-132 (153)
97 2qsj_A DNA-binding response re 66.5 26 0.00088 27.2 8.2 108 325-444 3-123 (154)
98 3gl9_A Response regulator; bet 66.5 31 0.0011 25.5 8.3 105 327-444 4-121 (122)
99 1jbe_A Chemotaxis protein CHEY 66.0 38 0.0013 25.0 9.0 108 325-444 4-124 (128)
100 3i42_A Response regulator rece 65.6 38 0.0013 25.0 8.9 107 325-444 3-121 (127)
101 2b4a_A BH3024; flavodoxin-like 65.2 42 0.0014 25.3 9.7 107 324-444 14-130 (138)
102 3to5_A CHEY homolog; alpha(5)b 65.1 37 0.0013 26.1 8.5 109 324-444 11-132 (134)
103 2f62_A Nucleoside 2-deoxyribos 65.1 52 0.0018 26.3 9.7 37 371-407 62-105 (161)
104 3cnb_A DNA-binding response re 64.9 42 0.0015 25.3 9.2 108 325-444 8-129 (143)
105 3lkv_A Uncharacterized conserv 64.3 79 0.0027 28.1 14.7 155 236-407 64-227 (302)
106 2rjn_A Response regulator rece 64.0 30 0.001 26.8 8.1 111 324-444 6-125 (154)
107 3c97_A Signal transduction his 64.0 45 0.0015 25.2 10.3 106 326-444 11-129 (140)
108 3rfo_A Methionyl-tRNA formyltr 63.7 44 0.0015 30.3 9.9 36 50-95 2-37 (317)
109 3n53_A Response regulator rece 63.6 45 0.0016 25.1 11.0 105 326-444 4-121 (140)
110 1pno_A NAD(P) transhydrogenase 63.0 57 0.0019 26.1 9.0 120 302-442 38-178 (180)
111 4fyk_A Deoxyribonucleoside 5'- 62.9 32 0.0011 27.3 7.6 68 371-444 63-141 (152)
112 3hdg_A Uncharacterized protein 62.5 26 0.00089 26.4 7.3 107 325-444 7-124 (137)
113 3lua_A Response regulator rece 62.1 11 0.00037 28.9 5.0 107 325-444 4-126 (140)
114 3nhm_A Response regulator; pro 61.9 47 0.0016 24.7 10.4 108 325-444 4-121 (133)
115 1djl_A Transhydrogenase DIII; 61.3 64 0.0022 26.5 9.1 122 302-444 60-202 (207)
116 3c3m_A Response regulator rece 61.2 50 0.0017 24.9 9.6 108 326-444 4-122 (138)
117 1d4o_A NADP(H) transhydrogenas 60.9 63 0.0022 25.9 9.4 123 301-444 36-179 (184)
118 4dad_A Putative pilus assembly 60.5 21 0.0007 27.5 6.4 108 325-444 20-140 (146)
119 1fy2_A Aspartyl dipeptidase; s 60.4 52 0.0018 28.1 9.4 93 304-408 17-121 (229)
120 1mb3_A Cell division response 59.7 48 0.0017 24.2 8.8 105 327-444 3-120 (124)
121 1s8n_A Putative antiterminator 59.6 71 0.0024 26.1 10.1 106 326-444 14-130 (205)
122 3uhf_A Glutamate racemase; str 59.5 56 0.0019 28.9 9.5 38 49-94 21-58 (274)
123 3r0j_A Possible two component 59.5 50 0.0017 28.3 9.4 107 325-444 23-140 (250)
124 3tqq_A Methionyl-tRNA formyltr 59.4 50 0.0017 29.9 9.4 33 52-94 2-34 (314)
125 2r25_B Osmosensing histidine p 59.2 49 0.0017 24.8 8.4 107 326-444 3-126 (133)
126 2qv0_A Protein MRKE; structura 59.0 56 0.0019 24.7 9.5 108 325-444 9-126 (143)
127 1zgz_A Torcad operon transcrip 59.0 49 0.0017 24.1 8.4 105 327-444 4-118 (122)
128 3cg0_A Response regulator rece 58.9 55 0.0019 24.5 9.0 108 324-444 8-127 (140)
129 3en0_A Cyanophycinase; serine 58.7 68 0.0023 28.6 10.0 109 292-408 29-153 (291)
130 3m6m_D Sensory/regulatory prot 58.3 49 0.0017 25.3 8.3 108 324-444 13-135 (143)
131 3q0i_A Methionyl-tRNA formyltr 58.1 64 0.0022 29.2 9.9 33 52-94 7-39 (318)
132 3lte_A Response regulator; str 57.9 55 0.0019 24.2 9.1 107 325-444 6-124 (132)
133 4f3y_A DHPR, dihydrodipicolina 57.8 6.7 0.00023 34.8 3.2 44 368-411 65-108 (272)
134 3f6c_A Positive transcription 57.3 56 0.0019 24.3 8.4 106 326-444 2-119 (134)
135 3crn_A Response regulator rece 56.8 58 0.002 24.2 8.6 106 326-444 4-120 (132)
136 2qxy_A Response regulator; reg 56.6 37 0.0013 25.7 7.3 107 325-444 4-120 (142)
137 3ehd_A Uncharacterized conserv 56.5 34 0.0012 27.4 6.9 72 372-443 65-161 (162)
138 3f6p_A Transcriptional regulat 55.8 53 0.0018 24.0 7.9 105 327-444 4-118 (120)
139 3u80_A 3-dehydroquinate dehydr 55.7 43 0.0015 26.3 7.0 94 344-443 36-146 (151)
140 1vl6_A Malate oxidoreductase; 55.6 28 0.00096 32.4 7.1 37 368-405 255-291 (388)
141 2l2q_A PTS system, cellobiose- 55.4 59 0.002 23.9 8.6 77 325-407 4-83 (109)
142 1e2b_A Enzyme IIB-cellobiose; 55.4 14 0.00048 27.3 4.2 52 328-384 7-58 (106)
143 2qr3_A Two-component system re 55.0 34 0.0012 25.8 6.8 107 325-444 3-125 (140)
144 2fsv_C NAD(P) transhydrogenase 54.9 70 0.0024 26.2 8.3 120 302-442 61-201 (203)
145 1p6q_A CHEY2; chemotaxis, sign 54.5 49 0.0017 24.4 7.6 108 325-444 6-126 (129)
146 2pln_A HP1043, response regula 54.4 60 0.002 24.3 8.2 105 324-444 17-132 (137)
147 3lzd_A DPH2; diphthamide biosy 54.4 7.8 0.00027 36.0 3.2 59 325-385 265-323 (378)
148 2pl1_A Transcriptional regulat 54.1 59 0.002 23.5 8.6 105 327-444 2-117 (121)
149 1srr_A SPO0F, sporulation resp 54.0 60 0.0021 23.7 8.0 106 326-444 4-120 (124)
150 3cfy_A Putative LUXO repressor 53.6 52 0.0018 24.8 7.7 105 327-444 6-121 (137)
151 3e9m_A Oxidoreductase, GFO/IDH 53.3 73 0.0025 28.8 9.7 70 324-408 28-99 (330)
152 3a10_A Response regulator; pho 53.2 60 0.002 23.3 10.0 104 327-443 3-115 (116)
153 1e5d_A Rubredoxin\:oxygen oxid 52.7 78 0.0027 29.5 10.1 99 303-406 235-342 (402)
154 2jfz_A Glutamate racemase; cel 52.4 50 0.0017 28.7 8.0 34 53-94 1-34 (255)
155 3b2n_A Uncharacterized protein 52.0 62 0.0021 24.1 7.9 108 326-444 4-122 (133)
156 1gq2_A Malic enzyme; oxidoredu 51.8 68 0.0023 31.3 9.2 92 307-405 269-392 (555)
157 1dcf_A ETR1 protein; beta-alph 51.6 43 0.0015 25.1 6.8 107 325-444 7-128 (136)
158 3n8k_A 3-dehydroquinate dehydr 51.4 49 0.0017 26.5 6.8 95 344-444 60-168 (172)
159 3nv9_A Malic enzyme; rossmann 51.0 38 0.0013 32.3 7.1 36 369-405 287-324 (487)
160 1ys7_A Transcriptional regulat 50.9 1.1E+02 0.0037 25.5 11.7 107 325-444 7-124 (233)
161 3ijp_A DHPR, dihydrodipicolina 50.5 8.3 0.00029 34.5 2.6 44 368-411 80-123 (288)
162 2i2x_B MTAC, methyltransferase 50.4 1.1E+02 0.0037 26.6 9.9 40 400-444 204-243 (258)
163 2h1q_A Hypothetical protein; Z 50.2 19 0.00066 31.7 4.9 75 366-441 176-253 (270)
164 2iz6_A Molybdenum cofactor car 50.0 8.5 0.00029 31.5 2.4 69 372-444 103-173 (176)
165 2bru_C NAD(P) transhydrogenase 49.3 59 0.002 26.1 6.9 119 302-441 45-184 (186)
166 1fmt_A Methionyl-tRNA FMet for 49.0 90 0.0031 28.2 9.3 34 51-94 2-35 (314)
167 2gwr_A DNA-binding response re 48.6 86 0.0029 26.5 9.0 106 326-444 6-121 (238)
168 3npg_A Uncharacterized DUF364 48.3 70 0.0024 27.8 8.1 70 372-441 160-232 (249)
169 1mvo_A PHOP response regulator 48.2 81 0.0028 23.4 9.6 106 326-444 4-120 (136)
170 3mm4_A Histidine kinase homolo 48.1 55 0.0019 27.1 7.5 108 325-444 61-195 (206)
171 1o0s_A NAD-ME, NAD-dependent m 48.1 64 0.0022 31.8 8.4 92 307-405 307-430 (605)
172 3eod_A Protein HNR; response r 48.0 63 0.0022 23.8 7.3 108 324-444 6-125 (130)
173 2ayx_A Sensor kinase protein R 47.5 1.2E+02 0.0041 26.0 9.9 106 326-444 130-246 (254)
174 3lwz_A 3-dehydroquinate dehydr 47.3 53 0.0018 25.8 6.3 95 344-444 39-147 (153)
175 3cu5_A Two component transcrip 46.6 91 0.0031 23.5 10.7 107 327-444 4-122 (141)
176 3auf_A Glycinamide ribonucleot 46.6 1.4E+02 0.0047 25.5 10.5 37 50-92 20-56 (229)
177 1xhf_A DYE resistance, aerobic 46.6 81 0.0028 22.9 8.3 106 326-444 4-119 (123)
178 2ywr_A Phosphoribosylglycinami 46.6 92 0.0032 26.2 8.5 34 53-92 2-35 (216)
179 1p2f_A Response regulator; DRR 46.5 35 0.0012 28.5 6.0 104 327-444 4-116 (220)
180 2jba_A Phosphate regulon trans 46.3 40 0.0014 24.8 5.8 105 327-444 4-121 (127)
181 4had_A Probable oxidoreductase 46.3 38 0.0013 31.0 6.6 70 324-408 47-118 (350)
182 3q2i_A Dehydrogenase; rossmann 46.1 1.7E+02 0.0058 26.6 11.1 37 50-94 11-47 (354)
183 3glr_A NAD-dependent deacetyla 45.5 41 0.0014 29.9 6.3 99 356-460 174-279 (285)
184 1kgs_A DRRD, DNA binding respo 45.2 1.3E+02 0.0044 24.9 9.5 106 326-444 3-119 (225)
185 2bln_A Protein YFBG; transfera 44.8 95 0.0032 27.9 8.7 32 53-94 1-32 (305)
186 3kto_A Response regulator rece 44.4 24 0.00082 26.7 4.2 107 325-444 6-125 (136)
187 2a9o_A Response regulator; ess 44.3 85 0.0029 22.5 8.4 105 327-444 3-117 (120)
188 1ydw_A AX110P-like protein; st 44.1 89 0.003 28.7 8.8 72 324-407 29-102 (362)
189 1tlt_A Putative oxidoreductase 43.9 36 0.0012 30.7 6.0 67 324-407 29-96 (319)
190 1dc7_A NTRC, nitrogen regulati 43.7 53 0.0018 23.9 6.1 105 327-444 5-120 (124)
191 2ixa_A Alpha-N-acetylgalactosa 43.7 1.7E+02 0.0058 27.7 11.0 78 324-407 43-122 (444)
192 3cz5_A Two-component response 43.7 67 0.0023 24.6 7.0 107 325-444 5-124 (153)
193 1qo0_D AMIR; binding protein, 43.3 1.1E+02 0.0038 24.7 8.6 105 324-444 11-124 (196)
194 1yio_A Response regulatory pro 43.3 1.3E+02 0.0045 24.4 9.6 107 325-444 4-121 (208)
195 3snk_A Response regulator CHEY 42.9 28 0.00095 26.3 4.4 107 325-444 14-132 (135)
196 1gqo_A Dehydroquinase; dehydra 42.6 91 0.0031 24.2 6.9 96 342-443 30-139 (143)
197 1h05_A 3-dehydroquinate dehydr 42.0 1E+02 0.0034 24.1 7.1 96 342-443 32-141 (146)
198 3rqi_A Response regulator prot 41.3 43 0.0015 27.0 5.6 107 325-444 7-124 (184)
199 1xvl_A Mn transporter, MNTC pr 41.3 71 0.0024 28.9 7.4 105 368-478 86-198 (321)
200 2uyg_A 3-dehydroquinate dehydr 40.4 1.3E+02 0.0045 23.5 8.2 98 341-444 28-140 (149)
201 1xmp_A PURE, phosphoribosylami 39.9 1.2E+02 0.0042 24.3 7.5 79 326-408 13-97 (170)
202 3ec7_A Putative dehydrogenase; 39.6 1.9E+02 0.0065 26.4 10.3 36 51-94 22-57 (357)
203 2ki0_A DS119; beta-alpha-beta, 39.5 6.1 0.00021 21.1 -0.0 32 325-363 4-35 (36)
204 3rc1_A Sugar 3-ketoreductase; 39.5 41 0.0014 30.9 5.7 93 288-408 26-121 (350)
205 2lpm_A Two-component response 39.1 90 0.0031 23.5 6.6 107 325-443 8-120 (123)
206 3n0r_A Response regulator; sig 38.3 2.1E+02 0.007 25.2 12.3 107 325-444 160-276 (286)
207 3l5o_A Uncharacterized protein 38.3 11 0.00038 33.2 1.4 74 366-440 176-252 (270)
208 1tmy_A CHEY protein, TMY; chem 38.3 1.1E+02 0.0037 22.0 8.3 105 327-443 4-119 (120)
209 3uuw_A Putative oxidoreductase 38.1 34 0.0011 30.7 4.8 68 324-408 30-98 (308)
210 3q9s_A DNA-binding response re 38.1 95 0.0033 26.6 7.6 106 326-444 38-153 (249)
211 3l4e_A Uncharacterized peptida 38.1 64 0.0022 27.0 6.1 80 325-407 27-120 (206)
212 3tqr_A Phosphoribosylglycinami 38.1 1.8E+02 0.0062 24.4 10.4 38 50-94 3-40 (215)
213 3dty_A Oxidoreductase, GFO/IDH 38.0 1.3E+02 0.0044 28.1 9.0 58 344-407 52-116 (398)
214 3ty2_A 5'-nucleotidase SURE; s 37.8 1.3E+02 0.0043 26.3 8.0 39 50-96 9-48 (261)
215 2bw0_A 10-FTHFDH, 10-formyltet 37.8 1.9E+02 0.0065 26.2 9.7 27 51-85 21-47 (329)
216 2a9f_A Putative malic enzyme ( 37.7 41 0.0014 31.5 5.1 36 369-405 251-286 (398)
217 2d1p_A TUSD, hypothetical UPF0 37.4 33 0.0011 26.7 3.9 42 50-91 10-52 (140)
218 2ohh_A Type A flavoprotein FPR 37.3 1.3E+02 0.0045 27.9 9.0 63 344-406 275-349 (404)
219 3ug7_A Arsenical pump-driving 37.1 61 0.0021 29.7 6.4 28 67-96 38-65 (349)
220 3geb_A EYES absent homolog 2; 36.7 1.3E+02 0.0044 26.0 7.6 54 308-378 217-270 (274)
221 3kip_A 3-dehydroquinase, type 36.3 88 0.003 24.9 6.1 82 359-444 61-157 (167)
222 1uqr_A 3-dehydroquinate dehydr 36.2 94 0.0032 24.5 6.2 96 342-443 31-140 (154)
223 1u11_A PURE (N5-carboxyaminoim 35.6 1.7E+02 0.0058 23.8 7.8 67 341-408 35-107 (182)
224 3db2_A Putative NADPH-dependen 35.6 1.4E+02 0.0047 27.3 8.6 69 324-408 28-98 (354)
225 3da8_A Probable 5'-phosphoribo 35.3 91 0.0031 26.3 6.6 40 50-96 10-49 (215)
226 1q14_A HST2 protein; histone d 35.2 1.4E+02 0.0049 27.4 8.4 79 374-458 217-299 (361)
227 2oqr_A Sensory transduction pr 34.6 99 0.0034 25.8 7.1 106 326-444 5-120 (230)
228 1zh8_A Oxidoreductase; TM0312, 34.5 2.6E+02 0.0088 25.2 10.3 38 50-94 16-53 (340)
229 2ixd_A LMBE-related protein; h 34.4 1.6E+02 0.0055 25.2 8.3 40 52-94 3-42 (242)
230 3ist_A Glutamate racemase; str 34.4 66 0.0023 28.3 5.8 34 53-94 6-39 (269)
231 1b73_A Glutamate racemase; iso 34.3 1.7E+02 0.0057 25.2 8.5 34 53-94 1-34 (254)
232 2hy5_A Putative sulfurtransfer 34.2 37 0.0013 25.9 3.7 38 53-90 1-39 (130)
233 1toa_A Tromp-1, protein (perip 33.7 2.4E+02 0.0081 25.3 9.6 107 368-479 79-192 (313)
234 2dun_A POL MU, DNA polymerase 33.0 40 0.0014 25.9 3.6 72 324-405 12-101 (133)
235 1eiw_A Hypothetical protein MT 33.0 83 0.0028 23.3 5.3 70 372-444 34-109 (111)
236 1a04_A Nitrate/nitrite respons 32.9 1.6E+02 0.0054 24.1 8.0 108 325-444 5-124 (215)
237 3evn_A Oxidoreductase, GFO/IDH 32.7 79 0.0027 28.6 6.4 41 368-408 57-99 (329)
238 3hgm_A Universal stress protei 32.1 1.6E+02 0.0055 22.1 8.1 61 345-405 74-146 (147)
239 1gtz_A 3-dehydroquinate dehydr 31.5 1.3E+02 0.0044 23.8 6.3 95 343-443 37-146 (156)
240 3euw_A MYO-inositol dehydrogen 31.3 1.3E+02 0.0044 27.3 7.7 69 324-408 27-97 (344)
241 1uan_A Hypothetical protein TT 31.2 1.6E+02 0.0056 24.8 7.7 18 149-166 85-102 (227)
242 3mz0_A Inositol 2-dehydrogenas 30.9 3E+02 0.01 24.8 10.8 35 52-94 2-36 (344)
243 1zh2_A KDP operon transcriptio 30.8 1.5E+02 0.005 21.2 7.3 105 327-444 3-117 (121)
244 3oqb_A Oxidoreductase; structu 30.6 1.1E+02 0.0038 28.2 7.2 56 344-407 57-114 (383)
245 3ecs_A Translation initiation 30.3 3E+02 0.01 24.7 11.4 98 289-406 122-229 (315)
246 3v5n_A Oxidoreductase; structu 30.2 1E+02 0.0035 29.0 6.9 59 344-408 77-142 (417)
247 4gmf_A Yersiniabactin biosynth 30.1 40 0.0014 31.4 3.9 92 288-408 6-102 (372)
248 3moi_A Probable dehydrogenase; 29.7 87 0.003 29.1 6.3 69 324-408 26-96 (387)
249 3rc1_A Sugar 3-ketoreductase; 29.4 2.7E+02 0.0091 25.3 9.5 34 51-93 26-60 (350)
250 1dz3_A Stage 0 sporulation pro 29.0 1.5E+02 0.0052 21.6 6.6 107 326-444 3-122 (130)
251 3m2t_A Probable dehydrogenase; 28.9 47 0.0016 30.6 4.2 41 368-408 58-100 (359)
252 1vs1_A 3-deoxy-7-phosphoheptul 28.9 3E+02 0.01 24.2 10.2 104 296-410 43-155 (276)
253 2phj_A 5'-nucleotidase SURE; S 28.8 2.7E+02 0.0093 24.0 8.6 36 53-96 2-38 (251)
254 1s5p_A NAD-dependent deacetyla 28.8 1.5E+02 0.0052 25.2 7.1 54 357-410 146-204 (235)
255 3lp6_A Phosphoribosylaminoimid 28.7 2.3E+02 0.0079 22.8 7.8 77 328-408 11-93 (174)
256 2nzw_A Alpha1,3-fucosyltransfe 28.7 1.1E+02 0.0039 28.2 6.5 79 369-455 224-309 (371)
257 4hkt_A Inositol 2-dehydrogenas 28.6 1E+02 0.0036 27.7 6.5 67 324-408 26-95 (331)
258 3mz0_A Inositol 2-dehydrogenas 28.5 85 0.0029 28.5 5.9 71 324-408 26-98 (344)
259 2pq6_A UDP-glucuronosyl/UDP-gl 28.4 2.5E+02 0.0086 26.8 9.5 38 52-94 8-45 (482)
260 1ycg_A Nitric oxide reductase; 28.1 3.5E+02 0.012 24.8 12.3 100 302-406 233-341 (398)
261 3on1_A BH2414 protein; structu 27.9 85 0.0029 22.6 4.6 47 325-378 34-80 (101)
262 3kuu_A Phosphoribosylaminoimid 27.9 2.2E+02 0.0075 22.9 7.2 67 341-408 26-98 (174)
263 1pj3_A NAD-dependent malic enz 27.8 1.6E+02 0.0056 28.8 7.6 38 368-405 355-397 (564)
264 3kb6_A D-lactate dehydrogenase 27.7 3.2E+02 0.011 24.7 9.5 43 369-411 187-234 (334)
265 3iqw_A Tail-anchored protein t 27.4 2.2E+02 0.0075 25.8 8.3 41 52-97 15-56 (334)
266 3moi_A Probable dehydrogenase; 27.4 3.7E+02 0.012 24.7 10.2 36 151-186 56-93 (387)
267 3fdx_A Putative filament prote 26.7 1.5E+02 0.005 22.3 6.2 62 344-406 69-142 (143)
268 1f8y_A Nucleoside 2-deoxyribos 26.4 1.6E+02 0.0055 23.3 6.3 37 372-408 74-114 (157)
269 4fb5_A Probable oxidoreductase 26.3 56 0.0019 30.3 4.3 101 288-408 24-126 (393)
270 1mjh_A Protein (ATP-binding do 26.2 2.2E+02 0.0076 21.8 7.9 63 344-408 86-159 (162)
271 3rg8_A Phosphoribosylaminoimid 26.1 2.5E+02 0.0084 22.3 8.1 77 328-408 6-89 (159)
272 3trh_A Phosphoribosylaminoimid 26.0 2.5E+02 0.0087 22.5 7.6 77 328-408 10-92 (169)
273 3tqq_A Methionyl-tRNA formyltr 26.0 1.5E+02 0.0051 26.7 6.8 39 344-384 48-88 (314)
274 3tml_A 2-dehydro-3-deoxyphosph 25.9 3.4E+02 0.012 24.0 8.9 101 302-409 28-140 (288)
275 3g8r_A Probable spore coat pol 25.8 2.9E+02 0.0098 25.3 8.6 62 343-408 80-143 (350)
276 2khz_A C-MYC-responsive protei 25.7 63 0.0021 25.9 3.8 35 372-407 73-110 (165)
277 3v7e_A Ribosome-associated pro 25.3 1.7E+02 0.0057 20.1 6.2 46 324-376 26-71 (82)
278 3luf_A Two-component system re 25.2 3.2E+02 0.011 23.3 10.8 108 324-444 123-244 (259)
279 3klo_A Transcriptional regulat 25.2 2E+02 0.0067 23.8 7.3 108 325-444 7-128 (225)
280 2hqr_A Putative transcriptiona 25.2 1.6E+02 0.0053 24.3 6.6 101 328-444 3-114 (223)
281 3giu_A Pyrrolidone-carboxylate 25.1 1.5E+02 0.0052 24.9 6.3 30 51-82 2-32 (215)
282 3miz_A Putative transcriptiona 25.1 3.4E+02 0.011 23.5 14.3 55 297-364 176-232 (301)
283 3idf_A USP-like protein; unive 24.9 2.1E+02 0.0073 21.2 9.9 62 344-406 69-137 (138)
284 3hly_A Flavodoxin-like domain; 24.8 2.5E+02 0.0086 21.9 9.9 67 344-410 19-92 (161)
285 1zco_A 2-dehydro-3-deoxyphosph 24.5 3.5E+02 0.012 23.5 9.3 103 297-410 29-140 (262)
286 1o4v_A Phosphoribosylaminoimid 24.5 2.9E+02 0.0098 22.5 7.8 79 326-408 15-99 (183)
287 1p9l_A Dihydrodipicolinate red 24.3 2.3E+02 0.008 24.3 7.5 42 369-410 37-79 (245)
288 2ywx_A Phosphoribosylaminoimid 24.2 2.5E+02 0.0087 22.2 6.8 78 328-409 3-83 (157)
289 3e18_A Oxidoreductase; dehydro 24.0 4.1E+02 0.014 24.1 9.9 41 368-408 55-97 (359)
290 1s2d_A Purine trans deoxyribos 24.0 2.6E+02 0.009 22.3 7.2 35 372-407 77-116 (167)
291 3cea_A MYO-inositol 2-dehydrog 23.9 3.9E+02 0.013 23.9 11.1 36 51-94 7-42 (346)
292 1meo_A Phosophoribosylglycinam 23.8 3.2E+02 0.011 22.8 9.3 17 151-167 71-87 (209)
293 3ezy_A Dehydrogenase; structur 23.8 1.4E+02 0.0046 27.1 6.3 69 324-408 25-96 (344)
294 3ec7_A Putative dehydrogenase; 23.8 1.9E+02 0.0066 26.3 7.4 70 324-408 47-119 (357)
295 3mt0_A Uncharacterized protein 23.8 3.6E+02 0.012 23.3 12.3 96 306-408 22-128 (290)
296 4grd_A N5-CAIR mutase, phospho 23.7 2.7E+02 0.0093 22.4 7.0 14 394-407 84-97 (173)
297 3ors_A N5-carboxyaminoimidazol 23.6 2.8E+02 0.0096 22.1 7.7 77 328-408 7-89 (163)
298 1ny5_A Transcriptional regulat 23.5 3.2E+02 0.011 25.2 8.9 105 327-444 2-117 (387)
299 3ujp_A Mn transporter subunit; 23.3 2.8E+02 0.0095 24.8 8.1 108 366-478 70-184 (307)
300 2cok_A Poly [ADP-ribose] polym 23.2 54 0.0018 24.4 2.7 67 324-407 12-78 (113)
301 3db2_A Putative NADPH-dependen 23.2 4.1E+02 0.014 23.9 10.3 34 52-94 5-38 (354)
302 3e9m_A Oxidoreductase, GFO/IDH 23.1 4E+02 0.014 23.7 10.2 35 51-94 4-38 (330)
303 3rot_A ABC sugar transporter, 23.0 3.7E+02 0.013 23.2 9.7 34 376-409 61-95 (297)
304 4b4k_A N5-carboxyaminoimidazol 23.0 3E+02 0.01 22.3 7.7 13 396-408 96-108 (181)
305 3u3x_A Oxidoreductase; structu 22.9 3E+02 0.01 25.1 8.6 93 289-408 26-120 (361)
306 1w25_A Stalked-cell differenti 22.8 4E+02 0.014 25.0 9.8 105 327-444 3-120 (459)
307 2bw0_A 10-FTHFDH, 10-formyltet 22.7 3.4E+02 0.012 24.5 8.6 15 391-405 139-153 (329)
308 3fwz_A Inner membrane protein 22.6 2.4E+02 0.0081 21.3 6.7 103 325-444 30-138 (140)
309 3p9x_A Phosphoribosylglycinami 22.6 3.4E+02 0.012 22.7 7.9 86 52-165 2-87 (211)
310 3euw_A MYO-inositol dehydrogen 22.5 4.2E+02 0.014 23.7 10.7 34 52-94 4-37 (344)
311 3pp8_A Glyoxylate/hydroxypyruv 22.5 3.6E+02 0.012 24.1 8.6 32 52-91 3-34 (315)
312 3l6u_A ABC-type sugar transpor 22.3 3.7E+02 0.013 23.0 10.6 34 376-409 64-98 (293)
313 2k6g_A Replication factor C su 22.3 2.3E+02 0.008 20.7 7.3 64 324-405 34-97 (109)
314 3q2i_A Dehydrogenase; rossmann 22.3 1.2E+02 0.0041 27.7 5.6 93 288-408 12-107 (354)
315 2dum_A Hypothetical protein PH 22.3 2.8E+02 0.0094 21.5 8.4 46 366-411 105-159 (170)
316 3kcq_A Phosphoribosylglycinami 22.3 3.5E+02 0.012 22.7 9.7 17 151-167 74-90 (215)
317 2lnd_A De novo designed protei 22.2 18 0.00061 24.6 -0.1 83 341-444 13-100 (112)
318 3oow_A Phosphoribosylaminoimid 22.2 3E+02 0.01 21.9 7.7 78 327-408 8-91 (166)
319 3v7q_A Probable ribosomal prot 22.1 1.1E+02 0.0038 22.0 4.3 47 325-378 35-81 (101)
320 1l0b_A BRCA1; TANDEM-BRCT, thr 22.0 2.3E+02 0.0077 23.7 7.0 66 324-406 6-74 (229)
321 3dfz_A SIRC, precorrin-2 dehyd 22.0 3.6E+02 0.012 22.7 12.2 83 307-411 43-126 (223)
322 3q0i_A Methionyl-tRNA formyltr 22.0 2.3E+02 0.0078 25.5 7.2 37 345-383 54-92 (318)
323 3rfo_A Methionyl-tRNA formyltr 21.7 3.1E+02 0.01 24.6 8.0 12 345-356 51-62 (317)
324 2c4w_A 3-dehydroquinate dehydr 21.6 2.6E+02 0.0087 22.5 6.4 99 344-444 41-152 (176)
325 3out_A Glutamate racemase; str 21.6 3.8E+02 0.013 23.2 8.5 34 53-94 8-41 (268)
326 1t35_A Hypothetical protein YV 21.5 66 0.0022 26.6 3.2 73 368-442 89-179 (191)
327 3gi1_A LBP, laminin-binding pr 21.5 2.3E+02 0.0079 24.9 7.1 110 366-478 50-175 (286)
328 4gi5_A Quinone reductase; prot 21.5 62 0.0021 28.7 3.2 39 50-89 20-59 (280)
329 2wqp_A Polysialic acid capsule 21.4 2.8E+02 0.0096 25.3 7.6 66 341-410 91-158 (349)
330 2o1e_A YCDH; alpha-beta protei 21.4 3.3E+02 0.011 24.3 8.2 107 368-479 62-187 (312)
331 3inp_A D-ribulose-phosphate 3- 21.3 1.2E+02 0.0043 26.1 5.1 11 240-250 108-118 (246)
332 3hh8_A Metal ABC transporter s 21.2 2.4E+02 0.0082 25.0 7.2 96 366-463 56-164 (294)
333 1vr6_A Phospho-2-dehydro-3-deo 21.1 4.8E+02 0.016 23.8 10.0 105 295-410 110-223 (350)
334 4had_A Probable oxidoreductase 21.1 4.5E+02 0.015 23.5 10.3 36 151-186 78-115 (350)
335 3fs2_A 2-dehydro-3-deoxyphosph 20.9 4.4E+02 0.015 23.4 9.3 102 301-409 51-164 (298)
336 3vnd_A TSA, tryptophan synthas 20.8 2.3E+02 0.0079 24.7 6.8 118 303-441 111-244 (267)
337 3t8y_A CHEB, chemotaxis respon 20.8 2.9E+02 0.0099 21.2 8.9 109 325-444 25-154 (164)
338 1ybh_A Acetolactate synthase, 20.6 5.6E+02 0.019 25.2 10.5 108 327-444 217-342 (590)
339 1q1a_A HST2 protein; ternary c 20.5 2.5E+02 0.0084 24.8 7.1 74 374-453 209-286 (289)
340 1vli_A Spore coat polysacchari 20.5 2.7E+02 0.0092 25.8 7.4 66 341-410 101-168 (385)
341 2nx2_A Hypothetical protein YP 20.4 3.3E+02 0.011 22.0 7.2 109 301-418 52-178 (181)
342 4ax2_A RAP1B; toxin, resistanc 20.3 2.5E+02 0.0084 21.8 5.9 50 434-483 41-92 (142)
343 2pju_A Propionate catabolism o 20.3 3.8E+02 0.013 22.6 7.8 56 305-375 93-148 (225)
344 3av3_A Phosphoribosylglycinami 20.3 3.8E+02 0.013 22.3 10.7 36 53-94 4-39 (212)
345 3fg9_A Protein of universal st 20.3 2.9E+02 0.0099 21.0 7.3 61 344-406 82-155 (156)
No 1
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=4.9e-40 Score=326.42 Aligned_cols=390 Identities=15% Similarity=0.149 Sum_probs=275.0
Q ss_pred cccccEEEEeccCCCC--------CCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeE
Q psy15555 49 YNVLKTVAFFHPYCNA--------GGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVIN 120 (488)
Q Consensus 49 ~~~~~rI~~~~~~~~~--------~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 120 (488)
...+|||++++....+ .||.++++..++++|.++| ++|.+++...+.... . ....... +.
T Consensus 17 ~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G--~~V~v~~~~~~~~~~--------~-~~~~~~~-v~ 84 (438)
T 3c48_A 17 RGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQG--IEVDIYTRATRPSQG--------E-IVRVAEN-LR 84 (438)
T ss_dssp --CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTT--CEEEEEEECCCGGGC--------S-EEEEETT-EE
T ss_pred CcchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcC--CEEEEEecCCCCCCc--------c-cccccCC-eE
Confidence 3456999999865543 4788999999999999985 455555443221100 0 0011133 66
Q ss_pred EEEeeccceeeccCchhHHHHHHHHHHHHHHHHH-hhhc-CCcEEEecCCccchhh-hhhhhCCCeeEEEEeCCccchHH
Q psy15555 121 FVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEA-LLSF-QPDIYIDTMGYAFTYP-LFSYIGGSKVACYIHYPTITKEM 197 (488)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~-~pDiii~~~~~~~~~~-~~~~~~~~~~v~~~h~p~~~~d~ 197 (488)
+..++...............+.. ......+. +++. +||+||.+......+. .+....++|++.+.|......
T Consensus 85 v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~-- 159 (438)
T 3c48_A 85 VINIAAGPYEGLSKEELPTQLAA---FTGGMLSFTRREKVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVK-- 159 (438)
T ss_dssp EEEECCSCSSSCCGGGGGGGHHH---HHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHHHTCCEEEECSSCHHHH--
T ss_pred EEEecCCCccccchhHHHHHHHH---HHHHHHHHHHhccCCCCEEEeCCccHHHHHHHHHHHcCCCEEEEecCCcccc--
Confidence 66655432211000011111111 11112233 4443 4999987753222222 223345899999998653100
Q ss_pred HHHHHhhhhcccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccC-CceEEEcCCCCch
Q psy15555 198 LTRVARRVITHNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQ-LKTYKLYPPCDTE 276 (488)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~-~k~~vi~~~~d~~ 276 (488)
+................+++.+++.+|.++++|+..++.+.+.++.+ .++.+++|++|.+
T Consensus 160 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~g~~~~k~~vi~ngvd~~ 220 (438)
T 3c48_A 160 -------------------NSYRDDSDTPESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVE 220 (438)
T ss_dssp -------------------SCC----CCHHHHHHHHHHHHHHHHCSEEEESSHHHHHHHHHHHCCCGGGEEECCCCCCTT
T ss_pred -------------------cccccccCCcchHHHHHHHHHHHhcCCEEEEcCHHHHHHHHHHhCCChhheEEecCCcccc
Confidence 00000000000112233556778899999999999999998866643 5899999999987
Q ss_pred hhhccCCC----------CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccC--ceEEEEEecCCCCCcHHHHH
Q psy15555 277 DLKKITHS----------KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWD--NLKLIFIGSTRNEEDEVCVK 344 (488)
Q Consensus 277 ~~~~~~~~----------~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~--~~~l~ivG~~~~~~~~~~~~ 344 (488)
.+.+.... ...++++++++|++.+.||++.+++|++.+.++. | +++|+|+|..... ....+
T Consensus 221 ~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~-----p~~~~~l~i~G~~~~~--g~~~~ 293 (438)
T 3c48_A 221 LYSPGNDRATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRD-----PDRNLRVIICGGPSGP--NATPD 293 (438)
T ss_dssp TSCCC----CHHHHHHTTCCSSSEEEEEESCBSGGGCHHHHHHHHHHHHHHC-----TTCSEEEEEECCBC--------C
T ss_pred ccCCcccchhhhhHHhcCCCCCCcEEEEEeeecccCCHHHHHHHHHHHHhhC-----CCcceEEEEEeCCCCC--CcHHH
Confidence 76553221 1346789999999999999999999999998876 5 7999999982100 02337
Q ss_pred HHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccc
Q psy15555 345 DMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCR 424 (488)
Q Consensus 345 ~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~ 424 (488)
+++++++++++.++|.++|+++.+|+.++|+.||++|.||..|++|++++|||++|+|||+++.++.. |++.++ .
T Consensus 294 ~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~-e~i~~~----~ 368 (438)
T 3c48_A 294 TYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLP-IAVAEG----E 368 (438)
T ss_dssp HHHHHHHHTTCTTTEEEECCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHHTTCCEEEESCTTHH-HHSCBT----T
T ss_pred HHHHHHHHcCCCCcEEEcCCCChHHHHHHHHhCCEEEECccccCCchHHHHHHHcCCCEEecCCCChh-HHhhCC----C
Confidence 88999999999999999999999999999999999999999999999999999999999999999886 899887 8
Q ss_pred cceecC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhccC
Q psy15555 425 NGFLAC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLFKVMKKS 487 (488)
Q Consensus 425 ~g~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~~~~~s 487 (488)
+|++++ |+++++++|.++++ |++.++++++++++.+++|||+.+++++.++|+++++..+.|
T Consensus 369 ~g~~~~~~d~~~la~~i~~l~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T 3c48_A 369 TGLLVDGHSPHAWADALATLLD-DDETRIRMGEDAVEHARTFSWAATAAQLSSLYNDAIANENVD 432 (438)
T ss_dssp TEEEESSCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred cEEECCCCCHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhcccC
Confidence 899987 89999999999999 999999999999999955999999999999999999876543
No 2
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=5e-40 Score=331.67 Aligned_cols=395 Identities=17% Similarity=0.180 Sum_probs=280.2
Q ss_pred ccEEEEeccCCC------------CCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCCh-hHHHHHhhhhccccc--CC
Q psy15555 52 LKTVAFFHPYCN------------AGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASP-SEIIKRAHQRFNIVL--PD 116 (488)
Q Consensus 52 ~~rI~~~~~~~~------------~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~ 116 (488)
+|||+++++... ..||.++++..++++|.++|++ |.+++....... . .....+ ..+ ..
T Consensus 7 ~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~--V~v~~~~~~~~~~~----~~~~~~-~~~~~~~ 79 (499)
T 2r60_A 7 IKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQ--VDIITRRIKDENWP----EFSGEI-DYYQETN 79 (499)
T ss_dssp CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCE--EEEEEECCCBTTBG----GGCCSE-EECTTCS
T ss_pred cceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCe--EEEEeCCCCccccc----chhhhH-HhccCCC
Confidence 599999987542 2578899999999999999544 444443322111 0 000000 011 13
Q ss_pred CeeEEEEeecccee---eccCchhHHHHHHHHHHHHHHHHHhhh--cCCcEEEecCCccchhh-hhhhhCCCeeEEEEeC
Q psy15555 117 QVINFVYLYRRKFV---EASLYPYFTLLGQSIGSMILGVEALLS--FQPDIYIDTMGYAFTYP-LFSYIGGSKVACYIHY 190 (488)
Q Consensus 117 ~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~pDiii~~~~~~~~~~-~~~~~~~~~~v~~~h~ 190 (488)
+ +.+..++..... ....+..+. .....+.+.+++ .+||+||.+...+..+. .+....++|++.+.|.
T Consensus 80 g-v~v~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~l~~~~~~~Divh~~~~~~~~~~~~~~~~~~~p~v~~~H~ 152 (499)
T 2r60_A 80 K-VRIVRIPFGGDKFLPKEELWPYLH------EYVNKIINFYREEGKFPQVVTTHYGDGGLAGVLLKNIKGLPFTFTGHS 152 (499)
T ss_dssp S-EEEEEECCSCSSCCCGGGCGGGHH------HHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHHHCCCEEEECSS
T ss_pred C-eEEEEecCCCcCCcCHHHHHHHHH------HHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHhcCCcEEEEccC
Confidence 3 666666543211 011111111 111334556666 58999998764333222 2233568999999996
Q ss_pred CccchHHHHHHHhhhhcccCccccccCccc-hhhhHHH-HHHHHHHHHHHhcccCEEEEcChhHHHHHHHH--hc-----
Q psy15555 191 PTITKEMLTRVARRVITHNNSQRVANNPIL-TSFKLFY-YKVFALLYSHVGKYSDIIMVNSSWTEEHVIQL--WN----- 261 (488)
Q Consensus 191 p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~--~~----- 261 (488)
..... ... .. ..... ......+ ......+++.+++.+|.++++|+.+++.+.+. ++
T Consensus 153 ~~~~~------~~~---~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~g~~~~~ 217 (499)
T 2r60_A 153 LGAQK------MEK---LN------VNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYSHDLYRGAVNV 217 (499)
T ss_dssp CHHHH------HHT---TC------CCSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTTTSGGGTTTCCT
T ss_pred ccccc------chh---hc------cCCCCcchhhhhHHHHHHHHHHHHHHhcCCEEEECCHHHHHHHHhhhcccccccc
Confidence 53100 000 00 00000 0111111 11222355678899999999999999999886 55
Q ss_pred -cCCceEEEcCCCCchhhhccCCC----------------CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccC
Q psy15555 262 -CQLKTYKLYPPCDTEDLKKITHS----------------KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWD 324 (488)
Q Consensus 262 -~~~k~~vi~~~~d~~~~~~~~~~----------------~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~ 324 (488)
.+.++.+++|++|.+.+.+.... ...++++++++|++.+.||++.+++|++.+.++.+ .
T Consensus 218 ~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~----~ 293 (499)
T 2r60_A 218 EDDDKFSVIPPGVNTRVFDGEYGDKIKAKITKYLERDLGSERMELPAIIASSRLDQKKNHYGLVEAYVQNKELQD----K 293 (499)
T ss_dssp TCGGGEEECCCCBCTTTSSSCCCHHHHHHHHHHHHHHSCGGGTTSCEEEECSCCCGGGCHHHHHHHHHTCHHHHH----H
T ss_pred cCCCCeEEECCCcChhhcCccchhhhHHHHHHHhcccccccCCCCcEEEEeecCccccCHHHHHHHHHHHHHhCC----C
Confidence 45689999999998877554220 23467899999999999999999999999987751 2
Q ss_pred ceEEEEEecCCCC---------CcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhC----cEEEEcCCCCcCCc
Q psy15555 325 NLKLIFIGSTRNE---------EDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEG----LIGLHAMWNEHFGI 391 (488)
Q Consensus 325 ~~~l~ivG~~~~~---------~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~a----d~~v~~s~~e~~g~ 391 (488)
..+++|+|..+.. .+.+|.++++++++++++.++|+|+|+++.+++..+|+.| |++|+||..|++|+
T Consensus 294 ~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~ 373 (499)
T 2r60_A 294 ANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGL 373 (499)
T ss_dssp CEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCSCBCCCS
T ss_pred ceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcccCCCCc
Confidence 3589999983211 0123368999999999999999999999999999999999 99999999999999
Q ss_pred cHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-hhcCHHH
Q psy15555 392 GIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSV-DRFSMEE 468 (488)
Q Consensus 392 ~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~ 468 (488)
+++|||++|+|||+++.++.. |++.++ .+|++++ |+++++++|.++++ |++.++++++++++.+ ++|||+.
T Consensus 374 ~~lEAma~G~PvI~s~~~g~~-e~v~~~----~~g~l~~~~d~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~ 447 (499)
T 2r60_A 374 APVEAMASGLPAVVTRNGGPA-EILDGG----KYGVLVDPEDPEDIARGLLKAFE-SEETWSAYQEKGKQRVEERYTWQE 447 (499)
T ss_dssp HHHHHHHTTCCEEEESSBHHH-HHTGGG----TSSEEECTTCHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHSBHHH
T ss_pred HHHHHHHcCCCEEEecCCCHH-HHhcCC----ceEEEeCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhCCHHH
Confidence 999999999999999998886 999887 8899986 99999999999999 9999999999999999 6699999
Q ss_pred HHHHHHHHHHHhhhhhc
Q psy15555 469 FKNGFLTFTQPLFKVMK 485 (488)
Q Consensus 469 ~~~~~~~~~~~~~~~~~ 485 (488)
+++++.++|++++..+.
T Consensus 448 ~~~~~~~~y~~~~~~~~ 464 (499)
T 2r60_A 448 TARGYLEVIQEIADRKD 464 (499)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999999999987554
No 3
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=1.6e-39 Score=318.18 Aligned_cols=358 Identities=16% Similarity=0.155 Sum_probs=270.4
Q ss_pred cccEEEEeccCCC-CCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccce
Q psy15555 51 VLKTVAFFHPYCN-AGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKF 129 (488)
Q Consensus 51 ~~~rI~~~~~~~~-~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 129 (488)
.+|||+++++... ..||.++++..++++| + +++|.+++...........+ . ..+ +.+..++....
T Consensus 3 ~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~--g~~v~v~~~~~~~~~~~~~~---~------~~~-~~~~~~~~~~~ 68 (394)
T 3okp_A 3 ASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--D--PESIVVFASTQNAEEAHAYD---K------TLD-YEVIRWPRSVM 68 (394)
T ss_dssp -CCCEEEEESCCTTSCSHHHHHHHHHHTTS--C--GGGEEEEEECSSHHHHHHHH---T------TCS-SEEEEESSSSC
T ss_pred CCceEEEEeCccCCccchHHHHHHHHHHHh--c--CCeEEEEECCCCccchhhhc---c------ccc-eEEEEcccccc
Confidence 4689999987554 4678889999999999 3 34555555543221101111 1 122 55555554322
Q ss_pred eeccCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhh--hhhhhCCCe-eEEEEeCCccchHHHHHHHhhhh
Q psy15555 130 VEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP--LFSYIGGSK-VACYIHYPTITKEMLTRVARRVI 206 (488)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~--~~~~~~~~~-~v~~~h~p~~~~d~~~~~~~~~~ 206 (488)
.. . ......+.+++++.+||+||.+...+..+. .++ ..++| ++...|.....+
T Consensus 69 ~~-----~-------~~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~~~~~~-~~~~~~~i~~~h~~~~~~----------- 124 (394)
T 3okp_A 69 LP-----T-------PTTAHAMAEIIREREIDNVWFGAAAPLALMAGTAK-QAGASKVIASTHGHEVGW----------- 124 (394)
T ss_dssp CS-----C-------HHHHHHHHHHHHHTTCSEEEESSCTTGGGGHHHHH-HTTCSEEEEECCSTHHHH-----------
T ss_pred cc-----c-------hhhHHHHHHHHHhcCCCEEEECCcchHHHHHHHHH-hcCCCcEEEEeccchhhh-----------
Confidence 11 1 112244667888999999997654443222 223 44665 777888542100
Q ss_pred cccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCC---
Q psy15555 207 THNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITH--- 283 (488)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~--- 283 (488)
........+.+.+++.+|.++++|+.+++.+.+.++.+.++.+++|++|.+.+.+...
T Consensus 125 -------------------~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~ 185 (394)
T 3okp_A 125 -------------------SMLPGSRQSLRKIGTEVDVLTYISQYTLRRFKSAFGSHPTFEHLPSGVDVKRFTPATPEDK 185 (394)
T ss_dssp -------------------TTSHHHHHHHHHHHHHCSEEEESCHHHHHHHHHHHCSSSEEEECCCCBCTTTSCCCCHHHH
T ss_pred -------------------hhcchhhHHHHHHHHhCCEEEEcCHHHHHHHHHhcCCCCCeEEecCCcCHHHcCCCCchhh
Confidence 0111223345567788999999999999999998877779999999999877655210
Q ss_pred -------CCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCC
Q psy15555 284 -------SKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLE 356 (488)
Q Consensus 284 -------~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~ 356 (488)
...+++++++++|++.+.||++.+++|++.+.++. ++++|+|+|+++.. +++++++ .++.
T Consensus 186 ~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~-----~~~~l~i~G~g~~~------~~l~~~~--~~~~ 252 (394)
T 3okp_A 186 SATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAAR-----PDAQLLIVGSGRYE------STLRRLA--TDVS 252 (394)
T ss_dssp HHHHHHTTCCTTCCEEEEESCSCGGGCHHHHHHHHHHHHHHS-----TTCEEEEECCCTTH------HHHHHHT--GGGG
T ss_pred HHHHHhcCCCcCceEEEEEeccccccCHHHHHHHHHHHHhhC-----CCeEEEEEcCchHH------HHHHHHH--hccc
Confidence 12345689999999999999999999999999887 89999999998643 6677776 5556
Q ss_pred CcEEEecCCChHHHHHHHHhCcEEEEcCCC-------CcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceec
Q psy15555 357 NNVEFKVNLPYEDMKKEFSEGLIGLHAMWN-------EHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLA 429 (488)
Q Consensus 357 ~~v~~~g~~~~~el~~~~~~ad~~v~~s~~-------e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~ 429 (488)
++|+++|+++++++.++|+.||++|.||.. |++|++++|||++|+|||+++.++.. |++.++ +|+++
T Consensus 253 ~~v~~~g~~~~~~~~~~~~~ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~-e~i~~~-----~g~~~ 326 (394)
T 3okp_A 253 QNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAP-ETVTPA-----TGLVV 326 (394)
T ss_dssp GGEEEEESCCHHHHHHHHHHCSEEEECCCCBGGGTBCCSSCHHHHHHHHTTCCEEECSSTTGG-GGCCTT-----TEEEC
T ss_pred CeEEEcCCCCHHHHHHHHHhCCEEEecCccccccccccccCcHHHHHHHcCCCEEEeCCCChH-HHHhcC-----CceEe
Confidence 899999999999999999999999999998 99999999999999999999999886 888764 78988
Q ss_pred C--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHhhhhhc
Q psy15555 430 C--DEVEYAQTIKLILHLSQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQPLFKVMK 485 (488)
Q Consensus 430 ~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~~~~~~~~ 485 (488)
+ |+++++++|.++++ |++.++++++++++.+ ++|||+.+++++.++|+++.....
T Consensus 327 ~~~d~~~l~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~r~~~ 384 (394)
T 3okp_A 327 EGSDVDKLSELLIELLD-DPIRRAAMGAAGRAHVEAEWSWEIMGERLTNILQSEPRKLA 384 (394)
T ss_dssp CTTCHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHSCCC---
T ss_pred CCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccCcc
Confidence 7 99999999999999 9999999999999999 779999999999999999876544
No 4
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=9.8e-39 Score=317.07 Aligned_cols=400 Identities=16% Similarity=0.087 Sum_probs=276.8
Q ss_pred cccEEEEeccCCCC--CCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHh-----hhh--cccccCCCeeEE
Q psy15555 51 VLKTVAFFHPYCNA--GGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRA-----HQR--FNIVLPDQVINF 121 (488)
Q Consensus 51 ~~~rI~~~~~~~~~--~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~v~~ 121 (488)
++|||+++++...+ .||.++++..++++|.++|| +|.+++...+.......... ... .......+ +.+
T Consensus 1 r~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~--~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-v~v 77 (439)
T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEALTAISEALASLGH--EVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGN-LRI 77 (439)
T ss_dssp CCCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTC--EEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETT-EEE
T ss_pred CceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCC--eEEEEecCCCCchhhhhccccccCcccceeeeeccCCC-ceE
Confidence 46999999876554 68899999999999999954 45554443222110000000 000 00001133 667
Q ss_pred EEeeccceeeccCch-hHHH-HHHHHHHHHHHHHHhh-----hcCCcEEEecCCccchhh-hhhhhCCCeeEEEEeCCcc
Q psy15555 122 VYLYRRKFVEASLYP-YFTL-LGQSIGSMILGVEALL-----SFQPDIYIDTMGYAFTYP-LFSYIGGSKVACYIHYPTI 193 (488)
Q Consensus 122 ~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~l~-----~~~pDiii~~~~~~~~~~-~~~~~~~~~~v~~~h~p~~ 193 (488)
..++...+.....+. .... ..+.........+.++ ..+||+||.+.......+ .++...++|++.++|....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~ 157 (439)
T 3fro_A 78 YRIGGGLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKKYFKIPAVFTIHRLNK 157 (439)
T ss_dssp EEEESGGGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGGHHHHHHHHHHHCCCEEEEESCCCC
T ss_pred EEecchhccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchhhhhhHHHHhhccCCCEEEEeccccc
Confidence 666652222222222 1111 1111112222333333 559999998764443333 2333568999999997653
Q ss_pred chHHHHHHHhhhhcccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhc-cCCceEEEcCC
Q psy15555 194 TKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWN-CQLKTYKLYPP 272 (488)
Q Consensus 194 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~-~~~k~~vi~~~ 272 (488)
..-....... .. .... .......+++..++.+|.++++|+..++.....++ .+.++.+++|+
T Consensus 158 ~~~~~~~~~~-------------~~-~~~~---~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~~~~~~~~i~vi~ng 220 (439)
T 3fro_A 158 SKLPAFYFHE-------------AG-LSEL---APYPDIDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFNG 220 (439)
T ss_dssp CCEEHHHHHH-------------TT-CGGG---CCSSEECHHHHHHHHCSEEEESCHHHHHHTHHHHGGGTTSEEECCCC
T ss_pred ccCchHHhCc-------------cc-cccc---cccceeeHhhhhhhhccEEEecCHHHHHHHhhhhhhcCCceeecCCC
Confidence 1100000000 00 0000 00000024456778899999999999888555433 34589999999
Q ss_pred CCchhhhccCC---------------CCCCCCeEEEEeeccC-CCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCC
Q psy15555 273 CDTEDLKKITH---------------SKTDGPVKIISVAQFR-PEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRN 336 (488)
Q Consensus 273 ~d~~~~~~~~~---------------~~~~~~~~i~~~g~~~-~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~ 336 (488)
+|.+.+.+... ...++ ++++++|++. +.||++.+++|++.+.++.. .++++|+|+|.++
T Consensus 221 vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~---~~~~~l~i~G~g~- 295 (439)
T 3fro_A 221 IDCSFWNESYLTGSRDERKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKKE---FQEMRFIIIGKGD- 295 (439)
T ss_dssp CCTTTSCGGGSCSCHHHHHHHHHHHHTCCSC-EEEEEECCSSCTTBCHHHHHHHHHHHHTSGG---GGGEEEEEECCCC-
T ss_pred CCchhcCcccccchhhhhHHHHHHHcCCCCC-cEEEEEcccccccccHHHHHHHHHHHHhccc---CCCeEEEEEcCCC-
Confidence 99887765421 01334 9999999999 99999999999999987530 0489999999986
Q ss_pred CCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCcccee
Q psy15555 337 EEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIV 416 (488)
Q Consensus 337 ~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv 416 (488)
.++.+++++++++++ +.+.+.|+++.+++.++|+.||++|.||..|++|++++|||++|+|||+++.++.. |++
T Consensus 296 ---~~~~~~l~~~~~~~~--~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~-e~~ 369 (439)
T 3fro_A 296 ---PELEGWARSLEEKHG--NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLR-DII 369 (439)
T ss_dssp ---HHHHHHHHHHHHHCT--TEEEECSCCCHHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHHH-HHC
T ss_pred ---hhHHHHHHHHHhhcC--CEEEEcCCCCHHHHHHHHHHCCEEEeCCCCCCccHHHHHHHHCCCCeEEcCCCCcc-eeE
Confidence 245588899999887 67889999999999999999999999999999999999999999999999999886 888
Q ss_pred ccCCCccccceecC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhcc
Q psy15555 417 IEDPETCRNGFLAC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLFKVMKK 486 (488)
Q Consensus 417 ~~~~~~~~~g~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 486 (488)
.++ +|++++ |+++++++|.++++++++.++++++++++.+++|||+.+++++.++|++++++..+
T Consensus 370 ~~~-----~g~~~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 436 (439)
T 3fro_A 370 TNE-----TGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFSWEKSAERYVKAYTGSIDRAFD 436 (439)
T ss_dssp CTT-----TCEEECTTCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHTCSCCBCS
T ss_pred EcC-----ceEEeCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhhh
Confidence 654 788876 99999999999998678999999999999998899999999999999999876543
No 5
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=3.9e-39 Score=317.44 Aligned_cols=355 Identities=12% Similarity=0.105 Sum_probs=266.7
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeec---cce
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYR---RKF 129 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~ 129 (488)
|||+++++..+..||.++++..++++|.++ +++.++.+........ .. ........ ...
T Consensus 1 MkI~~v~~~~p~~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g~~~~----------------~~-~~~~~~~~~~~~~~ 62 (413)
T 3oy2_A 1 MKLIIVGAHSSVPSGYGRVMRAIVPRISKA-HEVIVFGIHAFGRSVH----------------AN-IEEFDAQTAEHVRG 62 (413)
T ss_dssp CEEEEEEECTTCCSHHHHHHHHHHHHHTTT-SEEEEEEESCCSCCSC----------------SS-SEEEEHHHHHHHTT
T ss_pred CeEEEecCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEeecCCCcccc----------------cc-cccCCccccccccc
Confidence 899999988888888999999999999998 7777765544311100 00 00000000 000
Q ss_pred eeccCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhhhhhCCC----eeEEEEeCCccchHHHHHHHhhh
Q psy15555 130 VEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGS----KVACYIHYPTITKEMLTRVARRV 205 (488)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~~~~~~~----~~v~~~h~p~~~~d~~~~~~~~~ 205 (488)
.....+. ...+.+.+++.+||+||.+...+.....+....+. +++...|.....
T Consensus 63 ~~~~~~~-----------~~~l~~~l~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 120 (413)
T 3oy2_A 63 LNEQGFY-----------YSGLSEFIDVHKPDIVMIYNDPIVIGNYLLAMGKCSHRTKIVLYVDLVSKN----------- 120 (413)
T ss_dssp CCSTTCC-----------HHHHHHHHHHHCCSEEEEEECHHHHHHHHHHGGGCCSCCEEEEEECCCSBS-----------
T ss_pred cccccch-----------HHHHHHHHHhcCCCEEEEcchHHHHHHHHHHhccCCCCCceeeeccccchh-----------
Confidence 0000000 02245567888999998774333333333323333 344445432210
Q ss_pred hcccCccccccCccchhhhHHHHHHHHHHHHHHhcccC--EEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCC
Q psy15555 206 ITHNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSD--IIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITH 283 (488)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~ 283 (488)
... . .+.+++++| .++++|+..++.+.+ ++.+.++.+++||+|.+.+.....
T Consensus 121 --------------~~~--~---------~~~~~~~~~~~~ii~~S~~~~~~~~~-~~~~~~~~vi~ngvd~~~~~~~~~ 174 (413)
T 3oy2_A 121 --------------IRE--N---------LWWIFSHPKVVGVMAMSKCWISDICN-YGCKVPINIVSHFVDTKTIYDARK 174 (413)
T ss_dssp --------------CCG--G---------GGGGGGCTTEEEEEESSTHHHHHHHH-TTCCSCEEECCCCCCCCCCTTHHH
T ss_pred --------------hHH--H---------HHHHHhccCCceEEEcCHHHHHHHHH-cCCCCceEEeCCCCCHHHHHHHHH
Confidence 000 0 245678878 999999999999999 554678999999999876632221
Q ss_pred --CCCC--CCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCc-
Q psy15555 284 --SKTD--GPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENN- 358 (488)
Q Consensus 284 --~~~~--~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~- 358 (488)
..++ ++++++++|++.+.||++.+++|++.+.++. |+++|+|+|+++.....+..+.++++++++|+.++
T Consensus 175 ~~~~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~~~~-----~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v 249 (413)
T 3oy2_A 175 LVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARFISKY-----PDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVF 249 (413)
T ss_dssp HTTCGGGTTSEEEECCSCSSGGGTHHHHHHHHHHHHHHC-----TTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHH
T ss_pred hcCCCcccCceEEEEcCCCchhcCcHHHHHHHHHHHHhC-----CCcEEEEEeCCcccchhhHHHHHHHHHHHcCccccc
Confidence 1223 6789999999999999999999999998887 89999999999765443455888999999999886
Q ss_pred ------EEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCcccc-------
Q psy15555 359 ------VEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRN------- 425 (488)
Q Consensus 359 ------v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~------- 425 (488)
+.+.|+++.+|+.++|+.||++|+||..|+||++++|||++|+|||+++.++.. |++.++ .+
T Consensus 250 ~~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~~g~~-e~v~~~----~~~~i~~~~ 324 (413)
T 3oy2_A 250 THLNKIMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLIISAVGGAD-DYFSGD----CVYKIKPSA 324 (413)
T ss_dssp HHHTTEEEECSCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHTTTCCEEEECCHHHH-HHSCTT----TSEEECCCE
T ss_pred ccccceeeccCcCCHHHHHHHHHhCCEEEeCCCcCCCCcHHHHHHHcCCCEEEcCCCChH-HHHccC----ccccccccc
Confidence 888899999999999999999999999999999999999999999999999886 888876 55
Q ss_pred --------ce--ecC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHhhhhhc
Q psy15555 426 --------GF--LAC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQPLFKVMK 485 (488)
Q Consensus 426 --------g~--~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~~~~~~~~ 485 (488)
|+ +++ |+++++++| ++++ |++.++++++++++.+ ++|||+.+++++.++|+++++++.
T Consensus 325 ~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~~ 395 (413)
T 3oy2_A 325 WISVDDRDGIGGIEGIIDVDDLVEAF-TFFK-DEKNRKEYGKRVQDFVKTKPTWDDISSDIIDFFNSLLRVES 395 (413)
T ss_dssp EEECTTTCSSCCEEEECCHHHHHHHH-HHTT-SHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTC---
T ss_pred ccccccccCcceeeCCCCHHHHHHHH-HHhc-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhcC
Confidence 77 765 999999999 9999 9999999999999999 899999999999999999987553
No 6
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=4.7e-39 Score=314.79 Aligned_cols=364 Identities=17% Similarity=0.164 Sum_probs=265.3
Q ss_pred ccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceee
Q psy15555 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVE 131 (488)
Q Consensus 52 ~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 131 (488)
.|+.-+.....+..||+++++..++++|.++ |++|.+++........ ..... +.+..++......
T Consensus 13 ~~~~~~~~~~~p~~GG~~~~~~~la~~L~~~--G~~V~v~~~~~~~~~~------------~~~~~-i~~~~~~~~~~~~ 77 (394)
T 2jjm_A 13 HMKLKIGITCYPSVGGSGVVGTELGKQLAER--GHEIHFITSGLPFRLN------------KVYPN-IYFHEVTVNQYSV 77 (394)
T ss_dssp --CCEEEEECCC--CHHHHHHHHHHHHHHHT--TCEEEEECSSCC----------------CCCTT-EEEECCCCC----
T ss_pred hheeeeehhcCCCCCCHHHHHHHHHHHHHhC--CCEEEEEeCCCCCccc------------ccCCc-eEEEecccccccc
Confidence 3555455555566788999999999999998 5666666654221100 00112 3333332211100
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhh--hhhhhC--CCeeEEEEeCCccchHHHHHHHhhhhc
Q psy15555 132 ASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP--LFSYIG--GSKVACYIHYPTITKEMLTRVARRVIT 207 (488)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~--~~~~~~--~~~~v~~~h~p~~~~d~~~~~~~~~~~ 207 (488)
.... ...+.....+.+.+++.+||+||.+...+..+. +++... ++|++.+.|.... ..
T Consensus 78 -~~~~-----~~~~~~~~~l~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~------~~------ 139 (394)
T 2jjm_A 78 -FQYP-----PYDLALASKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDI------TV------ 139 (394)
T ss_dssp -CCSC-----CHHHHHHHHHHHHHHHHTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHH------HT------
T ss_pred -cccc-----cccHHHHHHHHHHHHHcCCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCcc------cc------
Confidence 0000 011222344667788899999998765544322 222222 5899998884210 00
Q ss_pred ccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCC----
Q psy15555 208 HNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITH---- 283 (488)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~---- 283 (488)
.. .. . .+..+++.+++.+|.++++|+.+++.+.+.++.+.++.+++|++|.+.+.+...
T Consensus 140 ~~------~~---~--------~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~ 202 (394)
T 2jjm_A 140 LG------SD---P--------SLNNLIRFGIEQSDVVTAVSHSLINETHELVKPNKDIQTVYNFIDERVYFKRDMTQLK 202 (394)
T ss_dssp TT------TC---T--------TTHHHHHHHHHHSSEEEESCHHHHHHHHHHTCCSSCEEECCCCCCTTTCCCCCCHHHH
T ss_pred cC------CC---H--------HHHHHHHHHHhhCCEEEECCHHHHHHHHHhhCCcccEEEecCCccHHhcCCcchHHHH
Confidence 00 00 0 011234456788999999999999999998776678999999999877654321
Q ss_pred ---CCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEE
Q psy15555 284 ---SKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVE 360 (488)
Q Consensus 284 ---~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~ 360 (488)
..+.++++++++|++.+.||++.+++|++.+.++ ++++|+|+|.++.. ++++++++++++.++|.
T Consensus 203 ~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~------~~~~l~i~G~g~~~------~~l~~~~~~~~l~~~v~ 270 (394)
T 2jjm_A 203 KEYGISESEKILIHISNFRKVKRVQDVVQAFAKIVTE------VDAKLLLVGDGPEF------CTILQLVKNLHIEDRVL 270 (394)
T ss_dssp HHTTCC---CEEEEECCCCGGGTHHHHHHHHHHHHHS------SCCEEEEECCCTTH------HHHHHHHHTTTCGGGBC
T ss_pred HHcCCCCCCeEEEEeeccccccCHHHHHHHHHHHHhh------CCCEEEEECCchHH------HHHHHHHHHcCCCCeEE
Confidence 1124678999999999999999999999999876 47899999998643 78999999999989999
Q ss_pred EecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHH
Q psy15555 361 FKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQT 438 (488)
Q Consensus 361 ~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~ 438 (488)
+.|+. +|+..+|+.||+++.||..|++|++++|||++|+|||+++.++.. |++.++ .+|++++ |+++++++
T Consensus 271 ~~g~~--~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~PvI~~~~~~~~-e~v~~~----~~g~~~~~~d~~~la~~ 343 (394)
T 2jjm_A 271 FLGKQ--DNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIP-EVIQHG----DTGYLCEVGDTTGVADQ 343 (394)
T ss_dssp CCBSC--SCTHHHHHTCSEEEECCSCCSCCHHHHHHHHTTCCEEEECCTTST-TTCCBT----TTEEEECTTCHHHHHHH
T ss_pred EeCch--hhHHHHHHhCCEEEeccccCCCchHHHHHHhcCCCEEEecCCChH-HHhhcC----CceEEeCCCCHHHHHHH
Confidence 99975 899999999999999999999999999999999999999999886 999887 8899987 99999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHhhhhhc
Q psy15555 439 IKLILHLSQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQPLFKVMK 485 (488)
Q Consensus 439 i~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~~~~~~~~ 485 (488)
|.++++ |++.++++++++++.+ ++|||+.+++++.++|++++...+
T Consensus 344 i~~l~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 390 (394)
T 2jjm_A 344 AIQLLK-DEELHRNMGERARESVYEQFRSEKIVSQYETIYYDVLRDDK 390 (394)
T ss_dssp HHHHHH-CHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTC----
T ss_pred HHHHHc-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Confidence 999999 9999999999999999 999999999999999999987654
No 7
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=3.6e-38 Score=309.81 Aligned_cols=364 Identities=12% Similarity=0.100 Sum_probs=267.8
Q ss_pred cccccEEEEeccCCCC-CCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeecc
Q psy15555 49 YNVLKTVAFFHPYCNA-GGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRR 127 (488)
Q Consensus 49 ~~~~~rI~~~~~~~~~-~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 127 (488)
...+|||+++.+.... .||.++.+..++++|.++ |++|.+++........ . .+. . .. ..+..++..
T Consensus 17 ~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~------~-~~~-~--~~-~~~~~~~~~ 83 (406)
T 2gek_A 17 RGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDA--GHEVSVLAPASPHVKL------P-DYV-V--SG-GKAVPIPYN 83 (406)
T ss_dssp ----CEEEEECSSCTTSCCHHHHHHHHHHHHHHHT--TCEEEEEESCCTTSCC------C-TTE-E--EC-CCCC-----
T ss_pred CCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEecCCccccC------C-ccc-c--cC-CcEEecccc
Confidence 3457999999977654 477889999999999998 5666666655332100 0 000 0 00 001111111
Q ss_pred ceeeccCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhh-hhhhhCCCeeEEEEeCCccchHHHHHHHhhhh
Q psy15555 128 KFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP-LFSYIGGSKVACYIHYPTITKEMLTRVARRVI 206 (488)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~-~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~ 206 (488)
.......+. ......+.+.+++.+||+||.+......+. .+....++|++.++|......
T Consensus 84 ~~~~~~~~~--------~~~~~~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~----------- 144 (406)
T 2gek_A 84 GSVARLRFG--------PATHRKVKKWIAEGDFDVLHIHEPNAPSLSMLALQAAEGPIVATFHTSTTKS----------- 144 (406)
T ss_dssp -------CC--------HHHHHHHHHHHHHHCCSEEEEECCCSSSHHHHHHHHEESSEEEEECCCCCSH-----------
T ss_pred CCccccccc--------HHHHHHHHHHHHhcCCCEEEECCccchHHHHHHHHhcCCCEEEEEcCcchhh-----------
Confidence 110000000 111234566778889999986654443322 222245889999999653110
Q ss_pred cccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCC--
Q psy15555 207 THNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHS-- 284 (488)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~-- 284 (488)
.. . ..+....+..++.+|.+++.|+..++.+.+.++. .++ +++|++|.+.+.+....
T Consensus 145 ---------------~~---~-~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~-~~~-vi~~~v~~~~~~~~~~~~~ 203 (406)
T 2gek_A 145 ---------------LT---L-SVFQGILRPYHEKIIGRIAVSDLARRWQMEALGS-DAV-EIPNGVDVASFADAPLLDG 203 (406)
T ss_dssp ---------------HH---H-HHHHSTTHHHHTTCSEEEESSHHHHHHHHHHHSS-CEE-ECCCCBCHHHHHTCCCCTT
T ss_pred ---------------hh---H-HHHHHHHHHHHhhCCEEEECCHHHHHHHHHhcCC-CcE-EecCCCChhhcCCCchhhh
Confidence 00 0 1111122257789999999999999999886664 478 99999998877655422
Q ss_pred CCCCCeEEEEeecc-CCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEec
Q psy15555 285 KTDGPVKIISVAQF-RPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKV 363 (488)
Q Consensus 285 ~~~~~~~i~~~g~~-~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g 363 (488)
...++++++++|++ .+.||++.+++|+..+.++. |+++|+|+|.++ + ++++++++++ .++|.++|
T Consensus 204 ~~~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~-----~~~~l~i~G~~~-----~--~~l~~~~~~~--~~~v~~~g 269 (406)
T 2gek_A 204 YPREGRTVLFLGRYDEPRKGMAVLLAALPKLVARF-----PDVEILIVGRGD-----E--DELREQAGDL--AGHLRFLG 269 (406)
T ss_dssp CSCSSCEEEEESCTTSGGGCHHHHHHHHHHHHTTS-----TTCEEEEESCSC-----H--HHHHHHTGGG--GGGEEECC
T ss_pred ccCCCeEEEEEeeeCccccCHHHHHHHHHHHHHHC-----CCeEEEEEcCCc-----H--HHHHHHHHhc--cCcEEEEe
Confidence 22345799999999 99999999999999998887 899999999985 3 6777777766 57899999
Q ss_pred CCChHHHHHHHHhCcEEEEcCC-CCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHH
Q psy15555 364 NLPYEDMKKEFSEGLIGLHAMW-NEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIK 440 (488)
Q Consensus 364 ~~~~~el~~~~~~ad~~v~~s~-~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~ 440 (488)
+++++|+.++|+.||++|.||. .|++|++++|||++|+|||+++.++.. |++.++ .+|++++ |+++++++|.
T Consensus 270 ~~~~~~~~~~~~~adv~v~ps~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~-e~i~~~----~~g~~~~~~d~~~l~~~i~ 344 (406)
T 2gek_A 270 QVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVASDLDAFR-RVLADG----DAGRLVPVDDADGMAAALI 344 (406)
T ss_dssp SCCHHHHHHHHHHSSEEEECCCSCCSSCHHHHHHHHHTCEEEECCCHHHH-HHHTTT----TSSEECCTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCEEEecCCCCCCCchHHHHHHHcCCCEEEecCCcHH-HHhcCC----CceEEeCCCCHHHHHHHHH
Confidence 9999999999999999999995 999999999999999999999998886 999887 8899984 9999999999
Q ss_pred HHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhc
Q psy15555 441 LILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLFKVMK 485 (488)
Q Consensus 441 ~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 485 (488)
++++ +++.+.++++++++.+++|||+.+++++.++|+++++...
T Consensus 345 ~l~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 388 (406)
T 2gek_A 345 GILE-DDQLRAGYVARASERVHRYDWSVVSAQIMRVYETVSGAGI 388 (406)
T ss_dssp HHHH-CHHHHHHHHHHHHHHGGGGBHHHHHHHHHHHHHHHCCTTC
T ss_pred HHHc-CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhcc
Confidence 9999 9999999999999999999999999999999999987653
No 8
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=9.4e-38 Score=307.80 Aligned_cols=360 Identities=14% Similarity=0.137 Sum_probs=258.3
Q ss_pred cccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeecccee
Q psy15555 51 VLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFV 130 (488)
Q Consensus 51 ~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 130 (488)
++|||+++.+.. ..||.++++..++++|.++| ++|.+++...........+.....+ .. .....++
T Consensus 39 ~~mkIl~v~~~~-~~GG~~~~~~~l~~~L~~~G--~~v~v~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~----- 104 (416)
T 2x6q_A 39 KGRSFVHVNSTS-FGGGVAEILHSLVPLLRSIG--IEARWFVIEGPTEFFNVTKTFHNAL-----QG-NESLKLT----- 104 (416)
T ss_dssp TTCEEEEEESCS-SSSTHHHHHHHHHHHHHHTT--CEEEEEECCCCHHHHHHHHHHHHHH-----TT-CCSCCCC-----
T ss_pred hccEEEEEeCCC-CCCCHHHHHHHHHHHHHhCC--CeEEEEEccCCcchhhhhcccceee-----cc-ccccccc-----
Confidence 469999998774 46789999999999999985 5554444432211111111111111 00 0000000
Q ss_pred eccCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccC
Q psy15555 131 EASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNN 210 (488)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~ 210 (488)
..... ..........+.++..+||+||.+...+..+..+. ...+|++.++|......
T Consensus 105 ----~~~~~---~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~-~~~~p~v~~~h~~~~~~--------------- 161 (416)
T 2x6q_A 105 ----EEMKE---LYLNVNRENSKFIDLSSFDYVLVHDPQPAALIEFY-EKKSPWLWRCHIDLSSP--------------- 161 (416)
T ss_dssp ----HHHHH---HHHHHHHHHHHSSCGGGSSEEEEESSTTGGGGGGS-CCCSCEEEECCSCCSSC---------------
T ss_pred ----HHHHH---HHHHHHHHHHHHHhhcCCCEEEEeccchhhHHHHH-HhcCCEEEEEccccCCc---------------
Confidence 00011 11112233556677889999998775554433222 33488999888653100
Q ss_pred ccccccCccchhhhHHHHHHHHHHHHHHhcccCEEE-EcChhHHHHHHHHhccCCceEEEcCCCCchhhhccC-------
Q psy15555 211 SQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIM-VNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKIT------- 282 (488)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii-~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~------- 282 (488)
....++ ..+..+.++|.++ ++|+..++.+ . ..++.+++|++|...+.+..
T Consensus 162 -------------~~~~~~----~~~~~~~~~~~~i~~~s~~~~~~~----~-~~~~~vi~ngvd~~~~~~~~~~~~~~~ 219 (416)
T 2x6q_A 162 -------------NREFWE----FLRRFVEKYDRYIFHLPEYVQPEL----D-RNKAVIMPPSIDPLSEKNVELKQTEIL 219 (416)
T ss_dssp -------------CHHHHH----HHHHHHTTSSEEEESSGGGSCTTS----C-TTTEEECCCCBCTTSTTTSCCCHHHHH
T ss_pred -------------cHHHHH----HHHHHHHhCCEEEEechHHHHhhC----C-ccceEEeCCCCChhhhcccccChhhHH
Confidence 011111 1223456677776 5555544322 1 25789999999876543211
Q ss_pred -----CCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCC
Q psy15555 283 -----HSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLEN 357 (488)
Q Consensus 283 -----~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~ 357 (488)
....+++++++++|++.+.||++.+++|++.+.++. |+++|+|+|.++.. ++++.+.++++++++++.+
T Consensus 220 ~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~-----~~~~l~i~G~g~~~-~~~~~~~l~~~~~~~~~~~ 293 (416)
T 2x6q_A 220 RILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKI-----PGVQLLLVGVMAHD-DPEGWIYFEKTLRKIGEDY 293 (416)
T ss_dssp HHHHHTTCCTTSCEEEEECCCCTTSCHHHHHHHHHHHHHHC-----TTCEEEEEECCCTT-CHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHhCCCCCCcEEEEEeccccccCHHHHHHHHHHHHHhC-----CCeEEEEEecCccc-chhHHHHHHHHHHHhCCCC
Confidence 012346789999999999999999999999999887 89999999999743 2345577889999999989
Q ss_pred cEEEecCC---ChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHH
Q psy15555 358 NVEFKVNL---PYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVE 434 (488)
Q Consensus 358 ~v~~~g~~---~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~ 434 (488)
+|.++|++ +++++..+|+.||++|.||..|++|++++|||++|+|||+++.++.. |++.++ .+|++++|+++
T Consensus 294 ~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~E~~~~~~lEAma~G~PvI~~~~~g~~-e~i~~~----~~g~l~~d~~~ 368 (416)
T 2x6q_A 294 DVKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTEAMWKGKPVIGRAVGGIK-FQIVDG----ETGFLVRDANE 368 (416)
T ss_dssp TEEEEEGGGTCCHHHHHHHHHHCSEEEECCSSCSSCHHHHHHHHTTCCEEEESCHHHH-HHCCBT----TTEEEESSHHH
T ss_pred cEEEecccCCCCHHHHHHHHHhCCEEEECCCcCCCccHHHHHHHcCCCEEEccCCCCh-hheecC----CCeEEECCHHH
Confidence 99999955 46799999999999999999999999999999999999999998886 899888 89999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHhh
Q psy15555 435 YAQTIKLILHLSQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQPLF 481 (488)
Q Consensus 435 l~~~i~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~~~~ 481 (488)
++++|.++++ |++.++++++++++.+ ++|||+.+++++.++|++++
T Consensus 369 la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~l~ 415 (416)
T 2x6q_A 369 AVEVVLYLLK-HPEVSKEMGAKAKERVRKNFIITKHMERYLDILNSLG 415 (416)
T ss_dssp HHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHh-CHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhh
Confidence 9999999999 9999999999999998 79999999999999999875
No 9
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=6.9e-38 Score=304.28 Aligned_cols=354 Identities=14% Similarity=0.126 Sum_probs=260.6
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
|||+++++.....||.++++..++++|.++|+++. +++....... ..+ +.+..++...+..
T Consensus 1 MkIl~i~~~~~~~gG~~~~~~~l~~~L~~~G~~V~--v~~~~~~~~~---------------~~~-~~v~~~~~~~~~~- 61 (374)
T 2iw1_A 1 MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVR--VYTQSWEGDC---------------PKA-FELIQVPVKSHTN- 61 (374)
T ss_dssp -CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEE--EEESEECSCC---------------CTT-CEEEECCCCCSSH-
T ss_pred CeEEEEEeecCCCcchhhHHHHHHHHHHhCCCeEE--EEecCCCCCC---------------CCC-cEEEEEccCcccc-
Confidence 89999988766678899999999999999955555 4444321111 012 5555554332210
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhhh-hhCCCeeEEEEeCCccchHHHHHHHhhhhcccCc
Q psy15555 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFS-YIGGSKVACYIHYPTITKEMLTRVARRVITHNNS 211 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~~-~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~ 211 (488)
. .........+.+.+++.+||+||.+...+....... .....+.+...|..
T Consensus 62 -----~---~~~~~~~~~l~~~i~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 113 (374)
T 2iw1_A 62 -----H---GRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGF-------------------- 113 (374)
T ss_dssp -----H---HHHHHHHHHHHHHHHHSCCSEEEESSCCTTCSEEECCSCCHHHHHHHHCCH--------------------
T ss_pred -----h---hhHHHHHHHHHHHHhccCCCEEEEecCCCCceeeeccccccceeeeecccc--------------------
Confidence 0 111222344667788899999997754332211110 00011111100100
Q ss_pred cccccCccchhhhHHHHHHHHHHHHHHhc--ccCEEEEcChhHHHHHHHHhccC-CceEEEcCCCCchhhhccCCC----
Q psy15555 212 QRVANNPILTSFKLFYYKVFALLYSHVGK--YSDIIMVNSSWTEEHVIQLWNCQ-LKTYKLYPPCDTEDLKKITHS---- 284 (488)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~ii~~s~~~~~~~~~~~~~~-~k~~vi~~~~d~~~~~~~~~~---- 284 (488)
.... ...++.+..+++..+. .+|.++++|+..++.+.+.++.+ .++.+++|++|.+.+.+....
T Consensus 114 --------~~~~-~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~ 184 (374)
T 2iw1_A 114 --------LYRL-TSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSRE 184 (374)
T ss_dssp --------HHHT-SHHHHHHHHHHHHHHSTTCCCEEEESCHHHHHHHHHHHCCCGGGEEECCCCCCGGGSGGGSCTTHHH
T ss_pred --------hhhh-cHHHHHHHHHHHHHhhccCCcEEEEcCHHHHHHHHHHhCCChhheEEecCCcCHHhcCcccchhHHH
Confidence 0000 0112233344554554 79999999999999999876654 589999999998877654321
Q ss_pred -------CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHh-hhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCC
Q psy15555 285 -------KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQI-ISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLE 356 (488)
Q Consensus 285 -------~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~-~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~ 356 (488)
..+++++++++|++.+.||++.+++|++.+.++ . ++++++++|.++. ++++++++++++.
T Consensus 185 ~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~-----~~~~l~i~G~g~~-------~~~~~~~~~~~~~ 252 (374)
T 2iw1_A 185 IYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLR-----HNTLLFVVGQDKP-------RKFEALAEKLGVR 252 (374)
T ss_dssp HHHHHTTCCTTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHH-----HTEEEEEESSSCC-------HHHHHHHHHHTCG
T ss_pred HHHHHhCCCCCCeEEEEeccchhhcCHHHHHHHHHHhHhccC-----CceEEEEEcCCCH-------HHHHHHHHHcCCC
Confidence 125678999999999999999999999999776 4 6899999999852 6788889999988
Q ss_pred CcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC---CHH
Q psy15555 357 NNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC---DEV 433 (488)
Q Consensus 357 ~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~---~~~ 433 (488)
++|+++|+. +++..+|+.||+++.||..|++|++++|||++|+|||+++.++.. |++.++ .+|++++ |++
T Consensus 253 ~~v~~~g~~--~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~-e~i~~~----~~g~~~~~~~~~~ 325 (374)
T 2iw1_A 253 SNVHFFSGR--NDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYA-HYIADA----NCGTVIAEPFSQE 325 (374)
T ss_dssp GGEEEESCC--SCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTTT-HHHHHH----TCEEEECSSCCHH
T ss_pred CcEEECCCc--ccHHHHHHhcCEEEeccccCCcccHHHHHHHCCCCEEEecCCCch-hhhccC----CceEEeCCCCCHH
Confidence 999999986 899999999999999999999999999999999999999999886 888887 7899875 899
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhh
Q psy15555 434 EYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLFK 482 (488)
Q Consensus 434 ~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~ 482 (488)
+++++|.++++ |++.++++++++++.+++++|+.+.+++.++++..+.
T Consensus 326 ~l~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 373 (374)
T 2iw1_A 326 QLNEVLRKALT-QSPLRMAWAENARHYADTQDLYSLPEKAADIITGGLD 373 (374)
T ss_dssp HHHHHHHHHHH-CHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHc-ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 99999999999 9999999999999999888999999999999987653
No 10
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=6.9e-37 Score=316.75 Aligned_cols=392 Identities=16% Similarity=0.193 Sum_probs=271.9
Q ss_pred cccEEEEeccCC----------CCCCCceehHHH--------HHHHHHHhCCCe--eEEEEeCCCCCChhHHHHHhhhhc
Q psy15555 51 VLKTVAFFHPYC----------NAGGGGERVLWT--------AVLALHQKYPDY--KIYIYTGDVDASPSEIIKRAHQRF 110 (488)
Q Consensus 51 ~~~rI~~~~~~~----------~~~gG~e~~~~~--------l~~~L~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~ 110 (488)
..++|+++++.. ...||.+.++.+ ++++|.++|+++ +|.++|......... .....
T Consensus 277 ~~~~i~~is~hg~~~~~~~lG~~dtGGq~vyV~e~~~al~~ela~~L~~~G~~V~~~V~v~Tr~~~~~~g~---~y~~~- 352 (816)
T 3s28_A 277 MVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVGT---TCGER- 352 (816)
T ss_dssp CCCEEEEECCSSCCCSSSCTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECCTTCTTS---STTSS-
T ss_pred ceeEEEEEcCCcccCccccCCCCCCCCceeeHHHHHHHHHHHHHHHHHHCCCccceeeEEEeCCCCCCCCC---ccCCc-
Confidence 358999987654 355666788885 666667787766 355666553322110 00000
Q ss_pred ccccC-CCeeEEEEeeccce-------ee-ccCchhHHHHHHHHHHHHHHHHHhh--hcCCcEEEecCCccchhh-hhhh
Q psy15555 111 NIVLP-DQVINFVYLYRRKF-------VE-ASLYPYFTLLGQSIGSMILGVEALL--SFQPDIYIDTMGYAFTYP-LFSY 178 (488)
Q Consensus 111 ~~~~~-~~~v~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~l~--~~~pDiii~~~~~~~~~~-~~~~ 178 (488)
...+. .+++.++++|.... .. ...++.+..+.. .....+++ ..+|||||.+........ .++.
T Consensus 353 ~e~i~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~-----~~l~~il~~~~~~PDVIHsH~~~sglva~llar 427 (816)
T 3s28_A 353 LERVYDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTE-----DAAVELSKELNGKPDLIIGNYSDGNLVASLLAH 427 (816)
T ss_dssp EEECTTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHH-----HHHHHHHHHCSSCCSEEEEEHHHHHHHHHHHHH
T ss_pred ceeecCcCCeEEEEecCCCccccccccccHHHHHHHHHHHHH-----HHHHHHHHhcCCCCeEEEeCCchHHHHHHHHHH
Confidence 01111 11277777766431 21 223333322210 11222332 347999998753333222 2333
Q ss_pred hCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHHHHH--HHHHHHhcccCEEEEcChhHHHHH
Q psy15555 179 IGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFA--LLYSHVGKYSDIIMVNSSWTEEHV 256 (488)
Q Consensus 179 ~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~ii~~s~~~~~~~ 256 (488)
..++|++.+.|...... .. ........... .++... ..++.+++.+|.|+++|+..++.+
T Consensus 428 ~~gvP~V~T~Hsl~~~k-------~~----------~~~~~~~~~~~-~y~~~~r~~aE~~~l~~AD~VIa~S~~~~~~l 489 (816)
T 3s28_A 428 KLGVTQCTIAHALEKTK-------YP----------DSDIYWKKLDD-KYHFSCQFTADIFAMNHTDFIITSTFQEIAGS 489 (816)
T ss_dssp HHTCCEEEECSCCHHHH-------ST----------TTTTTHHHHHH-HHCHHHHHHHHHHHHHHSSEEEESCHHHHHCC
T ss_pred HcCCCEEEEEecccccc-------cc----------cccchhhhHHH-HHHHHHHHHHHHHHHHhCCEEEECCHHHHHHH
Confidence 56899999988542100 00 00000001111 111111 235668899999999999988853
Q ss_pred HHH---hcc-------------------CCceEEEcCCCCchhhhccCCC----------------------------CC
Q psy15555 257 IQL---WNC-------------------QLKTYKLYPPCDTEDLKKITHS----------------------------KT 286 (488)
Q Consensus 257 ~~~---~~~-------------------~~k~~vi~~~~d~~~~~~~~~~----------------------------~~ 286 (488)
.+. +.. ..|+.+||||+|.+.|.+.... ..
T Consensus 490 ~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r~~lg~l~~ 569 (816)
T 3s28_A 490 KETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKD 569 (816)
T ss_dssp SSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBTTEESCBSC
T ss_pred HHHHHHhhhhhccccchhhhcccccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccccchhhHHHHhcccCC
Confidence 221 111 1289999999998887654311 13
Q ss_pred CCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCC-----CCcHHHHHHHHHHHHhcCCCCcEEE
Q psy15555 287 DGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRN-----EEDEVCVKDMQDLCKHLSLENNVEF 361 (488)
Q Consensus 287 ~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~-----~~~~~~~~~l~~~~~~~~l~~~v~~ 361 (488)
.++++++++|++.+.||++.+++|++.+.+.. ++++|+|+|++++ .++.+..++++++++++++.++|.|
T Consensus 570 ~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~-----~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~f 644 (816)
T 3s28_A 570 KKKPILFTMARLDRVKNLSGLVEWYGKNTRLR-----ELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRW 644 (816)
T ss_dssp TTSCEEEEECCCCTTTTHHHHHHHHHHCHHHH-----HHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEE
T ss_pred CCCeEEEEEccCcccCCHHHHHHHHHHHHhhC-----CCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEE
Confidence 56789999999999999999999999998877 7999999999972 1123466889999999999999999
Q ss_pred ecCC----ChHHHHHHHH-hCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHH
Q psy15555 362 KVNL----PYEDMKKEFS-EGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVE 434 (488)
Q Consensus 362 ~g~~----~~~el~~~~~-~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~ 434 (488)
+|.+ +.+|+..+|+ .||++|.||..|+||++++|||+||+|||+++.+|.. |++.++ .+|++++ |+++
T Consensus 645 lG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~-EiV~dg----~~Gllv~p~D~e~ 719 (816)
T 3s28_A 645 ISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPA-EIIVHG----KSGFHIDPYHGDQ 719 (816)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHH-HHCCBT----TTBEEECTTSHHH
T ss_pred ccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCCChH-HHHccC----CcEEEeCCCCHHH
Confidence 9955 4589999998 5799999999999999999999999999999999997 999888 8999987 8999
Q ss_pred HHHHHHHHH----ccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHh
Q psy15555 435 YAQTIKLIL----HLSQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQPL 480 (488)
Q Consensus 435 l~~~i~~ll----~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~~~ 480 (488)
++++|.+++ . |++.+++++++|++.+ ++|||+.+++++.++|+.+
T Consensus 720 LA~aI~~lL~~Ll~-d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~ 769 (816)
T 3s28_A 720 AADTLADFFTKCKE-DPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVY 769 (816)
T ss_dssp HHHHHHHHHHHHHH-CTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 999997766 7 9999999999999999 9999999999999999865
No 11
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=1.1e-36 Score=306.18 Aligned_cols=400 Identities=12% Similarity=0.070 Sum_probs=261.2
Q ss_pred cEEEEeccCCCC---CCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhh-----h--------ccc--cc
Q psy15555 53 KTVAFFHPYCNA---GGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ-----R--------FNI--VL 114 (488)
Q Consensus 53 ~rI~~~~~~~~~---~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~--------~~~--~~ 114 (488)
|||+++++.+.+ .||.++++..++++|.++| ++|.+++...+ ........ . ... ..
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G--~~V~vi~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHG--VRTRTLIPGYP----AVKAAVTDPVKCFEFTDLLGEKADLLEVQ 74 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTT--CEEEEEEECCH----HHHHHCCSCEEEEEESCSSSCCEEEEEEE
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHcC--CeEEEEecccc----cccccccccceeEEEEEecCCeEEEEEEE
Confidence 899999876543 5789999999999999985 45555444311 11111000 0 000 00
Q ss_pred CCCeeEEEEeeccceeecc--Cch---------hHHHHHHHHHHHHHHHHHh-hhcCCcEEEecCCccchhhhh-hhh--
Q psy15555 115 PDQVINFVYLYRRKFVEAS--LYP---------YFTLLGQSIGSMILGVEAL-LSFQPDIYIDTMGYAFTYPLF-SYI-- 179 (488)
Q Consensus 115 ~~~~v~~~~~~~~~~~~~~--~~~---------~~~~~~~~~~~~~~~~~~l-~~~~pDiii~~~~~~~~~~~~-~~~-- 179 (488)
..+ +.+..++......+. .+. ....+...........+.+ ++.+|||||.+...+..++.+ +..
T Consensus 75 ~~g-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~ 153 (485)
T 1rzu_A 75 HER-LDLLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAAMTPVYMRYAET 153 (485)
T ss_dssp ETT-EEEEEEECHHHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHHHTTHHHHHHHSSS
T ss_pred ecC-ceEEEEeChHHhCCCccccCCcccccccchHHHHHHHHHHHHHHHHHhccCCCCCEEEecccchhHHHHHHhhccc
Confidence 123 666655443211111 110 0000000111111122222 467999999876433333332 222
Q ss_pred CCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHH
Q psy15555 180 GGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQL 259 (488)
Q Consensus 180 ~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~ 259 (488)
.++|++.++|............... .+ +... ........++ ....+++..++.+|.++++|+..++.+.+.
T Consensus 154 ~~~p~v~t~H~~~~~~~~~~~~~~~---~~----~~~~-~~~~~~~~~~-~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~ 224 (485)
T 1rzu_A 154 PEIPSLLTIHNIAFQGQFGANIFSK---LA----LPAH-AFGMEGIEYY-NDVSFLKGGLQTATALSTVSPSYAEEILTA 224 (485)
T ss_dssp CCCCEEEEESCTTCCCEECGGGGGG---SC----CCGG-GSSTTTTEET-TEEEHHHHHHHHCSEEEESCHHHHHHTTSH
T ss_pred CCCCEEEEecCccccCCCCHHHHhh---cC----CChh-hccccccccc-ccccHHHHHHhhcCEEEecCHhHHHHHhcc
Confidence 6899999999753210000000000 00 0000 0000000000 000133456678999999999999999774
Q ss_pred -hc---------cCCceEEEcCCCCchhhhccCCC--------------------------CCC-CCeEEEEeeccCCCC
Q psy15555 260 -WN---------CQLKTYKLYPPCDTEDLKKITHS--------------------------KTD-GPVKIISVAQFRPEK 302 (488)
Q Consensus 260 -~~---------~~~k~~vi~~~~d~~~~~~~~~~--------------------------~~~-~~~~i~~~g~~~~~k 302 (488)
++ .+.++.+++||+|.+.+.+.... ... +.++++++|++.+.|
T Consensus 225 ~~g~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~vGrl~~~K 304 (485)
T 1rzu_A 225 EFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQK 304 (485)
T ss_dssp HHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCCCSSSCEEEEESCBSTTT
T ss_pred ccCcchHHHHHhhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcCCCCCCCeEEEEEccCcccc
Confidence 33 34589999999998877554311 112 256999999999999
Q ss_pred ChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEE-EecCCChHHHHHHHHhCcEEE
Q psy15555 303 DHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVE-FKVNLPYEDMKKEFSEGLIGL 381 (488)
Q Consensus 303 ~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~~~el~~~~~~ad~~v 381 (488)
|++.+++|++.+.+ ++++|+|+|+++. ++.+++++++++++ ++|+ +.|. +.+++..+|+.||++|
T Consensus 305 g~~~li~a~~~l~~-------~~~~l~ivG~g~~----~~~~~l~~~~~~~~--~~v~~~~g~-~~~~~~~~~~~adv~v 370 (485)
T 1rzu_A 305 GIDLMAEAVDEIVS-------LGGRLVVLGAGDV----ALEGALLAAASRHH--GRVGVAIGY-NEPLSHLMQAGCDAII 370 (485)
T ss_dssp THHHHHTTHHHHHH-------TTCEEEEEECBCH----HHHHHHHHHHHHTT--TTEEEEESC-CHHHHHHHHHHCSEEE
T ss_pred CHHHHHHHHHHHHh-------cCceEEEEeCCch----HHHHHHHHHHHhCC--CcEEEecCC-CHHHHHHHHhcCCEEE
Confidence 99999999999975 4889999999851 35578888888875 6787 7888 7788899999999999
Q ss_pred EcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCC------ccccceecC--CHHHHHHHHHHHH---ccCHHHH
Q psy15555 382 HAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPE------TCRNGFLAC--DEVEYAQTIKLIL---HLSQDTK 450 (488)
Q Consensus 382 ~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~------~~~~g~~~~--~~~~l~~~i~~ll---~~~~~~~ 450 (488)
+||..|++|++++|||++|+|||+++.+|.. |++.++ . ...+|++++ |+++++++|.+++ + |++.+
T Consensus 371 ~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~-e~v~~~-~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~-~~~~~ 447 (485)
T 1rzu_A 371 IPSRFEPCGLTQLYALRYGCIPVVARTGGLA-DTVIDA-NHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYH-DPKLW 447 (485)
T ss_dssp ECCSCCSSCSHHHHHHHHTCEEEEESSHHHH-HHCCBC-CHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHHHT-CHHHH
T ss_pred ECcccCCCCHHHHHHHHCCCCEEEeCCCChh-heeccc-ccccccccCCcceEeCCCCHHHHHHHHHHHHHHhC-CHHHH
Confidence 9999999999999999999999999999886 888652 0 003788876 9999999999999 7 99999
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhccC
Q psy15555 451 TRISQNAVSSVDRFSMEEFKNGFLTFTQPLFKVMKKS 487 (488)
Q Consensus 451 ~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~~~~~s 487 (488)
+++++++++ ++|||+.+++++.++|++++.....+
T Consensus 448 ~~~~~~~~~--~~fs~~~~~~~~~~~y~~~~~~~~~~ 482 (485)
T 1rzu_A 448 TQMQKLGMK--SDVSWEKSAGLYAALYSQLISKGHHH 482 (485)
T ss_dssp HHHHHHHHT--CCCBHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHH--HhCChHHHHHHHHHHHHHhhCCCCCc
Confidence 999999875 89999999999999999998866553
No 12
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=2.8e-36 Score=303.24 Aligned_cols=399 Identities=13% Similarity=0.059 Sum_probs=261.4
Q ss_pred cEEEEeccCCCC---CCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhh--------cc--ccc----C
Q psy15555 53 KTVAFFHPYCNA---GGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQR--------FN--IVL----P 115 (488)
Q Consensus 53 ~rI~~~~~~~~~---~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------~~--~~~----~ 115 (488)
|||+++++.+.+ .||.++++..++++|.++| ++|.+++...+ ......... ++ ..+ .
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G--~~V~vi~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADG--VDARVLLPAFP----DIRRGVTDAQVVSRRDTFAGHITLLFGHY 74 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTT--CEEEEEEECCH----HHHHHCTTCEEEEEECCTTCCEEEEEEEE
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHHcC--CEEEEEecCcc----ccccccccceeEEEecccCCcEEEEEEEE
Confidence 899999876543 5789999999999999995 44555444321 111110000 00 000 1
Q ss_pred CCeeEEEEeeccceeecc--Cch------hHHHHHHHHHHHHHHHHHhhh----cCCcEEEecCCccchhhhh-h-hhCC
Q psy15555 116 DQVINFVYLYRRKFVEAS--LYP------YFTLLGQSIGSMILGVEALLS----FQPDIYIDTMGYAFTYPLF-S-YIGG 181 (488)
Q Consensus 116 ~~~v~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~~~~~~~l~~----~~pDiii~~~~~~~~~~~~-~-~~~~ 181 (488)
.+ +.+..++......+. .+. +.............+.++++. .+|||||.+...+..++.+ + ...+
T Consensus 75 ~g-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~~~~~~~~~~~ 153 (485)
T 2qzs_A 75 NG-VGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRP 153 (485)
T ss_dssp TT-EEEEEEECHHHHCCSSCSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSSTTCCCSEEEEETGGGTTHHHHHHHTTCS
T ss_pred CC-cEEEEEeChhhccCCCCccCCcccCCCCchHHHHHHHHHHHHHHHHHhccCCCCCEEEeeccchhHHHHHHhhccCC
Confidence 23 666655432211111 110 000000000111223444543 7899999876444444433 2 2568
Q ss_pred CeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHH-h
Q psy15555 182 SKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQL-W 260 (488)
Q Consensus 182 ~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-~ 260 (488)
+|++.++|............... ..... ..+..... .. .....+++..++.+|.++++|+.+++.+.+. +
T Consensus 154 ~p~v~t~H~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~-~~------~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~ 224 (485)
T 2qzs_A 154 AKSVFTVHNLAYQGMFYAHHMND-IQLPW-SFFNIHGL-EF------NGQISFLKAGLYYADHITAVSPTYAREITEPQF 224 (485)
T ss_dssp SEEEEEESCTTCCCEEEGGGGGT-TTCCG-GGCSTTTT-EE------TTEEEHHHHHHHHCSEEEESSHHHHHHTTSHHH
T ss_pred CCEEEEecCccccCCCCHHHHHh-cCCCc-hhcccccc-cc------cccccHHHHHHHhcCeEEecCHHHHHHHhcccc
Confidence 99999999753210000000000 00000 00000000 00 0001133456678999999999999998764 3
Q ss_pred cc---------C--CceEEEcCCCCchhhhccCCC--------------------------CC--CCCeEEEEeeccCCC
Q psy15555 261 NC---------Q--LKTYKLYPPCDTEDLKKITHS--------------------------KT--DGPVKIISVAQFRPE 301 (488)
Q Consensus 261 ~~---------~--~k~~vi~~~~d~~~~~~~~~~--------------------------~~--~~~~~i~~~g~~~~~ 301 (488)
+. + .++.+++|++|.+.+.+.... .. .+.++++++|++.+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~vGrl~~~ 304 (485)
T 2qzs_A 225 AYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQ 304 (485)
T ss_dssp HTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHHTCCCCTTSCEEEEEEEESGG
T ss_pred CcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccchhHHHHhHHHHHHHcCCCCCCCCeEEEEeccCccc
Confidence 31 2 689999999998877553211 11 256899999999999
Q ss_pred CChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEE-EecCCChHHHHHHHHhCcEE
Q psy15555 302 KDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVE-FKVNLPYEDMKKEFSEGLIG 380 (488)
Q Consensus 302 k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~~~el~~~~~~ad~~ 380 (488)
||++.+++|++.+.+ ++++|+|+|.++. ++.+++++++++++ ++|. +.|. +.+++..+|+.||++
T Consensus 305 Kg~~~li~a~~~l~~-------~~~~l~ivG~g~~----~~~~~l~~~~~~~~--~~v~~~~g~-~~~~~~~~~~~adv~ 370 (485)
T 2qzs_A 305 KGLDLVLEALPGLLE-------QGGQLALLGAGDP----VLQEGFLAAAAEYP--GQVGVQIGY-HEAFSHRIMGGADVI 370 (485)
T ss_dssp GCHHHHHHHHHHHHH-------TTCEEEEEEEECH----HHHHHHHHHHHHST--TTEEEEESC-CHHHHHHHHHHCSEE
T ss_pred cCHHHHHHHHHHHhh-------CCcEEEEEeCCch----HHHHHHHHHHHhCC--CcEEEeCCC-CHHHHHHHHHhCCEE
Confidence 999999999999875 4789999999852 35588888888875 6786 7888 788889999999999
Q ss_pred EEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCC-----CccccceecC--CHHHHHHHHHHHH---ccCHHHH
Q psy15555 381 LHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDP-----ETCRNGFLAC--DEVEYAQTIKLIL---HLSQDTK 450 (488)
Q Consensus 381 v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~-----~~~~~g~~~~--~~~~l~~~i~~ll---~~~~~~~ 450 (488)
|+||..|++|++++|||++|+|||+++.+|.. |++.+++ ....+|++++ |+++++++|.+++ + |++.+
T Consensus 371 v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~-e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~-~~~~~ 448 (485)
T 2qzs_A 371 LVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLA-DTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWS-RPSLW 448 (485)
T ss_dssp EECCSCCSSCSHHHHHHHHTCEEEEESSHHHH-HHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHHHHT-SHHHH
T ss_pred EECCccCCCcHHHHHHHHCCCCEEECCCCCcc-ceeccCccccccccccceEEECCCCHHHHHHHHHHHHHHcC-CHHHH
Confidence 99999999999999999999999999999886 8886520 0003789886 9999999999999 7 99999
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhc
Q psy15555 451 TRISQNAVSSVDRFSMEEFKNGFLTFTQPLFKVMK 485 (488)
Q Consensus 451 ~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 485 (488)
+++++++++ ++|||+.+++++.++|+++.....
T Consensus 449 ~~~~~~~~~--~~fs~~~~~~~~~~ly~~~~~~~~ 481 (485)
T 2qzs_A 449 RFVQRQAMA--MDFSWQVAAKSYRELYYRLKLEHH 481 (485)
T ss_dssp HHHHHHHHH--CCCCHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHh--hcCCHHHHHHHHHHHHHHhhhhhc
Confidence 999999875 899999999999999999876543
No 13
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=8.2e-36 Score=285.98 Aligned_cols=310 Identities=12% Similarity=0.022 Sum_probs=244.9
Q ss_pred ccEEEEeccC--------C---C--CCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCe
Q psy15555 52 LKTVAFFHPY--------C---N--AGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQV 118 (488)
Q Consensus 52 ~~rI~~~~~~--------~---~--~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (488)
+|||+++.+. + . ..||.++++..++++|.++ +++|.+++........ ..
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~--G~~v~v~~~~~~~~~~---------------~~- 64 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLEL--GHEVFLLGAPGSPAGR---------------PG- 64 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHT--TCEEEEESCTTSCCCS---------------TT-
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHc--CCeEEEEecCCCCCCC---------------Cc-
Confidence 5999999877 1 2 3478899999999999998 5667777665332210 11
Q ss_pred eEEEEeeccceeeccCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhhhhhCCCeeEEEEeCCccchHHH
Q psy15555 119 INFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEML 198 (488)
Q Consensus 119 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~ 198 (488)
+.+... ..+ ..+.+.+++.+||+||.+...+... . ....++| +.+.|......
T Consensus 65 ~~~~~~--~~~-------------------~~l~~~l~~~~~Dvi~~~~~~~~~~-~-~~~~~~p-v~~~h~~~~~~--- 117 (342)
T 2iuy_A 65 LTVVPA--GEP-------------------EEIERWLRTADVDVVHDHSGGVIGP-A-GLPPGTA-FISSHHFTTRP--- 117 (342)
T ss_dssp EEECSC--CSH-------------------HHHHHHHHHCCCSEEEECSSSSSCS-T-TCCTTCE-EEEEECSSSBC---
T ss_pred ceeccC--CcH-------------------HHHHHHHHhcCCCEEEECCchhhHH-H-HhhcCCC-EEEecCCCCCc---
Confidence 222111 100 1355677888999999877554332 2 2356889 99999654100
Q ss_pred HHHHhhhhcccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhh
Q psy15555 199 TRVARRVITHNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDL 278 (488)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~ 278 (488)
..+|.++++|+..++.+.+ ..++.+++|++|.+.+
T Consensus 118 -----------------------------------------~~~d~ii~~S~~~~~~~~~----~~~~~vi~ngvd~~~~ 152 (342)
T 2iuy_A 118 -----------------------------------------VNPVGCTYSSRAQRAHCGG----GDDAPVIPIPVDPARY 152 (342)
T ss_dssp -----------------------------------------SCCTTEEESCHHHHHHTTC----CTTSCBCCCCBCGGGS
T ss_pred -----------------------------------------ccceEEEEcCHHHHHHHhc----CCceEEEcCCCChhhc
Confidence 0179999999999998876 4578999999998877
Q ss_pred hccCCCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCc
Q psy15555 279 KKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENN 358 (488)
Q Consensus 279 ~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~ 358 (488)
.+..... .++++++++|++.+.||++.+++|++.+ +++|+|+|.++.. +++++++++++ ++
T Consensus 153 ~~~~~~~-~~~~~i~~vG~~~~~Kg~~~li~a~~~~----------~~~l~i~G~g~~~------~~l~~~~~~~~--~~ 213 (342)
T 2iuy_A 153 RSAADQV-AKEDFLLFMGRVSPHKGALEAAAFAHAC----------GRRLVLAGPAWEP------EYFDEITRRYG--ST 213 (342)
T ss_dssp CCSTTCC-CCCSCEEEESCCCGGGTHHHHHHHHHHH----------TCCEEEESCCCCH------HHHHHHHHHHT--TT
T ss_pred CcccccC-CCCCEEEEEeccccccCHHHHHHHHHhc----------CcEEEEEeCcccH------HHHHHHHHHhC--CC
Confidence 6554322 3456899999999999999999999876 5689999998743 66777777776 78
Q ss_pred EEEecCCChHHHHHHHHhCcEEEEcCC----------CCcCCccHHHHHHcCCcEEEeCCCCCccceecc--CCCccccc
Q psy15555 359 VEFKVNLPYEDMKKEFSEGLIGLHAMW----------NEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIE--DPETCRNG 426 (488)
Q Consensus 359 v~~~g~~~~~el~~~~~~ad~~v~~s~----------~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~--~~~~~~~g 426 (488)
|+++|+++++|+.++|+.||+++.||. .|++|++++|||++|+|||+++.++.. |++.+ + .+|
T Consensus 214 v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~~~~-e~~~~~~~----~~g 288 (342)
T 2iuy_A 214 VEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNGCLA-EIVPSVGE----VVG 288 (342)
T ss_dssp EEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTTTHH-HHGGGGEE----ECC
T ss_pred EEEeccCCHHHHHHHHHhCCEEEECCcccccccccccccCccHHHHHHHhcCCCEEEcCCCChH-HHhcccCC----Cce
Confidence 999999999999999999999999999 899999999999999999999999886 99988 7 789
Q ss_pred eecC-CHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHhhhhh
Q psy15555 427 FLAC-DEVEYAQTIKLILHLSQDTKTRISQNAVSSV-DRFSMEEFKNGFLTFTQPLFKVM 484 (488)
Q Consensus 427 ~~~~-~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~~~~~~~~~ 484 (488)
++++ |+++++++|.++++ ++++++.+ ++|||+.+++++.++|+++++..
T Consensus 289 ~~~~~d~~~l~~~i~~l~~---------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 339 (342)
T 2iuy_A 289 YGTDFAPDEARRTLAGLPA---------SDEVRRAAVRLWGHVTIAERYVEQYRRLLAGA 339 (342)
T ss_dssp SSSCCCHHHHHHHHHTSCC---------HHHHHHHHHHHHBHHHHHHHHHHHHHHHHTTC
T ss_pred EEcCCCHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHHHHHHHHccC
Confidence 9988 99999999999874 66778877 99999999999999999998753
No 14
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=7.1e-34 Score=285.59 Aligned_cols=227 Identities=15% Similarity=0.130 Sum_probs=185.1
Q ss_pred HHHHhcccCEEEEcChhHHHHHHHHhcc---------CCceEEEcCCCCchhhhccCCC---------------------
Q psy15555 235 YSHVGKYSDIIMVNSSWTEEHVIQLWNC---------QLKTYKLYPPCDTEDLKKITHS--------------------- 284 (488)
Q Consensus 235 ~~~~~~~~d~ii~~s~~~~~~~~~~~~~---------~~k~~vi~~~~d~~~~~~~~~~--------------------- 284 (488)
.+..+..||.|+++|+..++.+.+.++. ..++.+|+||+|.+.+.+....
T Consensus 235 ~k~~i~~ad~v~tVS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~ 314 (536)
T 3vue_A 235 MKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEA 314 (536)
T ss_dssp HHHHHHHCSEEEESCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHH
T ss_pred HHHHHHhccEEEEcCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHH
Confidence 3446677999999999999998775431 2479999999999888764311
Q ss_pred --------CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCC
Q psy15555 285 --------KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLE 356 (488)
Q Consensus 285 --------~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~ 356 (488)
..++.++|+++||+.++||++.+++|+.++.+ .+.+++++|.|+. +..+.++.....+ +
T Consensus 315 l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~-------~~~~l~l~G~G~~----~~~~~~~~~~~~~--~ 381 (536)
T 3vue_A 315 LQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQ-------EDVQIVLLGTGKK----KFEKLLKSMEEKY--P 381 (536)
T ss_dssp HHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTT-------SSCEEEEECCBCH----HHHHHHHHHHHHS--T
T ss_pred HHHhcCCCCCCCCcEEEEEeeccccCChHHHHHHHHHhHh-------hCCeEEEEeccCc----hHHHHHHHHHhhc--C
Confidence 12467899999999999999999999999975 4678999998852 3335555555554 4
Q ss_pred CcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccce---------
Q psy15555 357 NNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGF--------- 427 (488)
Q Consensus 357 ~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~--------- 427 (488)
+++.+.+..+.+++..+|+.||+||+||..|+||++++|||+||+|||+++.+|.. |++.++ .+|+
T Consensus 382 ~~v~~~~~~~~~~~~~~~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~~-e~V~dg----~~G~~~~~~~~~g 456 (536)
T 3vue_A 382 GKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLV-DTVIEG----KTGFHMGRLSVDC 456 (536)
T ss_dssp TTEEEECSCCHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHTTCCEEECSCTHHH-HHCCBT----TTEEECCCCCSCT
T ss_pred CceEEEEeccHHHHHHHHHhhheeecccccCCCCHHHHHHHHcCCCEEEcCCCCch-heeeCC----CCccccccCCCce
Confidence 67999999999999999999999999999999999999999999999999999997 999988 7776
Q ss_pred -ecC--CHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhh
Q psy15555 428 -LAC--DEVEYAQTIKLILHL-SQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLF 481 (488)
Q Consensus 428 -~~~--~~~~l~~~i~~ll~~-~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~ 481 (488)
+++ |+++|+++|.+++.. +.+.++++++++.+ ++|||++.+++|.++|+++.
T Consensus 457 ~l~~~~d~~~la~ai~ral~~~~~~~~~~~~~~am~--~~fSW~~~A~~y~~ly~~L~ 512 (536)
T 3vue_A 457 KVVEPSDVKKVAATLKRAIKVVGTPAYEEMVRNCMN--QDLSWKGPAKNWENVLLGLG 512 (536)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHH--SCCSSHHHHHHHHHHHHTTC
T ss_pred eEECCCCHHHHHHHHHHHHHhcCcHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHhh
Confidence 454 789999999887641 33456777776643 78999999999999999874
No 15
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=100.00 E-value=3.6e-33 Score=272.49 Aligned_cols=217 Identities=18% Similarity=0.131 Sum_probs=169.7
Q ss_pred HHHhcccC--EEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCCCCCCCeEEEEeecc-CCCCChHHHHHHHH
Q psy15555 236 SHVGKYSD--IIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKIISVAQF-RPEKDHPLQLRAMY 312 (488)
Q Consensus 236 ~~~~~~~d--~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~~~~~~~~i~~~g~~-~~~k~~~~ll~a~~ 312 (488)
+...+.++ .++++|+++++.+.+.+....++.+++|++|.+.+..... ...++..++++||+ .+.||++.+++|++
T Consensus 187 ~~~~~~~~~~~vi~~S~~~~~~l~~~g~~~~~~~~i~~g~d~~~~~~~~~-~~~~~~~il~~gr~~~~~Kg~~~li~A~~ 265 (413)
T 2x0d_A 187 ESTYKYRGPQIAVFNSELLKQYFNNKGYNFTDEYFFQPKINTTLKNYIND-KRQKEKIILVYGRPSVKRNAFTLIVEALK 265 (413)
T ss_dssp HHTTSCCSCEEEEEESHHHHHHHHHHTCCCSEEEEECCCCCHHHHTTTTS-CCCCCSEEEEEECTTCGGGCHHHHHHHHH
T ss_pred HHHhccCCceEEEEcCHHHHHHHHHcCCCCCceEEeCCCcCchhhccccc-ccCCCCEEEEEecCchhccCHHHHHHHHH
Confidence 34555554 6899999999999986332357889999999876543221 22345678899996 57899999999999
Q ss_pred HhHHhhhhhccCc---eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcC
Q psy15555 313 QLRQIISEELWDN---LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHF 389 (488)
Q Consensus 313 ~l~~~~~~~~~~~---~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~ 389 (488)
.+.++. |+ ++|+++|.++.. .++++.++|+|+|.++.+|+.++|+.||+|++||..|++
T Consensus 266 ~l~~~~-----~~~~~~~l~ivG~~~~~-------------~~l~~~~~v~f~G~~~~~~l~~~~~~adv~v~pS~~E~~ 327 (413)
T 2x0d_A 266 IFVQKY-----DRSNEWKIISVGEKHKD-------------IALGKGIHLNSLGKLTLEDYADLLKRSSIGISLMISPHP 327 (413)
T ss_dssp HHHHHC-----TTGGGCEEEEEESCCCC-------------EEEETTEEEEEEESCCHHHHHHHHHHCCEEECCCSSSSC
T ss_pred HHHHhC-----CCCCceEEEEEcCCchh-------------hhcCCcCcEEEcCCCCHHHHHHHHHhCCEEEEecCCCCC
Confidence 998776 54 899999998632 245667789999999999999999999999999999999
Q ss_pred CccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHH
Q psy15555 390 GIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSME 467 (488)
Q Consensus 390 g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~ 467 (488)
|++++||||||+|||+++ +|.. |++.++ .+|++++ |+++++++|.++++ |++.+++ ++++.+++|||+
T Consensus 328 g~~~lEAmA~G~PVV~~~-~g~~-e~v~~~----~~G~lv~~~d~~~la~ai~~ll~-~~~~~~~---~~~~~~~~~~W~ 397 (413)
T 2x0d_A 328 SYPPLEMAHFGLRVITNK-YENK-DLSNWH----SNIVSLEQLNPENIAETLVELCM-SFNNRDV---DKKESSNMMFYI 397 (413)
T ss_dssp CSHHHHHHHTTCEEEEEC-BTTB-CGGGTB----TTEEEESSCSHHHHHHHHHHHHH-HTC----------CCBSCGGGC
T ss_pred CcHHHHHHhCCCcEEEeC-CCcc-hhhhcC----CCEEEeCCCCHHHHHHHHHHHHc-CHHHHHH---hHHHHHHhCCHH
Confidence 999999999999999954 5665 899888 8999876 99999999999999 8887776 566666889999
Q ss_pred HHHHHHHHHHHHhhh
Q psy15555 468 EFKNGFLTFTQPLFK 482 (488)
Q Consensus 468 ~~~~~~~~~~~~~~~ 482 (488)
...++ .+++++++.
T Consensus 398 ~~~~~-~~~~~~l~~ 411 (413)
T 2x0d_A 398 NEFNE-FSFIKEIEE 411 (413)
T ss_dssp CCC----TTHHHHHT
T ss_pred HHHHH-HHHHHHHHh
Confidence 99888 677777654
No 16
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.97 E-value=7.8e-31 Score=256.29 Aligned_cols=246 Identities=11% Similarity=0.058 Sum_probs=187.9
Q ss_pred CCcEEEecCCccchhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHHHHHHHHHHH
Q psy15555 159 QPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFALLYSHV 238 (488)
Q Consensus 159 ~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (488)
++|+||....+...+..+....++|++...|....... .. ........++..
T Consensus 124 ~~DvIh~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~-----------------------~~-----~~~~~~~~~~~~ 175 (406)
T 2hy7_A 124 ESDVIVFESGIAVAFIELAKRVNPAAKLVYRASDGLST-----------------------IN-----VASYIEREFDRV 175 (406)
T ss_dssp HCSEEEEESSGGGGGHHHHHHHCTTSEEEEEESSCHHH-----------------------HT-----CCHHHHHHHHHH
T ss_pred CCCEEEECCchHHHHHHHHHHhCCCEEEEEeccchhhc-----------------------cc-----ccHHHHHHHHHH
Confidence 69998844333322112222568899988885431000 00 011223456678
Q ss_pred hcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhh
Q psy15555 239 GKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQII 318 (488)
Q Consensus 239 ~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~ 318 (488)
++.+|.++++|+.+++.+.+.+ ++.+++|++|.+.+.+......+++++++|+|++.+.||+ +..+.+..
T Consensus 176 ~~~ad~vi~~S~~~~~~~~~~~----~i~vipngvd~~~f~~~~~~~~~~~~~i~~vGrl~~~Kg~------~~~l~~~~ 245 (406)
T 2hy7_A 176 APTLDVIALVSPAMAAEVVSRD----NVFHVGHGVDHNLDQLGDPSPYAEGIHAVAVGSMLFDPEF------FVVASKAF 245 (406)
T ss_dssp GGGCSEEEESCGGGGGGCSCST----TEEECCCCBCTTHHHHHCSCSCCSSEEEEEECCTTBCHHH------HHHHHHHC
T ss_pred HHhCCEEEEcCHHHHHHHHhcC----CEEEEcCCcChHhcCcccccccCCCcEEEEEeccccccCH------HHHHHHhC
Confidence 8999999999999999887643 7999999999888866543222334899999999999997 34444455
Q ss_pred hhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHH-
Q psy15555 319 SEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECM- 397 (488)
Q Consensus 319 ~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~- 397 (488)
++++|+|+|+|+ ++++++.++|+|+|.++.+|+..+|+.||+++.||..|++|++++|||
T Consensus 246 -----~~~~l~ivG~g~--------------~~~~~l~~~V~f~G~~~~~~l~~~~~~adv~v~ps~~E~~~~~~lEAm~ 306 (406)
T 2hy7_A 246 -----PQVTFHVIGSGM--------------GRHPGYGDNVIVYGEMKHAQTIGYIKHARFGIAPYASEQVPVYLADSSM 306 (406)
T ss_dssp -----TTEEEEEESCSS--------------CCCTTCCTTEEEECCCCHHHHHHHHHTCSEEECCBSCSCCCTTHHHHCH
T ss_pred -----CCeEEEEEeCch--------------HHhcCCCCCEEEcCCCCHHHHHHHHHhcCEEEECCCcccCchHHHHHHH
Confidence 899999999874 455677889999999999999999999999999999999999999999
Q ss_pred ------HcCCcEEEeCCCCCccceeccCCCcccccee-cC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHH
Q psy15555 398 ------AAGLIMIAHKSGGPKMDIVIEDPETCRNGFL-AC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEE 468 (488)
Q Consensus 398 ------a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~-~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~ 468 (488)
+||+|||+++. +.++ .+|++ ++ |+++++++|.++++ +++ ++..++|||+.
T Consensus 307 Kl~eYla~G~PVIas~~-------v~~~----~~G~l~v~~~d~~~la~ai~~ll~-~~~---------~~~~~~~sw~~ 365 (406)
T 2hy7_A 307 KLLQYDFFGLPAVCPNA-------VVGP----YKSRFGYTPGNADSVIAAITQALE-APR---------VRYRQCLNWSD 365 (406)
T ss_dssp HHHHHHHHTCCEEEEGG-------GTCS----CSSEEEECTTCHHHHHHHHHHHHH-CCC---------CCCSCCCBHHH
T ss_pred HHHHHhhCCCcEEEehh-------cccC----cceEEEeCCCCHHHHHHHHHHHHh-Ccc---------hhhhhcCCHHH
Confidence 99999999986 4445 67888 65 99999999999998 766 12238999999
Q ss_pred HHHHHHHH--HHHhhh
Q psy15555 469 FKNGFLTF--TQPLFK 482 (488)
Q Consensus 469 ~~~~~~~~--~~~~~~ 482 (488)
+++++.++ |+++..
T Consensus 366 ~a~~~~~~~~y~~~~~ 381 (406)
T 2hy7_A 366 TTDRVLDPRAYPETRL 381 (406)
T ss_dssp HHHHHHCGGGSGGGBS
T ss_pred HHHHHHHhhcccccCc
Confidence 99999999 776543
No 17
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.97 E-value=1.4e-29 Score=244.75 Aligned_cols=336 Identities=11% Similarity=0.058 Sum_probs=232.6
Q ss_pred ccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceee
Q psy15555 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVE 131 (488)
Q Consensus 52 ~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 131 (488)
.|||+++.. ..||.++.+..++++|.++ +++|.+++...+. .....+. .+ +.+..++......
T Consensus 6 ~mkIl~~~~---~~gG~~~~~~~la~~L~~~--G~~V~v~~~~~~~-~~~~~~~----------~g-~~~~~~~~~~~~~ 68 (364)
T 1f0k_A 6 GKRLMVMAG---GTGGHVFPGLAVAHHLMAQ--GWQVRWLGTADRM-EADLVPK----------HG-IEIDFIRISGLRG 68 (364)
T ss_dssp -CEEEEECC---SSHHHHHHHHHHHHHHHTT--TCEEEEEECTTST-HHHHGGG----------GT-CEEEECCCCCCTT
T ss_pred CcEEEEEeC---CCccchhHHHHHHHHHHHc--CCEEEEEecCCcc-hhhhccc----------cC-CceEEecCCccCc
Confidence 389999863 3457888899999999998 5666676665321 1111100 12 4444444322111
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhh-hhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccC
Q psy15555 132 ASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP-LFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNN 210 (488)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~-~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~ 210 (488)
......+......+.......+.+++.+||+||.+..++.... .+....++|++...|...
T Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~------------------ 130 (364)
T 1f0k_A 69 KGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNGI------------------ 130 (364)
T ss_dssp CCHHHHHTCHHHHHHHHHHHHHHHHHHCCSEEEECSSTTHHHHHHHHHHTTCCEEEEECSSS------------------
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcCchHHHHHHHHcCCCEEEEecCCC------------------
Confidence 1111111111222334455677888899999998865543322 333356899988777431
Q ss_pred ccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCC----CCC
Q psy15555 211 SQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITH----SKT 286 (488)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~----~~~ 286 (488)
... ..+.+.+.+|.+++.++.. + + ++.+++|+++.+.+.+... ...
T Consensus 131 ---------~~~-----------~~~~~~~~~d~v~~~~~~~-------~--~-~~~~i~n~v~~~~~~~~~~~~~~~~~ 180 (364)
T 1f0k_A 131 ---------AGL-----------TNKWLAKIATKVMQAFPGA-------F--P-NAEVVGNPVRTDVLALPLPQQRLAGR 180 (364)
T ss_dssp ---------CCH-----------HHHHHTTTCSEEEESSTTS-------S--S-SCEECCCCCCHHHHTSCCHHHHHTTC
T ss_pred ---------CcH-----------HHHHHHHhCCEEEecChhh-------c--C-CceEeCCccchhhcccchhhhhcccC
Confidence 000 1223556789999998764 2 2 5789999999776543210 122
Q ss_pred CCCe-EEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceE-EEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC
Q psy15555 287 DGPV-KIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLK-LIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN 364 (488)
Q Consensus 287 ~~~~-~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~-l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 364 (488)
.+++ +++++|++.+.|+.+.+++|++.+.+ +++ ++++|.++ .+++++.++++++ ++|.+.|+
T Consensus 181 ~~~~~il~~~g~~~~~k~~~~li~a~~~l~~--------~~~~l~i~G~~~-------~~~l~~~~~~~~~-~~v~~~g~ 244 (364)
T 1f0k_A 181 EGPVRVLVVGGSQGARILNQTMPQVAAKLGD--------SVTIWHQSGKGS-------QQSVEQAYAEAGQ-PQHKVTEF 244 (364)
T ss_dssp CSSEEEEEECTTTCCHHHHHHHHHHHHHHGG--------GEEEEEECCTTC-------HHHHHHHHHHTTC-TTSEEESC
T ss_pred CCCcEEEEEcCchHhHHHHHHHHHHHHHhcC--------CcEEEEEcCCch-------HHHHHHHHhhcCC-CceEEecc
Confidence 3444 55666789899999999999998842 466 56788775 1678888888886 47999999
Q ss_pred CChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCcc-------ceeccCCCccccceecC--C--HH
Q psy15555 365 LPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKM-------DIVIEDPETCRNGFLAC--D--EV 433 (488)
Q Consensus 365 ~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~-------eiv~~~~~~~~~g~~~~--~--~~ 433 (488)
+ +++..+|+.||++|.||. |++++|||++|+|||+++.+|... ++++++ .|++++ | ++
T Consensus 245 ~--~~~~~~~~~ad~~v~~sg----~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~g-----~g~~~~~~d~~~~ 313 (364)
T 1f0k_A 245 I--DDMAAAYAWADVVVCRSG----ALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAG-----AAKIIEQPQLSVD 313 (364)
T ss_dssp C--SCHHHHHHHCSEEEECCC----HHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTT-----SEEECCGGGCCHH
T ss_pred h--hhHHHHHHhCCEEEECCc----hHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhCC-----cEEEeccccCCHH
Confidence 9 899999999999999983 899999999999999999987531 455554 599886 5 89
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhh
Q psy15555 434 EYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLFK 482 (488)
Q Consensus 434 ~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~ 482 (488)
+++++|.++ |++.++++++++++.+++|+|+.+++++.++|++.-.
T Consensus 314 ~la~~i~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 359 (364)
T 1f0k_A 314 AVANTLAGW---SRETLLTMAERARAASIPDATERVANEVSRVARALEH 359 (364)
T ss_dssp HHHHHHHTC---CHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHhc---CHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHh
Confidence 999999988 7889999999999888999999999999999987644
No 18
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.97 E-value=3.8e-29 Score=256.33 Aligned_cols=332 Identities=11% Similarity=0.096 Sum_probs=235.3
Q ss_pred ccccEEEEeccCCCCCCCceehHHHHHHH--HHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeecc
Q psy15555 50 NVLKTVAFFHPYCNAGGGGERVLWTAVLA--LHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRR 127 (488)
Q Consensus 50 ~~~~rI~~~~~~~~~~gG~e~~~~~l~~~--L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 127 (488)
.++|||+++.+.+.. ||.++++.++++. +.+. +++|++++..+... ......... . ..+..+ .
T Consensus 203 ~~~~rI~~~~~~~~~-~g~~~~~~~l~~~L~~~~~--~~~v~~~~~~~~~~-~~~~~~~~~--------~-~~~~~~--~ 267 (568)
T 2vsy_A 203 KGPLRVGFVSNGFGA-HPTGLLTVALFEALQRRQP--DLQMHLFATSGDDG-STLRTRLAQ--------A-STLHDV--T 267 (568)
T ss_dssp SSCEEEEEEESCSSS-SHHHHHHHHHHHHHHHHCT--TEEEEEEESSCCCS-CHHHHHHHH--------T-SEEEEC--T
T ss_pred CCCeEEEEECccccc-ChHHHHHHHHHhhccCCcc--cEEEEEEECCCCCc-cHHHHHHHh--------c-CeEEEC--C
Confidence 567999999887764 4588999999999 6665 78888887653211 111111111 1 111111 0
Q ss_pred ceeeccCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCcc--chhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhh
Q psy15555 128 KFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYA--FTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRV 205 (488)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~--~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~ 205 (488)
.+ . ...+.+.+++.+|||||...++. ..+..+. .+..|++...|....
T Consensus 268 ~~------~-----------~~~l~~~i~~~~~Div~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------ 317 (568)
T 2vsy_A 268 AL------G-----------HLATAKHIRHHGIDLLFDLRGWGGGGRPEVFA-LRPAPVQVNWLAYPG------------ 317 (568)
T ss_dssp TC------C-----------HHHHHHHHHHTTCSEEEECSSCTTCSSCHHHH-TCCSSEEEEESSSSS------------
T ss_pred CC------C-----------HHHHHHHHHhCCCCEEEECCCCCCcchHHHHh-cCCCceeEeeecCCc------------
Confidence 00 0 02355678889999998665433 2223332 345666665542110
Q ss_pred hcccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhcc--CC
Q psy15555 206 ITHNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKI--TH 283 (488)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~--~~ 283 (488)
... ... .....+|.++++|+..++ +. +++.++||.+++....+. ..
T Consensus 318 ----------~~~-~~~--------------~~~~~~d~~i~~s~~~~~-----~~--~~i~~ipn~~~~~~~~~~~~~~ 365 (568)
T 2vsy_A 318 ----------TSG-APW--------------MDYVLGDAFALPPALEPF-----YS--EHVLRLQGAFQPSDTSRVVAEP 365 (568)
T ss_dssp ----------CCC-CTT--------------CCEEEECTTTSCTTTGGG-----CS--SEEEECSSCSCCCCTTCCCCCC
T ss_pred ----------ccC-CCC--------------ceEEEECCCcCCcccccC-----Cc--ceeEcCCCcCCCCCCCCCCCCC
Confidence 000 000 011236778888876543 32 578999986544321110 00
Q ss_pred C-----CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEe-cCCCCCcHHHHHHHHHHHHhcCCC-
Q psy15555 284 S-----KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIG-STRNEEDEVCVKDMQDLCKHLSLE- 356 (488)
Q Consensus 284 ~-----~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG-~~~~~~~~~~~~~l~~~~~~~~l~- 356 (488)
. ..++..+++++|++.+ ||++.+++|+.++.++. |+++|+|+| .++ ..+++++.++++|+.
T Consensus 366 ~~r~~~~~~~~~~v~~~g~~~~-K~~~~li~a~~~l~~~~-----~~~~l~i~G~~g~------~~~~l~~~~~~~~l~~ 433 (568)
T 2vsy_A 366 PSRTQCGLPEQGVVLCCFNNSY-KLNPQSMARMLAVLREV-----PDSVLWLLSGPGE------ADARLRAFAHAQGVDA 433 (568)
T ss_dssp CCTGGGTCCTTSCEEEECCCGG-GCCHHHHHHHHHHHHHC-----TTCEEEEECCSTT------HHHHHHHHHHHTTCCG
T ss_pred CCccccCCCCCCEEEEeCCccc-cCCHHHHHHHHHHHHhC-----CCcEEEEecCCHH------HHHHHHHHHHHcCCCh
Confidence 0 0123345669999999 99999999999998887 899999999 664 348899999999998
Q ss_pred CcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEE-------eCCC-------CCccceeccCCCc
Q psy15555 357 NNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIA-------HKSG-------GPKMDIVIEDPET 422 (488)
Q Consensus 357 ~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~-------~~~~-------~~~~eiv~~~~~~ 422 (488)
++|+|.|+++.+++..+|+.||++|.||.. ++|++++|||++|+|||+ ++.+ |.. |++
T Consensus 434 ~~v~~~g~~~~~~~~~~~~~adv~v~ps~~-~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~-e~v------ 505 (568)
T 2vsy_A 434 QRLVFMPKLPHPQYLARYRHADLFLDTHPY-NAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLD-EMN------ 505 (568)
T ss_dssp GGEEEECCCCHHHHHHHGGGCSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCG-GGB------
T ss_pred hHEEeeCCCCHHHHHHHHhcCCEEeeCCCC-CCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCCh-hhh------
Confidence 899999999999999999999999999998 999999999999999999 7776 554 443
Q ss_pred cccceecCCHHHHHHHHHHHHccCHHHHHHHHHHHHHHH---hhcCHHHHHHHHHHHHHHhhhhhc
Q psy15555 423 CRNGFLACDEVEYAQTIKLILHLSQDTKTRISQNAVSSV---DRFSMEEFKNGFLTFTQPLFKVMK 485 (488)
Q Consensus 423 ~~~g~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~---~~~s~~~~~~~~~~~~~~~~~~~~ 485 (488)
.+|++++++++.++++ |++.+++|++++++.+ +.|||+.+++++.++|++++....
T Consensus 506 ------~~~~~~la~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~~~~~~ 564 (568)
T 2vsy_A 506 ------VADDAAFVAKAVALAS-DPAALTALHARVDVLRRASGVFHMDGFADDFGALLQALARRHG 564 (568)
T ss_dssp ------CSSHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHTTT
T ss_pred ------cCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2389999999999999 9999999999999987 789999999999999999987543
No 19
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.97 E-value=4.6e-29 Score=240.71 Aligned_cols=306 Identities=13% Similarity=0.075 Sum_probs=211.5
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeE--EEEeecccee
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVIN--FVYLYRRKFV 130 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~ 130 (488)
.+| |+|.... |+++.+.+++++|.+++ ++++++.+++. ....... + .. +. +. ++.+..
T Consensus 41 ~~i-wih~~s~---G~~~~~~~L~~~L~~~~---~v~v~~~~~~~--~~~~~~~---~-----~~-v~~~~~-~p~~~~- 100 (374)
T 2xci_A 41 GAL-WVHTASI---GEFNTFLPILKELKREH---RILLTYFSPRA--REYLKTK---S-----DF-YDCLHP-LPLDNP- 100 (374)
T ss_dssp TCE-EEECSSH---HHHHHHHHHHHHHHHHS---CEEEEESCGGG--HHHHHTT---G-----GG-CSEEEE-CCCSSH-
T ss_pred CCE-EEEcCCH---HHHHHHHHHHHHHHhcC---CEEEEEcCCcH--HHHHHHh---c-----cc-ccceeE-CCCCCH-
Confidence 455 4554433 67899999999999985 66666655322 2112111 1 11 22 22 333211
Q ss_pred eccCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEe--cCCccchhhhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcc
Q psy15555 131 EASLYPYFTLLGQSIGSMILGVEALLSFQPDIYID--TMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITH 208 (488)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~--~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~ 208 (488)
..+.+++++++||+++. ++.|++.+..+ .+ |++...+.
T Consensus 101 ------------------~~l~~~l~~~~pDiv~~~~~~~~~~~~~~~---~~-p~~~~~~~------------------ 140 (374)
T 2xci_A 101 ------------------FSVKRFEELSKPKALIVVEREFWPSLIIFT---KV-PKILVNAY------------------ 140 (374)
T ss_dssp ------------------HHHHHHHHHHCCSEEEEESCCCCHHHHHHC---CS-CEEEEEEC------------------
T ss_pred ------------------HHHHHHHHHhCCCEEEEECccCcHHHHHHH---hC-CEEEEEee------------------
Confidence 33667888999998874 45566654332 22 66543221
Q ss_pred cCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCC-CCchhhhccCCCCCC
Q psy15555 209 NNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPP-CDTEDLKKITHSKTD 287 (488)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~-~d~~~~~~~~~~~~~ 287 (488)
.+... +.+.+++.+|.++++|+.+++.+.+. +.+ ++.+++|+ ++.... + ... -
T Consensus 141 -----------~~~~~---------~~~~~~~~~d~ii~~S~~~~~~l~~~-g~~-ki~vi~n~~f~~~~~-~-~~~--l 194 (374)
T 2xci_A 141 -----------AKGSL---------IEKILSKKFDLIIMRTQEDVEKFKTF-GAK-RVFSCGNLKFICQKG-K-GIK--L 194 (374)
T ss_dssp -----------CCCCH---------HHHHHHTTCSEEEESCHHHHHHHHTT-TCC-SEEECCCGGGCCCCC-S-CCC--C
T ss_pred -----------cCchH---------HHHHHHHhCCEEEECCHHHHHHHHHc-CCC-eEEEcCCCccCCCcC-h-hhh--h
Confidence 01100 33456788999999999999999985 555 89999987 222111 1 111 1
Q ss_pred CCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCC--------CcE
Q psy15555 288 GPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLE--------NNV 359 (488)
Q Consensus 288 ~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~--------~~v 359 (488)
+.++++++|+ ..||++.+++|++.+.++. |+++|+|+|+|| ++.++++++++++|+. ++|
T Consensus 195 ~~~vi~~~~~--~~k~~~~ll~A~~~l~~~~-----p~~~lvivG~g~-----~~~~~l~~~~~~~gl~~~~~~~~~~~v 262 (374)
T 2xci_A 195 KGEFIVAGSI--HTGEVEIILKAFKEIKKTY-----SSLKLILVPRHI-----ENAKIFEKKARDFGFKTSFFENLEGDV 262 (374)
T ss_dssp SSCEEEEEEE--CGGGHHHHHHHHHHHHTTC-----TTCEEEEEESSG-----GGHHHHHHHHHHTTCCEEETTCCCSSE
T ss_pred cCCEEEEEeC--CCchHHHHHHHHHHHHhhC-----CCcEEEEECCCH-----HHHHHHHHHHHHCCCceEEecCCCCcE
Confidence 2356777775 4689999999999998877 899999999987 5556899999998876 468
Q ss_pred EEecCCChHHHHHHHHhCcEEEEcC-CCCcCCccHHHHHHcCCcEEEeCC-CCCccceeccCCCccccceecCCHHHHHH
Q psy15555 360 EFKVNLPYEDMKKEFSEGLIGLHAM-WNEHFGIGIVECMAAGLIMIAHKS-GGPKMDIVIEDPETCRNGFLACDEVEYAQ 437 (488)
Q Consensus 360 ~~~g~~~~~el~~~~~~ad~~v~~s-~~e~~g~~~lEa~a~G~PvI~~~~-~~~~~eiv~~~~~~~~~g~~~~~~~~l~~ 437 (488)
.+.|.. +|+..+|+.||+++.+| ..|.+|++++||||+|+|||+++. ++.. |++++. .+.+.++.+.|+++|++
T Consensus 263 ~~~~~~--~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~-e~~~~~-~~~G~l~~~~d~~~La~ 338 (374)
T 2xci_A 263 ILVDRF--GILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVN-DLKEFL-EKEGAGFEVKNETELVT 338 (374)
T ss_dssp EECCSS--SCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSH-HHHHHH-HHTTCEEECCSHHHHHH
T ss_pred EEECCH--HHHHHHHHhCCEEEECCcccCCCCcCHHHHHHhCCCEEECCCccChH-HHHHHH-HHCCCEEEeCCHHHHHH
Confidence 888877 89999999999876665 557889999999999999998744 5554 766542 00123444569999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHHh
Q psy15555 438 TIKLILHLSQDTKTRISQNAVSSVD 462 (488)
Q Consensus 438 ~i~~ll~~~~~~~~~~~~~a~~~~~ 462 (488)
+|.++++ | +.+++|+++|++.++
T Consensus 339 ai~~ll~-d-~~r~~mg~~ar~~~~ 361 (374)
T 2xci_A 339 KLTELLS-V-KKEIKVEEKSREIKG 361 (374)
T ss_dssp HHHHHHH-S-CCCCCHHHHHHHHHH
T ss_pred HHHHHHh-H-HHHHHHHHHHHHHHH
Confidence 9999999 9 999999999998883
No 20
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.97 E-value=1.7e-29 Score=245.22 Aligned_cols=277 Identities=11% Similarity=0.044 Sum_probs=198.6
Q ss_pred HHHHHHhhhcCCcEEEecCC-ccchhh-hhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHH
Q psy15555 149 ILGVEALLSFQPDIYIDTMG-YAFTYP-LFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLF 226 (488)
Q Consensus 149 ~~~~~~l~~~~pDiii~~~~-~~~~~~-~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (488)
..+.+++++.+||+||.+.. ++.... .+....++|++...|... . .+. ......
T Consensus 85 ~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~ip~v~~~~~~~-~---------------------~~~-~~~~~~- 140 (375)
T 3beo_A 85 EGLDKVMKEAKPDIVLVHGDTTTTFIASLAAFYNQIPVGHVEAGLR-T---------------------WDK-YSPYPE- 140 (375)
T ss_dssp HHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHHTTCCEEEESCCCC-C---------------------SCT-TSSTTH-
T ss_pred HHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEecccc-c---------------------ccc-cCCChh-
Confidence 44667888999999987543 333322 333366889876444210 0 000 000000
Q ss_pred HHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCC-CCchhhhccC-C------CCCCCCeEEEEeecc
Q psy15555 227 YYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPP-CDTEDLKKIT-H------SKTDGPVKIISVAQF 298 (488)
Q Consensus 227 ~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~-~d~~~~~~~~-~------~~~~~~~~i~~~g~~ 298 (488)
.. ..+.+.+.+|.++++|+..++.+.+.+..++++.+++|+ +|...+.+.. . ...+++.+++++|++
T Consensus 141 --~~---~~~~~~~~~d~ii~~s~~~~~~~~~~g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~~~~~~vl~~~gr~ 215 (375)
T 3beo_A 141 --EM---NRQLTGVMADLHFSPTAKSATNLQKENKDESRIFITGNTAIDALKTTVKETYSHPVLEKLGNNRLVLMTAHRR 215 (375)
T ss_dssp --HH---HHHHHHHHCSEEEESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHCCSSCCCHHHHTTTTSEEEEEECCCG
T ss_pred --Hh---hhhHHhhhhheeeCCCHHHHHHHHHcCCCcccEEEECChhHhhhhhhhhhhhhHHHHHhccCCCeEEEEeccc
Confidence 11 111123458999999999999998854334589999999 7766554321 0 112345577899998
Q ss_pred CCC-CChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhC
Q psy15555 299 RPE-KDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEG 377 (488)
Q Consensus 299 ~~~-k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~a 377 (488)
.+. ||++.+++|++.+.++. |+++++ +|.|+.. +..+.+++++ +..++|+|.|.++..++..+|+.|
T Consensus 216 ~~~~K~~~~li~a~~~l~~~~-----~~~~~i-~~~g~~~---~~~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~a 283 (375)
T 3beo_A 216 ENLGEPMRNMFRAIKRLVDKH-----EDVQVV-YPVHMNP---VVRETANDIL---GDYGRIHLIEPLDVIDFHNVAARS 283 (375)
T ss_dssp GGTTHHHHHHHHHHHHHHHHC-----TTEEEE-EECCSCH---HHHHHHHHHH---TTCTTEEEECCCCHHHHHHHHHTC
T ss_pred ccchhHHHHHHHHHHHHHhhC-----CCeEEE-EeCCCCH---HHHHHHHHHh---hccCCEEEeCCCCHHHHHHHHHhC
Confidence 875 99999999999998876 788855 4766521 2334444443 223689999999989999999999
Q ss_pred cEEEEcCCCCcCCccHHHHHHcCCcEEEeCC-CCCccceeccCCCccccceecC-CHHHHHHHHHHHHccCHHHHHHHHH
Q psy15555 378 LIGLHAMWNEHFGIGIVECMAAGLIMIAHKS-GGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKLILHLSQDTKTRISQ 455 (488)
Q Consensus 378 d~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~-~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~~~~~~~~~~~~ 455 (488)
|++|.+| |..++|||++|+|||+++. ++.. |+++++ +|++++ |+++++++|.++++ |++.+++|++
T Consensus 284 d~~v~~s-----g~~~lEA~a~G~Pvi~~~~~~~~~-e~v~~g-----~g~~v~~d~~~la~~i~~ll~-~~~~~~~~~~ 351 (375)
T 3beo_A 284 YLMLTDS-----GGVQEEAPSLGVPVLVLRDTTERP-EGIEAG-----TLKLAGTDEETIFSLADELLS-DKEAHDKMSK 351 (375)
T ss_dssp SEEEECC-----HHHHHHHHHHTCCEEECSSCCSCH-HHHHTT-----SEEECCSCHHHHHHHHHHHHH-CHHHHHHHCC
T ss_pred cEEEECC-----CChHHHHHhcCCCEEEecCCCCCc-eeecCC-----ceEEcCCCHHHHHHHHHHHHh-ChHhHhhhhh
Confidence 9999998 4559999999999999965 7765 887654 799885 99999999999999 9999999999
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHH
Q psy15555 456 NAVSSVDRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 456 ~a~~~~~~~s~~~~~~~~~~~~~ 478 (488)
++++..+.|+|+.+++.+.++++
T Consensus 352 ~~~~~~~~~~~~~i~~~~~~~~~ 374 (375)
T 3beo_A 352 ASNPYGDGRASERIVEAILKHFN 374 (375)
T ss_dssp CCCTTCCSCHHHHHHHHHHHHTT
T ss_pred cCCCCCCCcHHHHHHHHHHHHhh
Confidence 98877788999999998887653
No 21
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.96 E-value=7.4e-29 Score=241.51 Aligned_cols=355 Identities=10% Similarity=0.015 Sum_probs=231.3
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCC-CeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceee
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYP-DYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVE 131 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 131 (488)
|||+++..... +...+.+++++|.++++ ++.++++ +..........+. +++... ..++...
T Consensus 1 mkIl~v~~~~~----~~~~~~~l~~~L~~~g~~~~~v~~~-~~~~~~~~~~~~~----~~~~~~------~~~~~~~--- 62 (384)
T 1vgv_A 1 MKVLTVFGTRP----EAIKMAPLVHALAKDPFFEAKVCVT-AQHREMLDQVLKL----FSIVPD------YDLNIMQ--- 62 (384)
T ss_dssp CEEEEEECSHH----HHHHHHHHHHHHHHSTTCEEEEEEC-CSSGGGGHHHHHH----HTCCCS------EECCCCS---
T ss_pred CeEEEEecccH----HHHHHHHHHHHHHhCCCCceEEEEc-CCCHHHHHHHHHH----cCCCCC------cceecCC---
Confidence 78988754321 22456789999999875 6666554 3322222222222 111000 1111111
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCC-ccchh-hhhhhhCCCeeEEEEeCCccchHHHHHHHhhhhccc
Q psy15555 132 ASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMG-YAFTY-PLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHN 209 (488)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~-~~~~~-~~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~ 209 (488)
.. ..... ........+.+++++.+||+||.+.. ..... .++....++|++.+.|.... .
T Consensus 63 ~~-~~~~~---~~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~~-~-------------- 123 (384)
T 1vgv_A 63 PG-QGLTE---ITCRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRT-G-------------- 123 (384)
T ss_dssp TT-SCHHH---HHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHTTTCCEEEESCCCCC-S--------------
T ss_pred CC-ccHHH---HHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEeccccc-c--------------
Confidence 00 01111 01222355677888999999987653 22221 12333668898876653210 0
Q ss_pred CccccccCccchhhhHHHHHHHHHHHHH-HhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCC-Cchhhhcc------
Q psy15555 210 NSQRVANNPILTSFKLFYYKVFALLYSH-VGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPC-DTEDLKKI------ 281 (488)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~-d~~~~~~~------ 281 (488)
. ........ ..+. +.+.+|.++++|+..++.+.+.+..+.++.+++|++ |...+.+.
T Consensus 124 -------~-~~~~~~~~-------~~~~~~~~~~d~ii~~s~~~~~~l~~~g~~~~~i~vi~n~~~d~~~~~~~~~~~~~ 188 (384)
T 1vgv_A 124 -------D-LYSPWPEE-------ANRTLTGHLAMYHFSPTETSRQNLLRENVADSRIFITGNTVIDALLWVRDQVMSSD 188 (384)
T ss_dssp -------C-TTSSTTHH-------HHHHHHHTTCSEEEESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHHHHTTTCH
T ss_pred -------c-ccCCCchH-------hhHHHHHhhccEEEcCcHHHHHHHHHcCCChhhEEEeCChHHHHHHhhhhccccch
Confidence 0 00000000 1111 245699999999999999987543345799999984 43222111
Q ss_pred ------CCC---C-CCCCeEEEEeeccCCC-CChHHHHHHHHHhHHhhhhhccCceEEEEE-ecCCCCCcHHHHHHHHHH
Q psy15555 282 ------THS---K-TDGPVKIISVAQFRPE-KDHPLQLRAMYQLRQIISEELWDNLKLIFI-GSTRNEEDEVCVKDMQDL 349 (488)
Q Consensus 282 ------~~~---~-~~~~~~i~~~g~~~~~-k~~~~ll~a~~~l~~~~~~~~~~~~~l~iv-G~~~~~~~~~~~~~l~~~ 349 (488)
... . .+++.+++++|++.+. ||++.+++|+..+.++. |+++++++ |.++ +..+++++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~~-----~~~~l~i~~g~~~-----~~~~~l~~~ 258 (384)
T 1vgv_A 189 KLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHALADIATTH-----QDIQIVYPVHLNP-----NVREPVNRI 258 (384)
T ss_dssp HHHHHHHTTCTTCCTTSEEEEEECCCBSSCCHHHHHHHHHHHHHHHHC-----TTEEEEEECCBCH-----HHHHHHHHH
T ss_pred hhhHHHHHhccccCCCCCEEEEEeCCccccchHHHHHHHHHHHHHhhC-----CCeEEEEEcCCCH-----HHHHHHHHH
Confidence 111 1 2234578899999876 89999999999998877 78998885 3332 334556555
Q ss_pred HHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCC-CCCccceeccCCCcccccee
Q psy15555 350 CKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKS-GGPKMDIVIEDPETCRNGFL 428 (488)
Q Consensus 350 ~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~-~~~~~eiv~~~~~~~~~g~~ 428 (488)
+.. .++|.+.|.++.+++..+|+.||++|++| |..++|||++|+|||+++. ++.. ++++++ +|++
T Consensus 259 ~~~---~~~v~~~g~~~~~~~~~~~~~ad~~v~~S-----g~~~lEA~a~G~PvI~~~~~~~~~-e~v~~g-----~g~l 324 (384)
T 1vgv_A 259 LGH---VKNVILIDPQEYLPFVWLMNHAWLILTDS-----GGIQEEAPSLGKPVLVMRDTTERP-EAVTAG-----TVRL 324 (384)
T ss_dssp HTT---CTTEEEECCCCHHHHHHHHHHCSEEEESS-----STGGGTGGGGTCCEEEESSCCSCH-HHHHHT-----SEEE
T ss_pred hhc---CCCEEEeCCCCHHHHHHHHHhCcEEEECC-----cchHHHHHHcCCCEEEccCCCCcc-hhhhCC-----ceEE
Confidence 432 36899999998899999999999999998 3348999999999999987 6665 787654 7888
Q ss_pred cC-CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhh
Q psy15555 429 AC-DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLFKVM 484 (488)
Q Consensus 429 ~~-~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~~~ 484 (488)
++ |+++++++|.++++ |++.+++|++++++..+.|+|+++++.+.++++++.+..
T Consensus 325 v~~d~~~la~~i~~ll~-d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 380 (384)
T 1vgv_A 325 VGTDKQRIVEEVTRLLK-DENEYQAMSRAHNPYGDGQACSRILEALKNNRISLGSHH 380 (384)
T ss_dssp ECSSHHHHHHHHHHHHH-CHHHHHHHHSSCCTTCCSCHHHHHHHHHHHTCCCC----
T ss_pred eCCCHHHHHHHHHHHHh-ChHHHhhhhhccCCCcCCCHHHHHHHHHHHHHHhhcccc
Confidence 86 99999999999999 999999999998877788999999999998888776544
No 22
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.96 E-value=1.1e-26 Score=229.42 Aligned_cols=285 Identities=12% Similarity=0.152 Sum_probs=204.1
Q ss_pred CCcEEEecCCccchhhhh-hh-hCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHHHHHHHHH
Q psy15555 159 QPDIYIDTMGYAFTYPLF-SY-IGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFALLYS 236 (488)
Q Consensus 159 ~pDiii~~~~~~~~~~~~-~~-~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (488)
.+|+|+.+......++.. +. ..+.|+++++|.|+...+... ..... .. +.+
T Consensus 123 ~~DiV~vHdyhl~~l~~~lr~~~~~~~i~~~~H~pfp~~~~~~-------------------~lp~~----~~----il~ 175 (482)
T 1uqt_A 123 DDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFN-------------------ALPTY----DT----LLE 175 (482)
T ss_dssp TTCEEEEESGGGTTHHHHHHHTTCCSCEEEECCSCCCCHHHHT-------------------TSTTH----HH----HHH
T ss_pred CCCEEEEECchHHHHHHHHHHhCCCCcEEEEEcCCCCCHHHHh-------------------hCccH----HH----HHH
Confidence 458998776544444433 32 337899999998864322110 00000 00 111
Q ss_pred HHhcccCEEEEcChhHHHHHHHH-----------------hccCCceEEEcCCCCchhhhccCCC-----------CCCC
Q psy15555 237 HVGKYSDIIMVNSSWTEEHVIQL-----------------WNCQLKTYKLYPPCDTEDLKKITHS-----------KTDG 288 (488)
Q Consensus 237 ~~~~~~d~ii~~s~~~~~~~~~~-----------------~~~~~k~~vi~~~~d~~~~~~~~~~-----------~~~~ 288 (488)
.+-.+|.+..++....+.+... ++...++.++|||+|.+.|.+.... ..++
T Consensus 176 -~ll~~d~i~f~~~~~~~~f~~~~~~~l~~~~~~~~~~~~~g~~~~v~vip~GID~~~f~~~~~~~~~~~~~~lr~~~~~ 254 (482)
T 1uqt_A 176 -QLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAELKN 254 (482)
T ss_dssp -HHTTSSEEEESSHHHHHHHHHHHHHHSCEEEETTTEEEETTEEEEEEECCCCCCHHHHHHHHHSCCCHHHHHHHHHTTT
T ss_pred -hhhccCeEEEECHHHHHHHHHHHHHHhCCccccCCeEEECCeEEEEEEEeccCCHHHHHHHhcCcchHHHHHHHHHhCC
Confidence 1235688888887776666531 1223478999999998877543110 0136
Q ss_pred CeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcH---HHHHHHHHHHHhcC----CC--CcE
Q psy15555 289 PVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDE---VCVKDMQDLCKHLS----LE--NNV 359 (488)
Q Consensus 289 ~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~---~~~~~l~~~~~~~~----l~--~~v 359 (488)
+++++++||+.+.||++.+++|++++.+++++ ...+++|+++|.....+.+ +..+++++++.+.+ .. ..|
T Consensus 255 ~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~-~~~~v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v 333 (482)
T 1uqt_A 255 VQNIFSVERLDYSKGLPERFLAYEALLEKYPQ-HHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPL 333 (482)
T ss_dssp CEEEEEECCBCGGGCHHHHHHHHHHHHHHCGG-GTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSE
T ss_pred CEEEEEEeCCcccCCHHHHHHHHHHHHHhCcc-ccCcEEEEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceE
Confidence 78999999999999999999999999887621 0014789999964322222 23455566554432 11 135
Q ss_pred E-EecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCC-----cEEEeCCCCCccceeccCCCccccceecC--C
Q psy15555 360 E-FKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGL-----IMIAHKSGGPKMDIVIEDPETCRNGFLAC--D 431 (488)
Q Consensus 360 ~-~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~-----PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~ 431 (488)
+ +.|.++.+|+..+|+.||+|+.||..|+||++++||||||+ |+|+++.+|.. +.+. +|++++ |
T Consensus 334 ~~~~g~v~~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~-~~l~-------~g~lv~p~d 405 (482)
T 1uqt_A 334 YYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAA-NELT-------SALIVNPYD 405 (482)
T ss_dssp EEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGG-GTCT-------TSEEECTTC
T ss_pred EEeCCCCCHHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCCH-HHhC-------CeEEECCCC
Confidence 5 56889999999999999999999999999999999999997 99999988776 4442 378876 9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Q psy15555 432 EVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPL 480 (488)
Q Consensus 432 ~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~ 480 (488)
+++++++|.+++++++++++++++++++.+.+||++.+++++++.++++
T Consensus 406 ~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 406 RDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQI 454 (482)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 9999999999998567889999999999998899999999999999876
No 23
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.95 E-value=8e-27 Score=198.85 Aligned_cols=163 Identities=18% Similarity=0.306 Sum_probs=138.6
Q ss_pred CeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChH
Q psy15555 289 PVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYE 368 (488)
Q Consensus 289 ~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 368 (488)
+++++|+|++.+.||++.+++|+..+++ . ++++|+++|.++.. ++++++++++++ ++.+ |+++.+
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~-~-----~~~~l~i~G~g~~~------~~~~~~~~~~~~--~v~~-g~~~~~ 66 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSKY-K-----QDIVLLLKGKGPDE------KKIKLLAQKLGV--KAEF-GFVNSN 66 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCTT-G-----GGEEEEEECCSTTH------HHHHHHHHHHTC--EEEC-CCCCHH
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhcc-C-----CCeEEEEEeCCccH------HHHHHHHHHcCC--eEEE-eecCHH
Confidence 5789999999999999999999999853 3 79999999998643 788889998886 7888 999999
Q ss_pred HHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCC-cEEEeC-CCCCccceeccCCCccccceecCCHHHHHHHHHHHHccC
Q psy15555 369 DMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGL-IMIAHK-SGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILHLS 446 (488)
Q Consensus 369 el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~-PvI~~~-~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~~~ 446 (488)
++..+|+.||++++||..|++|++++|||++|+ |||+++ .++.. +++.++ .+.+...|+++++++|.++++ +
T Consensus 67 ~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~-~~~~~~----~~~~~~~~~~~l~~~i~~l~~-~ 140 (166)
T 3qhp_A 67 ELLEILKTCTLYVHAANVESEAIACLEAISVGIVPVIANSPLSATR-QFALDE----RSLFEPNNAKDLSAKIDWWLE-N 140 (166)
T ss_dssp HHHHHHTTCSEEEECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGG-GGCSSG----GGEECTTCHHHHHHHHHHHHH-C
T ss_pred HHHHHHHhCCEEEECCcccCccHHHHHHHhcCCCcEEeeCCCCchh-hhccCC----ceEEcCCCHHHHHHHHHHHHh-C
Confidence 999999999999999999999999999999998 999954 56664 888776 443334499999999999999 9
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHH
Q psy15555 447 QDTKTRISQNAVSSVDRFSMEEFKNG 472 (488)
Q Consensus 447 ~~~~~~~~~~a~~~~~~~s~~~~~~~ 472 (488)
++.++++++++++.+++|||+.++++
T Consensus 141 ~~~~~~~~~~~~~~~~~~s~~~~~~~ 166 (166)
T 3qhp_A 141 KLERERMQNEYAKSALNYTLENSVIQ 166 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHCChhhhhcC
Confidence 99999999999998899999998764
No 24
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.94 E-value=1.1e-25 Score=222.58 Aligned_cols=316 Identities=10% Similarity=0.027 Sum_probs=207.5
Q ss_pred cCCcEEEecCCccchhhhh-h-hhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccc-cCccchhhhH--HHHHHHH
Q psy15555 158 FQPDIYIDTMGYAFTYPLF-S-YIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVA-NNPILTSFKL--FYYKVFA 232 (488)
Q Consensus 158 ~~pDiii~~~~~~~~~~~~-~-~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~ 232 (488)
.+|||+|.+.......+.. + ...++++++++|.... -.++.. + ++..... ...+...... .......
T Consensus 180 ~~pdIiH~HDW~tg~~~~~Lk~~~~~i~tVfTiH~tel----GR~lag-q---g~~~~y~~L~~~~~d~ea~~~~i~~~~ 251 (725)
T 3nb0_A 180 QHAIVAHFHEWLAGVALPLCRKRRIDVVTIFTTHATLL----GRYLCA-S---GSFDFYNCLESVDVDHEAGRFGIYHRY 251 (725)
T ss_dssp SEEEEEEEESGGGCTHHHHHHHTTCSCEEEEEESSCHH----HHHHTS-S---SCSCHHHHGGGCCHHHHHHHTTCHHHH
T ss_pred CCCcEEEeCchhhhHHHHHHHHhCCCCCEEEEEecchh----hhhhhh-c---CCCchhhhhhhcCCChhhhhhchhHHH
Confidence 5689999887544444332 2 2447999999997531 010000 0 0000000 0000000000 0001223
Q ss_pred HHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCC------------------------CCC-C
Q psy15555 233 LLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITH------------------------SKT-D 287 (488)
Q Consensus 233 ~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~------------------------~~~-~ 287 (488)
.+++.....||.|+++|+.+++.+..+++.+.+.. |+||+|.+.+.+... ... +
T Consensus 252 ~~EKaga~~AD~ITTVS~~yA~Ei~~Ll~r~~d~i-IpNGID~~~f~p~~~~~~~k~~aK~klq~~l~~~~~~~l~l~~d 330 (725)
T 3nb0_A 252 CIERAAAHSADVFTTVSQITAFEAEHLLKRKPDGI-LPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFDFDLD 330 (725)
T ss_dssp HHHHHHHHHSSEEEESSHHHHHHHHHHTSSCCSEE-CCCCBCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTTCCCSCGG
T ss_pred HHHHHHHHhCCEEEECCHHHHHHHHHHhcCCCCEE-EcCCccccccCcchhhHHHHHHHHHHHHHHHHhhcccCCCCCCC
Confidence 45677888999999999999999999877665544 999999888765310 111 3
Q ss_pred CCeEEEEeeccC-CCCChHHHHHHHHHhHHhhhh--hccCceEEEEEecCCCCCcHH-----------------------
Q psy15555 288 GPVKIISVAQFR-PEKDHPLQLRAMYQLRQIISE--ELWDNLKLIFIGSTRNEEDEV----------------------- 341 (488)
Q Consensus 288 ~~~~i~~~g~~~-~~k~~~~ll~a~~~l~~~~~~--~~~~~~~l~ivG~~~~~~~~~----------------------- 341 (488)
+.+++..+||++ .+||++.+++|+.++...... ....-+.|+|++.+....+.+
T Consensus 331 k~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~ 410 (725)
T 3nb0_A 331 NTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIG 410 (725)
T ss_dssp GEEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcchhHHHHHHHHHHHHHHHHh
Confidence 345566689999 689999999999999865211 112347888888764331100
Q ss_pred ------------------------------------------------------------HHHHHHHHHHhcCCCCc---
Q psy15555 342 ------------------------------------------------------------CVKDMQDLCKHLSLENN--- 358 (488)
Q Consensus 342 ------------------------------------------------------------~~~~l~~~~~~~~l~~~--- 358 (488)
.-+.+...++.+++.+.
T Consensus 411 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~D~Il~~~r~l~L~N~~~d 490 (725)
T 3nb0_A 411 KRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSD 490 (725)
T ss_dssp HHHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGGCHHHHHHHHHTCCCCTTC
T ss_pred HHHHHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCccHHHHHHHhcCCCCCcCC
Confidence 00122223334444343
Q ss_pred ---EEEe-cCCChH------HHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCc----cc
Q psy15555 359 ---VEFK-VNLPYE------DMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPET----CR 424 (488)
Q Consensus 359 ---v~~~-g~~~~~------el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~----~~ 424 (488)
|+|+ ++++.. ++..+|+.||+||+||..|+||++++||||||+|||+++.+|.. +.+.++ .. ..
T Consensus 491 rVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG~~-d~V~dg-~~~~~~~~ 568 (725)
T 3nb0_A 491 RVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFG-SYMEDL-IETNQAKD 568 (725)
T ss_dssp SEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETTBHHH-HHHHTT-SCHHHHHH
T ss_pred ceeEEEeccccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCCCChh-hhhhcc-ccccCCCC
Confidence 5555 455554 58999999999999999999999999999999999999999987 777664 11 13
Q ss_pred cceecC-----CHHH----HHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhh
Q psy15555 425 NGFLAC-----DEVE----YAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLFKVM 484 (488)
Q Consensus 425 ~g~~~~-----~~~~----l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~~~ 484 (488)
+|+++. |+++ |+++|..++..+++.+.++++++++.+++|||+.+++++.++|+.++.+.
T Consensus 569 tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A~~FSWe~iA~~Yl~~Ye~aL~~~ 637 (725)
T 3nb0_A 569 YGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALSDLLDWKRMGLEYVKARQLALRRG 637 (725)
T ss_dssp TTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGGGGGBHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhc
Confidence 687662 4554 45555555544788899999999888899999999999999999988643
No 25
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.94 E-value=2.3e-24 Score=209.89 Aligned_cols=283 Identities=10% Similarity=0.047 Sum_probs=210.0
Q ss_pred CcEEEecCCccchhhhh-h-hhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHHHHHHHHHH
Q psy15555 160 PDIYIDTMGYAFTYPLF-S-YIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFALLYSH 237 (488)
Q Consensus 160 pDiii~~~~~~~~~~~~-~-~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (488)
-|+|..+......+|.. + ...+.++.+++|.|+...++...+.. .+...++ .
T Consensus 150 ~D~VwVhDYhL~llp~~lR~~~~~~~igfFlHiPfPs~e~f~~Lp~---------------------~~r~ell-----~ 203 (496)
T 3t5t_A 150 DPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADYWRILPK---------------------EIRTGIL-----H 203 (496)
T ss_dssp SCEEEEESGGGTTHHHHHHHHCTTSCEEEECCSCCCCHHHHTTSCH---------------------HHHHHHH-----H
T ss_pred CCEEEEeCccHhHHHHHHHhhCCCCeEEEEEcCCCCCHHHHhhCcH---------------------hHHHHHH-----H
Confidence 45776666555555533 2 23578999999999865544321110 0001111 2
Q ss_pred HhcccCEEEEcChhHHHHHHHH----h-c--------------cCCceEEEcCCCCchhhhccCCC-------CCCCCeE
Q psy15555 238 VGKYSDIIMVNSSWTEEHVIQL----W-N--------------CQLKTYKLYPPCDTEDLKKITHS-------KTDGPVK 291 (488)
Q Consensus 238 ~~~~~d~ii~~s~~~~~~~~~~----~-~--------------~~~k~~vi~~~~d~~~~~~~~~~-------~~~~~~~ 291 (488)
.+-.+|.|.+++...++.|.+. . + ...++.++|+|+|.+.|.+.... ..+++++
T Consensus 204 gll~~DligF~t~~y~~~Fl~~~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~~~~~lr~~~~~~~l 283 (496)
T 3t5t_A 204 GMLPATTIGFFADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQLPEGIEEWADGHRL 283 (496)
T ss_dssp HHTTSSEEEESSHHHHHHHHHHHHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CCCCTTHHHHHTTSEE
T ss_pred HHHhCCEEEEecHHHHHHHHHHHHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHHHHHHHHHHhCCceE
Confidence 3457899999999998887652 2 2 11267889999999988765321 0136789
Q ss_pred EEEeeccCCCCChHHHHHHHHHhHHhhhhhccCc---eEEEEEecCCCCCcH---HHHHHHHHHHHhc----CCCCcEEE
Q psy15555 292 IISVAQFRPEKDHPLQLRAMYQLRQIISEELWDN---LKLIFIGSTRNEEDE---VCVKDMQDLCKHL----SLENNVEF 361 (488)
Q Consensus 292 i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~---~~l~ivG~~~~~~~~---~~~~~l~~~~~~~----~l~~~v~~ 361 (488)
++++||+.+.||+..+++|+ ++.+++ |+ +.|+++|.....+.+ +..+++++++.+. |.. .|+|
T Consensus 284 Il~VgRLd~~KGi~~lL~Af-~ll~~~-----P~~~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~-~V~f 356 (496)
T 3t5t_A 284 VVHSGRTDPIKNAERAVRAF-VLAARG-----GGLEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSD-TVRI 356 (496)
T ss_dssp EEEEEESSGGGCHHHHHHHH-HHHHHT-----SSCTTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTT-SEEE
T ss_pred EEEcccCccccCHHHHHHHH-HHHHhC-----cccceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCc-CEEE
Confidence 99999999999999999999 888887 54 568888743222222 3334555555543 222 6999
Q ss_pred ecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcC---CcEEEeCCCCCccceeccCCCccccceecC--CHHHHH
Q psy15555 362 KVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAG---LIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYA 436 (488)
Q Consensus 362 ~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G---~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~ 436 (488)
+|.++.+|+..+|+.||+++.||..|+||++++|||||| .|+|.|..+|.. +.+. .+|++++ |+++++
T Consensus 357 ~g~v~~~el~aly~~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aGa~-~~l~------~~allVnP~D~~~lA 429 (496)
T 3t5t_A 357 DNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNERDADVILSETCGAA-EVLG------EYCRSVNPFDLVEQA 429 (496)
T ss_dssp EECCCHHHHHHHHHHCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBTTH-HHHG------GGSEEECTTBHHHHH
T ss_pred eCCCCHHHHHHHHHhccEEEECcccccCChhHHHHHHhCCCCCCEEEeCCCCCH-HHhC------CCEEEECCCCHHHHH
Confidence 999999999999999999999999999999999999997 899999998887 5553 3488886 999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhh
Q psy15555 437 QTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLFK 482 (488)
Q Consensus 437 ~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~ 482 (488)
++|.+++++++++++++.++.++.+.+++.+..++.+++.++....
T Consensus 430 ~AI~~aL~m~~~er~~r~~~~~~~V~~~d~~~W~~~fl~~L~~~~~ 475 (496)
T 3t5t_A 430 EAISAALAAGPRQRAEAAARRRDAARPWTLEAWVQAQLDGLAADHA 475 (496)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHhhccc
Confidence 9999999977899999999999999999999999999998887644
No 26
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.94 E-value=1.1e-24 Score=211.47 Aligned_cols=276 Identities=11% Similarity=0.050 Sum_probs=192.1
Q ss_pred HHHHHHhhhcCCcEEEecCCccchhh--hhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHH
Q psy15555 149 ILGVEALLSFQPDIYIDTMGYAFTYP--LFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLF 226 (488)
Q Consensus 149 ~~~~~~l~~~~pDiii~~~~~~~~~~--~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (488)
..+.+++++.+||+||.+......++ .+....++|++ +.|.....+ ........
T Consensus 81 ~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v-~~~~~~~~~----------------------~~~~~~~~- 136 (376)
T 1v4v_A 81 PQAARALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPVG-HVEAGLRSG----------------------NLKEPFPE- 136 (376)
T ss_dssp HHHHHHHHHTTCSEEEEESSCHHHHHHHHHHHHTTCCEE-EETCCCCCS----------------------CTTSSTTH-
T ss_pred HHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHhCCCEE-EEeCCCccc----------------------cccCCCch-
Confidence 44667888999999987654332222 33346688975 343322100 00000000
Q ss_pred HHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCC-Cchhhhcc----CCCCCCCCeEEEEeeccCCC
Q psy15555 227 YYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPC-DTEDLKKI----THSKTDGPVKIISVAQFRPE 301 (488)
Q Consensus 227 ~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~-d~~~~~~~----~~~~~~~~~~i~~~g~~~~~ 301 (488)
.. ..+.+.+.+|.++++|+..++.+.+.+..++++.+++|+. |...+... .....+++++++++||+...
T Consensus 137 --~~---~~~~~~~~~~~~~~~s~~~~~~l~~~g~~~~ki~vi~n~~~d~~~~~~~~~~~~~~~~~~~~vl~~~gr~~~~ 211 (376)
T 1v4v_A 137 --EA---NRRLTDVLTDLDFAPTPLAKANLLKEGKREEGILVTGQTGVDAVLLAAKLGRLPEGLPEGPYVTVTMHRRENW 211 (376)
T ss_dssp --HH---HHHHHHHHCSEEEESSHHHHHHHHTTTCCGGGEEECCCHHHHHHHHHHHHCCCCTTCCSSCEEEECCCCGGGG
T ss_pred --HH---HHHHHHHHhceeeCCCHHHHHHHHHcCCCcceEEEECCchHHHHhhhhhhhHHHHhcCCCCEEEEEeCcccch
Confidence 01 1122335589999999999999988644445888999974 43222111 11122345677889998777
Q ss_pred CChHHHHHHHHHhHHhhhhhccCceEEEEE-ecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEE
Q psy15555 302 KDHPLQLRAMYQLRQIISEELWDNLKLIFI-GSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIG 380 (488)
Q Consensus 302 k~~~~ll~a~~~l~~~~~~~~~~~~~l~iv-G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~ 380 (488)
|+++.+++|++.+.++. |+++++++ |.++ +..+++++++.. .++|.+.|.++..++..+|+.||++
T Consensus 212 k~~~~ll~a~~~l~~~~-----~~~~lv~~~g~~~-----~~~~~l~~~~~~---~~~v~~~g~~g~~~~~~~~~~ad~~ 278 (376)
T 1v4v_A 212 PLLSDLAQALKRVAEAF-----PHLTFVYPVHLNP-----VVREAVFPVLKG---VRNFVLLDPLEYGSMAALMRASLLL 278 (376)
T ss_dssp GGHHHHHHHHHHHHHHC-----TTSEEEEECCSCH-----HHHHHHHHHHTT---CTTEEEECCCCHHHHHHHHHTEEEE
T ss_pred HHHHHHHHHHHHHHhhC-----CCeEEEEECCCCH-----HHHHHHHHHhcc---CCCEEEECCCCHHHHHHHHHhCcEE
Confidence 89999999999998876 78888876 6442 233566665532 3589999998888999999999999
Q ss_pred EEcCCCCcCCccHHHHHHcCCcEEEeCC-CCCccceeccCCCccccceec-CCHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy15555 381 LHAMWNEHFGIGIVECMAAGLIMIAHKS-GGPKMDIVIEDPETCRNGFLA-CDEVEYAQTIKLILHLSQDTKTRISQNAV 458 (488)
Q Consensus 381 v~~s~~e~~g~~~lEa~a~G~PvI~~~~-~~~~~eiv~~~~~~~~~g~~~-~~~~~l~~~i~~ll~~~~~~~~~~~~~a~ 458 (488)
|++| +|+ ++|||++|+|||+++. ++.. +++++ ++|+++ .|+++++++|.++++ |++.+++|++++
T Consensus 279 v~~S----~g~-~lEA~a~G~PvI~~~~~~~~~-~~~~~-----g~g~lv~~d~~~la~~i~~ll~-d~~~~~~~~~~~- 345 (376)
T 1v4v_A 279 VTDS----GGL-QEEGAALGVPVVVLRNVTERP-EGLKA-----GILKLAGTDPEGVYRVVKGLLE-NPEELSRMRKAK- 345 (376)
T ss_dssp EESC----HHH-HHHHHHTTCCEEECSSSCSCH-HHHHH-----TSEEECCSCHHHHHHHHHHHHT-CHHHHHHHHHSC-
T ss_pred EECC----cCH-HHHHHHcCCCEEeccCCCcch-hhhcC-----CceEECCCCHHHHHHHHHHHHh-ChHhhhhhcccC-
Confidence 9998 355 8899999999999854 6654 77654 478888 599999999999999 999999998744
Q ss_pred HHHhhcCHHHHHHHHHHHHHHhhh
Q psy15555 459 SSVDRFSMEEFKNGFLTFTQPLFK 482 (488)
Q Consensus 459 ~~~~~~s~~~~~~~~~~~~~~~~~ 482 (488)
+.|++...++++.+.+++++.
T Consensus 346 ---~~~~~~~~~~~i~~~i~~~~~ 366 (376)
T 1v4v_A 346 ---NPYGDGKAGLMVARGVAWRLG 366 (376)
T ss_dssp ---CSSCCSCHHHHHHHHHHHHTT
T ss_pred ---CCCCCChHHHHHHHHHHHHhc
Confidence 567777777888888877765
No 27
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.93 E-value=3.7e-25 Score=194.64 Aligned_cols=179 Identities=23% Similarity=0.272 Sum_probs=152.9
Q ss_pred EcCCCCchhhh--ccCC------------CCCCCCeEEEEeeccC-CCCChHHHHHHHHHhH--HhhhhhccCceEEEEE
Q psy15555 269 LYPPCDTEDLK--KITH------------SKTDGPVKIISVAQFR-PEKDHPLQLRAMYQLR--QIISEELWDNLKLIFI 331 (488)
Q Consensus 269 i~~~~d~~~~~--~~~~------------~~~~~~~~i~~~g~~~-~~k~~~~ll~a~~~l~--~~~~~~~~~~~~l~iv 331 (488)
+|||+|.+.+. +... ....+.++++++|++. +.||++.++++++.+. ++. ++++|+|+
T Consensus 2 ipngvd~~~f~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~-----~~~~l~i~ 76 (200)
T 2bfw_A 2 SHNGIDCSFWNESYLTGSRDERKKSLLSKFGMDEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEF-----QEMRFIII 76 (200)
T ss_dssp ---CCCTTTSSGGGSCSCHHHHHHHHHHHTTCCSCEEEEEESCBCSSSSCHHHHHHHHHHHTTSGGG-----GGEEEEEE
T ss_pred CCCccChhhccccccccchhhHHHHHHHHcCCCCCCEEEEeeccccccCCHHHHHHHHHHHHhhccC-----CCeEEEEE
Confidence 68899988877 4421 0113556999999999 9999999999999997 666 79999999
Q ss_pred ecCCCCCcHHHHHHHHHHHHhcCCCCcEEE-ecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCC
Q psy15555 332 GSTRNEEDEVCVKDMQDLCKHLSLENNVEF-KVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGG 410 (488)
Q Consensus 332 G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~-~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~ 410 (488)
|.++ ++..+++++.+++++ +|++ +|+++.+++..+|+.||+++.||..|++|++++|||++|+|||+++.++
T Consensus 77 G~~~----~~~~~~l~~~~~~~~---~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~ 149 (200)
T 2bfw_A 77 GKGD----PELEGWARSLEEKHG---NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGG 149 (200)
T ss_dssp CCBC----HHHHHHHHHHHHHCT---TEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESCHH
T ss_pred CCCC----hHHHHHHHHHHHhcC---CEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEEeCCCC
Confidence 9875 135588888888876 8999 9999999999999999999999999999999999999999999999988
Q ss_pred CccceeccCCCccccceecC--CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcC
Q psy15555 411 PKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFS 465 (488)
Q Consensus 411 ~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s 465 (488)
.. +++ ++ .+|++++ |+++++++|.+++++|++.++++++++++.+++||
T Consensus 150 ~~-e~~-~~----~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~fs 200 (200)
T 2bfw_A 150 LR-DII-TN----ETGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFS 200 (200)
T ss_dssp HH-HHC-CT----TTCEEECTTCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTC
T ss_pred hH-HHc-CC----CceEEecCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 86 888 77 7899987 99999999999997689999999999999884475
No 28
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.91 E-value=2.2e-24 Score=185.56 Aligned_cols=152 Identities=26% Similarity=0.316 Sum_probs=133.3
Q ss_pred CCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHH--hcCCCCcEEEe
Q psy15555 285 KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCK--HLSLENNVEFK 362 (488)
Q Consensus 285 ~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~--~~~l~~~v~~~ 362 (488)
.+.++++++|+|++.+.||++.+++|++.+ ++++|+++|.++.. +++++.++ +.++.++|.+.
T Consensus 19 ~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l---------~~~~l~i~G~~~~~------~~l~~~~~~~~~~l~~~v~~~ 83 (177)
T 2f9f_A 19 FKCYGDFWLSVNRIYPEKRIELQLEVFKKL---------QDEKLYIVGWFSKG------DHAERYARKIMKIAPDNVKFL 83 (177)
T ss_dssp CCCCCSCEEEECCSSGGGTHHHHHHHHHHC---------TTSCEEEEBCCCTT------STHHHHHHHHHHHSCTTEEEE
T ss_pred cCCCCCEEEEEeccccccCHHHHHHHHHhC---------CCcEEEEEecCccH------HHHHHHHHhhhcccCCcEEEe
Confidence 446778999999999999999999999887 57899999998754 56777777 77888899999
Q ss_pred cCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceec-CCHHHHHHHHHH
Q psy15555 363 VNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLA-CDEVEYAQTIKL 441 (488)
Q Consensus 363 g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~-~~~~~l~~~i~~ 441 (488)
|+++++|+..+|+.||+++.||..|++|++++|||++|+|||+++.++.. +++.++ .+|+++ .|+++++++|.+
T Consensus 84 g~~~~~e~~~~~~~adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~-e~i~~~----~~g~~~~~d~~~l~~~i~~ 158 (177)
T 2f9f_A 84 GSVSEEELIDLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFK-ETVINE----KTGYLVNADVNEIIDAMKK 158 (177)
T ss_dssp ESCCHHHHHHHHHHCSEEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHH-HHCCBT----TTEEEECSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhCCEEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHH-HHhcCC----CccEEeCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998876 888877 789886 599999999999
Q ss_pred HHccCHHH-HHHHHHHH
Q psy15555 442 ILHLSQDT-KTRISQNA 457 (488)
Q Consensus 442 ll~~~~~~-~~~~~~~a 457 (488)
+++ |++. ++++++++
T Consensus 159 l~~-~~~~~~~~~~~~a 174 (177)
T 2f9f_A 159 VSK-NPDKFKKDCFRRA 174 (177)
T ss_dssp HHH-CTTTTHHHHHHHH
T ss_pred HHh-CHHHHHHHHHHHH
Confidence 998 7765 45554444
No 29
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.88 E-value=1.1e-21 Score=190.37 Aligned_cols=346 Identities=12% Similarity=0.045 Sum_probs=213.0
Q ss_pred ccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEE-EEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeecccee
Q psy15555 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIY-IYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFV 130 (488)
Q Consensus 52 ~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 130 (488)
.|||+++...-+ +...+.+++++|+++ +++++. +.|+.+- +..+.....|++.. . . .+...
T Consensus 25 m~ki~~v~Gtr~----~~~~~a~li~~l~~~-~~~~~~~~~tG~h~----~~~~~~~~~~~i~~--~-~---~l~~~--- 86 (396)
T 3dzc_A 25 MKKVLIVFGTRP----EAIKMAPLVQQLCQD-NRFVAKVCVTGQHR----EMLDQVLELFSITP--D-F---DLNIM--- 86 (396)
T ss_dssp CEEEEEEECSHH----HHHHHHHHHHHHHHC-TTEEEEEEECCSSS----HHHHHHHHHTTCCC--S-E---ECCCC---
T ss_pred CCeEEEEEeccH----hHHHHHHHHHHHHhC-CCCcEEEEEecccH----HHHHHHHHhcCCCC--c-e---eeecC---
Confidence 468998764432 224567899999885 577775 4454432 11222212343311 1 1 11110
Q ss_pred eccCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhh--hhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcc
Q psy15555 131 EASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP--LFSYIGGSKVACYIHYPTITKEMLTRVARRVITH 208 (488)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~--~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~ 208 (488)
........ .....+..+.+++++++||+|+........++ .+....++|++. ++.+..+++.
T Consensus 87 -~~~~~~~~---~~~~~~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h-~~ag~rs~~~----------- 150 (396)
T 3dzc_A 87 -EPGQTLNG---VTSKILLGMQQVLSSEQPDVVLVHGDTATTFAASLAAYYQQIPVGH-VEAGLRTGNI----------- 150 (396)
T ss_dssp -CTTCCHHH---HHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHTTTCCEEE-ETCCCCCSCT-----------
T ss_pred -CCCCCHHH---HHHHHHHHHHHHHHhcCCCEEEEECCchhHHHHHHHHHHhCCCEEE-EECCcccccc-----------
Confidence 00011111 12333456778899999999887654444333 333467899653 3322211100
Q ss_pred cCccccccCccchhhhHHHHHHHHHHHHH-HhcccCEEEEcChhHHHHHHHHhccCCceEEEcCC-CCchhhhcc-----
Q psy15555 209 NNSQRVANNPILTSFKLFYYKVFALLYSH-VGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPP-CDTEDLKKI----- 281 (488)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~-~d~~~~~~~----- 281 (488)
....... ..+. +.+.+|.++++|+..++++.+.+..++++.+++|+ +|...+...
T Consensus 151 -----------~~~~~~~-------~~r~~~~~~a~~~~~~se~~~~~l~~~G~~~~ki~vvGn~~~d~~~~~~~~~~~~ 212 (396)
T 3dzc_A 151 -----------YSPWPEE-------GNRKLTAALTQYHFAPTDTSRANLLQENYNAENIFVTGNTVIDALLAVREKIHTD 212 (396)
T ss_dssp -----------TSSTTHH-------HHHHHHHHTCSEEEESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHHHHHHHC
T ss_pred -----------ccCCcHH-------HHHHHHHHhcCEEECCCHHHHHHHHHcCCCcCcEEEECCcHHHHHHHhhhhcccc
Confidence 0000010 1111 23568999999999999999865555689999997 443222111
Q ss_pred -------CCCC---CCCCe-EEEEeeccC-CCCChHHHHHHHHHhHHhhhhhccCceEEEEE-ecCCCCCcHHHHHHHHH
Q psy15555 282 -------THSK---TDGPV-KIISVAQFR-PEKDHPLQLRAMYQLRQIISEELWDNLKLIFI-GSTRNEEDEVCVKDMQD 348 (488)
Q Consensus 282 -------~~~~---~~~~~-~i~~~g~~~-~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~iv-G~~~~~~~~~~~~~l~~ 348 (488)
.... ..+++ +++..+|.. ..|+++.+++|++++.++. |++++++. |.++ +..+.+++
T Consensus 213 ~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~-----~~~~~v~~~g~~~-----~~~~~l~~ 282 (396)
T 3dzc_A 213 MDLQATLESQFPMLDASKKLILVTGHRRESFGGGFERICQALITTAEQH-----PECQILYPVHLNP-----NVREPVNK 282 (396)
T ss_dssp HHHHHHHHHTCTTCCTTSEEEEEECSCBCCCTTHHHHHHHHHHHHHHHC-----TTEEEEEECCBCH-----HHHHHHHH
T ss_pred hhhHHHHHHHhCccCCCCCEEEEEECCcccchhHHHHHHHHHHHHHHhC-----CCceEEEEeCCCh-----HHHHHHHH
Confidence 0111 12344 444554543 3467899999999998877 78888775 4332 22334443
Q ss_pred HHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEe-CCCCCccceeccCCCccccce
Q psy15555 349 LCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAH-KSGGPKMDIVIEDPETCRNGF 427 (488)
Q Consensus 349 ~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~-~~~~~~~eiv~~~~~~~~~g~ 427 (488)
. .+..++|.+.+++++.++..+|+.||++|.+| + |. .+||+++|+|+|++ +.++.. |+++.+ +++
T Consensus 283 ~---~~~~~~v~~~~~lg~~~~~~l~~~ad~vv~~S---G-g~-~~EA~a~G~PvV~~~~~~~~~-e~v~~G-----~~~ 348 (396)
T 3dzc_A 283 L---LKGVSNIVLIEPQQYLPFVYLMDRAHIILTDS---G-GI-QEEAPSLGKPVLVMRETTERP-EAVAAG-----TVK 348 (396)
T ss_dssp H---TTTCTTEEEECCCCHHHHHHHHHHCSEEEESC---S-GG-GTTGGGGTCCEEECCSSCSCH-HHHHHT-----SEE
T ss_pred H---HcCCCCEEEeCCCCHHHHHHHHHhcCEEEECC---c-cH-HHHHHHcCCCEEEccCCCcch-HHHHcC-----ceE
Confidence 3 23356899999998889999999999999988 2 33 38999999999998 455553 777665 567
Q ss_pred ecC-CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy15555 428 LAC-DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 428 ~~~-~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~ 478 (488)
+++ |++++++++.++++ |++.+++|++++ ..|.....++++.++++
T Consensus 349 lv~~d~~~l~~ai~~ll~-d~~~~~~m~~~~----~~~~~~~aa~ri~~~l~ 395 (396)
T 3dzc_A 349 LVGTNQQQICDALSLLLT-DPQAYQAMSQAH----NPYGDGKACQRIADILA 395 (396)
T ss_dssp ECTTCHHHHHHHHHHHHH-CHHHHHHHHTSC----CTTCCSCHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHHHHc-CHHHHHHHhhcc----CCCcCChHHHHHHHHHh
Confidence 776 89999999999999 999999998876 44555566666666553
No 30
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.88 E-value=9.2e-22 Score=191.10 Aligned_cols=352 Identities=12% Similarity=0.071 Sum_probs=212.9
Q ss_pred ccEEEEeccCCCCCCCceehHHHHHHHHHHhCC-CeeEE-EEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccce
Q psy15555 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYP-DYKIY-IYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKF 129 (488)
Q Consensus 52 ~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~-~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 129 (488)
+|||+++...-+ +-..+.+++++|.++ + ++++. +.|+.+.....+..+ .|++.. . . .+....
T Consensus 27 ~~kI~~v~Gtr~----~~~~~a~li~~l~~~-~~~~~~~~~~tG~h~~m~~~~~~----~~~i~~--~-~---~l~v~~- 90 (403)
T 3ot5_A 27 KIKVMSIFGTRP----EAIKMAPLVLALEKE-PETFESTVVITAQHREMLDQVLE----IFDIKP--D-I---DLDIMK- 90 (403)
T ss_dssp CEEEEEEECSHH----HHHHHHHHHHHHHTC-TTTEEEEEEECC-----CHHHHH----HTTCCC--S-E---ECCCCC-
T ss_pred cceEEEEEecCh----hHHHHHHHHHHHHhC-CCCCcEEEEEecCcHHHHHHHHH----hcCCCC--C-c---ccccCC-
Confidence 368998764322 223557899999875 4 57755 445543212233332 233311 1 1 111100
Q ss_pred eeccCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhh--hhhhhCCCeeEEEEeCCccchHHHHHHHhhhhc
Q psy15555 130 VEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP--LFSYIGGSKVACYIHYPTITKEMLTRVARRVIT 207 (488)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~--~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~ 207 (488)
....... .....+..+.+++++++||+|+........++ .+....++|++ +++.+..+++
T Consensus 91 ---~~~~~~~---~~~~~~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA~~~~IPv~-h~~aglrs~~----------- 152 (403)
T 3ot5_A 91 ---KGQTLAE---ITSRVMNGINEVIAAENPDIVLVHGDTTTSFAAGLATFYQQKMLG-HVEAGLRTWN----------- 152 (403)
T ss_dssp ----CCCHHH---HHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHHTTCEEE-EESCCCCCSC-----------
T ss_pred ---CCCCHHH---HHHHHHHHHHHHHHHcCCCEEEEECCchhHHHHHHHHHHhCCCEE-EEECCccccc-----------
Confidence 0001111 12334456778899999999887654333332 33346789965 3332221110
Q ss_pred ccCccccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCC-CCchhhhccCC---
Q psy15555 208 HNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPP-CDTEDLKKITH--- 283 (488)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~-~d~~~~~~~~~--- 283 (488)
..........+ ..+-+.+|.++++|+..++++.+.+..++++.+++|+ +|...+.....
T Consensus 153 ----------~~~~~p~~~~r-------~~~~~~a~~~~~~se~~~~~l~~~Gi~~~~i~vvGn~~~D~~~~~~~~~~~~ 215 (403)
T 3ot5_A 153 ----------KYSPFPEEMNR-------QLTGVMADIHFSPTKQAKENLLAEGKDPATIFVTGNTAIDALKTTVQKDYHH 215 (403)
T ss_dssp ----------TTSSTTHHHHH-------HHHHHHCSEEEESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHSCTTCCC
T ss_pred ----------cccCCcHHHHH-------HHHHHhcCEEECCCHHHHHHHHHcCCCcccEEEeCCchHHHHHhhhhhhcch
Confidence 00000001111 1123447999999999999999976555689999986 45433322110
Q ss_pred ----CCCCCCeEEEEeeccCC-CCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCc
Q psy15555 284 ----SKTDGPVKIISVAQFRP-EKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENN 358 (488)
Q Consensus 284 ----~~~~~~~~i~~~g~~~~-~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~ 358 (488)
...+++.+++.+||... .|+++.+++|+..+.+++ |++++++.+ |+. +...+.+++. .+..++
T Consensus 216 ~~~~~l~~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~~-----~~~~~v~~~-~~~---~~~~~~l~~~---~~~~~~ 283 (403)
T 3ot5_A 216 PILENLGDNRLILMTAHRRENLGEPMQGMFEAVREIVESR-----EDTELVYPM-HLN---PAVREKAMAI---LGGHER 283 (403)
T ss_dssp HHHHSCTTCEEEEECCCCHHHHTTHHHHHHHHHHHHHHHC-----TTEEEEEEC-CSC---HHHHHHHHHH---HTTCTT
T ss_pred HHHHhccCCCEEEEEeCcccccCcHHHHHHHHHHHHHHhC-----CCceEEEec-CCC---HHHHHHHHHH---hCCCCC
Confidence 01223345555665432 367899999999998887 788887763 221 1222333333 233468
Q ss_pred EEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeC-CCCCccceeccCCCccccceecC-CHHHHH
Q psy15555 359 VEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHK-SGGPKMDIVIEDPETCRNGFLAC-DEVEYA 436 (488)
Q Consensus 359 v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~-~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~ 436 (488)
|.+.+++++.++..+|+.||++|.+| +|.. +||+++|+|+|+.+ .++. .+.++. +++++++ |+++++
T Consensus 284 v~l~~~l~~~~~~~l~~~ad~vv~~S----Gg~~-~EA~a~g~PvV~~~~~~~~-~e~v~~-----g~~~lv~~d~~~l~ 352 (403)
T 3ot5_A 284 IHLIEPLDAIDFHNFLRKSYLVFTDS----GGVQ-EEAPGMGVPVLVLRDTTER-PEGIEA-----GTLKLIGTNKENLI 352 (403)
T ss_dssp EEEECCCCHHHHHHHHHHEEEEEECC----HHHH-HHGGGTTCCEEECCSSCSC-HHHHHH-----TSEEECCSCHHHHH
T ss_pred EEEeCCCCHHHHHHHHHhcCEEEECC----ccHH-HHHHHhCCCEEEecCCCcc-hhheeC-----CcEEEcCCCHHHHH
Confidence 99999998889999999999999887 3444 89999999999984 4544 477654 4788887 999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhh
Q psy15555 437 QTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLFK 482 (488)
Q Consensus 437 ~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~ 482 (488)
+++.++++ |++.+++|++++ ..|.....++++.+.+.+.+.
T Consensus 353 ~ai~~ll~-~~~~~~~m~~~~----~~~g~~~aa~rI~~~l~~~l~ 393 (403)
T 3ot5_A 353 KEALDLLD-NKESHDKMAQAA----NPYGDGFAANRILAAIKSHFE 393 (403)
T ss_dssp HHHHHHHH-CHHHHHHHHHSC----CTTCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHc-CHHHHHHHHhhc----CcccCCcHHHHHHHHHHHHhC
Confidence 99999999 999999998765 345555556666666666554
No 31
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.88 E-value=7.5e-21 Score=182.64 Aligned_cols=340 Identities=11% Similarity=0.081 Sum_probs=201.6
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceeec
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVEA 132 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 132 (488)
+||++.. +.+||--.-+..++++|.++ +++|.++++.. +.+.+..+. .. +++..++.......
T Consensus 3 ~~i~i~~---GGTgGHi~palala~~L~~~--g~~V~~vg~~~-g~e~~~v~~----------~g-~~~~~i~~~~~~~~ 65 (365)
T 3s2u_A 3 GNVLIMA---GGTGGHVFPALACAREFQAR--GYAVHWLGTPR-GIENDLVPK----------AG-LPLHLIQVSGLRGK 65 (365)
T ss_dssp CEEEEEC---CSSHHHHHHHHHHHHHHHHT--TCEEEEEECSS-STHHHHTGG----------GT-CCEEECC-------
T ss_pred CcEEEEc---CCCHHHHHHHHHHHHHHHhC--CCEEEEEECCc-hHhhchhhh----------cC-CcEEEEECCCcCCC
Confidence 5787742 22223334477899999998 56666655542 222222211 11 33333333222222
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhh-hhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCc
Q psy15555 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP-LFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNS 211 (488)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~-~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~ 211 (488)
..+..+......+.......+++++++||+|+.+.++..... ++....++|++++-..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~l~~~~PDvVi~~g~~~s~p~~laA~~~~iP~vihe~n--------------------- 124 (365)
T 3s2u_A 66 GLKSLVKAPLELLKSLFQALRVIRQLRPVCVLGLGGYVTGPGGLAARLNGVPLVIHEQN--------------------- 124 (365)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHCCSEEEECSSSTHHHHHHHHHHTTCCEEEEECS---------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHcCCCEEEEecc---------------------
Confidence 223333333444555667788999999999998876655433 3344678998863221
Q ss_pred cccccCccchhhhHHHHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCC--CCCCCC
Q psy15555 212 QRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITH--SKTDGP 289 (488)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~--~~~~~~ 289 (488)
...... .+.+.+.++.+....+.. +....+..+++|++..+.+..... ....++
T Consensus 125 ------~~~G~~-----------nr~l~~~a~~v~~~~~~~-------~~~~~k~~~~g~pvr~~~~~~~~~~~~~~~~~ 180 (365)
T 3s2u_A 125 ------AVAGTA-----------NRSLAPIARRVCEAFPDT-------FPASDKRLTTGNPVRGELFLDAHARAPLTGRR 180 (365)
T ss_dssp ------SSCCHH-----------HHHHGGGCSEEEESSTTS-------SCC---CEECCCCCCGGGCCCTTSSCCCTTSC
T ss_pred ------hhhhhH-----------HHhhccccceeeeccccc-------ccCcCcEEEECCCCchhhccchhhhcccCCCC
Confidence 111111 122446688888776542 333457788899887665543332 122344
Q ss_pred e-EEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEE-EecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCCh
Q psy15555 290 V-KIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIF-IGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPY 367 (488)
Q Consensus 290 ~-~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~i-vG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 367 (488)
+ ++++.|+....+..+.+.+++..+..+ .+..++. +|.+ ..+.+.+..++.+ .++.+.+++
T Consensus 181 ~~ilv~gGs~g~~~~~~~~~~al~~l~~~------~~~~vi~~~G~~-------~~~~~~~~~~~~~--~~~~v~~f~-- 243 (365)
T 3s2u_A 181 VNLLVLGGSLGAEPLNKLLPEALAQVPLE------IRPAIRHQAGRQ-------HAEITAERYRTVA--VEADVAPFI-- 243 (365)
T ss_dssp CEEEECCTTTTCSHHHHHHHHHHHTSCTT------TCCEEEEECCTT-------THHHHHHHHHHTT--CCCEEESCC--
T ss_pred cEEEEECCcCCccccchhhHHHHHhcccc------cceEEEEecCcc-------ccccccceecccc--cccccccch--
Confidence 4 455556666665566677787777544 2445444 3433 1255666666665 357888999
Q ss_pred HHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCcc-------ceeccCCCccccceecC----CHHHHH
Q psy15555 368 EDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKM-------DIVIEDPETCRNGFLAC----DEVEYA 436 (488)
Q Consensus 368 ~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~-------eiv~~~~~~~~~g~~~~----~~~~l~ 436 (488)
+++.++|+.||++|.-+ ++.++.|++++|+|+|..+.+...+ +.+.+. +.|++++ |+++|+
T Consensus 244 ~dm~~~l~~aDlvI~ra----G~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~----G~a~~l~~~~~~~~~L~ 315 (365)
T 3s2u_A 244 SDMAAAYAWADLVICRA----GALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRS----GAGRLLPQKSTGAAELA 315 (365)
T ss_dssp SCHHHHHHHCSEEEECC----CHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTT----TSEEECCTTTCCHHHHH
T ss_pred hhhhhhhccceEEEecC----CcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHC----CCEEEeecCCCCHHHHH
Confidence 89999999999988643 4688999999999999877643221 234444 5677764 689999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Q psy15555 437 QTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPL 480 (488)
Q Consensus 437 ~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~ 480 (488)
++|.++++ |++.+++|++++++.....+.+++++.++++.+.+
T Consensus 316 ~~i~~ll~-d~~~~~~m~~~a~~~~~~~aa~~ia~~i~~larG~ 358 (365)
T 3s2u_A 316 AQLSEVLM-HPETLRSMADQARSLAKPEATRTVVDACLEVARGL 358 (365)
T ss_dssp HHHHHHHH-CTHHHHHHHHHHHHTCCTTHHHHHHHHHHHHC---
T ss_pred HHHHHHHC-CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccc
Confidence 99999999 99999999999987765556666666666665443
No 32
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.88 E-value=1.6e-21 Score=183.48 Aligned_cols=197 Identities=15% Similarity=0.042 Sum_probs=149.2
Q ss_pred HHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCCCCCCCCeEEEEeeccCCCCChHHHHHHHHH
Q psy15555 234 LYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQ 313 (488)
Q Consensus 234 ~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~ 313 (488)
.++.++++||.|++.|+.+++.+.+.+....++.++++. |... +.......++++++|+|++..... ++.
T Consensus 126 ~E~~~y~~aD~Ii~~S~~~~~~l~~~G~~~~ki~~~~~~-~~~~--~~~~~~~~~~~~i~yaG~l~k~~~----L~~--- 195 (339)
T 3rhz_A 126 RTIAYYNKADVVVAPSQKMIDKLRDFGMNVSKTVVQGMW-DHPT--QAPMFPAGLKREIHFPGNPERFSF----VKE--- 195 (339)
T ss_dssp HHHHHHTTCSEEEESCHHHHHHHHHTTCCCSEEEECCSC-CCCC--CCCCCCCEEEEEEEECSCTTTCGG----GGG---
T ss_pred HHHHHHHHCCEEEECCHHHHHHHHHcCCCcCceeecCCC-CccC--cccccccCCCcEEEEeCCcchhhH----HHh---
Confidence 577889999999999999999999854433456444432 3211 111112234678999999984221 222
Q ss_pred hHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcC-C------C
Q psy15555 314 LRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAM-W------N 386 (488)
Q Consensus 314 l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s-~------~ 386 (488)
+ . ++++|+|+|+|+.. .++ +|+|+|++|.+|+..+|+.+|+.+... . .
T Consensus 196 l---~-----~~~~f~ivG~G~~~----------------~l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~ 250 (339)
T 3rhz_A 196 W---K-----YDIPLKVYTWQNVE----------------LPQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQS 250 (339)
T ss_dssp C---C-----CSSCEEEEESCCCC----------------CCT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHT
T ss_pred C---C-----CCCeEEEEeCCccc----------------CcC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHH
Confidence 2 2 68999999999732 234 899999999999999999989766541 1 1
Q ss_pred CcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCH
Q psy15555 387 EHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSM 466 (488)
Q Consensus 387 e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~ 466 (488)
...|++++||||+|+|||+++.++.. ++++++ ++|+.+++.+++++++..+ +++.+++|++++++.++++++
T Consensus 251 ~~~P~Kl~eymA~G~PVI~~~~~~~~-~~v~~~----~~G~~~~~~~e~~~~i~~l---~~~~~~~m~~na~~~a~~~~~ 322 (339)
T 3rhz_A 251 LYCSYKLGSFLAAGIPVIVQEGIANQ-ELIENN----GLGWIVKDVEEAIMKVKNV---NEDEYIELVKNVRSFNPILRK 322 (339)
T ss_dssp TCCCHHHHHHHHHTCCEEEETTCTTT-HHHHHH----TCEEEESSHHHHHHHHHHC---CHHHHHHHHHHHHHHTHHHHT
T ss_pred hcChHHHHHHHHcCCCEEEccChhHH-HHHHhC----CeEEEeCCHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHhhc
Confidence 24589999999999999999998886 999888 8999999999999988874 567899999999998877777
Q ss_pred HHHHHHH
Q psy15555 467 EEFKNGF 473 (488)
Q Consensus 467 ~~~~~~~ 473 (488)
+.+.++.
T Consensus 323 ~~f~k~~ 329 (339)
T 3rhz_A 323 GFFTRRL 329 (339)
T ss_dssp THHHHHH
T ss_pred cHHHHHH
Confidence 7776664
No 33
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.85 E-value=3e-19 Score=175.26 Aligned_cols=351 Identities=10% Similarity=-0.011 Sum_probs=211.2
Q ss_pred cccccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeecc-
Q psy15555 49 YNVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRR- 127 (488)
Q Consensus 49 ~~~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 127 (488)
+..+|||+++... ++|....+..++++|.++ +++|.+++... ....... .. +.+..++..
T Consensus 17 ~~~~MrIl~~~~~---~~Gh~~~~~~la~~L~~~--GheV~v~~~~~---~~~~~~~----------~g-~~~~~~~~~~ 77 (412)
T 3otg_A 17 EGRHMRVLFASLG---THGHTYPLLPLATAARAA--GHEVTFATGEG---FAGTLRK----------LG-FEPVATGMPV 77 (412)
T ss_dssp -CCSCEEEEECCS---SHHHHGGGHHHHHHHHHT--TCEEEEEECGG---GHHHHHH----------TT-CEEEECCCCH
T ss_pred ccceeEEEEEcCC---CcccHHHHHHHHHHHHHC--CCEEEEEccHH---HHHHHHh----------cC-CceeecCccc
Confidence 4557999998633 345667788999999999 56666666541 1222211 12 445544420
Q ss_pred --cee-----------------eccCchhHHHHHH--HHHHHHHHHHHhhhcCCcEEEecCCccchhhhhhhhCCCeeEE
Q psy15555 128 --KFV-----------------EASLYPYFTLLGQ--SIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVAC 186 (488)
Q Consensus 128 --~~~-----------------~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~~~~~~~~~v~ 186 (488)
... ..........+.. .......+.+.+++++||+|+.+..... ...+....++|++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvVv~~~~~~~-~~~aa~~~giP~v~ 156 (412)
T 3otg_A 78 FDGFLAALRIRFDTDSPEGLTPEQLSELPQIVFGRVIPQRVFDELQPVIERLRPDLVVQEISNYG-AGLAALKAGIPTIC 156 (412)
T ss_dssp HHHHHHHHHHHHSCSCCTTCCHHHHTTSHHHHHHTHHHHHHHHHHHHHHHHHCCSEEEEETTCHH-HHHHHHHHTCCEEE
T ss_pred ccchhhhhhhhhcccCCccCChhHhhHHHHHHHhccchHHHHHHHHHHHHhcCCCEEEECchhhH-HHHHHHHcCCCEEE
Confidence 000 0000000111111 1112355677888999999887643322 23444467999998
Q ss_pred EEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHHHHHHHH-HHHHH--------hcccCEEEEcChhHHHHHH
Q psy15555 187 YIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFAL-LYSHV--------GKYSDIIMVNSSWTEEHVI 257 (488)
Q Consensus 187 ~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~d~ii~~s~~~~~~~~ 257 (488)
+.|.+...... .....+.+.. ..+.. ...+|.+++.++...+...
T Consensus 157 ~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~i~~~~~~~~~~~ 210 (412)
T 3otg_A 157 HGVGRDTPDDL--------------------------TRSIEEEVRGLAQRLGLDLPPGRIDGFGNPFIDIFPPSLQEPE 210 (412)
T ss_dssp ECCSCCCCSHH--------------------------HHHHHHHHHHHHHHTTCCCCSSCCGGGGCCEEECSCGGGSCHH
T ss_pred ecccccCchhh--------------------------hHHHHHHHHHHHHHcCCCCCcccccCCCCeEEeeCCHHhcCCc
Confidence 77765421110 0111111111 11111 2357889999887766665
Q ss_pred HHhccCCceEEEcCCCCc-hhhhcc-CCCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCC
Q psy15555 258 QLWNCQLKTYKLYPPCDT-EDLKKI-THSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTR 335 (488)
Q Consensus 258 ~~~~~~~k~~vi~~~~d~-~~~~~~-~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~ 335 (488)
+..... ...+.+.+.+. ...... .....+++.+++++|+.. .++.+.+.+++..+.+ .+.++++++++.
T Consensus 211 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~G~~~-~~~~~~~~~~~~~l~~-------~~~~~~~~~g~~ 281 (412)
T 3otg_A 211 FRARPR-RHELRPVPFAEQGDLPAWLSSRDTARPLVYLTLGTSS-GGTVEVLRAAIDGLAG-------LDADVLVASGPS 281 (412)
T ss_dssp HHTCTT-EEECCCCCCCCCCCCCGGGGGSCTTSCEEEEECTTTT-CSCHHHHHHHHHHHHT-------SSSEEEEECCSS
T ss_pred ccCCCC-cceeeccCCCCCCCCCCccccccCCCCEEEEEcCCCC-cCcHHHHHHHHHHHHc-------CCCEEEEEECCC
Confidence 433211 11111112111 111111 011224566788888886 6677777777666643 256666666543
Q ss_pred C-CCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCC----
Q psy15555 336 N-EEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGG---- 410 (488)
Q Consensus 336 ~-~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~---- 410 (488)
. . ++++ +++++|.+.|++ ++..+|+.||++|..+ ++.+++|||++|+|+|+.+.++
T Consensus 282 ~~~------~~l~------~~~~~v~~~~~~---~~~~~l~~ad~~v~~~----g~~t~~Ea~a~G~P~v~~p~~~~q~~ 342 (412)
T 3otg_A 282 LDV------SGLG------EVPANVRLESWV---PQAALLPHVDLVVHHG----GSGTTLGALGAGVPQLSFPWAGDSFA 342 (412)
T ss_dssp CCC------TTCC------CCCTTEEEESCC---CHHHHGGGCSEEEESC----CHHHHHHHHHHTCCEEECCCSTTHHH
T ss_pred CCh------hhhc------cCCCcEEEeCCC---CHHHHHhcCcEEEECC----chHHHHHHHHhCCCEEecCCchhHHH
Confidence 2 2 1121 246789999998 4889999999999764 3478999999999999987654
Q ss_pred CccceeccCCCccccceecC----CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q psy15555 411 PKMDIVIEDPETCRNGFLAC----DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQP 479 (488)
Q Consensus 411 ~~~eiv~~~~~~~~~g~~~~----~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~ 479 (488)
+. +.+.+. ++|++++ |++++++++.++++ |++.+++|++.+++..+.++++.+++.+.+++..
T Consensus 343 ~~-~~v~~~----g~g~~~~~~~~~~~~l~~ai~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 343 NA-QAVAQA----GAGDHLLPDNISPDSVSGAAKRLLA-EESYRAGARAVAAEIAAMPGPDEVVRLLPGFASR 409 (412)
T ss_dssp HH-HHHHHH----TSEEECCGGGCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHSCCHHHHHTTHHHHHC-
T ss_pred HH-HHHHHc----CCEEecCcccCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 33 555555 6888875 78999999999999 9999999999999988888999999998887743
No 34
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.80 E-value=1.1e-17 Score=164.92 Aligned_cols=367 Identities=11% Similarity=-0.001 Sum_probs=202.0
Q ss_pred ccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceee
Q psy15555 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVE 131 (488)
Q Consensus 52 ~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 131 (488)
.|||+++. ..++|....+..++++|.++ |++|.++++... ...... .. +.+..++......
T Consensus 7 m~kIl~~~---~~~~Gh~~p~~~la~~L~~~--G~~V~~~~~~~~---~~~~~~----------~g-~~~~~~~~~~~~~ 67 (430)
T 2iyf_A 7 PAHIAMFS---IAAHGHVNPSLEVIRELVAR--GHRVTYAIPPVF---ADKVAA----------TG-PRPVLYHSTLPGP 67 (430)
T ss_dssp -CEEEEEC---CSCHHHHGGGHHHHHHHHHT--TCEEEEEECGGG---HHHHHT----------TS-CEEEECCCCSCCT
T ss_pred cceEEEEe---CCCCccccchHHHHHHHHHC--CCeEEEEeCHHH---HHHHHh----------CC-CEEEEcCCcCccc
Confidence 36999863 23345667889999999998 567777766521 111111 12 4444444321000
Q ss_pred --------ccCchhHHHHHH-HHHHHHHHHHHhhhcCCcEEEecCCccchhhhhhhhCCCeeEEEEeCCccchHHHHHHH
Q psy15555 132 --------ASLYPYFTLLGQ-SIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVA 202 (488)
Q Consensus 132 --------~~~~~~~~~~~~-~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~ 202 (488)
......+..+.. .......+.+.++..+||+||...... ....+....++|++...+.+..+..+.....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~-~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~ 146 (430)
T 2iyf_A 68 DADPEAWGSTLLDNVEPFLNDAIQALPQLADAYADDIPDLVLHDITSY-PARVLARRWGVPAVSLSPNLVAWKGYEEEVA 146 (430)
T ss_dssp TSCGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHTTSCCSEEEEETTCH-HHHHHHHHHTCCEEEEESSCCCCTTHHHHTH
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEECCccH-HHHHHHHHcCCCEEEEecccccccccccccc
Confidence 000111111111 123344566778889999888654322 2223333568999887765432111100000
Q ss_pred hhhhcccCccccccCccchhhhHHHHHHHHHHHHH---------HhcccCEEEEcChhHHHHHHHHhccCCc-eEEEcCC
Q psy15555 203 RRVITHNNSQRVANNPILTSFKLFYYKVFALLYSH---------VGKYSDIIMVNSSWTEEHVIQLWNCQLK-TYKLYPP 272 (488)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~d~ii~~s~~~~~~~~~~~~~~~k-~~vi~~~ 272 (488)
... +. .. .+ ..... .+...+..+.+. ....+|.+++.+....+.....+ +.+ +..++++
T Consensus 147 ~~~--~~---~~-~~--~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~v~~vG~~ 215 (430)
T 2iyf_A 147 EPM--WR---EP-RQ--TERGR-AYYARFEAWLKENGITEHPDTFASHPPRSLVLIPKALQPHADRV--DEDVYTFVGAC 215 (430)
T ss_dssp HHH--HH---HH-HH--SHHHH-HHHHHHHHHHHHTTCCSCHHHHHHCCSSEEECSCGGGSTTGGGS--CTTTEEECCCC
T ss_pred cch--hh---hh-cc--chHHH-HHHHHHHHHHHHhCCCCCHHHHhcCCCcEEEeCcHHhCCCcccC--CCccEEEeCCc
Confidence 000 00 00 00 00000 011111111111 12246888888776544332212 234 7777765
Q ss_pred CCchhh-hccCCCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEE-EEEecCCCCCcHHHHHHHHHHH
Q psy15555 273 CDTEDL-KKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKL-IFIGSTRNEEDEVCVKDMQDLC 350 (488)
Q Consensus 273 ~d~~~~-~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l-~ivG~~~~~~~~~~~~~l~~~~ 350 (488)
++.... ........++..+++++|++. .+..+.+.+++..+. +. +++++ +++|.++.. ++++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~v~v~~Gs~~-~~~~~~~~~~~~~l~-~~-----~~~~~~~~~G~~~~~------~~l~--- 279 (430)
T 2iyf_A 216 QGDRAEEGGWQRPAGAEKVVLVSLGSAF-TKQPAFYRECVRAFG-NL-----PGWHLVLQIGRKVTP------AELG--- 279 (430)
T ss_dssp C-----CCCCCCCTTCSEEEEEECTTTC-C-CHHHHHHHHHHHT-TC-----TTEEEEEECC---CG------GGGC---
T ss_pred CCCCCCCCCCccccCCCCeEEEEcCCCC-CCcHHHHHHHHHHHh-cC-----CCeEEEEEeCCCCCh------HHhc---
Confidence 542210 011111223456788999987 455444444444443 21 36677 467876532 1221
Q ss_pred HhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCC----CccceeccCCCccccc
Q psy15555 351 KHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGG----PKMDIVIEDPETCRNG 426 (488)
Q Consensus 351 ~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~----~~~eiv~~~~~~~~~g 426 (488)
.++++|.+.|++++. .+|+.||++|..+ ++.+++|||++|+|+|+.+..+ +. +.+.+. +.|
T Consensus 280 ---~~~~~v~~~~~~~~~---~~l~~ad~~v~~~----G~~t~~Ea~~~G~P~i~~p~~~~q~~~a-~~~~~~----g~g 344 (430)
T 2iyf_A 280 ---ELPDNVEVHDWVPQL---AILRQADLFVTHA----GAGGSQEGLATATPMIAVPQAVDQFGNA-DMLQGL----GVA 344 (430)
T ss_dssp ---SCCTTEEEESSCCHH---HHHTTCSEEEECC----CHHHHHHHHHTTCCEEECCCSHHHHHHH-HHHHHT----TSE
T ss_pred ---cCCCCeEEEecCCHH---HHhhccCEEEECC----CccHHHHHHHhCCCEEECCCccchHHHH-HHHHHc----CCE
Confidence 246789999999654 7899999988754 3368999999999999998754 23 445555 678
Q ss_pred eecC----CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhh
Q psy15555 427 FLAC----DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLF 481 (488)
Q Consensus 427 ~~~~----~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~ 481 (488)
+.++ |+++++++|.++++ |++.++++++.+++..+.++++.+++.+.+++++..
T Consensus 345 ~~~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 402 (430)
T 2iyf_A 345 RKLATEEATADLLRETALALVD-DPEVARRLRRIQAEMAQEGGTRRAADLIEAELPARH 402 (430)
T ss_dssp EECCCC-CCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSCC--
T ss_pred EEcCCCCCCHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhccc
Confidence 8875 78999999999999 999999999999887777888888888877765543
No 35
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.77 E-value=5.6e-18 Score=165.33 Aligned_cols=153 Identities=9% Similarity=0.029 Sum_probs=104.4
Q ss_pred CCCeEEEEeeccCCCC----------ChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCC
Q psy15555 287 DGPVKIISVAQFRPEK----------DHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLE 356 (488)
Q Consensus 287 ~~~~~i~~~g~~~~~k----------~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~ 356 (488)
+++.+++++|++...+ .+..+++++..+ +++++++++++.. +.+. .++
T Consensus 226 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~----------~~~~v~~~~~~~~------~~l~------~~~ 283 (398)
T 4fzr_A 226 KQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL----------GFEVVVAVSDKLA------QTLQ------PLP 283 (398)
T ss_dssp SSCEEECC----------------CCSHHHHHHHGGGG----------TCEEEECCCC--------------------CC
T ss_pred CCCEEEEEccCcccccccccccchHHHHHHHHHHHHhC----------CCEEEEEeCCcch------hhhc------cCC
Confidence 4567888889986544 344444444332 5688888776421 2222 236
Q ss_pred CcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCC----CCccceeccCCCccccceecC--
Q psy15555 357 NNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSG----GPKMDIVIEDPETCRNGFLAC-- 430 (488)
Q Consensus 357 ~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~----~~~~eiv~~~~~~~~~g~~~~-- 430 (488)
++|.+.|+++ +..+++.||++|. .+++.+++|||++|+|+|+.+.. ++. +.+.+. +.|+.++
T Consensus 284 ~~v~~~~~~~---~~~ll~~ad~~v~----~gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a-~~~~~~----g~g~~~~~~ 351 (398)
T 4fzr_A 284 EGVLAAGQFP---LSAIMPACDVVVH----HGGHGTTLTCLSEGVPQVSVPVIAEVWDSA-RLLHAA----GAGVEVPWE 351 (398)
T ss_dssp TTEEEESCCC---HHHHGGGCSEEEE----CCCHHHHHHHHHTTCCEEECCCSGGGHHHH-HHHHHT----TSEEECC--
T ss_pred CcEEEeCcCC---HHHHHhhCCEEEe----cCCHHHHHHHHHhCCCEEecCCchhHHHHH-HHHHHc----CCEEecCcc
Confidence 7999999984 6778999999995 34467899999999999996654 333 455555 7888876
Q ss_pred --CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q psy15555 431 --DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFL 474 (488)
Q Consensus 431 --~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~ 474 (488)
|++++++++.++++ |++.++++++.+++..+..+++.+++.+.
T Consensus 352 ~~~~~~l~~ai~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (398)
T 4fzr_A 352 QAGVESVLAACARIRD-DSSYVGNARRLAAEMATLPTPADIVRLIE 396 (398)
T ss_dssp -----CHHHHHHHHHH-CTHHHHHHHHHHHHHTTSCCHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 78899999999999 99999999999988888889998887764
No 36
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.76 E-value=1.5e-17 Score=161.90 Aligned_cols=161 Identities=8% Similarity=-0.002 Sum_probs=119.3
Q ss_pred CCCeEEEEeeccCCCCCh-HHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCC
Q psy15555 287 DGPVKIISVAQFRPEKDH-PLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNL 365 (488)
Q Consensus 287 ~~~~~i~~~g~~~~~k~~-~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 365 (488)
+++.++++.|+....++. ..+++++.+. ++. |+++++++++++.. +.+. +++++|.+.+++
T Consensus 217 ~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~-----p~~~~v~~~~~~~~------~~l~------~~~~~v~~~~~~ 278 (391)
T 3tsa_A 217 SARRVCICMGRMVLNATGPAPLLRAVAAA-TEL-----PGVEAVIAVPPEHR------ALLT------DLPDNARIAESV 278 (391)
T ss_dssp SSEEEEEECCHHHHHHHCSHHHHHHHHHH-HTS-----TTEEEEEECCGGGG------GGCT------TCCTTEEECCSC
T ss_pred CCCEEEEEcCCCCCcccchHHHHHHHHHh-ccC-----CCeEEEEEECCcch------hhcc------cCCCCEEEeccC
Confidence 345677778888654444 6677777777 665 78999999876421 2221 346789999998
Q ss_pred ChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCC----CccceeccCCCccccceecC------CHHHH
Q psy15555 366 PYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGG----PKMDIVIEDPETCRNGFLAC------DEVEY 435 (488)
Q Consensus 366 ~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~----~~~eiv~~~~~~~~~g~~~~------~~~~l 435 (488)
+..+ +++.||++|.. +++.+++|||++|+|+|+.+..+ +. +.+.+. +.|..++ |++++
T Consensus 279 ~~~~---ll~~ad~~v~~----~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a-~~~~~~----g~g~~~~~~~~~~~~~~l 346 (391)
T 3tsa_A 279 PLNL---FLRTCELVICA----GGSGTAFTATRLGIPQLVLPQYFDQFDYA-RNLAAA----GAGICLPDEQAQSDHEQF 346 (391)
T ss_dssp CGGG---TGGGCSEEEEC----CCHHHHHHHHHTTCCEEECCCSTTHHHHH-HHHHHT----TSEEECCSHHHHTCHHHH
T ss_pred CHHH---HHhhCCEEEeC----CCHHHHHHHHHhCCCEEecCCcccHHHHH-HHHHHc----CCEEecCcccccCCHHHH
Confidence 7654 45999999963 44468999999999999976532 22 445555 6788764 48999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy15555 436 AQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 436 ~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~ 478 (488)
++++.++++ |++.++++++.+++..+..+++.+++.+.+++.
T Consensus 347 ~~ai~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 347 TDSIATVLG-DTGFAAAAIKLSDEITAMPHPAALVRTLENTAA 388 (391)
T ss_dssp HHHHHHHHT-CTHHHHHHHHHHHHHHTSCCHHHHHHHHHHC--
T ss_pred HHHHHHHHc-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 999999999 999999999998888888899888887766543
No 37
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.76 E-value=1.4e-16 Score=153.14 Aligned_cols=272 Identities=13% Similarity=0.030 Sum_probs=173.1
Q ss_pred HHHHHHHhhhcCCcEEEecCCccchhh-hhhhhCCCeeEEEEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHH
Q psy15555 148 MILGVEALLSFQPDIYIDTMGYAFTYP-LFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLF 226 (488)
Q Consensus 148 ~~~~~~~l~~~~pDiii~~~~~~~~~~-~~~~~~~~~~v~~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (488)
+..+.+++++++||+++.+......++ .+....++|++ +++....+. .. ......
T Consensus 83 ~~~l~~~l~~~kPD~Vlv~gd~~~~~aalaA~~~~IPv~-h~eaglrs~--------------------~~---~~pee~ 138 (385)
T 4hwg_A 83 IEKVDEVLEKEKPDAVLFYGDTNSCLSAIAAKRRKIPIF-HMEAGNRCF--------------------DQ---RVPEEI 138 (385)
T ss_dssp HHHHHHHHHHHCCSEEEEESCSGGGGGHHHHHHTTCCEE-EESCCCCCS--------------------CT---TSTHHH
T ss_pred HHHHHHHHHhcCCcEEEEECCchHHHHHHHHHHhCCCEE-EEeCCCccc--------------------cc---cCcHHH
Confidence 455778899999998876543322222 33346789964 333221100 00 000001
Q ss_pred HHHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCC-CCchhhhc---cCC------CCCCCCeEEEEee
Q psy15555 227 YYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPP-CDTEDLKK---ITH------SKTDGPVKIISVA 296 (488)
Q Consensus 227 ~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~-~d~~~~~~---~~~------~~~~~~~~i~~~g 296 (488)
.++ .+-+.+|.++++|+..++++.+.+..++++.+++|+ +|...... ... ....++.+++..+
T Consensus 139 nR~-------~~~~~a~~~~~~te~~~~~l~~~G~~~~~I~vtGnp~~D~~~~~~~~~~~~~~~~~lgl~~~~~iLvt~h 211 (385)
T 4hwg_A 139 NRK-------IIDHISDVNITLTEHARRYLIAEGLPAELTFKSGSHMPEVLDRFMPKILKSDILDKLSLTPKQYFLISSH 211 (385)
T ss_dssp HHH-------HHHHHCSEEEESSHHHHHHHHHTTCCGGGEEECCCSHHHHHHHHHHHHHHCCHHHHTTCCTTSEEEEEEC
T ss_pred HHH-------HHHhhhceeecCCHHHHHHHHHcCCCcCcEEEECCchHHHHHHhhhhcchhHHHHHcCCCcCCEEEEEeC
Confidence 111 122457999999999999999976656689999997 45332210 000 1223455566666
Q ss_pred ccC---CCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhc-C-C--CCcEEEecCCChHH
Q psy15555 297 QFR---PEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHL-S-L--ENNVEFKVNLPYED 369 (488)
Q Consensus 297 ~~~---~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~-~-l--~~~v~~~g~~~~~e 369 (488)
+.+ ..+++..+++|+.++.++. ++.+++ +.+| .+++.+++. + + .++|.+.+.+++.+
T Consensus 212 r~e~~~~~~~l~~ll~al~~l~~~~------~~~vv~-p~~p---------~~~~~l~~~~~~~~~~~~v~l~~~lg~~~ 275 (385)
T 4hwg_A 212 REENVDVKNNLKELLNSLQMLIKEY------NFLIIF-STHP---------RTKKRLEDLEGFKELGDKIRFLPAFSFTD 275 (385)
T ss_dssp CC-----CHHHHHHHHHHHHHHHHH------CCEEEE-EECH---------HHHHHHHTSGGGGGTGGGEEECCCCCHHH
T ss_pred CchhcCcHHHHHHHHHHHHHHHhcC------CeEEEE-ECCh---------HHHHHHHHHHHHhcCCCCEEEEcCCCHHH
Confidence 543 2356788999999987653 455544 4453 244445444 3 2 36899999998889
Q ss_pred HHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC-CHHHHHHHHHHHHccCHH
Q psy15555 370 MKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKLILHLSQD 448 (488)
Q Consensus 370 l~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~~~~~ 448 (488)
+..+|+.||+++..| |....||+++|+|+|+.+......|.++.+ ++.++. |++++.+++.++++ |++
T Consensus 276 ~~~l~~~adlvvt~S-----Ggv~~EA~alG~Pvv~~~~~ter~e~v~~G-----~~~lv~~d~~~i~~ai~~ll~-d~~ 344 (385)
T 4hwg_A 276 YVKLQMNAFCILSDS-----GTITEEASILNLPALNIREAHERPEGMDAG-----TLIMSGFKAERVLQAVKTITE-EHD 344 (385)
T ss_dssp HHHHHHHCSEEEECC-----TTHHHHHHHTTCCEEECSSSCSCTHHHHHT-----CCEECCSSHHHHHHHHHHHHT-TCB
T ss_pred HHHHHHhCcEEEECC-----ccHHHHHHHcCCCEEEcCCCccchhhhhcC-----ceEEcCCCHHHHHHHHHHHHh-ChH
Confidence 999999999998776 346799999999999987644333666554 677776 99999999999999 888
Q ss_pred HHHHHHHHHHHH-HhhcCHHHHHHHHHHHH
Q psy15555 449 TKTRISQNAVSS-VDRFSMEEFKNGFLTFT 477 (488)
Q Consensus 449 ~~~~~~~~a~~~-~~~~s~~~~~~~~~~~~ 477 (488)
.+++|++++..+ .+..+.+++++.+.+.+
T Consensus 345 ~~~~m~~~~~~~~g~g~aa~rI~~~l~~~~ 374 (385)
T 4hwg_A 345 NNKRTQGLVPDYNEAGLVSKKILRIVLSYV 374 (385)
T ss_dssp TTBCCSCCCHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHhhccCCCCCCCChHHHHHHHHHHHHh
Confidence 877776655544 34444455554444433
No 38
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.72 E-value=1.1e-15 Score=149.29 Aligned_cols=362 Identities=12% Similarity=0.068 Sum_probs=196.1
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeecccee--
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFV-- 130 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-- 130 (488)
|||+++... +.|....+..++++|.++ |++|.+.++.. ..+.... .. +.+..++.+...
T Consensus 5 ~~il~~~~~---~~Ghv~~~~~La~~L~~~--GheV~v~~~~~---~~~~~~~----------~G-~~~~~~~~~~~~~~ 65 (402)
T 3ia7_A 5 RHILFANVQ---GHGHVYPSLGLVSELARR--GHRITYVTTPL---FADEVKA----------AG-AEVVLYKSEFDTFH 65 (402)
T ss_dssp CEEEEECCS---SHHHHHHHHHHHHHHHHT--TCEEEEEECHH---HHHHHHH----------TT-CEEEECCCGGGTSS
T ss_pred CEEEEEeCC---CCcccccHHHHHHHHHhC--CCEEEEEcCHH---HHHHHHH----------cC-CEEEeccccccccc
Confidence 399987532 235557788999999999 56666666431 1111111 11 444444322110
Q ss_pred ------eccCchhHHH--HHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhhhhhCCCeeEEEEeCCccchHHHH--H
Q psy15555 131 ------EASLYPYFTL--LGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLT--R 200 (488)
Q Consensus 131 ------~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~--~ 200 (488)
.......+.. ..........+.+.++.++||+||..+........+....++|++.+.+....+..... .
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~ 145 (402)
T 3ia7_A 66 VPEVVKQEDAETQLHLVYVRENVAILRAAEEALGDNPPDLVVYDVFPFIAGRLLAARWDRPAVRLTGGFAANEHYSLFKE 145 (402)
T ss_dssp SSSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEESTTHHHHHHHHHHHTCCEEEEESSCCCBTTBCHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEECchHHHHHHHHHHhhCCCEEEEecccccCcccccccc
Confidence 0011111111 11112234456677888999988865222223334444679999887754432111100 0
Q ss_pred HHhhhhcccCccccccCccchhhhHHHHHHHHHH-HH--------HHhccc-CEEEEcChhHHHHHHHHhccCCceEEEc
Q psy15555 201 VARRVITHNNSQRVANNPILTSFKLFYYKVFALL-YS--------HVGKYS-DIIMVNSSWTEEHVIQLWNCQLKTYKLY 270 (488)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~-d~ii~~s~~~~~~~~~~~~~~~k~~vi~ 270 (488)
...... . ... ... ..+...+..+ .+ ...... |..++......+.....++ .++..++
T Consensus 146 ~~~~~~--~------~~~--~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~vG 212 (402)
T 3ia7_A 146 LWKSNG--Q------RHP--ADV-EAVHSVLVDLLGKYGVDTPVKEYWDEIEGLTIVFLPKSFQPFAETFD--ERFAFVG 212 (402)
T ss_dssp HHHHHT--C------CCG--GGS-HHHHHHHHHHHHTTTCCSCHHHHHTCCCSCEEESSCGGGSTTGGGCC--TTEEECC
T ss_pred cccccc--c------cCh--hhH-HHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcChHhCCccccCC--CCeEEeC
Confidence 000000 0 000 000 0011111111 10 111112 6666666555443333222 3466665
Q ss_pred CCCCchh-hhccCCCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEE-EecCCCCCcHHHHHHHHH
Q psy15555 271 PPCDTED-LKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIF-IGSTRNEEDEVCVKDMQD 348 (488)
Q Consensus 271 ~~~d~~~-~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~i-vG~~~~~~~~~~~~~l~~ 348 (488)
+...... .........+++.++++.|+....+. +.+.+.+..+ .+. +.++++ +|.++.. +.++
T Consensus 213 p~~~~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~-~~~~~~~~~~-~~~------~~~~~~~~g~~~~~------~~~~- 277 (402)
T 3ia7_A 213 PTLTGRDGQPGWQPPRPDAPVLLVSLGNQFNEHP-EFFRACAQAF-ADT------PWHVVMAIGGFLDP------AVLG- 277 (402)
T ss_dssp CCCCC----CCCCCSSTTCCEEEEECCSCSSCCH-HHHHHHHHHH-TTS------SCEEEEECCTTSCG------GGGC-
T ss_pred CCCCCcccCCCCcccCCCCCEEEEECCCCCcchH-HHHHHHHHHH-hcC------CcEEEEEeCCcCCh------hhhC-
Confidence 5443211 11111112345677888898865542 2222223323 222 355555 5554321 1121
Q ss_pred HHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCC-C----CCccceeccCCCcc
Q psy15555 349 LCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKS-G----GPKMDIVIEDPETC 423 (488)
Q Consensus 349 ~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~-~----~~~~eiv~~~~~~~ 423 (488)
.+++++.+.+++++. ++++.||++|..+ +..+++||+++|+|+|+.+. . ++. +.+.+.
T Consensus 278 -----~~~~~v~~~~~~~~~---~ll~~ad~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a-~~~~~~---- 340 (402)
T 3ia7_A 278 -----PLPPNVEAHQWIPFH---SVLAHARACLTHG----TTGAVLEAFAAGVPLVLVPHFATEAAPSA-ERVIEL---- 340 (402)
T ss_dssp -----SCCTTEEEESCCCHH---HHHTTEEEEEECC----CHHHHHHHHHTTCCEEECGGGCGGGHHHH-HHHHHT----
T ss_pred -----CCCCcEEEecCCCHH---HHHhhCCEEEECC----CHHHHHHHHHhCCCEEEeCCCcccHHHHH-HHHHHc----
Confidence 146789999999554 8999999988754 23678999999999997665 3 333 455555
Q ss_pred ccceecC----CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q psy15555 424 RNGFLAC----DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQP 479 (488)
Q Consensus 424 ~~g~~~~----~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~ 479 (488)
+.|..++ |++++++++.++++ |++.++++++.+++..+..+.+..++.+.+++..
T Consensus 341 g~g~~~~~~~~~~~~l~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 341 GLGSVLRPDQLEPASIREAVERLAA-DSAVRERVRRMQRDILSSGGPARAADEVEAYLGR 399 (402)
T ss_dssp TSEEECCGGGCSHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEccCCCCCHHHHHHHHHHHHc-CHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh
Confidence 6787765 78999999999999 9999999999888877778888888888777654
No 39
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.72 E-value=3e-15 Score=146.78 Aligned_cols=365 Identities=11% Similarity=-0.001 Sum_probs=197.9
Q ss_pred ccccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccce
Q psy15555 50 NVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKF 129 (488)
Q Consensus 50 ~~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 129 (488)
...|||+|+... +.|-..-+..++++|.++ |++|.+.++.. ..+.... .. +.+..++.+..
T Consensus 18 ~~m~rIl~~~~~---~~GHv~p~l~La~~L~~~--Gh~V~v~~~~~---~~~~~~~----------~G-~~~~~~~~~~~ 78 (415)
T 3rsc_A 18 RHMAHLLIVNVA---SHGLILPTLTVVTELVRR--GHRVSYVTAGG---FAEPVRA----------AG-ATVVPYQSEII 78 (415)
T ss_dssp -CCCEEEEECCS---CHHHHGGGHHHHHHHHHT--TCEEEEEECGG---GHHHHHH----------TT-CEEEECCCSTT
T ss_pred ccCCEEEEEeCC---CccccccHHHHHHHHHHC--CCEEEEEeCHH---HHHHHHh----------cC-CEEEecccccc
Confidence 346899987532 335557788999999999 56666666431 1222221 11 44444432111
Q ss_pred e--------eccCchhHH--HHHHHHHHHHHHHHHhhhcCCcEEEecCCccchhhhhhhhCCCeeEEEEeCCccchHHHH
Q psy15555 130 V--------EASLYPYFT--LLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLT 199 (488)
Q Consensus 130 ~--------~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~ 199 (488)
. .......+. ...........+.+.+++++||+|+..+........+....++|++.+.+..........
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~PDlVi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~ 158 (415)
T 3rsc_A 79 DADAAEVFGSDDLGVRPHLMYLRENVSVLRATAEALDGDVPDLVLYDDFPFIAGQLLAARWRRPAVRLSAAFASNEHYSF 158 (415)
T ss_dssp TCCHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHSSSCCSEEEEESTTHHHHHHHHHHTTCCEEEEESSCCCCSSCCH
T ss_pred ccccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEECchhhhHHHHHHHHhCCCEEEEEecccccCcccc
Confidence 0 011111111 111222334556678889999988754222333344445789999987765432111100
Q ss_pred --HHHhhhhcccCccccccCccchhhhHHHHHHHHHHHH----------HHhcccCEEEEcChhHHHHHHHHhccCCceE
Q psy15555 200 --RVARRVITHNNSQRVANNPILTSFKLFYYKVFALLYS----------HVGKYSDIIMVNSSWTEEHVIQLWNCQLKTY 267 (488)
Q Consensus 200 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~ 267 (488)
...... .. ... ... ..+...+..+.+ ......|..++......+.....+ +.++.
T Consensus 159 ~~~~~~~~---~~-----~~p--~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~ 225 (415)
T 3rsc_A 159 SQDMVTLA---GT-----IDP--LDL-PVFRDTLRDLLAEHGLSRSVVDCWNHVEQLNLVFVPKAFQIAGDTF--DDRFV 225 (415)
T ss_dssp HHHHHHHH---TC-----CCG--GGC-HHHHHHHHHHHHHTTCCCCHHHHHTCCCSEEEESSCTTTSTTGGGC--CTTEE
T ss_pred cccccccc---cc-----CCh--hhH-HHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcCcccCCCcccC--CCceE
Confidence 000000 00 000 000 001111111111 111112667766655444333322 23455
Q ss_pred EEcCCCCch-hhhccCCCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEE-EecCCCCCcHHHHHH
Q psy15555 268 KLYPPCDTE-DLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIF-IGSTRNEEDEVCVKD 345 (488)
Q Consensus 268 vi~~~~d~~-~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~i-vG~~~~~~~~~~~~~ 345 (488)
.+++.+... ..........+++.++++.|+.....+ + +++.+.+...+. ++++++ +|.++.. +.
T Consensus 226 ~vGp~~~~~~~~~~~~~~~~~~~~v~v~~Gs~~~~~~-~-~~~~~~~al~~~------~~~~v~~~g~~~~~------~~ 291 (415)
T 3rsc_A 226 FVGPCFDDRRFLGEWTRPADDLPVVLVSLGTTFNDRP-G-FFRDCARAFDGQ------PWHVVMTLGGQVDP------AA 291 (415)
T ss_dssp ECCCCCCCCGGGCCCCCCSSCCCEEEEECTTTSCCCH-H-HHHHHHHHHTTS------SCEEEEECTTTSCG------GG
T ss_pred EeCCCCCCcccCcCccccCCCCCEEEEECCCCCCChH-H-HHHHHHHHHhcC------CcEEEEEeCCCCCh------HH
Confidence 665543221 111111112345677888888764432 2 233332222232 367666 5554322 11
Q ss_pred HHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCC----CccceeccCCC
Q psy15555 346 MQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGG----PKMDIVIEDPE 421 (488)
Q Consensus 346 l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~----~~~eiv~~~~~ 421 (488)
++ .+++++.+.++++.. .+++.||++|..+ +..+++||+++|+|+|+.+..+ +. +.+.+.
T Consensus 292 l~------~~~~~v~~~~~~~~~---~ll~~ad~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~~q~~~a-~~l~~~-- 355 (415)
T 3rsc_A 292 LG------DLPPNVEAHRWVPHV---KVLEQATVCVTHG----GMGTLMEALYWGRPLVVVPQSFDVQPMA-RRVDQL-- 355 (415)
T ss_dssp GC------CCCTTEEEESCCCHH---HHHHHEEEEEESC----CHHHHHHHHHTTCCEEECCCSGGGHHHH-HHHHHH--
T ss_pred hc------CCCCcEEEEecCCHH---HHHhhCCEEEECC----cHHHHHHHHHhCCCEEEeCCcchHHHHH-HHHHHc--
Confidence 21 246789999999654 7899999988753 2368899999999999965532 22 344444
Q ss_pred ccccceecC----CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q psy15555 422 TCRNGFLAC----DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQP 479 (488)
Q Consensus 422 ~~~~g~~~~----~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~ 479 (488)
+.|..+. +++++++++.++++ |++.++++++.+.+..+..+.+.+++.+.+++..
T Consensus 356 --g~g~~~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 414 (415)
T 3rsc_A 356 --GLGAVLPGEKADGDTLLAAVGAVAA-DPALLARVEAMRGHVRRAGGAARAADAVEAYLAR 414 (415)
T ss_dssp --TCEEECCGGGCCHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred --CCEEEcccCCCCHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Confidence 5777764 78999999999999 9999999998888777777888888877776653
No 40
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.71 E-value=2.5e-16 Score=153.63 Aligned_cols=160 Identities=10% Similarity=0.044 Sum_probs=111.7
Q ss_pred CCCeEEEEeeccCCC-CChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCC
Q psy15555 287 DGPVKIISVAQFRPE-KDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNL 365 (488)
Q Consensus 287 ~~~~~i~~~g~~~~~-k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 365 (488)
+++.+++++|++... ++...+.+++..+.+ .+++++++++++.. +.+. +++++|.+.|++
T Consensus 231 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~-------~~~~~v~~~g~~~~------~~l~------~~~~~v~~~~~~ 291 (398)
T 3oti_A 231 ARPEVAITMGTIELQAFGIGAVEPIIAAAGE-------VDADFVLALGDLDI------SPLG------TLPRNVRAVGWT 291 (398)
T ss_dssp SSCEEEECCTTTHHHHHCGGGHHHHHHHHHT-------SSSEEEEECTTSCC------GGGC------SCCTTEEEESSC
T ss_pred CCCEEEEEcCCCccccCcHHHHHHHHHHHHc-------CCCEEEEEECCcCh------hhhc------cCCCcEEEEccC
Confidence 456788888998544 344555555555542 36788888877532 1121 346789999998
Q ss_pred ChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCC----CCCcc-ceeccCCCccccceecCCHHHHHHHHH
Q psy15555 366 PYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKS----GGPKM-DIVIEDPETCRNGFLACDEVEYAQTIK 440 (488)
Q Consensus 366 ~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~----~~~~~-eiv~~~~~~~~~g~~~~~~~~l~~~i~ 440 (488)
+ +..+++.||++|.. +++.+++|||++|+|+|+.+. .++.. +.+++. +.|+.++..+.-.+.+.
T Consensus 292 ~---~~~ll~~ad~~v~~----~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~----g~g~~~~~~~~~~~~l~ 360 (398)
T 3oti_A 292 P---LHTLLRTCTAVVHH----GGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRR----GIGLVSTSDKVDADLLR 360 (398)
T ss_dssp C---HHHHHTTCSEEEEC----CCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHH----TSEEECCGGGCCHHHHH
T ss_pred C---HHHHHhhCCEEEEC----CCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHC----CCEEeeCCCCCCHHHHH
Confidence 4 55678889999963 445689999999999999544 34420 444455 68888762222233444
Q ss_pred HHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q psy15555 441 LILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFT 477 (488)
Q Consensus 441 ~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~ 477 (488)
++++ |++.++++++.+++..+..+++.+++.+.+++
T Consensus 361 ~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 361 RLIG-DESLRTAAREVREEMVALPTPAETVRRIVERI 396 (398)
T ss_dssp HHHH-CHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHc-CHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 8888 99999999999988888889999988887664
No 41
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.66 E-value=3.1e-14 Score=138.05 Aligned_cols=156 Identities=8% Similarity=0.020 Sum_probs=113.3
Q ss_pred CCeEEEEeeccCCC-------CChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEE
Q psy15555 288 GPVKIISVAQFRPE-------KDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVE 360 (488)
Q Consensus 288 ~~~~i~~~g~~~~~-------k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~ 360 (488)
+..+++++|+.... +....+++++.. .+++++++++++ + .++++. ++++|.
T Consensus 210 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~----------~~~~~~~~~g~~-----~-~~~l~~------~~~~v~ 267 (384)
T 2p6p_A 210 RQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVR----------WDVELIVAAPDT-----V-AEALRA------EVPQAR 267 (384)
T ss_dssp SCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHT----------TTCEEEEECCHH-----H-HHHHHH------HCTTSE
T ss_pred CCEEEEECCCCCccccccccHHHHHHHHHHHhc----------CCcEEEEEeCCC-----C-HHhhCC------CCCceE
Confidence 45688999998765 455566666543 256777766542 1 133321 257899
Q ss_pred EecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCC----CccceeccCCCccccceecC----CH
Q psy15555 361 FKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGG----PKMDIVIEDPETCRNGFLAC----DE 432 (488)
Q Consensus 361 ~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~----~~~eiv~~~~~~~~~g~~~~----~~ 432 (488)
+ |+++. .++|+.||++|.. +++.+++|||++|+|+|+.+..+ +. +.+.+. +.|+.++ ++
T Consensus 268 ~-~~~~~---~~~l~~~d~~v~~----~G~~t~~Ea~~~G~P~v~~p~~~dq~~~a-~~~~~~----g~g~~~~~~~~~~ 334 (384)
T 2p6p_A 268 V-GWTPL---DVVAPTCDLLVHH----AGGVSTLTGLSAGVPQLLIPKGSVLEAPA-RRVADY----GAAIALLPGEDST 334 (384)
T ss_dssp E-ECCCH---HHHGGGCSEEEEC----SCTTHHHHHHHTTCCEEECCCSHHHHHHH-HHHHHH----TSEEECCTTCCCH
T ss_pred E-cCCCH---HHHHhhCCEEEeC----CcHHHHHHHHHhCCCEEEccCcccchHHH-HHHHHC----CCeEecCcCCCCH
Confidence 9 99864 4578999999974 44578999999999999998743 33 445554 6788765 78
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q psy15555 433 VEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQP 479 (488)
Q Consensus 433 ~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~ 479 (488)
+++++++.++++ |++.++++++.+.+....-..+.+++.+.+++..
T Consensus 335 ~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 380 (384)
T 2p6p_A 335 EAIADSCQELQA-KDTYARRAQDLSREISGMPLPATVVTALEQLAHH 380 (384)
T ss_dssp HHHHHHHHHHHH-CHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 999999999999 9999999999888777666777777777666543
No 42
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.65 E-value=2e-14 Score=142.19 Aligned_cols=269 Identities=9% Similarity=0.046 Sum_probs=175.6
Q ss_pred HHHHHhhhcCCcEEEecCCccchhhhhh-hhCCCeeEE-EEeCCccchHHHHHHHhhhhcccCccccccCccchhhhHHH
Q psy15555 150 LGVEALLSFQPDIYIDTMGYAFTYPLFS-YIGGSKVAC-YIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFY 227 (488)
Q Consensus 150 ~~~~~l~~~~pDiii~~~~~~~~~~~~~-~~~~~~~v~-~~h~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (488)
.+.+.+++.++||++...+......... ..+..|+-+ ++.+|.. .
T Consensus 340 ~ia~~Ir~d~IDILVdL~g~t~~~~i~~aa~RpAPVQvs~lGyp~T-----------------------T---------- 386 (631)
T 3q3e_A 340 FIRSVCESNGAAIFYMPSIGMDMTTIFASNTRLAPIQAIALGHPAT-----------------------T---------- 386 (631)
T ss_dssp HHHHHHHHHTCSEEEESCCSSSHHHHHHTTSCCSSEEEEECSSCSC-----------------------C----------
T ss_pred HHHHHHHhcCCCEEEECCCCCCchhHHHHhCCCchheEeccCCCcc-----------------------c----------
Confidence 3567788999999998766555443332 246677744 5555541 0
Q ss_pred HHHHHHHHHHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCC---CCchhhhccCCC--CCCC--CeEEEEeeccCC
Q psy15555 228 YKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPP---CDTEDLKKITHS--KTDG--PVKIISVAQFRP 300 (488)
Q Consensus 228 ~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~---~d~~~~~~~~~~--~~~~--~~~i~~~g~~~~ 300 (488)
-+...|.+++-..-. . -.+. ..+++..+|.. +++....+.... .+.+ .++++.+++ .
T Consensus 387 ----------Gl~~iDY~i~D~~~~-~-~~~~--ysEklirLP~~~~~~~p~~~~p~r~~~~lp~~~G~v~Fg~fn~--~ 450 (631)
T 3q3e_A 387 ----------HSDFIEYVIVEDDYV-G-SEEC--FSETLLRLPKDALPYVPSALAPEKVDYLLRENPEVVNIGIAST--T 450 (631)
T ss_dssp ----------CCTTCCEEEEEGGGC-C-CGGG--CSSEEEEECTTSSCCCCCTTCCSSCCCCCCSCCSEEEEEEEEC--S
T ss_pred ----------CcccCCEEEeCCCCC-C-cccC--ceeeEEECCCCccccCCcccCCccccccCCcCCCeEEEEECCc--c
Confidence 113357777644211 0 0111 23577777753 232222121111 1222 345555554 5
Q ss_pred CCChHHHHHHHHHhHHhhhhhccCceEEE--EEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCc
Q psy15555 301 EKDHPLQLRAMYQLRQIISEELWDNLKLI--FIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGL 378 (488)
Q Consensus 301 ~k~~~~ll~a~~~l~~~~~~~~~~~~~l~--ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad 378 (488)
.|..+.+++++.++.++. |+..+. ++|.++.. .+.+.+.+.+.|+.+++.|.|.++.+|....|+.+|
T Consensus 451 ~Ki~p~~l~~WarIL~~v-----P~s~L~l~~~g~~~g~-----~~~~~~~~~~~GI~~Rv~F~g~~p~~e~la~y~~aD 520 (631)
T 3q3e_A 451 MKLNPYFLEALKAIRDRA-----KVKVHFHFALGQSNGI-----THPYVERFIKSYLGDSATAHPHSPYHQYLRILHNCD 520 (631)
T ss_dssp TTCCHHHHHHHHHHHHHC-----SSEEEEEEEESSCCGG-----GHHHHHHHHHHHHGGGEEEECCCCHHHHHHHHHTCS
T ss_pred ccCCHHHHHHHHHHHHhC-----CCcEEEEEecCCCchh-----hHHHHHHHHHcCCCccEEEcCCCCHHHHHHHHhcCc
Confidence 799999999999999988 776654 35643211 133334455677878999999999999999999999
Q ss_pred EEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceec------cCCCccccce-ecCCHHHHHHHHHHHHccCHHHHH
Q psy15555 379 IGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVI------EDPETCRNGF-LACDEVEYAQTIKLILHLSQDTKT 451 (488)
Q Consensus 379 ~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~------~~~~~~~~g~-~~~~~~~l~~~i~~ll~~~~~~~~ 451 (488)
+++.|+.+ ++|.+.+|||++|+|||+....... +-+. -+ -..+ ++.|.+++.+...++.+ |++.+.
T Consensus 521 IfLDpfpy-~GgtTtlEALwmGVPVVTl~G~~~a-sRvgaSlL~~~G----LpE~LIA~d~eeYv~~Av~La~-D~~~l~ 593 (631)
T 3q3e_A 521 MMVNPFPF-GNTNGIIDMVTLGLVGVCKTGAEVH-EHIDEGLFKRLG----LPEWLIANTVDEYVERAVRLAE-NHQERL 593 (631)
T ss_dssp EEECCSSS-CCSHHHHHHHHTTCCEEEECCSSHH-HHHHHHHHHHTT----CCGGGEESSHHHHHHHHHHHHH-CHHHHH
T ss_pred EEEeCCcc-cCChHHHHHHHcCCCEEeccCCcHH-HHhHHHHHHhcC----CCcceecCCHHHHHHHHHHHhC-CHHHHH
Confidence 99998855 5699999999999999997654443 2221 12 3343 67799999999999999 999999
Q ss_pred HHHHHHHHHH-hhcCHHHHHHHHHHHHHHhhhhh
Q psy15555 452 RISQNAVSSV-DRFSMEEFKNGFLTFTQPLFKVM 484 (488)
Q Consensus 452 ~~~~~a~~~~-~~~s~~~~~~~~~~~~~~~~~~~ 484 (488)
+++++.++.. ...-++...+++.+.|++++.+.
T Consensus 594 ~LR~~Lr~~~~~spLFd~~~~~~e~~ye~~~~~w 627 (631)
T 3q3e_A 594 ELRRYIIENNGLNTLFTGDPRPMGQVFLEKLNAF 627 (631)
T ss_dssp HHHHHHHHSCCHHHHTCSCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhCCCcchhHHHHHHHHHHHHHHH
Confidence 9999988765 32222255666777777666544
No 43
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.56 E-value=5.8e-13 Score=131.48 Aligned_cols=156 Identities=10% Similarity=0.006 Sum_probs=112.6
Q ss_pred CCeEEEEeeccCCC-----CChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEe
Q psy15555 288 GPVKIISVAQFRPE-----KDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFK 362 (488)
Q Consensus 288 ~~~~i~~~g~~~~~-----k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~ 362 (488)
+..++++.|+.... +.+..++++++.+ +++++++++++.. ++++ +++++|.+.
T Consensus 267 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~----------~~~~v~~~g~~~~------~~l~------~~~~~v~~~ 324 (441)
T 2yjn_A 267 RRRVCLTLGISSRENSIGQVSIEELLGAVGDV----------DAEIIATFDAQQL------EGVA------NIPDNVRTV 324 (441)
T ss_dssp SCEEEEEC----------CCSTTTTHHHHHTS----------SSEEEECCCTTTT------SSCS------SCCSSEEEC
T ss_pred CCEEEEECCCCcccccChHHHHHHHHHHHHcC----------CCEEEEEECCcch------hhhc------cCCCCEEEe
Confidence 45688889988753 7777778877543 5677777665421 1111 346789999
Q ss_pred cCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCC----CccceeccCCCccccceecC----CHHH
Q psy15555 363 VNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGG----PKMDIVIEDPETCRNGFLAC----DEVE 434 (488)
Q Consensus 363 g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~----~~~eiv~~~~~~~~~g~~~~----~~~~ 434 (488)
+++++. .+|..||++|.. +++.++.||+++|+|+|+.+..+ +. +.+.+. +.|+.++ ++++
T Consensus 325 ~~~~~~---~ll~~ad~~V~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na-~~l~~~----g~g~~~~~~~~~~~~ 392 (441)
T 2yjn_A 325 GFVPMH---ALLPTCAATVHH----GGPGSWHTAAIHGVPQVILPDGWDTGVRA-QRTQEF----GAGIALPVPELTPDQ 392 (441)
T ss_dssp CSCCHH---HHGGGCSEEEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHH-HHHHHH----TSEEECCTTTCCHHH
T ss_pred cCCCHH---HHHhhCCEEEEC----CCHHHHHHHHHhCCCEEEeCCcccHHHHH-HHHHHc----CCEEEcccccCCHHH
Confidence 999764 568999999973 44578999999999999998743 32 345544 6788765 7899
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy15555 435 YAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 435 l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~ 478 (488)
++++|.++++ |++.++++++.+.+..+..+.+.+++.+.+++.
T Consensus 393 l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 393 LRESVKRVLD-DPAHRAGAARMRDDMLAEPSPAEVVGICEELAA 435 (441)
T ss_dssp HHHHHHHHHH-CHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999 999999999988877777788888877776654
No 44
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.53 E-value=8.5e-12 Score=122.48 Aligned_cols=202 Identities=9% Similarity=-0.001 Sum_probs=123.4
Q ss_pred ccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchh-hhccCCCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhh
Q psy15555 241 YSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTED-LKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIIS 319 (488)
Q Consensus 241 ~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~-~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~ 319 (488)
..+.+++.+....+.-...+ +.++..+++.+.... .........++..++++.|+.. .+..+.+.+++..+.+
T Consensus 209 ~~~~~l~~~~~~l~~~~~~~--~~~~~~vGp~~~~~~~~~~~~~~~~~~~~v~v~~Gs~~-~~~~~~~~~~~~al~~--- 282 (424)
T 2iya_A 209 APNRCIVALPRTFQIKGDTV--GDNYTFVGPTYGDRSHQGTWEGPGDGRPVLLIALGSAF-TDHLDFYRTCLSAVDG--- 282 (424)
T ss_dssp CCSSEEESSCTTTSTTGGGC--CTTEEECCCCCCCCGGGCCCCCCCSSCCEEEEECCSSS-CCCHHHHHHHHHHHTT---
T ss_pred CCCcEEEEcchhhCCCccCC--CCCEEEeCCCCCCcccCCCCCccCCCCCEEEEEcCCCC-cchHHHHHHHHHHHhc---
Confidence 45666666554332211111 235666665432111 1111111223467788888876 3333333333333322
Q ss_pred hhccCceEEE-EEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHH
Q psy15555 320 EELWDNLKLI-FIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMA 398 (488)
Q Consensus 320 ~~~~~~~~l~-ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a 398 (488)
.+++++ ++|.+... +++. .+++++.+.+++++. .+|+.||++|.. +++.+++||++
T Consensus 283 ----~~~~~~~~~g~~~~~------~~~~------~~~~~v~~~~~~~~~---~~l~~~d~~v~~----~G~~t~~Ea~~ 339 (424)
T 2iya_A 283 ----LDWHVVLSVGRFVDP------ADLG------EVPPNVEVHQWVPQL---DILTKASAFITH----AGMGSTMEALS 339 (424)
T ss_dssp ----CSSEEEEECCTTSCG------GGGC------SCCTTEEEESSCCHH---HHHTTCSEEEEC----CCHHHHHHHHH
T ss_pred ----CCcEEEEEECCcCCh------HHhc------cCCCCeEEecCCCHH---HHHhhCCEEEEC----CchhHHHHHHH
Confidence 356664 46765422 1111 246789999999654 689999998863 33478999999
Q ss_pred cCCcEEEeCCCC----CccceeccCCCccccceecC----CHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHH
Q psy15555 399 AGLIMIAHKSGG----PKMDIVIEDPETCRNGFLAC----DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFK 470 (488)
Q Consensus 399 ~G~PvI~~~~~~----~~~eiv~~~~~~~~~g~~~~----~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~ 470 (488)
+|+|+|+.+..+ +. +.+.+. +.|+.++ +.++++++|.++++ |++.++++++.+.+..+....+..+
T Consensus 340 ~G~P~i~~p~~~dQ~~na-~~l~~~----g~g~~~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (424)
T 2iya_A 340 NAVPMVAVPQIAEQTMNA-ERIVEL----GLGRHIPRDQVTAEKLREAVLAVAS-DPGVAERLAAVRQEIREAGGARAAA 413 (424)
T ss_dssp TTCCEEECCCSHHHHHHH-HHHHHT----TSEEECCGGGCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred cCCCEEEecCccchHHHH-HHHHHC----CCEEEcCcCCCCHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 999999988742 22 334444 6777765 88999999999999 9988888888777665555556666
Q ss_pred HHHHHHH
Q psy15555 471 NGFLTFT 477 (488)
Q Consensus 471 ~~~~~~~ 477 (488)
+.+++++
T Consensus 414 ~~i~~~~ 420 (424)
T 2iya_A 414 DILEGIL 420 (424)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555544
No 45
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.46 E-value=3.1e-12 Score=124.56 Aligned_cols=158 Identities=10% Similarity=0.010 Sum_probs=102.4
Q ss_pred CCCeEEEEeeccCCCCC-hHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCC
Q psy15555 287 DGPVKIISVAQFRPEKD-HPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNL 365 (488)
Q Consensus 287 ~~~~~i~~~g~~~~~k~-~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 365 (488)
++..+++..|+....++ ...+.+++..+.+ .+..+++.+.+...+ ....+++++.+.+++
T Consensus 236 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~-------~~~~~v~~~~~~~~~------------~~~~~~~~v~~~~~~ 296 (400)
T 4amg_A 236 GRRRIAVTLGSIDALSGGIAKLAPLFSEVAD-------VDAEFVLTLGGGDLA------------LLGELPANVRVVEWI 296 (400)
T ss_dssp TCCEEEECCCSCC--CCSSSTTHHHHHHGGG-------SSSEEEEECCTTCCC------------CCCCCCTTEEEECCC
T ss_pred CCcEEEEeCCcccccCccHHHHHHHHHHhhc-------cCceEEEEecCcccc------------ccccCCCCEEEEeec
Confidence 45567777888765433 3334444444432 356666666543221 112357899999999
Q ss_pred ChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCc---cceeccCCCccccceecCCHHHHHHHHHHH
Q psy15555 366 PYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPK---MDIVIEDPETCRNGFLACDEVEYAQTIKLI 442 (488)
Q Consensus 366 ~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~---~eiv~~~~~~~~~g~~~~~~~~l~~~i~~l 442 (488)
|+. .+|..+|+||. .++..++.||+++|+|+|+.+..+.. .+.+++. +.|..+++.+..+++|.++
T Consensus 297 p~~---~lL~~~~~~v~----h~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~----G~g~~l~~~~~~~~al~~l 365 (400)
T 4amg_A 297 PLG---ALLETCDAIIH----HGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGL----GIGFDAEAGSLGAEQCRRL 365 (400)
T ss_dssp CHH---HHHTTCSEEEE----CCCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHH----TSEEECCTTTCSHHHHHHH
T ss_pred CHH---HHhhhhhheec----cCCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHC----CCEEEcCCCCchHHHHHHH
Confidence 755 56789999885 34456899999999999997764421 1334444 5788887767778899999
Q ss_pred HccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q psy15555 443 LHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLT 475 (488)
Q Consensus 443 l~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~ 475 (488)
++ |++.+++.++-+.+..+.-+....++.+++
T Consensus 366 L~-d~~~r~~a~~l~~~~~~~~~~~~~a~~le~ 397 (400)
T 4amg_A 366 LD-DAGLREAALRVRQEMSEMPPPAETAAXLVA 397 (400)
T ss_dssp HH-CHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred Hc-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99 998888777766665555566666666554
No 46
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.28 E-value=1.2e-09 Score=113.32 Aligned_cols=181 Identities=12% Similarity=0.089 Sum_probs=139.4
Q ss_pred CCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCC-CcEEEecC
Q psy15555 286 TDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLE-NNVEFKVN 364 (488)
Q Consensus 286 ~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~ 364 (488)
+++.++++++.++ .|--..+++++.++.++. |+.+|++..... ...+.+++.+++.|+. ++++|.+.
T Consensus 520 p~~~v~f~~fN~~--~Ki~p~~~~~W~~IL~~v-----P~S~L~Ll~~~~-----~~~~~l~~~~~~~gi~~~r~~f~~~ 587 (723)
T 4gyw_A 520 PEDAIVYCNFNQL--YKIDPSTLQMWANILKRV-----PNSVLWLLRFPA-----VGEPNIQQYAQNMGLPQNRIIFSPV 587 (723)
T ss_dssp CTTSEEEECCSCG--GGCCHHHHHHHHHHHHHC-----SSEEEEEEETTG-----GGHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred CCCCEEEEeCCcc--ccCCHHHHHHHHHHHHhC-----CCCeEEEEeCcH-----HHHHHHHHHHHhcCCCcCeEEECCC
Confidence 3455666665554 577788999999999998 899998887653 2236788888898885 67999999
Q ss_pred CChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCc----cceeccCCCccccceecCCHHHHHHHHH
Q psy15555 365 LPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPK----MDIVIEDPETCRNGFLACDEVEYAQTIK 440 (488)
Q Consensus 365 ~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~----~eiv~~~~~~~~~g~~~~~~~~l~~~i~ 440 (488)
.+.+|....|+.+|+++-+-- -++|.+.+||+.+|+|||+-...... ..++... +-.-+++.|.++..+...
T Consensus 588 ~~~~~~l~~~~~~Di~LDt~p-~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~---gl~e~ia~~~~~Y~~~a~ 663 (723)
T 4gyw_A 588 APKEEHVRRGQLADVCLDTPL-CNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCL---GCLELIAKNRQEYEDIAV 663 (723)
T ss_dssp CCHHHHHHHGGGCSEEECCSS-SCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHH---TCGGGBCSSHHHHHHHHH
T ss_pred CCHHHHHHHhCCCeEEeCCCC-cCCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHc---CCcccccCCHHHHHHHHH
Confidence 999999999999999997643 46688999999999999996532221 1122221 012345679999999999
Q ss_pred HHHccCHHHHHHHHHHHHHHH---hhcCHHHHHHHHHHHHHHhhhh
Q psy15555 441 LILHLSQDTKTRISQNAVSSV---DRFSMEEFKNGFLTFTQPLFKV 483 (488)
Q Consensus 441 ~ll~~~~~~~~~~~~~a~~~~---~~~s~~~~~~~~~~~~~~~~~~ 483 (488)
++.+ |++.+.++.++-++.. .-|+.+.+++.+++.|+++-+.
T Consensus 664 ~la~-d~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~w~r 708 (723)
T 4gyw_A 664 KLGT-DLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEH 708 (723)
T ss_dssp HHHH-CHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHhc-CHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999998877665 3589999999999999987654
No 47
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.28 E-value=5.2e-10 Score=109.32 Aligned_cols=153 Identities=10% Similarity=-0.023 Sum_probs=101.4
Q ss_pred CCeEEEEeeccC-CCCChHHHHHHHHHhHHhhhhhccCceEEEEE-ecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCC
Q psy15555 288 GPVKIISVAQFR-PEKDHPLQLRAMYQLRQIISEELWDNLKLIFI-GSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNL 365 (488)
Q Consensus 288 ~~~~i~~~g~~~-~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~iv-G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 365 (488)
+..++++.|+.. ..+..+.++++++.+ +.+++++ |.+... . ..+++++.+.+++
T Consensus 238 ~~~v~v~~Gs~~~~~~~~~~~~~al~~~----------~~~~v~~~g~~~~~--------~------~~~~~~v~~~~~~ 293 (415)
T 1iir_A 238 PPPVYLGFGSLGAPADAVRVAIDAIRAH----------GRRVILSRGWADLV--------L------PDDGADCFAIGEV 293 (415)
T ss_dssp SCCEEEECC---CCHHHHHHHHHHHHHT----------TCCEEECTTCTTCC--------C------SSCGGGEEECSSC
T ss_pred CCeEEEeCCCCCCcHHHHHHHHHHHHHC----------CCeEEEEeCCCccc--------c------cCCCCCEEEeCcC
Confidence 356788889884 555556666666543 3455554 654311 0 1345789999999
Q ss_pred ChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCC----CccceeccCCCccccceecC----CHHHHHH
Q psy15555 366 PYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGG----PKMDIVIEDPETCRNGFLAC----DEVEYAQ 437 (488)
Q Consensus 366 ~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~----~~~eiv~~~~~~~~~g~~~~----~~~~l~~ 437 (488)
|+.+ ++..||++|.. ++..+++||+++|+|+|+.+..+ +. +.+++. +.|..++ +.+++++
T Consensus 294 ~~~~---~l~~~d~~v~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na-~~l~~~----g~g~~~~~~~~~~~~l~~ 361 (415)
T 1iir_A 294 NHQV---LFGRVAAVIHH----GGAGTTHVAARAGAPQILLPQMADQPYYA-GRVAEL----GVGVAHDGPIPTFDSLSA 361 (415)
T ss_dssp CHHH---HGGGSSEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHH-HHHHHH----TSEEECSSSSCCHHHHHH
T ss_pred ChHH---HHhhCCEEEeC----CChhHHHHHHHcCCCEEECCCCCccHHHH-HHHHHC----CCcccCCcCCCCHHHHHH
Confidence 7654 57999999974 33469999999999999987754 22 334444 6777764 7899999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhh
Q psy15555 438 TIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLFK 482 (488)
Q Consensus 438 ~i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~ 482 (488)
+|.++ + |++.++++.+.+.+. ....-.++..+.+++++.
T Consensus 362 ~i~~l-~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~ 400 (415)
T 1iir_A 362 ALATA-L-TPETHARATAVAGTI----RTDGAAVAARLLLDAVSR 400 (415)
T ss_dssp HHHHH-T-SHHHHHHHHHHHHHS----CSCHHHHHHHHHHHHHHT
T ss_pred HHHHH-c-CHHHHHHHHHHHHHH----hhcChHHHHHHHHHHHHh
Confidence 99999 8 888877776666443 334444555555665554
No 48
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.27 E-value=7.4e-11 Score=114.83 Aligned_cols=155 Identities=8% Similarity=-0.010 Sum_probs=98.8
Q ss_pred CCCeEEEEeeccC-CCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCC
Q psy15555 287 DGPVKIISVAQFR-PEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNL 365 (488)
Q Consensus 287 ~~~~~i~~~g~~~-~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 365 (488)
+++.++++.|+.. ..+....+++++..+ +.+++++++.+..+ ..+.++++.+.+++
T Consensus 220 ~~~~Vlv~~Gs~~~~~~~~~~~~~al~~~----------~~~vv~~~g~~~~~-------------~~~~~~~v~~~~~~ 276 (404)
T 3h4t_A 220 GSPPVYVGFGSGPAPAEAARVAIEAVRAQ----------GRRVVLSSGWAGLG-------------RIDEGDDCLVVGEV 276 (404)
T ss_dssp SSCCEEECCTTSCCCTTHHHHHHHHHHHT----------TCCEEEECTTTTCC-------------CSSCCTTEEEESSC
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHHHhC----------CCEEEEEeCCcccc-------------cccCCCCEEEecCC
Confidence 3456788888887 455555566665543 45667765443210 11336789999999
Q ss_pred ChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCcc---ceeccCCCccccceecC----CHHHHHHH
Q psy15555 366 PYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC----DEVEYAQT 438 (488)
Q Consensus 366 ~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~----~~~~l~~~ 438 (488)
|. ..++..||++|..+ +..++.||+++|+|+|+.+..+... +.++.. +.|...+ +.+++.++
T Consensus 277 ~~---~~ll~~~d~~v~~g----G~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~----G~g~~l~~~~~~~~~l~~a 345 (404)
T 3h4t_A 277 NH---QVLFGRVAAVVHHG----GAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADL----GVGVAHDGPTPTVESLSAA 345 (404)
T ss_dssp CH---HHHGGGSSEEEECC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHH----TSEEECSSSSCCHHHHHHH
T ss_pred CH---HHHHhhCcEEEECC----cHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHC----CCEeccCcCCCCHHHHHHH
Confidence 65 45678999999643 3368999999999999987654311 223333 5677654 78999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhh
Q psy15555 439 IKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLFK 482 (488)
Q Consensus 439 i~~ll~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~ 482 (488)
+.++++ ++.++++.+.+. .+.. .-+++..+.+++++.
T Consensus 346 i~~ll~--~~~~~~~~~~~~----~~~~-~~~~~~~~~i~~~~~ 382 (404)
T 3h4t_A 346 LATALT--PGIRARAAAVAG----TIRT-DGTTVAAKLLLEAIS 382 (404)
T ss_dssp HHHHTS--HHHHHHHHHHHT----TCCC-CHHHHHHHHHHHHHH
T ss_pred HHHHhC--HHHHHHHHHHHH----HHhh-hHHHHHHHHHHHHHh
Confidence 999985 566665555443 3322 333444444444444
No 49
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.17 E-value=5.2e-11 Score=100.92 Aligned_cols=133 Identities=13% Similarity=0.137 Sum_probs=94.1
Q ss_pred CCCeEEEEeeccC---CCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEec
Q psy15555 287 DGPVKIISVAQFR---PEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKV 363 (488)
Q Consensus 287 ~~~~~i~~~g~~~---~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g 363 (488)
++..+++++|+.. +.|....+++++.++ +.+++++++++.. + .++++|.+.+
T Consensus 20 ~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~----------~~~~~~~~g~~~~------~---------~~~~~v~~~~ 74 (170)
T 2o6l_A 20 ENGVVVFSLGSMVSNMTEERANVIASALAQI----------PQKVLWRFDGNKP------D---------TLGLNTRLYK 74 (170)
T ss_dssp TTCEEEEECCSCCTTCCHHHHHHHHHHHTTS----------SSEEEEECCSSCC------T---------TCCTTEEEES
T ss_pred CCCEEEEECCCCcccCCHHHHHHHHHHHHhC----------CCeEEEEECCcCc------c---------cCCCcEEEec
Confidence 3467888999885 445555566665432 4577777765421 1 2457899999
Q ss_pred CCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCc---cceeccCCCccccceecC----CHHHHH
Q psy15555 364 NLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPK---MDIVIEDPETCRNGFLAC----DEVEYA 436 (488)
Q Consensus 364 ~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~---~eiv~~~~~~~~~g~~~~----~~~~l~ 436 (488)
++++.++..+ +.||++|.. +++.+++|||++|+|+|+.+..+.. .+.+.+. +.|+.++ +.++++
T Consensus 75 ~~~~~~~l~~-~~ad~~I~~----~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~----g~g~~~~~~~~~~~~l~ 145 (170)
T 2o6l_A 75 WIPQNDLLGH-PKTRAFITH----GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKAR----GAAVRVDFNTMSSTDLL 145 (170)
T ss_dssp SCCHHHHHTS-TTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTT----TSEEECCTTTCCHHHHH
T ss_pred CCCHHHHhcC-CCcCEEEEc----CCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHc----CCeEEeccccCCHHHHH
Confidence 9987655443 999999973 4568999999999999999874321 1445555 6888875 789999
Q ss_pred HHHHHHHccCHHHHHHHH
Q psy15555 437 QTIKLILHLSQDTKTRIS 454 (488)
Q Consensus 437 ~~i~~ll~~~~~~~~~~~ 454 (488)
++|.++++ |++.++++.
T Consensus 146 ~~i~~ll~-~~~~~~~a~ 162 (170)
T 2o6l_A 146 NALKRVIN-DPSYKENVM 162 (170)
T ss_dssp HHHHHHHH-CHHHHHHHH
T ss_pred HHHHHHHc-CHHHHHHHH
Confidence 99999998 876544443
No 50
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.14 E-value=2.5e-09 Score=104.48 Aligned_cols=135 Identities=11% Similarity=0.028 Sum_probs=90.9
Q ss_pred CCeEEEEeeccCC---CCChHHHHHHHHHhHHhhhhhccCceEEEEE-ecCCCCCcHHHHHHHHHHHHhcCCCCcEEEec
Q psy15555 288 GPVKIISVAQFRP---EKDHPLQLRAMYQLRQIISEELWDNLKLIFI-GSTRNEEDEVCVKDMQDLCKHLSLENNVEFKV 363 (488)
Q Consensus 288 ~~~~i~~~g~~~~---~k~~~~ll~a~~~l~~~~~~~~~~~~~l~iv-G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g 363 (488)
+..++++.|+... .+....++++++.+ +.+++++ |.+.. + . ..+++++.+.+
T Consensus 237 ~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~----------~~~~v~~~g~~~~-------~-~------~~~~~~v~~~~ 292 (416)
T 1rrv_A 237 SPPVHIGFGSSSGRGIADAAKVAVEAIRAQ----------GRRVILSRGWTEL-------V-L------PDDRDDCFAID 292 (416)
T ss_dssp SCCEEECCTTCCSHHHHHHHHHHHHHHHHT----------TCCEEEECTTTTC-------C-C------SCCCTTEEEES
T ss_pred CCeEEEecCCCCccChHHHHHHHHHHHHHC----------CCeEEEEeCCccc-------c-c------cCCCCCEEEec
Confidence 3567778888742 34444555555433 3556665 65421 1 0 23467899999
Q ss_pred CCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCc---cceeccCCCccccceecC----CHHHHH
Q psy15555 364 NLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPK---MDIVIEDPETCRNGFLAC----DEVEYA 436 (488)
Q Consensus 364 ~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~---~eiv~~~~~~~~~g~~~~----~~~~l~ 436 (488)
+++.. ++|..||++|. .+++.++.||+++|+|+|+.+..+.. .+.+++. +.|..++ +.++++
T Consensus 293 ~~~~~---~ll~~~d~~v~----~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~----g~g~~~~~~~~~~~~l~ 361 (416)
T 1rrv_A 293 EVNFQ---ALFRRVAAVIH----HGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAAL----GIGVAHDGPTPTFESLS 361 (416)
T ss_dssp SCCHH---HHGGGSSEEEE----CCCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHH----TSEEECSSSCCCHHHHH
T ss_pred cCChH---HHhccCCEEEe----cCChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHC----CCccCCCCCCCCHHHHH
Confidence 99754 56799999997 34456999999999999998764321 1234444 5777653 789999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHH
Q psy15555 437 QTIKLILHLSQDTKTRISQNAVS 459 (488)
Q Consensus 437 ~~i~~ll~~~~~~~~~~~~~a~~ 459 (488)
++|.++ . |++.++++++.+++
T Consensus 362 ~~i~~l-~-~~~~~~~~~~~~~~ 382 (416)
T 1rrv_A 362 AALTTV-L-APETRARAEAVAGM 382 (416)
T ss_dssp HHHHHH-T-SHHHHHHHHHHTTT
T ss_pred HHHHHh-h-CHHHHHHHHHHHHH
Confidence 999999 8 98877777765543
No 51
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=99.02 E-value=9.7e-08 Score=96.80 Aligned_cols=238 Identities=11% Similarity=0.017 Sum_probs=161.8
Q ss_pred HHHhcccCEEEEcChhHHHHHHH------HhccCCceEEEcCCCCchhhh----cc------------------------
Q psy15555 236 SHVGKYSDIIMVNSSWTEEHVIQ------LWNCQLKTYKLYPPCDTEDLK----KI------------------------ 281 (488)
Q Consensus 236 ~~~~~~~d~ii~~s~~~~~~~~~------~~~~~~k~~vi~~~~d~~~~~----~~------------------------ 281 (488)
...+..++.|-.+|+...+.+++ .-..+.++.-+-||+++..+. |.
T Consensus 408 ~lai~~S~~VNgVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~w~~d~~~l~~l~ 487 (796)
T 1l5w_A 408 NLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLE 487 (796)
T ss_dssp HHHHHHSSEEEESSHHHHHHHHHTTSHHHHHHCGGGEEECCCCBCHHHHTTTTCHHHHHHHHHHCSSCCTTCGGGGGGGG
T ss_pred HHHHHhcCccccccHHHHHHHHhHHhhHHHHhCccccCCCcCCCcHHHhhcccCHhHHHHHHHhcCcccccCHHHHHHHH
Confidence 34567789999999999988864 112345788889999765441 10
Q ss_pred ---CC----------------------------CCCCCCeEEEEeeccCCCCChHH-HHHHHHHhHHhhhh--hccCceE
Q psy15555 282 ---TH----------------------------SKTDGPVKIISVAQFRPEKDHPL-QLRAMYQLRQIISE--ELWDNLK 327 (488)
Q Consensus 282 ---~~----------------------------~~~~~~~~i~~~g~~~~~k~~~~-ll~a~~~l~~~~~~--~~~~~~~ 327 (488)
.. ...++.+.++++.|+...|+.++ ++..+.++.+-..+ ....+++
T Consensus 488 ~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q 567 (796)
T 1l5w_A 488 KFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRV 567 (796)
T ss_dssp GGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEE
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeE
Confidence 00 02356789999999999999999 78887777642111 0113689
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHhc--------CCCC--cEEEecCCChHHHHHHHHhCcEEEEcCC--CCcCCccHHH
Q psy15555 328 LIFIGSTRNEEDEVCVKDMQDLCKHL--------SLEN--NVEFKVNLPYEDMKKEFSEGLIGLHAMW--NEHFGIGIVE 395 (488)
Q Consensus 328 l~ivG~~~~~~~~~~~~~l~~~~~~~--------~l~~--~v~~~g~~~~~el~~~~~~ad~~v~~s~--~e~~g~~~lE 395 (488)
+++.|.+.... +..+.+-+++.+. .+++ +|.|+...+..--..++.+||+++.+|. .|..|.+-+=
T Consensus 568 ~If~GKA~P~y--~~aK~iIk~i~~va~~in~Dp~~~~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MK 645 (796)
T 1l5w_A 568 FLFGAKAAPGY--YLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMK 645 (796)
T ss_dssp EEEECCCCTTC--HHHHHHHHHHHHHHHHHHTCTTTGGGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHH
T ss_pred EEEEecCChhH--HHHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHH
Confidence 99999774332 2223333333222 3455 7999888777888889999999999998 9999999999
Q ss_pred HHHcCCcEEEeCCCCCccceeccCCCccccceecC-CHHHHHHHHHH------HHccCHHHHHHHHHHHHHHHhhcCHHH
Q psy15555 396 CMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKL------ILHLSQDTKTRISQNAVSSVDRFSMEE 468 (488)
Q Consensus 396 a~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~------ll~~~~~~~~~~~~~a~~~~~~~s~~~ 468 (488)
+|..|.+.|++-.|.+. |+.+.- ..++|+++. +++++.+.-.. +...++ ..+++-+++.. ..|||+.
T Consensus 646 am~NGaL~iGtLDGanv-Ei~e~v--G~~NgF~FG~~~~ev~~l~~~~y~a~~~y~~~~-~~~~vvd~~~~--g~fs~~~ 719 (796)
T 1l5w_A 646 LALNGALTVGTLDGANV-EIAEKV--GEENIFIFGHTVEQVKAILAKGYDPVKWRKKDK-VLDAVLKELES--GKYSDGD 719 (796)
T ss_dssp HHHTTCEEEECSCTTHH-HHHHHH--CGGGSEECSCCHHHHHHHHHHCCCHHHHHHHCH-HHHHHHHHHHH--TTTTTTC
T ss_pred HHHcCCeeecCcCCeee-ehhhcc--CCCcEEEecCCHHHHHHHHHcccCHHHHhhcCH-HHHHHHHHHHc--CCCCCCc
Confidence 99999999988777775 776441 226899987 77776633222 222144 33333333332 7899877
Q ss_pred HHHHHHHHHHHhhh
Q psy15555 469 FKNGFLTFTQPLFK 482 (488)
Q Consensus 469 ~~~~~~~~~~~~~~ 482 (488)
- +++.++|++++.
T Consensus 720 ~-~~y~~Ly~~L~~ 732 (796)
T 1l5w_A 720 K-HAFDQMLHSIGK 732 (796)
T ss_dssp T-TTTHHHHHHTST
T ss_pred H-HHHHHHHHHHhc
Confidence 4 678888888754
No 52
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=98.92 E-value=1.3e-07 Score=95.79 Aligned_cols=238 Identities=11% Similarity=0.006 Sum_probs=157.5
Q ss_pred HHHhcccCEEEEcChhHHHHHHH-Hh-----ccCCceEEEcCCCCchhh----hcc------------------------
Q psy15555 236 SHVGKYSDIIMVNSSWTEEHVIQ-LW-----NCQLKTYKLYPPCDTEDL----KKI------------------------ 281 (488)
Q Consensus 236 ~~~~~~~d~ii~~s~~~~~~~~~-~~-----~~~~k~~vi~~~~d~~~~----~~~------------------------ 281 (488)
...+..++.|-.+|+...+.+++ .+ ..+.++.-+-||+++..+ .|.
T Consensus 397 ~lai~~S~~VNgVS~lHae~ik~~~f~~~~~~~p~kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l~~l 476 (796)
T 2c4m_A 397 WIACYAAYSINGVAALHTEIIKAETLADWYALWPEKFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDELKKL 476 (796)
T ss_dssp HHHHHHCSEEEESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGGGGG
T ss_pred HHHHHhcCceeeccHHHHHHhhhhhhhhHHHcCccccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHHHHHH
Confidence 34567789999999999988874 11 124578888899876544 110
Q ss_pred ----CC----------------------------CCCCCCeEEEEeeccCCCCChHH-HHHHHHHhHH--hhhhhccCce
Q psy15555 282 ----TH----------------------------SKTDGPVKIISVAQFRPEKDHPL-QLRAMYQLRQ--IISEELWDNL 326 (488)
Q Consensus 282 ----~~----------------------------~~~~~~~~i~~~g~~~~~k~~~~-ll~a~~~l~~--~~~~~~~~~~ 326 (488)
.. ...++.+.++++.|+...|+.++ ++..+.++.+ +.++....++
T Consensus 477 ~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~ 556 (796)
T 2c4m_A 477 RSYADDKSVLEELRAIKAANKQDFAEWILERQGIEIDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPAR 556 (796)
T ss_dssp GGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCE
T ss_pred HhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCe
Confidence 00 02346789999999999999999 7888777764 2110011268
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhc--------CCCC--cEEEecCCChHHHHHHHHhCcEEEEcCC--CCcCCccHH
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHL--------SLEN--NVEFKVNLPYEDMKKEFSEGLIGLHAMW--NEHFGIGIV 394 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~--------~l~~--~v~~~g~~~~~el~~~~~~ad~~v~~s~--~e~~g~~~l 394 (488)
++++.|.+.... +..+.+-+++... .+++ +|.|+...+..--..++.+||+++.+|. .|..|.+-+
T Consensus 557 q~If~GKA~P~y--~~aK~iIk~i~~va~~in~dp~~~~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~M 634 (796)
T 2c4m_A 557 TVIFGAKAAPGY--VRAKAIIKLINSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNM 634 (796)
T ss_dssp EEEEECCCCTTC--HHHHHHHHHHHHHHHHHHTCTTTTTTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHH
T ss_pred EEEEEecCCHhH--HHHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHH
Confidence 999999774332 2223333333222 3456 7999888777888889999999999998 999999999
Q ss_pred HHHHcCCcEEEeCCCCCccceeccCCCccccceecC-CHHHHHHHHHH-----HHccCHHHHHHHHHHHHHHHhhcCHHH
Q psy15555 395 ECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKL-----ILHLSQDTKTRISQNAVSSVDRFSMEE 468 (488)
Q Consensus 395 Ea~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~-----ll~~~~~~~~~~~~~a~~~~~~~s~~~ 468 (488)
=+|..|.+.|++-.|.+. |+.+.- +.++|+++. +.++..+.... +...++ ..+++-+++.. ..|||+.
T Consensus 635 Kam~NGaL~iGtLDGanv-Ei~e~v--G~~NgF~FG~~~~ev~~l~~~y~a~~~y~~~~-~~~~vvd~~~~--g~fs~~~ 708 (796)
T 2c4m_A 635 KFMMNGALTLGTMDGANV-EIVDSV--GEENAYIFGARVEELPALRESYKPYELYETVP-GLKRALDALDN--GTLNDNN 708 (796)
T ss_dssp HHHHTTCEEEEESSTHHH-HHHHHH--CGGGSEEESCCTTTHHHHHHTCCHHHHHHHST-THHHHHHTTTS--SSSCCTT
T ss_pred HHHHcCCeEEeccCCeEe-ehhhhc--CCCcEEEecCchhhHHHHHHhhChHHHhhcCH-HHHHHHHHHHc--CCCCCCC
Confidence 999999999988777775 765441 226899986 33433332222 111133 12222222211 7788876
Q ss_pred HHHHHHHHHHHhhh
Q psy15555 469 FKNGFLTFTQPLFK 482 (488)
Q Consensus 469 ~~~~~~~~~~~~~~ 482 (488)
- +++.+++++++.
T Consensus 709 ~-~~y~~Ly~~L~~ 721 (796)
T 2c4m_A 709 S-GLFYDLKHSLIH 721 (796)
T ss_dssp C-CHHHHHHHHHHS
T ss_pred H-HHHHHHHHHHHh
Confidence 5 678888888764
No 53
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=98.75 E-value=1.5e-07 Score=85.42 Aligned_cols=142 Identities=13% Similarity=0.003 Sum_probs=84.7
Q ss_pred ccCEEEEcChhHH-HHHHHHhccCCceEEEcC---CCCchhhhccCCCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHH
Q psy15555 241 YSDIIMVNSSWTE-EHVIQLWNCQLKTYKLYP---PCDTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQ 316 (488)
Q Consensus 241 ~~d~ii~~s~~~~-~~~~~~~~~~~k~~vi~~---~~d~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~ 316 (488)
.+|.++-++.... ..+....+ +......++ ++..+............+.+++++|..++..-...++ +.+.+
T Consensus 107 ~~Dllin~~~~~~~~~Y~~~~p-~~~~~l~G~~Y~~lR~eF~~~~~~~r~~~~~ILv~~GG~d~~~l~~~vl---~~L~~ 182 (282)
T 3hbm_A 107 HCDILLNVNAYAKASDYEGLVP-FKCEVRCGFSYALIREEFYQEAKENRKKKYDFFICMGGTDIKNLSLQIA---SELPK 182 (282)
T ss_dssp CCSEEEECSTTCCGGGGTTTCC--CCEEEESGGGCCCCHHHHHHTTCCCCCCEEEEEECCSCCTTCHHHHHH---HHSCT
T ss_pred cCCEEEeCCcccchhhccccCC-CCCeEeeCCcccccCHHHHHhhhhccccCCeEEEEECCCchhhHHHHHH---HHhhc
Confidence 4799998875432 11221111 112235555 4554443322221112345667788765443233333 33332
Q ss_pred hhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHH
Q psy15555 317 IISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVEC 396 (488)
Q Consensus 317 ~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa 396 (488)
. .+ ..++.|.+. ...+++++.+++. .++.+.+++ +++.++|+.||+.|.. +|.++.|+
T Consensus 183 ~------~~-i~vv~G~~~-----~~~~~l~~~~~~~---~~v~v~~~~--~~m~~~m~~aDlvI~~-----gG~T~~E~ 240 (282)
T 3hbm_A 183 T------KI-ISIATSSSN-----PNLKKLQKFAKLH---NNIRLFIDH--ENIAKLMNESNKLIIS-----ASSLVNEA 240 (282)
T ss_dssp T------SC-EEEEECTTC-----TTHHHHHHHHHTC---SSEEEEESC--SCHHHHHHTEEEEEEE-----SSHHHHHH
T ss_pred C------CC-EEEEECCCc-----hHHHHHHHHHhhC---CCEEEEeCH--HHHHHHHHHCCEEEEC-----CcHHHHHH
Confidence 1 23 345667664 2347777766543 379999999 8999999999998873 35799999
Q ss_pred HHcCCcEEEeCC
Q psy15555 397 MAAGLIMIAHKS 408 (488)
Q Consensus 397 ~a~G~PvI~~~~ 408 (488)
+++|+|.|..+.
T Consensus 241 ~~~g~P~i~ip~ 252 (282)
T 3hbm_A 241 LLLKANFKAICY 252 (282)
T ss_dssp HHTTCCEEEECC
T ss_pred HHcCCCEEEEeC
Confidence 999999999765
No 54
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=98.65 E-value=0.00026 Score=69.65 Aligned_cols=356 Identities=11% Similarity=-0.011 Sum_probs=169.1
Q ss_pred ccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCC--hhHHHHHhhhhcccccCCCeeEEEEeeccce
Q psy15555 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDAS--PSEIIKRAHQRFNIVLPDQVINFVYLYRRKF 129 (488)
Q Consensus 52 ~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 129 (488)
+++|+++. + ...|--.-+..+++.|.++.||++|.++++..... .......... .... +.+..++....
T Consensus 9 ~~~vv~~p-~--p~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~~~~~~~~~~~~~~~~-----~~~~-i~~~~lp~~~~ 79 (463)
T 2acv_A 9 NSELIFIP-A--PGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLA-----SQPQ-IQLIDLPEVEP 79 (463)
T ss_dssp CEEEEEEC-C--SSTTTHHHHHHHHHHHHHTCTTEEEEEEECCCTTCCCCHHHHHHHHC-----SCTT-EEEEECCCCCC
T ss_pred CCEEEEEc-C--cccchHHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhhhhhhccc-----CCCC-ceEEECCCCCC
Confidence 36888763 2 23356678899999999986678888887764321 1222222100 1123 66666654321
Q ss_pred eec---cCchhHHHHHHHH-HHHHHHHHHhhh---cCCcEEEecCCccchhhhhhhhCCCeeEEEEeCCccchHHHHHHH
Q psy15555 130 VEA---SLYPYFTLLGQSI-GSMILGVEALLS---FQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVA 202 (488)
Q Consensus 130 ~~~---~~~~~~~~~~~~~-~~~~~~~~~l~~---~~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~ 202 (488)
... ...... +...+ .....+.++++. .+||+||.....+....++. ..++|.+.+.-.+........+..
T Consensus 80 ~~~~~~~~~~~~--~~~~~~~~~~~~~~ll~~~~~~~~d~vI~D~~~~~~~~vA~-~lgiP~v~~~~~~~~~~~~~~~~~ 156 (463)
T 2acv_A 80 PPQELLKSPEFY--ILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDVGN-EFGIPSYLFLTSNVGFLSLMLSLK 156 (463)
T ss_dssp CCGGGGGSHHHH--HHHHHHHTHHHHHHHHHHHCCTTEEEEEEEGGGGGGHHHHH-HTTCCEEEEESSCHHHHHHHHHGG
T ss_pred CcccccCCccHH--HHHHHHhhhHHHHHHHHhccCCCCeEEEECCcchhHHHHHH-HcCCCEEEEeCchHHHHHHHHHHH
Confidence 110 001111 11111 112234555655 68997775443333444444 678997775543321111110111
Q ss_pred hhh--hcccC-c------ccccc-Cccch-----hhh--HHHHHHHHHHHHHHhcccCEEEEcChhHHH-HHHHHhcc--
Q psy15555 203 RRV--ITHNN-S------QRVAN-NPILT-----SFK--LFYYKVFALLYSHVGKYSDIIMVNSSWTEE-HVIQLWNC-- 262 (488)
Q Consensus 203 ~~~--~~~~~-~------~~~~~-~~~~~-----~~~--~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~-~~~~~~~~-- 262 (488)
... ..+.. . ..... +.... ... ...+..+.... ..++.++.+++.|-...+ .....+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~nt~~ele~~~~~~l~~~~ 235 (463)
T 2acv_A 157 NRQIEEVFDDSDRDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLA-ERFRDTKGIIVNTFSDLEQSSIDALYDHD 235 (463)
T ss_dssp GSCTTCCCCCSSGGGCEECCTTCSSCEEGGGSCHHHHCTTTHHHHHHHHH-HHHTTSSEEEESCCHHHHHHHHHHHHHHC
T ss_pred hhcccCCCCCccccCceeECCCCCCCCChHHCchhhcCCchHHHHHHHHH-HhcccCCEEEECCHHHHhHHHHHHHHhcc
Confidence 000 00000 0 00000 00000 000 00111111111 234678888877644333 22222211
Q ss_pred --CCceEEEcCCCCchh-h--h---cc-------CCCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceE
Q psy15555 263 --QLKTYKLYPPCDTED-L--K---KI-------THSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLK 327 (488)
Q Consensus 263 --~~k~~vi~~~~d~~~-~--~---~~-------~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~ 327 (488)
..++..+++...... . . .. -....++..+++..|+....-+.+.+.+.+..+.+. +.+
T Consensus 236 ~p~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~-------~~~ 308 (463)
T 2acv_A 236 EKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHS-------GVR 308 (463)
T ss_dssp TTSCCEEECCCCCCSSCCCBTTBCHHHHHHHHHHHHTSCTTCEEEEECCSSCCCCCHHHHHHHHHHHHHH-------TCE
T ss_pred ccCCcEEEeCCCcccccccccccccccchhHHHHHhcCCCCceEEEEeccccccCCHHHHHHHHHHHHhC-------CCc
Confidence 235777765432110 0 0 00 011223456777778776222334444444444332 456
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHH--hCcEEEEcCCCCcCCccHHHHHHcCCcEEE
Q psy15555 328 LIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS--EGLIGLHAMWNEHFGIGIVECMAAGLIMIA 405 (488)
Q Consensus 328 l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~--~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~ 405 (488)
++++-+.... ...+.+.+.... ++++...+++|+. .+|+ .+|+||. -++..+++|++++|+|+|+
T Consensus 309 ~l~~~~~~~~---~l~~~~~~~~~~---~~~~~v~~w~pq~---~vL~h~~~~~fvt----h~G~~s~~Eal~~GvP~i~ 375 (463)
T 2acv_A 309 FLWSNSAEKK---VFPEGFLEWMEL---EGKGMICGWAPQV---EVLAHKAIGGFVS----HCGWNSILESMWFGVPILT 375 (463)
T ss_dssp EEEECCCCGG---GSCTTHHHHHHH---HCSEEEESSCCHH---HHHHSTTEEEEEE----CCCHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCcc---cCChhHHHhhcc---CCCEEEEccCCHH---HHhCCCccCeEEe----cCCchhHHHHHHcCCCeee
Confidence 6655432100 000122222210 2468888999764 4576 5777775 3445789999999999999
Q ss_pred eCCCCCcc---ce-eccCCCccccceec---------C-CHHHHHHHHHHHHc
Q psy15555 406 HKSGGPKM---DI-VIEDPETCRNGFLA---------C-DEVEYAQTIKLILH 444 (488)
Q Consensus 406 ~~~~~~~~---ei-v~~~~~~~~~g~~~---------~-~~~~l~~~i~~ll~ 444 (488)
-+..+... .. ++.. +.|+.+ . +.+++.++|.++++
T Consensus 376 ~P~~~dQ~~Na~~lv~~~----g~g~~l~~~~~~~~~~~~~~~l~~ai~~ll~ 424 (463)
T 2acv_A 376 WPIYAEQQLNAFRLVKEW----GVGLGLRVDYRKGSDVVAAEEIEKGLKDLMD 424 (463)
T ss_dssp CCCSTTHHHHHHHHHHTS----CCEEESCSSCCTTCCCCCHHHHHHHHHHHTC
T ss_pred ccchhhhHHHHHHHHHHc----CeEEEEecccCCCCccccHHHHHHHHHHHHh
Confidence 87743210 23 3444 577766 2 67899999999996
No 55
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=98.62 E-value=3.8e-05 Score=75.41 Aligned_cols=192 Identities=10% Similarity=-0.024 Sum_probs=106.1
Q ss_pred HhcccCEEEEcChhHHHH-----HHHHhccCCceEEEcCCCCchh---hh------ccCCCCCCCCeEEEEeeccCCCCC
Q psy15555 238 VGKYSDIIMVNSSWTEEH-----VIQLWNCQLKTYKLYPPCDTED---LK------KITHSKTDGPVKIISVAQFRPEKD 303 (488)
Q Consensus 238 ~~~~~d~ii~~s~~~~~~-----~~~~~~~~~k~~vi~~~~d~~~---~~------~~~~~~~~~~~~i~~~g~~~~~k~ 303 (488)
..+.++.++++|-...+. +.... .++..+++...... .. ..-....++..+++..|+.... .
T Consensus 210 ~~~~~~~vl~ns~~~le~~~~~~~~~~~---~~~~~vGpl~~~~~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~-~ 285 (456)
T 2c1x_A 210 VLPKATAVFINSFEELDDSLTNDLKSKL---KTYLNIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTP-P 285 (456)
T ss_dssp HGGGSSCEEESSCGGGCHHHHHHHHHHS---SCEEECCCHHHHC---------CHHHHHHTSCTTCEEEEECCSSCCC-C
T ss_pred hhhhCCEEEECChHHHhHHHHHHHHhcC---CCEEEecCcccCcccccccchhhHHHHHhcCCCcceEEEecCccccC-C
Confidence 346789999998654433 23322 24666654211000 00 0001122345677777876643 3
Q ss_pred hHHHHHHHHHhHHhhhhhccCceEEEEE-ecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHH--hCcEE
Q psy15555 304 HPLQLRAMYQLRQIISEELWDNLKLIFI-GSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS--EGLIG 380 (488)
Q Consensus 304 ~~~ll~a~~~l~~~~~~~~~~~~~l~iv-G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~--~ad~~ 380 (488)
.+.+.+.+..+.+. +.+++++ |..... ...+.+.+.. ++++.+.+++|+. .+++ .+|+|
T Consensus 286 ~~~~~~~~~~l~~~-------~~~~lw~~~~~~~~---~l~~~~~~~~-----~~~~~v~~w~pq~---~vL~h~~~~~f 347 (456)
T 2c1x_A 286 PAEVVALSEALEAS-------RVPFIWSLRDKARV---HLPEGFLEKT-----RGYGMVVPWAPQA---EVLAHEAVGAF 347 (456)
T ss_dssp HHHHHHHHHHHHHH-------TCCEEEECCGGGGG---GSCTTHHHHH-----TTTEEEESCCCHH---HHHTSTTEEEE
T ss_pred HHHHHHHHHHHHhc-------CCeEEEEECCcchh---hCCHHHHhhc-----CCceEEecCCCHH---HHhcCCcCCEE
Confidence 34444444444332 3455543 432100 0001122211 3578899999764 5688 66777
Q ss_pred EEcCCCCcCCccHHHHHHcCCcEEEeCCCCCc----cceeccCCCccccceecC----CHHHHHHHHHHHHccCHHHHHH
Q psy15555 381 LHAMWNEHFGIGIVECMAAGLIMIAHKSGGPK----MDIVIEDPETCRNGFLAC----DEVEYAQTIKLILHLSQDTKTR 452 (488)
Q Consensus 381 v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~----~eiv~~~~~~~~~g~~~~----~~~~l~~~i~~ll~~~~~~~~~ 452 (488)
|. -++..+++|++++|+|+|+-+..+.. ..+.+.. +.|..++ +.+++.+++.++++ +++ .++
T Consensus 348 vt----h~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~----g~g~~l~~~~~~~~~l~~~i~~ll~-~~~-~~~ 417 (456)
T 2c1x_A 348 VT----HCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVL----EIGVRIEGGVFTKSGLMSCFDQILS-QEK-GKK 417 (456)
T ss_dssp EE----CCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTS----CCEEECGGGSCCHHHHHHHHHHHHH-SHH-HHH
T ss_pred Ee----cCCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHh----CeEEEecCCCcCHHHHHHHHHHHHC-CCc-HHH
Confidence 75 34457899999999999998764321 1122221 4566554 78999999999998 775 455
Q ss_pred HHHHHHHHH
Q psy15555 453 ISQNAVSSV 461 (488)
Q Consensus 453 ~~~~a~~~~ 461 (488)
+.+++++..
T Consensus 418 ~r~~a~~l~ 426 (456)
T 2c1x_A 418 LRENLRALR 426 (456)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655543
No 56
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=98.56 E-value=2.8e-06 Score=86.56 Aligned_cols=194 Identities=12% Similarity=0.040 Sum_probs=133.8
Q ss_pred HHhcccCEEEEcChhHHHHHHH-Hhc-----cCCceEEEcCCCCchhh----hc--------------------------
Q psy15555 237 HVGKYSDIIMVNSSWTEEHVIQ-LWN-----CQLKTYKLYPPCDTEDL----KK-------------------------- 280 (488)
Q Consensus 237 ~~~~~~d~ii~~s~~~~~~~~~-~~~-----~~~k~~vi~~~~d~~~~----~~-------------------------- 280 (488)
..+..++.|-.+|+...+.+++ .++ .+.++.-+-||+++..+ .|
T Consensus 433 lai~~S~~VNgVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~lI~~~ig~~W~~~~~~l~~L~~ 512 (824)
T 2gj4_A 433 LCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLRKLLS 512 (824)
T ss_dssp HHHHTCSCEEESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCCTCHHHHHHHHHHHCSGGGGCGGGGGGGGG
T ss_pred HHHHhcCceeeEcHHHHHHHhhHHhHHHHHcChhhcccccCCcChhhhcccCCHhHHHHHHHhcCchhhhCHHHHHHHHh
Confidence 4667889999999998888863 111 24578888898865433 00
Q ss_pred ------c-----C------C------------CCCCCCeEEEEeeccCCCCChHHH-HHHHHHhHH--hhhhhccCceEE
Q psy15555 281 ------I-----T------H------------SKTDGPVKIISVAQFRPEKDHPLQ-LRAMYQLRQ--IISEELWDNLKL 328 (488)
Q Consensus 281 ------~-----~------~------------~~~~~~~~i~~~g~~~~~k~~~~l-l~a~~~l~~--~~~~~~~~~~~l 328 (488)
. . . ...++.+.++++.|+...|+.+++ +..+.++.+ +.++....+.++
T Consensus 513 y~~d~~~~~~~~~~K~~nK~~la~~l~~~~Gl~vdpd~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~ 592 (824)
T 2gj4_A 513 YVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTV 592 (824)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEE
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEE
Confidence 0 0 0 023567899999999999999987 777777752 221101116799
Q ss_pred EEEecCCCCCcHHHHHH----HHHHHHhc----CCCC--cEEEecCCChHHHHHHHHhCcEEEEcCC--CCcCCccHHHH
Q psy15555 329 IFIGSTRNEEDEVCVKD----MQDLCKHL----SLEN--NVEFKVNLPYEDMKKEFSEGLIGLHAMW--NEHFGIGIVEC 396 (488)
Q Consensus 329 ~ivG~~~~~~~~~~~~~----l~~~~~~~----~l~~--~v~~~g~~~~~el~~~~~~ad~~v~~s~--~e~~g~~~lEa 396 (488)
++.|.+.... +..+. +.+.++.. .+++ +|.|+...+..--..++..||+++.+|. .|..|.+-+=+
T Consensus 593 If~GKA~P~y--~~aK~iIkli~~va~~in~Dp~v~~~lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKa 670 (824)
T 2gj4_A 593 MIGGKAAPGY--HMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKF 670 (824)
T ss_dssp EEECCCCTTC--HHHHHHHHHHHHHHHHHTTCTTTGGGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHH
T ss_pred EEEEeCCHhH--HHHHHHHHHHHHHHHHhccCcccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHH
Confidence 9999774332 22233 33333322 1245 6888888777888889999999999998 99999999999
Q ss_pred HHcCCcEEEeCCCCCccceeccCCCccccceecC-CHHHH
Q psy15555 397 MAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEY 435 (488)
Q Consensus 397 ~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l 435 (488)
|..|.+.|++-.|.+. |+.++- +.++||++. .++++
T Consensus 671 mlNGaLtigtlDGanv-Ei~e~v--G~~Ngf~FG~~~~ev 707 (824)
T 2gj4_A 671 MLNGALTIGTMDGANV-EMAEEA--GEENFFIFGMRVEDV 707 (824)
T ss_dssp HHTTCEEEECSCTTHH-HHHHHH--CGGGSEECSCCHHHH
T ss_pred HHcCceEEEEecCccc-hhhhcc--CCCCEEEeCCcHHHH
Confidence 9999999998877775 665420 126889887 55555
No 57
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=98.52 E-value=0.00083 Score=65.42 Aligned_cols=367 Identities=11% Similarity=0.003 Sum_probs=173.8
Q ss_pred ccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeecccee-
Q psy15555 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFV- 130 (488)
Q Consensus 52 ~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~- 130 (488)
+.+|+++- + ...|--.-+.+|++.|.++|+.+.|.++++... ......... .-... +.+..++....-
T Consensus 13 ~~hvv~~P-~--p~~GHi~P~l~Lak~L~~~g~~~~vT~~~t~~~------~~~~~~~~~-~~~~~-i~~~~ipdglp~~ 81 (454)
T 3hbf_A 13 LLHVAVLA-F--PFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTT------NDTLFSRSN-EFLPN-IKYYNVHDGLPKG 81 (454)
T ss_dssp CCEEEEEC-C--CSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHH------HHHSCSSSS-CCCTT-EEEEECCCCCCTT
T ss_pred CCEEEEEc-C--CcccHHHHHHHHHHHHHhCCCCEEEEEEeCHHH------HHhhhcccc-cCCCC-ceEEecCCCCCCC
Confidence 46777753 2 223566788999999999976688887775311 111100000 00123 666666532110
Q ss_pred -ec--cCchhHHHHHH-HHHHHHH-HHHHhhh--cCCcEEEecCCccchhhhhhhhCCCeeEEEEeCCccchHHHHHHH-
Q psy15555 131 -EA--SLYPYFTLLGQ-SIGSMIL-GVEALLS--FQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVA- 202 (488)
Q Consensus 131 -~~--~~~~~~~~~~~-~~~~~~~-~~~~l~~--~~pDiii~~~~~~~~~~~~~~~~~~~~v~~~h~p~~~~d~~~~~~- 202 (488)
.. .....+..+.. ....+.. +.+++.. .+||.||.....+....+++ ..|+|.+.+.-.+...........
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iI~D~~~~w~~~vA~-~lgIP~~~f~t~~a~~~~~~~~~~~ 160 (454)
T 3hbf_A 82 YVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAE-EMHAKWVPLWTAGPHSLLTHVYTDL 160 (454)
T ss_dssp CCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEETTCTTHHHHHH-HTTCEEEEEECSCHHHHHHHHTHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEECCcchHHHHHHH-HhCCCEEEEeCccHHHHHHHHhhHH
Confidence 00 00111111111 1111111 1222222 36887765544454555555 779998876644332111111000
Q ss_pred --hh-h--hcccCccc--------cccCccchh----hhHHHHHHHHHHHHHHhcccCEEEEcChhHHHH--HHHHhccC
Q psy15555 203 --RR-V--ITHNNSQR--------VANNPILTS----FKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEH--VIQLWNCQ 263 (488)
Q Consensus 203 --~~-~--~~~~~~~~--------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~--~~~~~~~~ 263 (488)
.. . ........ +....+.+. ........+.... .....++.++++|-...+. +.......
T Consensus 161 ~~~~~~~~~~~~~~~~~~iPg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~-~~~~~~~~vl~ns~~eLE~~~~~~~~~~~ 239 (454)
T 3hbf_A 161 IREKTGSKEVHDVKSIDVLPGFPELKASDLPEGVIKDIDVPFATMLHKMG-LELPRANAVAINSFATIHPLIENELNSKF 239 (454)
T ss_dssp HHHTCCHHHHTTSSCBCCSTTSCCBCGGGSCTTSSSCTTSHHHHHHHHHH-HHGGGSSCEEESSCGGGCHHHHHHHHTTS
T ss_pred HHhhcCCCccccccccccCCCCCCcChhhCchhhccCCchHHHHHHHHHH-HhhccCCEEEECChhHhCHHHHHHHHhcC
Confidence 00 0 00000000 001111111 0111222222222 2456789999998655332 11111112
Q ss_pred CceEEEcCCCCch--h-------hhccCCCCCCCCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecC
Q psy15555 264 LKTYKLYPPCDTE--D-------LKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGST 334 (488)
Q Consensus 264 ~k~~vi~~~~d~~--~-------~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~ 334 (488)
.++..+++-.... . ....-....++..+++..|+.... ..+.+.+.+..+.+. +.+++++-+.
T Consensus 240 ~~v~~vGPl~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsfGS~~~~-~~~~~~el~~~l~~~-------~~~flw~~~~ 311 (454)
T 3hbf_A 240 KLLLNVGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTP-PPHELTALAESLEEC-------GFPFIWSFRG 311 (454)
T ss_dssp SCEEECCCHHHHSCCSCCCCTTCHHHHHHTSCTTCEEEEECCSSCCC-CHHHHHHHHHHHHHH-------CCCEEEECCS
T ss_pred CCEEEECCcccccccccccchHHHHHHHhcCCCCceEEEecCCCCcC-CHHHHHHHHHHHHhC-------CCeEEEEeCC
Confidence 3566665421100 0 000001122345667777877643 344444444444332 4566665443
Q ss_pred CCCCcHHHHHHHH-HHHHhcCCCCcEEEecCCChHHHHHHHHhCc--EEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCC
Q psy15555 335 RNEEDEVCVKDMQ-DLCKHLSLENNVEFKVNLPYEDMKKEFSEGL--IGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGP 411 (488)
Q Consensus 335 ~~~~~~~~~~~l~-~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad--~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~ 411 (488)
. .. +.+. ...+. .++++.+.+++|+. .+++.++ +||. -++..+++|++++|+|+|+-+..+.
T Consensus 312 ~-----~~-~~lp~~~~~~--~~~~~~vv~w~Pq~---~vL~h~~v~~fvt----H~G~~S~~Eal~~GvP~i~~P~~~D 376 (454)
T 3hbf_A 312 D-----PK-EKLPKGFLER--TKTKGKIVAWAPQV---EILKHSSVGVFLT----HSGWNSVLECIVGGVPMISRPFFGD 376 (454)
T ss_dssp C-----HH-HHSCTTHHHH--TTTTEEEESSCCHH---HHHHSTTEEEEEE----CCCHHHHHHHHHHTCCEEECCCSTT
T ss_pred c-----ch-hcCCHhHHhh--cCCceEEEeeCCHH---HHHhhcCcCeEEe----cCCcchHHHHHHcCCCEecCccccc
Confidence 2 10 1111 11111 14678888999763 7788899 4553 2334689999999999999876432
Q ss_pred cc---ceecc-CCCccccceecC----CHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q psy15555 412 KM---DIVIE-DPETCRNGFLAC----DEVEYAQTIKLILHLSQDTKTRISQNAVSS 460 (488)
Q Consensus 412 ~~---eiv~~-~~~~~~~g~~~~----~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~ 460 (488)
.. ..+.+ . +.|..++ +.+++.+++.++++ ++ ..++++++|++.
T Consensus 377 Q~~Na~~v~~~~----g~Gv~l~~~~~~~~~l~~av~~ll~-~~-~~~~~r~~a~~l 427 (454)
T 3hbf_A 377 QGLNTILTESVL----EIGVGVDNGVLTKESIKKALELTMS-SE-KGGIMRQKIVKL 427 (454)
T ss_dssp HHHHHHHHHTTS----CSEEECGGGSCCHHHHHHHHHHHHS-SH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh----CeeEEecCCCCCHHHHHHHHHHHHC-CC-hHHHHHHHHHHH
Confidence 10 12222 2 4666653 78999999999998 64 234455555443
No 58
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=98.30 E-value=5.8e-05 Score=70.70 Aligned_cols=133 Identities=12% Similarity=0.052 Sum_probs=78.3
Q ss_pred CCCeEEEEeeccCCCCChH--HHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC
Q psy15555 287 DGPVKIISVAQFRPEKDHP--LQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN 364 (488)
Q Consensus 287 ~~~~~i~~~g~~~~~k~~~--~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 364 (488)
+++.+.+..|.-...|... .+.+....+.+ .+.++++.++++ +..+..++..+.. .++.+.|.
T Consensus 177 ~~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~-------~~~~vvl~~g~~-----~e~~~~~~i~~~~---~~~~l~g~ 241 (326)
T 2gt1_A 177 AGEYAVFLHATTRDDKHWPEEHWRELIGLLAD-------SGIRIKLPWGAP-----HEEERAKRLAEGF---AYVEVLPK 241 (326)
T ss_dssp TTSEEEEECCCSSGGGSCCHHHHHHHHHHTTT-------TCCEEEECCSSH-----HHHHHHHHHHTTC---TTEEECCC
T ss_pred CCCEEEEEeCCCCccccCCHHHHHHHHHHHHH-------CCCcEEEecCCH-----HHHHHHHHHHhhC---CcccccCC
Confidence 3456677777666666654 44555555432 357777764343 1113333443332 24677888
Q ss_pred CChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCcc---------ceeccCCCccccceecC-CHHH
Q psy15555 365 LPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKM---------DIVIEDPETCRNGFLAC-DEVE 434 (488)
Q Consensus 365 ~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~---------eiv~~~~~~~~~g~~~~-~~~~ 434 (488)
.+-.|+..+++.||++|+. ++ |..-+ |.|.|+|+|+--...... .++. + ....+-+ ++++
T Consensus 242 ~sl~el~ali~~a~l~I~~---DS-G~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~~~-~----~~~cm~~I~~~~ 311 (326)
T 2gt1_A 242 MSLEGVARVLAGAKFVVSV---DT-GLSHL-TAALDRPNITVYGPTDPGLIGGYGKNQMVCR-A----PGNELSQLTANA 311 (326)
T ss_dssp CCHHHHHHHHHTCSEEEEE---SS-HHHHH-HHHTTCCEEEEESSSCHHHHCCCSSSEEEEE-C----GGGCGGGCCHHH
T ss_pred CCHHHHHHHHHhCCEEEec---CC-cHHHH-HHHcCCCEEEEECCCChhhcCCCCCCceEec-C----CcccccCCCHHH
Confidence 8889999999999999986 22 33444 777999999842111110 1111 1 1112222 7888
Q ss_pred HHHHHHHHHc
Q psy15555 435 YAQTIKLILH 444 (488)
Q Consensus 435 l~~~i~~ll~ 444 (488)
+.+++.++++
T Consensus 312 V~~~i~~~l~ 321 (326)
T 2gt1_A 312 VKQFIEENAE 321 (326)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHHHH
Confidence 8888888876
No 59
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=98.25 E-value=6.2e-05 Score=71.18 Aligned_cols=101 Identities=13% Similarity=0.074 Sum_probs=64.3
Q ss_pred CCeEEEEeec-cCCCCChH--HHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcC--C-CCcEEE
Q psy15555 288 GPVKIISVAQ-FRPEKDHP--LQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLS--L-ENNVEF 361 (488)
Q Consensus 288 ~~~~i~~~g~-~~~~k~~~--~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~--l-~~~v~~ 361 (488)
++.+.+..|. ....|... .+.++++.+.++ ++++++.|... + .+..++..+..+ . .+.+.+
T Consensus 180 ~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~-------~~~vvl~g~~~-----e-~~~~~~i~~~~~~~~~~~~~~l 246 (348)
T 1psw_A 180 RPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDE-------GYQVVLFGSAK-----D-HEAGNEILAALNTEQQAWCRNL 246 (348)
T ss_dssp SCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHT-------TCEEEECCCGG-----G-HHHHHHHHTTSCHHHHTTEEEC
T ss_pred CcEEEEECCCCccccCCCCHHHHHHHHHHHHHC-------CCeEEEEeChh-----h-HHHHHHHHHhhhhccccceEec
Confidence 4566677776 44556654 667777666543 56788877542 1 133333333221 0 123466
Q ss_pred ecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEe
Q psy15555 362 KVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAH 406 (488)
Q Consensus 362 ~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~ 406 (488)
.|..+-.|+..+++.||++|+.. + | .+-.|+++|+|+|+-
T Consensus 247 ~g~~sl~e~~ali~~a~l~I~~D---s-g-~~HlAaa~g~P~v~l 286 (348)
T 1psw_A 247 AGETQLDQAVILIAACKAIVTND---S-G-LMHVAAALNRPLVAL 286 (348)
T ss_dssp TTTSCHHHHHHHHHTSSEEEEES---S-H-HHHHHHHTTCCEEEE
T ss_pred cCcCCHHHHHHHHHhCCEEEecC---C-H-HHHHHHHcCCCEEEE
Confidence 78888899999999999999864 2 2 233399999999983
No 60
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=98.24 E-value=0.00014 Score=75.99 Aligned_cols=214 Identities=8% Similarity=-0.019 Sum_probs=122.8
Q ss_pred hcccCEEEEcChhHHHHHHHHhccC-CceEEEcCCCCchhhhccC-----------CCCCCCCeEEEEeeccCCCC----
Q psy15555 239 GKYSDIIMVNSSWTEEHVIQLWNCQ-LKTYKLYPPCDTEDLKKIT-----------HSKTDGPVKIISVAQFRPEK---- 302 (488)
Q Consensus 239 ~~~~d~ii~~s~~~~~~~~~~~~~~-~k~~vi~~~~d~~~~~~~~-----------~~~~~~~~~i~~~g~~~~~k---- 302 (488)
.+..|.+++.|+...+.+.+.++.+ .++..++.|-....+.... -..+.++++|+|+-++....
T Consensus 476 ~~~~D~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~~~~~~~~~~~~~~~~~~~kk~ILyaPT~r~~~~~~~ 555 (729)
T 3l7i_A 476 TSRWDYLISPNRYSTEIFRSAFWMDEERILEIGYPRNDVLVNRANDQEYLDEIRTHLNLPSDKKVIMYAPTWRDDEFVSK 555 (729)
T ss_dssp HTTCSEEEESSHHHHHHHHHHTCCCGGGEEESCCGGGHHHHHSTTCHHHHHHHHHHTTCCSSCEEEEECCCCCGGGCCGG
T ss_pred hccCCEEEeCCHHHHHHHHHHhCCCcceEEEcCCCchHHHhcccchHHHHHHHHHHhCCCCCCeEEEEeeeeeCCccccc
Confidence 4667999999999999999988876 4676666663222221110 11346789999999877542
Q ss_pred -----ChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhC
Q psy15555 303 -----DHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEG 377 (488)
Q Consensus 303 -----~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~a 377 (488)
....-++.+.+... ++..+++-+ || .+.+.....+..+.+.-.... .++.++|..|
T Consensus 556 ~~~~~~~~~~~~~l~~~l~-------~~~~li~r~-Hp---------~~~~~~~~~~~~~~~~~~~~~--~di~~ll~~a 616 (729)
T 3l7i_A 556 GKYLFELKIDLDNLYKELG-------DDYVILLRM-HY---------LISNALDLSGYENFAIDVSNY--NDVSELFLIS 616 (729)
T ss_dssp GSSCCCCTTCHHHHHHHHT-------TTEEEEECC-CH---------HHHTTCCCTTCTTTEEECTTC--SCHHHHHHTC
T ss_pred cccccchhhHHHHHHHHcC-------CCeEEEEec-Cc---------chhccccccccCCcEEeCCCC--cCHHHHHHHh
Confidence 11112333333221 466655544 53 111111112233445444433 6899999999
Q ss_pred cEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceec-------cCCCccccceecCCHHHHHHHHHHHHccCHHHH
Q psy15555 378 LIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVI-------EDPETCRNGFLACDEVEYAQTIKLILHLSQDTK 450 (488)
Q Consensus 378 d~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~-------~~~~~~~~g~~~~~~~~l~~~i~~ll~~~~~~~ 450 (488)
|++|.- ++-.++|++..++|||.....- ++... +. ...-.|-++.|.++|.++|..... ..+..
T Consensus 617 D~lITD-----ySSv~fD~~~l~kPiif~~~D~--~~Y~~~~rg~y~d~-~~~~pg~~~~~~~eL~~~i~~~~~-~~~~~ 687 (729)
T 3l7i_A 617 DCLITD-----YSSVMFDYGILKRPQFFFAYDI--DKYDKGLRGFYMNY-MEDLPGPIYTEPYGLAKELKNLDK-VQQQY 687 (729)
T ss_dssp SEEEES-----SCTHHHHHGGGCCCEEEECTTT--TTTTSSCCSBSSCT-TSSSSSCEESSHHHHHHHHTTHHH-HHHHT
T ss_pred CEEEee-----chHHHHhHHhhCCCEEEecCCH--HHHhhccCCcccCh-hHhCCCCeECCHHHHHHHHhhhhc-cchhH
Confidence 998863 4668999999999999974321 11111 11 111356777799999999988765 33333
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Q psy15555 451 TRISQNAVSSVDRFSMEEFKNGFLTFTQPL 480 (488)
Q Consensus 451 ~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~ 480 (488)
.+..+.-.+..-.|.-...++++.+.+-+.
T Consensus 688 ~~~~~~~~~~~~~~~dg~as~ri~~~i~~~ 717 (729)
T 3l7i_A 688 QEKIDAFYDRFCSVDNGKASQYIGDLIHKD 717 (729)
T ss_dssp HHHHHHHHHHHSTTCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCccCChHHHHHHHHHHhc
Confidence 333333333222233445556655555443
No 61
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=98.18 E-value=0.0027 Score=62.62 Aligned_cols=89 Identities=11% Similarity=0.048 Sum_probs=57.9
Q ss_pred EEEecCCChHHHHHHHHhCcE--EEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCc---cce-eccCCCccccceecC--
Q psy15555 359 VEFKVNLPYEDMKKEFSEGLI--GLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPK---MDI-VIEDPETCRNGFLAC-- 430 (488)
Q Consensus 359 v~~~g~~~~~el~~~~~~ad~--~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~---~ei-v~~~~~~~~~g~~~~-- 430 (488)
+...+++|+. .+++.+++ ||. -++..+++||+++|+|+|+-+..+-. ... ++.. +.|..++
T Consensus 341 ~~v~~w~Pq~---~vL~h~~v~~fvt----HgG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~----G~g~~l~~~ 409 (480)
T 2vch_A 341 FVIPFWAPQA---QVLAHPSTGGFLT----HCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDI----RAALRPRAG 409 (480)
T ss_dssp EEEESCCCHH---HHHHSTTEEEEEE----CCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTT----CCEECCCCC
T ss_pred EEEeCccCHH---HHhCCCCcCeEEe----cccchhHHHHHHcCCCEEeccccccchHHHHHHHHHh----CeEEEeecc
Confidence 4555699764 77898884 443 23446899999999999998774321 022 3444 5666542
Q ss_pred -----CHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q psy15555 431 -----DEVEYAQTIKLILHLSQDTKTRISQNAVSS 460 (488)
Q Consensus 431 -----~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~ 460 (488)
+.+++.++|.+++. ++ .-.++.++|++.
T Consensus 410 ~~~~~~~~~l~~av~~vl~-~~-~~~~~r~~a~~l 442 (480)
T 2vch_A 410 DDGLVRREEVARVVKGLME-GE-EGKGVRNKMKEL 442 (480)
T ss_dssp TTSCCCHHHHHHHHHHHHT-ST-HHHHHHHHHHHH
T ss_pred cCCccCHHHHHHHHHHHhc-Cc-chHHHHHHHHHH
Confidence 67999999999997 43 223344444433
No 62
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=98.11 E-value=0.00011 Score=69.29 Aligned_cols=100 Identities=11% Similarity=0.147 Sum_probs=66.4
Q ss_pred CCeEEEEeeccCCCCCh--HHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCC
Q psy15555 288 GPVKIISVAQFRPEKDH--PLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNL 365 (488)
Q Consensus 288 ~~~~i~~~g~~~~~k~~--~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 365 (488)
++.+.+..|.-.+.|.. +.+.+....+.++ +.++++.|...+. +..++..+..+ ...+.+.|..
T Consensus 185 ~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~-------g~~vvl~g~~~e~------~~~~~i~~~~~-~~~~~l~g~~ 250 (349)
T 3tov_A 185 DILIGFNIGSAVPEKRWPAERFAHVADYFGRL-------GYKTVFFGGPMDL------EMVQPVVEQME-TKPIVATGKF 250 (349)
T ss_dssp CCEEEEECCCSSGGGCCCHHHHHHHHHHHHHH-------TCEEEECCCTTTH------HHHHHHHHTCS-SCCEECTTCC
T ss_pred CCEEEEeCCCCCccCCCCHHHHHHHHHHHHhC-------CCeEEEEeCcchH------HHHHHHHHhcc-cccEEeeCCC
Confidence 45566777765566665 4566666666654 4567777754211 33444444443 2346677888
Q ss_pred ChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEe
Q psy15555 366 PYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAH 406 (488)
Q Consensus 366 ~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~ 406 (488)
+-.|+..+++.||++|+. ++ |..-+ |.++|+|+|+-
T Consensus 251 sl~e~~ali~~a~~~i~~---Ds-G~~Hl-Aaa~g~P~v~l 286 (349)
T 3tov_A 251 QLGPLAAAMNRCNLLITN---DS-GPMHV-GISQGVPIVAL 286 (349)
T ss_dssp CHHHHHHHHHTCSEEEEE---SS-HHHHH-HHTTTCCEEEE
T ss_pred CHHHHHHHHHhCCEEEEC---CC-CHHHH-HHhcCCCEEEE
Confidence 889999999999999985 23 33334 89999999995
No 63
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=97.69 E-value=0.0012 Score=65.15 Aligned_cols=148 Identities=14% Similarity=0.080 Sum_probs=90.0
Q ss_pred CCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCC--CCcHHHHHHHHHHHHhcCCCCcEEEecCC
Q psy15555 288 GPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRN--EEDEVCVKDMQDLCKHLSLENNVEFKVNL 365 (488)
Q Consensus 288 ~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~--~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 365 (488)
+..+++..|+... .....+.+.+..+.+ .+.+++++-+... .+.....+.+.+.. ++++.+.+++
T Consensus 295 ~~vv~vs~GS~~~-~~~~~~~~~~~~l~~-------~~~~~l~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~v~~~~ 361 (482)
T 2pq6_A 295 GSVVYVNFGSTTV-MTPEQLLEFAWGLAN-------CKKSFLWIIRPDLVIGGSVIFSSEFTNEI-----ADRGLIASWC 361 (482)
T ss_dssp TCEEEEECCSSSC-CCHHHHHHHHHHHHH-------TTCEEEEECCGGGSTTTGGGSCHHHHHHH-----TTTEEEESCC
T ss_pred CceEEEecCCccc-CCHHHHHHHHHHHHh-------cCCcEEEEEcCCccccccccCcHhHHHhc-----CCCEEEEeec
Confidence 4567777777653 234444444444433 2466666543211 00000112333222 4689999999
Q ss_pred ChHHHHHHHHhCcE--EEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCcc---c-eeccCCCccccceecC---CHHHHH
Q psy15555 366 PYEDMKKEFSEGLI--GLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKM---D-IVIEDPETCRNGFLAC---DEVEYA 436 (488)
Q Consensus 366 ~~~el~~~~~~ad~--~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~---e-iv~~~~~~~~~g~~~~---~~~~l~ 436 (488)
|+. .+++.+++ ||. -++..++.|++++|+|+|+-+..+... . +++.. +.|+.++ +.+++.
T Consensus 362 pq~---~~L~h~~~~~~vt----h~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~----G~g~~l~~~~~~~~l~ 430 (482)
T 2pq6_A 362 PQD---KVLNHPSIGGFLT----HCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEW----EIGMEIDTNVKREELA 430 (482)
T ss_dssp CHH---HHHTSTTEEEEEE----CCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTS----CCEEECCSSCCHHHHH
T ss_pred CHH---HHhcCCCCCEEEe----cCCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHh----CEEEEECCCCCHHHHH
Confidence 765 47877665 554 344578999999999999988743210 1 22233 5777765 899999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHH
Q psy15555 437 QTIKLILHLSQDTKTRISQNAVSSV 461 (488)
Q Consensus 437 ~~i~~ll~~~~~~~~~~~~~a~~~~ 461 (488)
++|.+++. |++ .+++.++|++..
T Consensus 431 ~~i~~ll~-~~~-~~~~r~~a~~l~ 453 (482)
T 2pq6_A 431 KLINEVIA-GDK-GKKMKQKAMELK 453 (482)
T ss_dssp HHHHHHHT-SHH-HHHHHHHHHHHH
T ss_pred HHHHHHHc-CCc-HHHHHHHHHHHH
Confidence 99999998 876 356666666554
No 64
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=96.71 E-value=0.0013 Score=57.08 Aligned_cols=75 Identities=11% Similarity=-0.102 Sum_probs=53.2
Q ss_pred cEEEecCCChHHHHHHHH-hCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCcc-------ceeccCCCccccceec
Q psy15555 358 NVEFKVNLPYEDMKKEFS-EGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKM-------DIVIEDPETCRNGFLA 429 (488)
Q Consensus 358 ~v~~~g~~~~~el~~~~~-~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~-------eiv~~~~~~~~~g~~~ 429 (488)
++...+++ +++..+|+ .||++|.- ++..++.|++++|+|.|.-+...... +.+.+. +.++..
T Consensus 115 ~v~v~~f~--~~m~~~l~~~AdlvIsh----aGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~----G~~~~~ 184 (224)
T 2jzc_A 115 KVIGFDFS--TKMQSIIRDYSDLVISH----AGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVEL----GYVWSC 184 (224)
T ss_dssp EEEECCSS--SSHHHHHHHHCSCEEES----SCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHH----SCCCEE
T ss_pred eEEEeecc--chHHHHHHhcCCEEEEC----CcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHC----CCEEEc
Confidence 46677887 89999999 99998863 44569999999999999987643211 123222 344444
Q ss_pred CCHHHHHHHHHHHH
Q psy15555 430 CDEVEYAQTIKLIL 443 (488)
Q Consensus 430 ~~~~~l~~~i~~ll 443 (488)
+++++.++|.++.
T Consensus 185 -~~~~L~~~i~~l~ 197 (224)
T 2jzc_A 185 -APTETGLIAGLRA 197 (224)
T ss_dssp -CSCTTTHHHHHHH
T ss_pred -CHHHHHHHHHHHH
Confidence 6777888887763
No 65
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=96.28 E-value=0.042 Score=56.24 Aligned_cols=145 Identities=19% Similarity=0.204 Sum_probs=101.4
Q ss_pred CCCeEEEEeeccCCCCChHH-HHHHHHHh---HHhh-----hhhc---cCceEEEEEecC-CCCCcHHHHHHHHHHHHhc
Q psy15555 287 DGPVKIISVAQFRPEKDHPL-QLRAMYQL---RQII-----SEEL---WDNLKLIFIGST-RNEEDEVCVKDMQDLCKHL 353 (488)
Q Consensus 287 ~~~~~i~~~g~~~~~k~~~~-ll~a~~~l---~~~~-----~~~~---~~~~~l~ivG~~-~~~~~~~~~~~l~~~~~~~ 353 (488)
++....+++-|+...|...+ ++..+.++ ++.. ++.. ..+.++++.|.- |.. ...+.+-+++...
T Consensus 598 p~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y---~~aK~iIklI~~v 674 (879)
T 1ygp_A 598 DDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGY---YMAKLIIKLINCV 674 (879)
T ss_dssp GGCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTC---HHHHHHHHHHHHH
T ss_pred CCeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCc---HHHHHHHHHHHHH
Confidence 45678899999999999887 55554444 3330 1100 246788888853 433 3334444444333
Q ss_pred --------CCCC--cEEEecCCChHHHHHHHHhCcEEEEcC--CCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCCC
Q psy15555 354 --------SLEN--NVEFKVNLPYEDMKKEFSEGLIGLHAM--WNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPE 421 (488)
Q Consensus 354 --------~l~~--~v~~~g~~~~~el~~~~~~ad~~v~~s--~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~ 421 (488)
.+.+ .|+|+....-.-...++.+||+....| ..|..|..-+=+|..|.+.|++-.|.+. |+.++-
T Consensus 675 a~~iN~Dp~v~~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDGanv-Ei~e~v-- 751 (879)
T 1ygp_A 675 ADIVNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANV-EITREI-- 751 (879)
T ss_dssp HHHHTTCGGGTTSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTHHH-HHHHHH--
T ss_pred HHHhccChhhCCceEEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccchhH-HHHHHc--
Confidence 2344 699999888888888999999998887 5699999999999999999999888886 887651
Q ss_pred ccccceecC-CHHHHHH
Q psy15555 422 TCRNGFLAC-DEVEYAQ 437 (488)
Q Consensus 422 ~~~~g~~~~-~~~~l~~ 437 (488)
+.+|+|++. +.+++.+
T Consensus 752 G~eN~fiFG~~~~ev~~ 768 (879)
T 1ygp_A 752 GEDNVFLFGNLSENVEE 768 (879)
T ss_dssp CGGGSEEESCCHHHHHH
T ss_pred CcccEEEccCCHHHHHH
Confidence 126888886 5555443
No 66
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=93.30 E-value=3.1 Score=34.60 Aligned_cols=211 Identities=14% Similarity=0.083 Sum_probs=120.4
Q ss_pred HhcccCEEEEcChh---HHHHHHHHhccCC----------ceEEEcCCCCchhhhccC-CCC-CCCCeEEEEeeccCCCC
Q psy15555 238 VGKYSDIIMVNSSW---TEEHVIQLWNCQL----------KTYKLYPPCDTEDLKKIT-HSK-TDGPVKIISVAQFRPEK 302 (488)
Q Consensus 238 ~~~~~d~ii~~s~~---~~~~~~~~~~~~~----------k~~vi~~~~d~~~~~~~~-~~~-~~~~~~i~~~g~~~~~k 302 (488)
..++||.+...|+. .+-.+.+.++... .+.-+.+|.|.-...... +.. .-+-.+=-|+||-+.+|
T Consensus 131 tvrradvifshsdngdfnkvlmkewypetvslfddieeaptvynfqppmdivkvrstywkdvseinmninrwigrtttwk 210 (401)
T 1xv5_A 131 TVRRADVIFSHSDNGDFNKVLMKEWYPETVSLFDDIEEAPTVYNFQPPMDIVKVRSTYWKDVSEINMNINRWIGRTTTWK 210 (401)
T ss_dssp HHHHCSEEEESCTTSHHHHTHHHHHSCSSCCSSSCCCCCCCEEECCCCBCHHHHHHHHCCCGGGCEEEEEEEECCSCGGG
T ss_pred hhhhhceEEecCCCCcHHHHHHHhhccchhhhhcchhhCCceeccCCCceeeeeehhhhccHHHhhcchhhhhcccchhH
Confidence 45779999998863 2223344333110 222233444443322211 111 01223456899999999
Q ss_pred ChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCC-----------------CcEEEecCC
Q psy15555 303 DHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLE-----------------NNVEFKVNL 365 (488)
Q Consensus 303 ~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~-----------------~~v~~~g~~ 365 (488)
|.-.+.+-..++.+-. .-.-++-|-.. ...+. .+++.|++ ..-.+++-.
T Consensus 211 gfyqmfdfhekflkpa------gkstvmegler-------spafi-aikekgipyeyygnreidkmnlapnqpaqildcy 276 (401)
T 1xv5_A 211 GFYQMFDFHEKFLKPA------GKSTVMEGLER-------SPAFI-AIKEKGIPYEYYGNREIDKMNLAPNQPAQILDCY 276 (401)
T ss_dssp CHHHHHHHHHHTTTTT------TCEEEEECCCC-------SHHHH-HHHHTTCCEEEECGGGGGGCCCSSSCCEEEESCC
T ss_pred hHHHHhhHHHHhcCcc------chhhhhhhhhc-------CCceE-EEcccCCchhhcCcchhhhhcCCCCCcchhhhhe
Confidence 9999999888876532 22334444321 12222 23444443 113334443
Q ss_pred ChHHHHHHHHhCcEEEEcCC------CCcCCccHHHHHHcCCcEEEeCCCC-CccceeccCC-Ccccccee-cC--CHHH
Q psy15555 366 PYEDMKKEFSEGLIGLHAMW------NEHFGIGIVECMAAGLIMIAHKSGG-PKMDIVIEDP-ETCRNGFL-AC--DEVE 434 (488)
Q Consensus 366 ~~~el~~~~~~ad~~v~~s~------~e~~g~~~lEa~a~G~PvI~~~~~~-~~~eiv~~~~-~~~~~g~~-~~--~~~~ 434 (488)
-..|+.+-++.+...-..|. ....-.+-+|--|||.-.+.....| +..--+.+.+ ..+..|++ ++ |.++
T Consensus 277 insemlermsksgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntpltshdsgiiwfdendmes 356 (401)
T 1xv5_A 277 INSEMLERMSKSGFGYQLSKLNQKYLQRSLEYTHLELGACGTIPVFWKSTGENLKFRVDNTPLTSHDSGIIWFDENDMES 356 (401)
T ss_dssp CHHHHHHHHHTEEEEEECCCCCGGGCSSCCCHHHHHHHHHTSEEEEEHHHHHHSBCTTTCCBGGGSCCSCEEECTTCHHH
T ss_pred ecHHHHHHhhhcCcccchHHHHHHHHHhhhhhheeecccccceeeeecccCcceEEEecCCcccccCCceEEecCCchHH
Confidence 45799999999987776663 2334557799999998777744322 1100011100 01134544 33 8888
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHH-hh
Q psy15555 435 YAQTIKLILHLSQDTKTRISQNAVSSV-DR 463 (488)
Q Consensus 435 l~~~i~~ll~~~~~~~~~~~~~a~~~~-~~ 463 (488)
-.+.|.++-. |...+.+-.+.|.+.. ++
T Consensus 357 tferikelss-dralydrerekayeflyqh 385 (401)
T 1xv5_A 357 TFERIKELSS-DRALYDREREKAYEFLYQH 385 (401)
T ss_dssp HHHHHHHHHT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc-chhhhhHHHHHHHHHHHhc
Confidence 8999999998 9999999999998887 44
No 67
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=91.30 E-value=5.8 Score=33.21 Aligned_cols=202 Identities=12% Similarity=0.147 Sum_probs=121.9
Q ss_pred HHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCCchhhhccCC---CCCCCCeEEEEeeccCCCCChHHHHHHHH
Q psy15555 236 SHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITH---SKTDGPVKIISVAQFRPEKDHPLQLRAMY 312 (488)
Q Consensus 236 ~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d~~~~~~~~~---~~~~~~~~i~~~g~~~~~k~~~~ll~a~~ 312 (488)
..+.+.-=.++.+.......-...-.....+...+-+++.-......- ....+-..++|.|++........+++-+
T Consensus 125 ~~~i~spi~visqg~~l~~ak~~h~~vd~~~ef~~f~~~~~k~~~~~f~~~~~~~k~~d~iyggsfrsg~re~kmve~l- 203 (351)
T 1jg7_A 125 ELLIKSPIKVISQGINLDIAKAAHKKVDNVIEFEYFPIEQYKIHMNDFQLSKPTKKTLDVIYGGSFRSGQRESKMVEFL- 203 (351)
T ss_dssp HHCCCSCEEEEESCSSCHHHHHHTTTCSSEEEEEECCGGGHHHHSTTCCCCCCCCCCEEEEEECCCGGGTTHHHHHHHH-
T ss_pred hhhhcCchhhhhcccCHHHHHHhhccccceeEEEEechHHhhhhhhheeecCCccceeeeeeccccccCchHHHHHHHH-
Confidence 345555667777776543333322233346677777776554433221 1123446799999988766655555443
Q ss_pred HhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcE-EEEcC-CCC-c-
Q psy15555 313 QLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLI-GLHAM-WNE-H- 388 (488)
Q Consensus 313 ~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~-~v~~s-~~e-~- 388 (488)
-. ..+.+-+.|.... ++++. .+......=+|.|.+|..++.+-=+.|-+ ++.+- .++ .
T Consensus 204 --fd-------tgl~ieffg~~~~-------~qfkn--p~~pwt~~pvf~gki~~~~~~~~ns~a~a~~i~gdk~y~~n~ 265 (351)
T 1jg7_A 204 --FD-------TGLNIEFFGNARE-------KQFKN--PKYPWTKAPVFTGKIPMNMVSEKNSQAIAALIIGDKNYNDNF 265 (351)
T ss_dssp --SS-------CSSCEEEESSCCG-------GGCCC--TTSCCSSCCEEEECCCGGGHHHHHTTEEEEEECCCGGGTTTC
T ss_pred --Hh-------cCcceeeecchhH-------HhccC--CCCCCcCCCccCCcCCHHHHhhccccceEEEEeccccccCCe
Confidence 22 2456667786531 11110 12233344679999999999988877773 34433 222 2
Q ss_pred CCccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhh
Q psy15555 389 FGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILHLSQDTKTRISQNAVSSVDR 463 (488)
Q Consensus 389 ~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~~~~ 463 (488)
--..+.|+||.....+.-..-.+...++++. -+.++|-++|.+.+.++-+ +...|.++-+--.+.+++
T Consensus 266 it~rvwe~~as~av~~~d~~fd~~~~i~~~a------~fyv~nr~elid~in~~k~-~~~~r~e~l~~qh~il~k 333 (351)
T 1jg7_A 266 ITLRVWETMASDAVMLIDEEFDTKHRIINDA------RFYVNNRAELIDRVNELKH-SDVLRKEMLSIQHDILNK 333 (351)
T ss_dssp CCHHHHHHHTSSSEEEEEGGGCTTCCSCSCG------GGEECSHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHhhhhHhhhhcccCcccccccCc------eeEecCHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHH
Confidence 2345799999876665543333333556543 4788899999999999999 999999987765555544
No 68
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=84.02 E-value=5.1 Score=30.66 Aligned_cols=108 Identities=8% Similarity=0.032 Sum_probs=66.3
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh---------CcEEEEcC-CCCcCCccHHH
Q psy15555 326 LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE---------GLIGLHAM-WNEHFGIGIVE 395 (488)
Q Consensus 326 ~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~---------ad~~v~~s-~~e~~g~~~lE 395 (488)
.+++++.+.+ ...+.+.+..+..|....+...... ++....+.. .|+++.-. ..+.-|..+++
T Consensus 3 ~~ilivdd~~-----~~~~~l~~~L~~~~~~~~v~~~~~~--~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 75 (140)
T 1k68_A 3 KKIFLVEDNK-----ADIRLIQEALANSTVPHEVVTVRDG--MEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLA 75 (140)
T ss_dssp CEEEEECCCH-----HHHHHHHHHHHTCSSCCEEEEECSH--HHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHH
T ss_pred CeEEEEeCCH-----HHHHHHHHHHHhcCCCceEEEECCH--HHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHH
Confidence 4667777654 5667788888877753345555543 777777764 67666544 33334566666
Q ss_pred HHH-----cCCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 396 CMA-----AGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 396 a~a-----~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.+. .++|+|........+ +..+.+ ..+++.. +.+++.+++.+++.
T Consensus 76 ~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g----~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 76 EIKSDPTLKRIPVVVLSTSINEDDIFHSYDLH----VNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp HHHHSTTGGGSCEEEEESCCCHHHHHHHHHTT----CSEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHcCcccccccEEEEecCCcHHHHHHHHHhc----hhheecCCCCHHHHHHHHHHHHH
Confidence 654 467887743322221 223333 5567765 89999999888775
No 69
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=82.05 E-value=38 Score=32.65 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=27.4
Q ss_pred cccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 51 VLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 51 ~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
+.|||.++ |+.++-..+++.|.+. +++|++.-.+
T Consensus 2 ~~M~iiI~--------G~G~vG~~la~~L~~~--~~~v~vId~d 35 (461)
T 4g65_A 2 NAMKIIIL--------GAGQVGGTLAENLVGE--NNDITIVDKD 35 (461)
T ss_dssp CCEEEEEE--------CCSHHHHHHHHHTCST--TEEEEEEESC
T ss_pred CcCEEEEE--------CCCHHHHHHHHHHHHC--CCCEEEEECC
Confidence 57998886 6678889999999887 7888877665
No 70
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=80.45 E-value=7 Score=30.60 Aligned_cols=109 Identities=8% Similarity=0.075 Sum_probs=67.8
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHH-----------hCcEEEEcC-CCCcCCcc
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS-----------EGLIGLHAM-WNEHFGIG 392 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~-----------~ad~~v~~s-~~e~~g~~ 392 (488)
..+++|+.+.+ ...+.+++.+++.|....|...... ++..+.+. ..|+++.-. ..+.-|..
T Consensus 4 ~~~ILivddd~-----~~~~~l~~~L~~~g~~~~v~~~~~~--~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~ 76 (152)
T 3heb_A 4 SVTIVMIEDDL-----GHARLIEKNIRRAGVNNEIIAFTDG--TSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGID 76 (152)
T ss_dssp -CEEEEECCCH-----HHHHHHHHHHHHTTCCCCEEEESSH--HHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHH
T ss_pred CceEEEEeCCH-----HHHHHHHHHHHhCCCcceEEEeCCH--HHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHH
Confidence 45777887654 6667888888888764456655544 77777774 356665543 33445667
Q ss_pred HHHHHHc-----CCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 393 IVECMAA-----GLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 393 ~lEa~a~-----G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
+++.+.. ++|||........+ +..+.+ ..+++.+ +.+++.++|.++..
T Consensus 77 ~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g----~~~~l~KP~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 77 ILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLG----ANVYITKPVNYENFANAIRQLGL 134 (152)
T ss_dssp HHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTT----CSEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccCCCEEEEecCCCHHHHHHHHHCC----CcEEEeCCCCHHHHHHHHHHHHH
Confidence 7776654 67887744332221 233333 5567765 88999888887743
No 71
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=80.30 E-value=9.9 Score=29.27 Aligned_cols=113 Identities=7% Similarity=-0.006 Sum_probs=66.8
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh-------CcEEEEcC-CCCcCCccHHH
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE-------GLIGLHAM-WNEHFGIGIVE 395 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~-------ad~~v~~s-~~e~~g~~~lE 395 (488)
...+++|+.+.+ ...+.+....+..+....+..... .++..+.+.. .|+++.-. ..+.-|..+++
T Consensus 8 ~~~~iLivdd~~-----~~~~~l~~~l~~~~~~~~v~~~~~--~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~ 80 (146)
T 3ilh_A 8 KIDSVLLIDDDD-----IVNFLNTTIIRMTHRVEEIQSVTS--GNAAINKLNELYAAGRWPSIICIDINMPGINGWELID 80 (146)
T ss_dssp CEEEEEEECSCH-----HHHHHHHHHHHTTCCEEEEEEESS--HHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHH
T ss_pred ccceEEEEeCCH-----HHHHHHHHHHHhcCCCeeeeecCC--HHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHH
Confidence 356778887654 555677777777664223444443 3777777765 67665543 34445666666
Q ss_pred HHHc-------CCcEEEeCCCCCccceeccCCCcc-ccceecC--CHHHHHHHHHHHHc
Q psy15555 396 CMAA-------GLIMIAHKSGGPKMDIVIEDPETC-RNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 396 a~a~-------G~PvI~~~~~~~~~eiv~~~~~~~-~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.+.. ..|+|........+...... ..+ ..+++.. +.++|.++|.+...
T Consensus 81 ~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~-~~g~~~~~l~KP~~~~~L~~~i~~~~~ 138 (146)
T 3ilh_A 81 LFKQHFQPMKNKSIVCLLSSSLDPRDQAKAE-ASDWVDYYVSKPLTANALNNLYNKVLN 138 (146)
T ss_dssp HHHHHCGGGTTTCEEEEECSSCCHHHHHHHH-HCSSCCEEECSSCCHHHHHHHHHHHHC
T ss_pred HHHHhhhhccCCCeEEEEeCCCChHHHHHHH-hcCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 5543 67777754433321222221 111 2346665 99999999999887
No 72
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=80.26 E-value=7.8 Score=29.86 Aligned_cols=107 Identities=12% Similarity=0.102 Sum_probs=65.2
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHH----hCcEEEEcC-CCCcCCccHHHHHH-
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS----EGLIGLHAM-WNEHFGIGIVECMA- 398 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~----~ad~~v~~s-~~e~~g~~~lEa~a- 398 (488)
..+++|+.+.+ ...+.+++..+..|. .+..... .++....+. ..|+++.-. ..+.-|..+++.+.
T Consensus 3 ~~~ilivdd~~-----~~~~~l~~~l~~~g~--~v~~~~~--~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~ 73 (143)
T 3jte_A 3 LAKILVIDDES-----TILQNIKFLLEIDGN--EVLTASS--STEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKK 73 (143)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEESS--HHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCEEEEEcCCH-----HHHHHHHHHHHhCCc--eEEEeCC--HHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHH
Confidence 34677777654 556778888877763 3444333 366666665 467555543 34444556665544
Q ss_pred --cCCcEEEeCCCCCc---cceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 --AGLIMIAHKSGGPK---MDIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 --~G~PvI~~~~~~~~---~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..+|||........ .+.++.+ ..+++.. +.+++.+++..++.
T Consensus 74 ~~~~~~ii~ls~~~~~~~~~~~~~~g----~~~~l~kp~~~~~l~~~l~~~~~ 122 (143)
T 3jte_A 74 ITPHMAVIILTGHGDLDNAILAMKEG----AFEYLRKPVTAQDLSIAINNAIN 122 (143)
T ss_dssp HCTTCEEEEEECTTCHHHHHHHHHTT----CSEEEESSCCHHHHHHHHHHHHH
T ss_pred hCCCCeEEEEECCCCHHHHHHHHHhC----cceeEeCCCCHHHHHHHHHHHHH
Confidence 36788774332222 1233444 5667765 89999999999887
No 73
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=79.27 E-value=19 Score=27.46 Aligned_cols=108 Identities=5% Similarity=0.036 Sum_probs=65.2
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHHc-
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMAA- 399 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a~- 399 (488)
...+++|+.+.+ ...+.+.+..+..|. .|..... .++....+.. .|+++.-. ..+.-|..+++.+..
T Consensus 6 ~~~~iLivdd~~-----~~~~~l~~~L~~~g~--~v~~~~~--~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 76 (142)
T 3cg4_A 6 HKGDVMIVDDDA-----HVRIAVKTILSDAGF--HIISADS--GGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDN 76 (142)
T ss_dssp CCCEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEESS--HHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHT
T ss_pred CCCeEEEEcCCH-----HHHHHHHHHHHHCCe--EEEEeCC--HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 356778887654 566778888877764 3544443 3777777765 45555443 333445667776653
Q ss_pred ----CCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 ----GLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 ----G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.+|||........+ +..+.+ ..+++.. +.+++.+++..++.
T Consensus 77 ~~~~~~pii~~s~~~~~~~~~~~~~~g----~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 77 SLEQGIAIVMLTAKNAPDAKMIGLQEY----VVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp TCCTTEEEEEEECTTCCCCSSTTGGGG----EEEEEESSCCHHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCHHHHHHHHhcC----ccEEEeCCCCHHHHHHHHHHHHH
Confidence 57777643322211 223333 4566655 89999999988875
No 74
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=78.65 E-value=16 Score=27.91 Aligned_cols=109 Identities=9% Similarity=0.095 Sum_probs=66.2
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--------CcEEEEcC-CCCcCCccHHH
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--------GLIGLHAM-WNEHFGIGIVE 395 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--------ad~~v~~s-~~e~~g~~~lE 395 (488)
..+++|+.+.+ ...+.+.+..++.|....|...... ++....+.. .|+++.-. ..+.-|..+++
T Consensus 7 ~~~ILivdd~~-----~~~~~l~~~L~~~g~~~~v~~~~~~--~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~ 79 (143)
T 2qvg_A 7 KVDILYLEDDE-----VDIQSVERVFHKISSLIKIEIAKSG--NQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLK 79 (143)
T ss_dssp CCSEEEECCCH-----HHHHHHHHHHHHHCTTCCEEEESSH--HHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHH
T ss_pred CCeEEEEeCCH-----HHHHHHHHHHHHhCCCceEEEECCH--HHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHH
Confidence 45677887664 5667888888887754356665554 777777764 67655543 33334566676
Q ss_pred HHH-----cCCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 396 CMA-----AGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 396 a~a-----~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.+. ..+|+|........+ +..+.+ ..+++.. +.+++.+++.....
T Consensus 80 ~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g----~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 80 ELRDDSSFTDIEVFVLTAAYTSKDKLAFESLN----IRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp HHTTSGGGTTCEEEEEESCCCHHHHHHHTTTT----CCEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHcCccccCCcEEEEeCCCCHHHHHHHHhcC----CCeEEECCCCHHHHHHHHHHHHH
Confidence 665 467877743332221 223333 4566655 88999888665443
No 75
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=78.10 E-value=16 Score=27.91 Aligned_cols=107 Identities=5% Similarity=0.065 Sum_probs=66.2
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhC--cEEEEcC-CCCcCCccHHHHHHc--
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEG--LIGLHAM-WNEHFGIGIVECMAA-- 399 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~a--d~~v~~s-~~e~~g~~~lEa~a~-- 399 (488)
..+++|+.+.+ ...+.+++..++.|. .+..... .++....+... |+++.-. ..+.-|..+++.+..
T Consensus 6 ~~~iLivdd~~-----~~~~~l~~~l~~~g~--~v~~~~~--~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 76 (140)
T 3grc_A 6 RPRILICEDDP-----DIARLLNLMLEKGGF--DSDMVHS--AAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDS 76 (140)
T ss_dssp CSEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEECS--HHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSG
T ss_pred CCCEEEEcCCH-----HHHHHHHHHHHHCCC--eEEEECC--HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCc
Confidence 45777777654 556777887877664 2544443 36766666554 5655543 334456677776654
Q ss_pred ---CCcEEEeCCCCCcc----ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 ---GLIMIAHKSGGPKM----DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 ---G~PvI~~~~~~~~~----eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.+|+|......... +....+ ..+++.. +.+++.++|.+++.
T Consensus 77 ~~~~~~ii~~s~~~~~~~~~~~~~~~g----~~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 77 RTRDLAIVVVSANAREGELEFNSQPLA----VSTWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp GGTTCEEEEECTTHHHHHHHHCCTTTC----CCEEECSSCCHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEecCCChHHHHHHhhhcC----CCEEEeCCCCHHHHHHHHHHHHH
Confidence 78888854432221 222223 4567765 89999999999886
No 76
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=77.23 E-value=7.5 Score=30.16 Aligned_cols=108 Identities=8% Similarity=0.082 Sum_probs=65.5
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHHc-
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMAA- 399 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a~- 399 (488)
...+++++.+.+ ...+.+.+..+..|. .|..... .++....+.. .|+++.-. ..+.-|..+++.+..
T Consensus 7 ~~~~iLivd~~~-----~~~~~l~~~L~~~g~--~v~~~~~--~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 77 (147)
T 2zay_A 7 KWWRIMLVDTQL-----PALAASISALSQEGF--DIIQCGN--AIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKN 77 (147)
T ss_dssp -CEEEEEECTTG-----GGGHHHHHHHHHHTE--EEEEESS--HHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTS
T ss_pred CCceEEEEeCCH-----HHHHHHHHHHHHcCC--eEEEeCC--HHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcC
Confidence 356788888765 444677777777664 3444443 3666666654 57655543 334456677777654
Q ss_pred ----CCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 ----GLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 ----G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
++|||........+ +....+ ..+++.. +.+++.++|..++.
T Consensus 78 ~~~~~~pii~ls~~~~~~~~~~~~~~g----~~~~l~kp~~~~~L~~~i~~~~~ 127 (147)
T 2zay_A 78 PQTASIPVIALSGRATAKEEAQLLDMG----FIDFIAKPVNAIRLSARIKRVLK 127 (147)
T ss_dssp TTTTTSCEEEEESSCCHHHHHHHHHHT----CSEEEESSCCHHHHHHHHHHHHH
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHhCC----CCEEEeCCCCHHHHHHHHHHHHH
Confidence 67887743322221 223334 5577765 89999999998876
No 77
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=76.26 E-value=11 Score=29.15 Aligned_cols=109 Identities=6% Similarity=0.043 Sum_probs=66.6
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh------------CcEEEEcC-CCCcCCc
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE------------GLIGLHAM-WNEHFGI 391 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~------------ad~~v~~s-~~e~~g~ 391 (488)
..+++|+.+.+ ...+.+++..+..|....+...... ++....+.. .|+++.-. ..+.-|.
T Consensus 6 ~~~iLivdd~~-----~~~~~l~~~L~~~g~~~~v~~~~~~--~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~ 78 (149)
T 1k66_A 6 TQPLLVVEDSD-----EDFSTFQRLLQREGVVNPIYRCITG--DQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGR 78 (149)
T ss_dssp TSCEEEECCCH-----HHHHHHHHHHHHTTBCSCEEEECSH--HHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHH
T ss_pred CccEEEEECCH-----HHHHHHHHHHHHcCCCceEEEECCH--HHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHH
Confidence 45677777654 5567788888887753345555543 777777764 57666544 3333456
Q ss_pred cHHHHHH-----cCCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 392 GIVECMA-----AGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 392 ~~lEa~a-----~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.+++.+. ..+|+|........+ +..+.+ ..+++.. +.+++.+.+.+++.
T Consensus 79 ~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g----~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 79 EVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYS----ISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp HHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTT----CSEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCC----CCEEEeCCCCHHHHHHHHHHHHH
Confidence 6666665 457777643322221 223333 5567765 88999998888775
No 78
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=75.28 E-value=12 Score=29.23 Aligned_cols=110 Identities=6% Similarity=0.009 Sum_probs=64.3
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHH---------hCcEEEEcCC-CCcCCccH
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS---------EGLIGLHAMW-NEHFGIGI 393 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~---------~ad~~v~~s~-~e~~g~~~ 393 (488)
+..+++|+.+.+ ...+.++...+..+....+.... +..+....+. ..|+++.-.. .+.-|..+
T Consensus 7 ~~~~ILivdd~~-----~~~~~l~~~L~~~~~~~~v~~~~--~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l 79 (149)
T 1i3c_A 7 PPKVILLVEDSK-----ADSRLVQEVLKTSTIDHELIILR--DGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREV 79 (149)
T ss_dssp CCEEEEEECCCH-----HHHHHHHHHHHSCCSCEEEEEEC--SHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHH
T ss_pred CCCeEEEEECCH-----HHHHHHHHHHHhcCCCccEEEeC--CHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHH
Confidence 356778888764 55567777777665322343333 3367667665 3676665443 23345666
Q ss_pred HHHHHc-----CCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 394 VECMAA-----GLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 394 lEa~a~-----G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
++.+.. ++|||........+ +..+.+ ..+++.. +.+++.+++..++.
T Consensus 80 ~~~l~~~~~~~~~piiils~~~~~~~~~~~~~~g----a~~~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 80 LAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELH----VNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp HHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTT----CSEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHHhCcCcCCCeEEEEECCCChHHHHHHHHcC----CcEEEECCCCHHHHHHHHHHHHH
Confidence 766643 56877643322221 223334 5677765 88899888887653
No 79
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=73.51 E-value=28 Score=26.50 Aligned_cols=107 Identities=13% Similarity=0.148 Sum_probs=64.9
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh---CcEEEEcCCC-C-cCCccHHHHHH-
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE---GLIGLHAMWN-E-HFGIGIVECMA- 398 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~---ad~~v~~s~~-e-~~g~~~lEa~a- 398 (488)
+.++.|+.+.+ ...+.+.+..++.|. .|.... +.++....+.. .|+++.-... + .-|..+++.+.
T Consensus 5 ~~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~ 75 (140)
T 3h5i_A 5 DKKILIVEDSK-----FQAKTIANILNKYGY--TVEIAL--TGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQ 75 (140)
T ss_dssp -CEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEES--SHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHH
T ss_pred CcEEEEEeCCH-----HHHHHHHHHHHHcCC--EEEEec--ChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHh
Confidence 45777887654 556778888887764 344333 34677776654 4766654433 3 44556665544
Q ss_pred -cCCcEEEeCCCCCc---cceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 -AGLIMIAHKSGGPK---MDIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 -~G~PvI~~~~~~~~---~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
-.+|||........ .+..+.+ ..+++.. +.+++.++|..++.
T Consensus 76 ~~~~~ii~ls~~~~~~~~~~~~~~g----~~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 76 ISELPVVFLTAHTEPAVVEKIRSVT----AYGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp HCCCCEEEEESSSSCCCCGGGGGSC----EEEEEETTCCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHhCC----CcEEEeCCCCHHHHHHHHHHHHH
Confidence 47888874332222 1233333 5567765 89999999999886
No 80
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=73.43 E-value=13 Score=28.05 Aligned_cols=108 Identities=12% Similarity=0.191 Sum_probs=65.5
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHH---hCcEEEEcC-CCCcCCccHHHHHHc-
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS---EGLIGLHAM-WNEHFGIGIVECMAA- 399 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~---~ad~~v~~s-~~e~~g~~~lEa~a~- 399 (488)
..++.++.+.+ ...+.+++..++.|.. .+..... ..+....+. ..|+++.-. ..+.-|..+++.+..
T Consensus 5 ~~~iLivdd~~-----~~~~~l~~~L~~~g~~-~v~~~~~--~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~ 76 (129)
T 3h1g_A 5 SMKLLVVDDSS-----TMRRIIKNTLSRLGYE-DVLEAEH--GVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSD 76 (129)
T ss_dssp -CCEEEECSCH-----HHHHHHHHHHHHTTCC-CEEEESS--HHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTS
T ss_pred CcEEEEEeCCH-----HHHHHHHHHHHHcCCc-EEEEeCC--HHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 45777887664 5667788888887753 3443333 245544443 356666543 334446777777653
Q ss_pred ----CCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 ----GLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 ----G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.+|||......... +..+.+ ..+++.+ +.+++.+++..++.
T Consensus 77 ~~~~~~pii~~s~~~~~~~~~~~~~~g----~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 77 SRFKEIPIIMITAEGGKAEVITALKAG----VNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp TTCTTCCEEEEESCCSHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHC
T ss_pred CCCCCCeEEEEeCCCChHHHHHHHHcC----ccEEEeCCCCHHHHHHHHHHHhc
Confidence 57888744332221 233334 5677766 99999999999886
No 81
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=73.26 E-value=15 Score=28.25 Aligned_cols=109 Identities=6% Similarity=0.051 Sum_probs=66.9
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHHc--
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMAA-- 399 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a~-- 399 (488)
..+++|+.+.+ ...+.+++..++.|....+...... ++....+.. .|+++.-. ..+.-|..+++.+..
T Consensus 5 ~~~ILivdd~~-----~~~~~l~~~L~~~~~~~~v~~~~~~--~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (144)
T 3kht_A 5 SKRVLVVEDNP-----DDIALIRRVLDRKDIHCQLEFVDNG--AKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPG 77 (144)
T ss_dssp CEEEEEECCCH-----HHHHHHHHHHHHTTCCEEEEEESSH--HHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSS
T ss_pred CCEEEEEeCCH-----HHHHHHHHHHHhcCCCeeEEEECCH--HHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 56778887654 5567788888887754334444443 777777665 45655543 334456677777654
Q ss_pred ---CCcEEEeCCCCCcc---ceeccCCCccccceecC---CHHHHHHHHHHHHc
Q psy15555 400 ---GLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC---DEVEYAQTIKLILH 444 (488)
Q Consensus 400 ---G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~---~~~~l~~~i~~ll~ 444 (488)
++|+|........+ +..+.+ ..+++.. +.+++.++|..++.
T Consensus 78 ~~~~~pii~~s~~~~~~~~~~~~~~g----a~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 78 ANQHTPIVILTDNVSDDRAKQCMAAG----ASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp TTTTCCEEEEETTCCHHHHHHHHHTT----CSEEEECCTTSHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHcC----CCEEEECCCCcHHHHHHHHHHHHH
Confidence 67888754332221 223333 5566654 78889888888875
No 82
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=72.45 E-value=11 Score=29.82 Aligned_cols=106 Identities=13% Similarity=0.169 Sum_probs=56.8
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEE-EecCCChHHHHHHHHh----CcEEEEcC-CCCcCCccHHHHHH-
Q psy15555 326 LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVE-FKVNLPYEDMKKEFSE----GLIGLHAM-WNEHFGIGIVECMA- 398 (488)
Q Consensus 326 ~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~~~el~~~~~~----ad~~v~~s-~~e~~g~~~lEa~a- 398 (488)
.+++|+.+.+ ...+.+++.+++.|. .+. ... +.++....+.. .|+++.-. ..+.-|..+++.+.
T Consensus 37 ~~Ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~~--~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~ 107 (157)
T 3hzh_A 37 FNVLIVDDSV-----FTVKQLTQIFTSEGF--NIIDTAA--DGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIME 107 (157)
T ss_dssp CEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEEES--SHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHH
T ss_pred eEEEEEeCCH-----HHHHHHHHHHHhCCC--eEEEEEC--CHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHh
Confidence 4566666543 444566666666553 232 222 22555555543 36555543 23334555555443
Q ss_pred --cCCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 --AGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 --~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..+|||........+ +..+.+ ..+++.. +.+++.++|.+++.
T Consensus 108 ~~~~~~ii~ls~~~~~~~~~~~~~~g----~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 108 FDKNARVIMISALGKEQLVKDCLIKG----AKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp HCTTCCEEEEESCCCHHHHHHHHHTT----CSEEEESSCCHHHHHHHHHHTTC
T ss_pred hCCCCcEEEEeccCcHHHHHHHHHcC----CCEEEeCCCCHHHHHHHHHHHhc
Confidence 367777744332221 223333 5567765 89999999988764
No 83
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=70.37 E-value=19 Score=28.07 Aligned_cols=107 Identities=15% Similarity=0.122 Sum_probs=62.7
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH---
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA--- 398 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a--- 398 (488)
..+++|+.+.+ ...+.+.+.....|. .|.... +.++....+.. .|+++.-. ..+.-|..+++.+.
T Consensus 3 ~~~ILivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~ 73 (155)
T 1qkk_A 3 APSVFLIDDDR-----DLRKAMQQTLELAGF--TVSSFA--SATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALD 73 (155)
T ss_dssp -CEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEES--CHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred CCEEEEEeCCH-----HHHHHHHHHHHHcCc--EEEEEC--CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 45677777654 555777777777664 344433 33666665544 46555443 33334555555543
Q ss_pred cCCcEEEeCCCCCc---cceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 AGLIMIAHKSGGPK---MDIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 ~G~PvI~~~~~~~~---~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.++|||........ .+.+..+ ..+++.. +.+++.+++..++.
T Consensus 74 ~~~pii~ls~~~~~~~~~~~~~~g----~~~~l~kP~~~~~L~~~i~~~~~ 120 (155)
T 1qkk_A 74 PDLPMILVTGHGDIPMAVQAIQDG----AYDFIAKPFAADRLVQSARRAEE 120 (155)
T ss_dssp TTSCEEEEECGGGHHHHHHHHHTT----CCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHhcC----CCeEEeCCCCHHHHHHHHHHHHH
Confidence 37888874332221 1233333 5567765 89999999999886
No 84
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=70.33 E-value=25 Score=27.20 Aligned_cols=109 Identities=6% Similarity=-0.010 Sum_probs=60.1
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh---CcEEEEcC-CCCcCCccHHHHHH--
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE---GLIGLHAM-WNEHFGIGIVECMA-- 398 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~---ad~~v~~s-~~e~~g~~~lEa~a-- 398 (488)
..+++|+.+.+ ...+.+.+..+. + -.|.... +.++....+.. .|+++.-. ..+.-|..+++.+.
T Consensus 4 ~~~ILivdd~~-----~~~~~l~~~L~~-~--~~v~~~~--~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 73 (151)
T 3kcn_A 4 NERILLVDDDY-----SLLNTLKRNLSF-D--FEVTTCE--SGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLI 73 (151)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHTT-T--SEEEEES--SHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEeCCH-----HHHHHHHHHhcc-C--ceEEEeC--CHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhc
Confidence 45677887654 445666666643 3 2344443 33676666654 37655543 34444556665543
Q ss_pred -cCCcEEEeCCCCCccceeccCCCcc-ccceecC--CHHHHHHHHHHHHc
Q psy15555 399 -AGLIMIAHKSGGPKMDIVIEDPETC-RNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 -~G~PvI~~~~~~~~~eiv~~~~~~~-~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..+|||........+...+.. ..+ ..+++.. +.+++.++|..++.
T Consensus 74 ~~~~~ii~~s~~~~~~~~~~~~-~~g~~~~~l~KP~~~~~L~~~i~~~l~ 122 (151)
T 3kcn_A 74 SPNSVYLMLTGNQDLTTAMEAV-NEGQVFRFLNKPCQMSDIKAAINAGIK 122 (151)
T ss_dssp CSSCEEEEEECGGGHHHHHHHH-HHTCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCHHHHHHHH-HcCCeeEEEcCCCCHHHHHHHHHHHHH
Confidence 367877643322211222111 011 2356655 89999999999987
No 85
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=70.05 E-value=13 Score=28.44 Aligned_cols=107 Identities=7% Similarity=0.093 Sum_probs=62.8
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHHc--
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMAA-- 399 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a~-- 399 (488)
..+++|+.+.+ ...+.+....+..|. .|.... +..+....+.. .|+++.-. ..+.-|..+++.+..
T Consensus 4 ~~~Ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~ 74 (136)
T 2qzj_A 4 QTKILIIDGDK-----DNCQKLKGFLEEKGI--SIDLAY--NCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVT 74 (136)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHHTTTC--EEEEES--SHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTC
T ss_pred CCeEEEEcCCH-----HHHHHHHHHHHHCCC--EEEEEC--CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCC
Confidence 45777887654 555677777776553 344333 33666666554 46655433 223345666666543
Q ss_pred CCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 GLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.+|+|........+ +.++.+ ..+++.. +.+++.+++..++.
T Consensus 75 ~~~ii~ls~~~~~~~~~~~~~~g----a~~~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 75 TCPIVYMTYINEDQSILNALNSG----GDDYLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp CCCEEEEESCCCHHHHHHHHHTT----CCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCHHHHHHHHHcC----CcEEEECCCCHHHHHHHHHHHHH
Confidence 57877643322211 233344 5677765 89999999988775
No 86
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=69.87 E-value=17 Score=28.25 Aligned_cols=109 Identities=10% Similarity=0.076 Sum_probs=59.6
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHHc--
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMAA-- 399 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a~-- 399 (488)
..+++|+.+.+ ...+.+.+..+..+-...+.... +.++....+.. .|+++.-. ..+.-|..+++.+..
T Consensus 20 m~~iLivdd~~-----~~~~~l~~~L~~~~~~~~v~~~~--~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~ 92 (150)
T 4e7p_A 20 HMKVLVAEDQS-----MLRDAMCQLLTLQPDVESVLQAK--NGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEK 92 (150)
T ss_dssp CEEEEEECSCH-----HHHHHHHHHHHTSTTEEEEEEES--SHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTT
T ss_pred ccEEEEEcCCH-----HHHHHHHHHHHhCCCcEEEEEEC--CHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhC
Confidence 45666776543 44456666665543111233333 33666666654 35555443 333445556655443
Q ss_pred -CCcEEEeCCCCCc---cceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 -GLIMIAHKSGGPK---MDIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 -G~PvI~~~~~~~~---~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.+|||........ .+..+.+ ..+++.. +.+++.++|.+++.
T Consensus 93 ~~~~ii~ls~~~~~~~~~~~~~~g----~~~~l~Kp~~~~~l~~~i~~~~~ 139 (150)
T 4e7p_A 93 LETKVVVVTTFKRAGYFERAVKAG----VDAYVLKERSIADLMQTLHTVLE 139 (150)
T ss_dssp CSCEEEEEESCCCHHHHHHHHHTT----CSEEEETTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEeCCCCHHHHHHHHHCC----CcEEEecCCCHHHHHHHHHHHHc
Confidence 6777764332221 1233444 5567765 89999999999886
No 87
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=69.40 E-value=25 Score=26.62 Aligned_cols=107 Identities=12% Similarity=0.084 Sum_probs=63.9
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH---
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA--- 398 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a--- 398 (488)
..++.|+.+.+ ...+.+....++.|. .|.... +.++..+.+.. .|+++.-. ..+.-|..+++.+.
T Consensus 4 ~~~iLivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~ 74 (136)
T 3t6k_A 4 PHTLLIVDDDD-----TVAEMLELVLRGAGY--EVRRAA--SGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHP 74 (136)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEES--SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSG
T ss_pred CCEEEEEeCCH-----HHHHHHHHHHHHCCC--EEEEeC--CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCC
Confidence 45677777654 555677777777664 344333 33666666654 46555543 33444666666654
Q ss_pred --cCCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 --AGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 --~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..+|+|.....+... +..+.+ ..+++.+ +.+++.+++.+++.
T Consensus 75 ~~~~~pii~~t~~~~~~~~~~~~~~g----a~~~l~KP~~~~~L~~~i~~~l~ 123 (136)
T 3t6k_A 75 LTKTLPILMLTAQGDISAKIAGFEAG----ANDYLAKPFEPQELVYRVKNILA 123 (136)
T ss_dssp GGTTCCEEEEECTTCHHHHHHHHHHT----CSEEEETTCCHHHHHHHHHHHHH
T ss_pred CcCCccEEEEecCCCHHHHHHHHhcC----cceEEeCCCCHHHHHHHHHHHHh
Confidence 267888744332221 223334 5667765 89999999999886
No 88
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=69.06 E-value=30 Score=25.59 Aligned_cols=107 Identities=7% Similarity=0.094 Sum_probs=63.3
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH---
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA--- 398 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a--- 398 (488)
+.++.++.+.+ ...+.++...+..|. .+.... +..+....+.. .|+++.-. ..+.-|..+++.+.
T Consensus 3 ~~~ilivdd~~-----~~~~~l~~~l~~~~~--~v~~~~--~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 73 (126)
T 1dbw_A 3 DYTVHIVDDEE-----PVRKSLAFMLTMNGF--AVKMHQ--SAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLK 73 (126)
T ss_dssp CCEEEEEESSH-----HHHHHHHHHHHHTTC--EEEEES--CHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTT
T ss_pred CCEEEEEcCCH-----HHHHHHHHHHHhCCc--EEEEeC--CHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcC
Confidence 45677887664 555777777776654 344333 34666666665 46555433 22334555665553
Q ss_pred cCCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 AGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 ~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..+|+|........+ +..+.+ ..+++.+ +.+++.+++.+++.
T Consensus 74 ~~~~ii~~s~~~~~~~~~~~~~~g----a~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 74 INIPSIVITGHGDVPMAVEAMKAG----AVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp CCCCEEEEECTTCHHHHHHHHHTT----CSEEEESSCCHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCHHHHHHHHHhC----HHHheeCCCCHHHHHHHHHHHHH
Confidence 367887743322211 233344 5677765 89999999988875
No 89
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=68.95 E-value=22 Score=27.78 Aligned_cols=107 Identities=9% Similarity=0.083 Sum_probs=66.6
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH---
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA--- 398 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a--- 398 (488)
..+++|+.+.+ ...+.+++..++.|. .|.... +.++....+.. .|+++.-. ..+.-|..+++.+.
T Consensus 7 ~~~ILivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 7 AGEILIVEDSP-----TQAEHLKHILEETGY--QTEHVR--NGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQP 77 (154)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHHTTTC--EEEEES--SHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred CCcEEEEeCCH-----HHHHHHHHHHHHCCC--EEEEeC--CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 56778887654 566778888877664 344444 33677777665 46555543 34445667777664
Q ss_pred --cCCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 --AGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 --~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..+|||........+ +.++.+ ..+++.. +.+++.+++.+++.
T Consensus 78 ~~~~~pii~~s~~~~~~~~~~~~~~g----~~~~l~KP~~~~~l~~~i~~~l~ 126 (154)
T 3gt7_A 78 DLRTIPVILLTILSDPRDVVRSLECG----ADDFITKPCKDVVLASHVKRLLS 126 (154)
T ss_dssp TTTTSCEEEEECCCSHHHHHHHHHHC----CSEEEESSCCHHHHHHHHHHHHH
T ss_pred CcCCCCEEEEECCCChHHHHHHHHCC----CCEEEeCCCCHHHHHHHHHHHHH
Confidence 467888743322221 223333 5567765 89999999998886
No 90
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=68.95 E-value=20 Score=25.90 Aligned_cols=105 Identities=8% Similarity=0.076 Sum_probs=59.3
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH-----
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA----- 398 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a----- 398 (488)
+++++.+.+ ...+.+.+..+..|. .+..... .++....+.. .|+++.-. ..+.-|..+++.+.
T Consensus 3 ~iliv~~~~-----~~~~~l~~~l~~~g~--~v~~~~~--~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~ 73 (119)
T 2j48_A 3 HILLLEEED-----EAATVVCEMLTAAGF--KVIWLVD--GSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQAD 73 (119)
T ss_dssp EEEEECCCH-----HHHHHHHHHHHHTTC--EEEEESC--HHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCC
T ss_pred EEEEEeCCH-----HHHHHHHHHHHhCCc--EEEEecC--HHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcccc
Confidence 456666553 555777777777664 3544443 3566555554 56555433 33334566677665
Q ss_pred cCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 AGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 ~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.++|+|.........+....+ ..+++.. +.+++.+.+..++.
T Consensus 74 ~~~~ii~~~~~~~~~~~~~~g----~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 74 PHPPLVLFLGEPPVDPLLTAQ----ASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp SSCCCEEEESSCCSSHHHHHH----CSEECSSCSTTHHHHHHHHTTCC
T ss_pred CCCCEEEEeCCCCchhhhhcC----HHHhccCCCCHHHHHHHHHHHhc
Confidence 467877643322221333333 4456654 78889888877654
No 91
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=68.44 E-value=34 Score=25.44 Aligned_cols=108 Identities=5% Similarity=0.025 Sum_probs=63.1
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh---CcEEEEcC-CCC-cCCccHHHHHH-
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE---GLIGLHAM-WNE-HFGIGIVECMA- 398 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~---ad~~v~~s-~~e-~~g~~~lEa~a- 398 (488)
..+++|+.+.+ ...+.+.+..+..|. .+.... +.++....+.. .|+++.-. ..+ .-|..+++.+.
T Consensus 5 ~~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~ 75 (132)
T 2rdm_A 5 AVTILLADDEA-----ILLLDFESTLTDAGF--LVTAVS--SGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVARE 75 (132)
T ss_dssp SCEEEEECSSH-----HHHHHHHHHHHHTTC--EEEEES--SHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHH
T ss_pred CceEEEEcCcH-----HHHHHHHHHHHHcCC--EEEEEC--CHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHh
Confidence 46778887664 555777777777664 344433 34677777664 47655543 332 34555665554
Q ss_pred --cCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 --AGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 --~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..+|+|........ +..... .. ..+++.. +.+++.+++.+++.
T Consensus 76 ~~~~~~ii~~s~~~~~-~~~~~~-~~-~~~~l~kP~~~~~l~~~i~~~~~ 122 (132)
T 2rdm_A 76 IDPNMPIVYISGHAAL-EWASNG-VP-DSIILEKPFTSAQLITAVSQLLN 122 (132)
T ss_dssp HCTTCCEEEEESSCCT-THHHHS-CT-TCEEEESSCCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCccH-HHHHhh-cC-CcceEeCCCCHHHHHHHHHHHHh
Confidence 36788774333222 222222 11 1246655 89999999998876
No 92
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=67.64 E-value=30 Score=26.02 Aligned_cols=107 Identities=11% Similarity=0.068 Sum_probs=65.6
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh---CcEEEEcC-CCCcCCccHHHHHHc-
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE---GLIGLHAM-WNEHFGIGIVECMAA- 399 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~---ad~~v~~s-~~e~~g~~~lEa~a~- 399 (488)
..+++|+.+.+ ...+.+++..++.|. .+..... .++....+.. .|+++.-. ..+.-|..+++.+..
T Consensus 7 ~~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~~--~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 77 (136)
T 3hdv_A 7 RPLVLVVDDNA-----VNREALILYLKSRGI--DAVGADG--AEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRAS 77 (136)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHHHTTC--CEEEESS--HHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTS
T ss_pred CCeEEEECCCH-----HHHHHHHHHHHHcCc--eEEEeCC--HHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhc
Confidence 56778888664 566778888887764 3544433 3565555543 46555543 334456677776653
Q ss_pred ---CCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 ---GLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 ---G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.+|+|........+ +..+.+ ..+++.. +.+++.++|.++..
T Consensus 78 ~~~~~~ii~~s~~~~~~~~~~~~~~g----~~~~l~KP~~~~~l~~~i~~~~~ 126 (136)
T 3hdv_A 78 ERAALSIIVVSGDTDVEEAVDVMHLG----VVDFLLKPVDLGKLLELVNKELK 126 (136)
T ss_dssp TTTTCEEEEEESSCCHHHHHHHHHTT----CSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEeCCCChHHHHHHHhCC----cceEEeCCCCHHHHHHHHHHHhc
Confidence 47887744332221 233333 5567765 99999999999887
No 93
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=67.35 E-value=21 Score=27.72 Aligned_cols=110 Identities=7% Similarity=-0.013 Sum_probs=61.1
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH--
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA-- 398 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a-- 398 (488)
+..+++|+.+.+ ...+.+++..++.+....+.... +.++....+.. .|+++.-. ..+.-|..+++.+.
T Consensus 14 ~~~~iLivdd~~-----~~~~~l~~~L~~~~~~~~v~~~~--~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 86 (152)
T 3eul_A 14 EKVRVVVGDDHP-----LFREGVVRALSLSGSVNVVGEAD--DGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSY 86 (152)
T ss_dssp CCEEEEEECSSH-----HHHHHHHHHHHHHSSEEEEEEES--SHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHT
T ss_pred ceEEEEEEcCCH-----HHHHHHHHHHhhCCCeEEEEEeC--CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 456777777654 44566666666655211122222 23555555533 56555433 33444555665554
Q ss_pred -cCCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 -AGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 -~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..+|||........+ +.++.+ ..+++.. +.+++.+++.+++.
T Consensus 87 ~~~~~ii~~s~~~~~~~~~~~~~~g----~~~~l~Kp~~~~~l~~~i~~~~~ 134 (152)
T 3eul_A 87 ELPTRVLLISAHDEPAIVYQALQQG----AAGFLLKDSTRTEIVKAVLDCAK 134 (152)
T ss_dssp TCSCEEEEEESCCCHHHHHHHHHTT----CSEEEETTCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEccCCHHHHHHHHHcC----CCEEEecCCCHHHHHHHHHHHHc
Confidence 357777643322221 233344 5677765 89999999999987
No 94
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=67.01 E-value=3.4 Score=34.53 Aligned_cols=73 Identities=18% Similarity=0.059 Sum_probs=41.8
Q ss_pred HHHHHHHhCcEEEEcCCCCcCCc--cHHHHHHcCCcEEEeCCCCCccceeccC--------CCccccceecCCHHHHHHH
Q psy15555 369 DMKKEFSEGLIGLHAMWNEHFGI--GIVECMAAGLIMIAHKSGGPKMDIVIED--------PETCRNGFLACDEVEYAQT 438 (488)
Q Consensus 369 el~~~~~~ad~~v~~s~~e~~g~--~~lEa~a~G~PvI~~~~~~~~~eiv~~~--------~~~~~~g~~~~~~~~l~~~ 438 (488)
.-.-+...||++|... .++|. .+.|++..|+||+.-+..+...+.+... +.....-.+++|++++.+.
T Consensus 111 Rk~~m~~~sda~Ivlp--GG~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~ee~~~~ 188 (195)
T 1rcu_A 111 RSFVLLRNADVVVSIG--GEIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEEAVQI 188 (195)
T ss_dssp HHHHHHTTCSEEEEES--CCHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSHHHHHHH
T ss_pred HHHHHHHhCCEEEEec--CCCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCHHHHHHH
Confidence 4445667899665432 22332 4789999999999997644432222211 0011112335689998888
Q ss_pred HHHHH
Q psy15555 439 IKLIL 443 (488)
Q Consensus 439 i~~ll 443 (488)
|.+++
T Consensus 189 l~~~~ 193 (195)
T 1rcu_A 189 IEQIL 193 (195)
T ss_dssp HHTC-
T ss_pred HHHHh
Confidence 76543
No 95
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=66.95 E-value=29 Score=25.49 Aligned_cols=105 Identities=8% Similarity=0.085 Sum_probs=62.6
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CC-CcCCccHHHHHH---
Q psy15555 326 LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WN-EHFGIGIVECMA--- 398 (488)
Q Consensus 326 ~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~-e~~g~~~lEa~a--- 398 (488)
.++.++.+.+ ...+.+.+..++.|. .+..... .++....+.. .|+++.-. .. +.-|..+++.+.
T Consensus 6 ~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~~--~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~ 76 (127)
T 2gkg_A 6 KKILIVESDT-----ALSATLRSALEGRGF--TVDETTD--GKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDD 76 (127)
T ss_dssp CEEEEECSCH-----HHHHHHHHHHHHHTC--EEEEECC--HHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHST
T ss_pred CeEEEEeCCH-----HHHHHHHHHHHhcCc--eEEEecC--HHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCc
Confidence 3667777653 555777777777664 3444333 3566555553 56555433 33 334566666664
Q ss_pred --cCCcEEEeCCCCCccc---eeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 --AGLIMIAHKSGGPKMD---IVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 --~G~PvI~~~~~~~~~e---iv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..+|+|.. .....+. ..+.+ ..+++.. +.+++.+.+..++.
T Consensus 77 ~~~~~~ii~~-~~~~~~~~~~~~~~g----~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 77 DLKNVPIVII-GNPDGFAQHRKLKAH----ADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp TTTTSCEEEE-ECGGGHHHHHHSTTC----CSEEEESSCCHHHHHHHHHHHHC
T ss_pred cccCCCEEEE-ecCCchhHHHHHHhC----cchheeCCCCHHHHHHHHHHHHc
Confidence 46888887 4332212 23333 4566655 89999999998876
No 96
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=66.88 E-value=33 Score=26.57 Aligned_cols=110 Identities=13% Similarity=0.126 Sum_probs=60.4
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhC--cEEEEcC-CCCcCCccHHHHHH---
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEG--LIGLHAM-WNEHFGIGIVECMA--- 398 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~a--d~~v~~s-~~e~~g~~~lEa~a--- 398 (488)
..+++|+.+.+ ...+.+.+..++.|. .|..... .++....+... |+++.-. ..+.-|..+++.+.
T Consensus 14 ~~~ILivdd~~-----~~~~~l~~~L~~~g~--~v~~~~~--~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 84 (153)
T 3hv2_A 14 RPEILLVDSQE-----VILQRLQQLLSPLPY--TLHFARD--ATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQY 84 (153)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHTTSSC--EEEEESS--HHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred CceEEEECCCH-----HHHHHHHHHhcccCc--EEEEECC--HHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHC
Confidence 35667776553 445666666666553 3443333 36666666543 5555433 33444555655543
Q ss_pred cCCcEEEeCCCCCccceeccCCCcc-ccceecC--CHHHHHHHHHHHHc
Q psy15555 399 AGLIMIAHKSGGPKMDIVIEDPETC-RNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 ~G~PvI~~~~~~~~~eiv~~~~~~~-~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..+|||........+...... ..+ ..+++.. +.++|..+|..++.
T Consensus 85 ~~~~ii~~s~~~~~~~~~~~~-~~g~~~~~l~KP~~~~~l~~~i~~~l~ 132 (153)
T 3hv2_A 85 PSTTRILLTGDPDLKLIAKAI-NEGEIYRYLSKPWDDQELLLALRQALE 132 (153)
T ss_dssp TTSEEEEECCCCCHHHHHHHH-HTTCCSEEECSSCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCHHHHHHHH-hCCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 467888754433321222111 011 2456655 89999999999886
No 97
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=66.54 E-value=26 Score=27.19 Aligned_cols=108 Identities=12% Similarity=0.045 Sum_probs=62.2
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhc-CCCCcEEEecCCChHHHHHHHHh---CcEEEEcC-CCCcCCccHHHHHH-
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHL-SLENNVEFKVNLPYEDMKKEFSE---GLIGLHAM-WNEHFGIGIVECMA- 398 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~-~l~~~v~~~g~~~~~el~~~~~~---ad~~v~~s-~~e~~g~~~lEa~a- 398 (488)
..+++|+.+.+ ...+.++...++. |. ..+..... .++....+.. .|+++.-. ..+.-|..+++.+.
T Consensus 3 ~~~iLivdd~~-----~~~~~l~~~L~~~~g~-~~v~~~~~--~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~ 74 (154)
T 2qsj_A 3 LTVVLIVDDHH-----LIRAGAKNLLEGAFSG-MRVEGAET--VSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKR 74 (154)
T ss_dssp CEEEEEECSCH-----HHHHHHHHHHHHHCTT-EEEEEESS--HHHHHHHHHTTCCCSEEEECC------CHHHHHHHHH
T ss_pred ccEEEEEcCCH-----HHHHHHHHHHHhCCCc-eEEEEecC--HHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHH
Confidence 45777787654 5567777777776 42 13444443 3777777766 57666543 23334666666554
Q ss_pred --cCCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 --AGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 --~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.++|||........+ +.+..+ ..+++.. +.+++.+++..++.
T Consensus 75 ~~~~~~ii~ls~~~~~~~~~~~~~~g----~~~~l~kp~~~~~L~~~l~~~~~ 123 (154)
T 2qsj_A 75 FDPSNAVALISGETDHELIRAALEAG----ADGFIPKSADPQVLIHAVSLILE 123 (154)
T ss_dssp HCTTSEEEEC-----CHHHHHHHHTT----CCBBCCTTSCHHHHHHHHHHHHT
T ss_pred hCCCCeEEEEeCCCCHHHHHHHHHcc----CCEEEeCCCCHHHHHHHHHHHHc
Confidence 378888743322211 223333 5566655 89999999999887
No 98
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=66.53 E-value=31 Score=25.47 Aligned_cols=105 Identities=12% Similarity=0.085 Sum_probs=61.1
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH-----
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA----- 398 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a----- 398 (488)
++.++.+.+ ...+.+....+..|. .+.... +.++..+.+.. .|+++.-. ..+.-|..+++.+.
T Consensus 4 ~ILivdd~~-----~~~~~l~~~l~~~g~--~v~~~~--~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~ 74 (122)
T 3gl9_A 4 KVLLVDDSA-----VLRKIVSFNLKKEGY--EVIEAE--NGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEW 74 (122)
T ss_dssp EEEEECSCH-----HHHHHHHHHHHHTTC--EEEEES--SHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTT
T ss_pred eEEEEeCCH-----HHHHHHHHHHHHCCc--EEEEeC--CHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccc
Confidence 456666553 445667777776663 344333 33666666654 45555543 33444667777663
Q ss_pred cCCcEEEeCCCCCccc---eeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 AGLIMIAHKSGGPKMD---IVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 ~G~PvI~~~~~~~~~e---iv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..+|||.....+..+. ..+.+ ..+++.+ +.+++.+++.++++
T Consensus 75 ~~~pii~~s~~~~~~~~~~~~~~G----a~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 75 KRIPVIVLTAKGGEEDESLALSLG----ARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp TTSCEEEEESCCSHHHHHHHHHTT----CSEEEESSCCHHHHHHHHHHHHC
T ss_pred cCCCEEEEecCCchHHHHHHHhcC----hhhhccCCCCHHHHHHHHHHHhc
Confidence 3578876433222212 23333 5667765 89999999998874
No 99
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=65.95 E-value=38 Score=25.04 Aligned_cols=108 Identities=14% Similarity=0.190 Sum_probs=63.2
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHHc--
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMAA-- 399 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a~-- 399 (488)
..++.++.+.+ ...+.++...+..|.. .+..... ..+....+.. .|+++.-. ..+.-|..+++.+..
T Consensus 4 ~~~ilivdd~~-----~~~~~l~~~l~~~~~~-~v~~~~~--~~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~ 75 (128)
T 1jbe_A 4 ELKFLVVDDFS-----TMRRIVRNLLKELGFN-NVEEAED--GVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXX 75 (128)
T ss_dssp TCCEEEECSCH-----HHHHHHHHHHHHTTCC-CEEEESS--HHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--
T ss_pred ccEEEEECCCH-----HHHHHHHHHHHHcCCc-EEEeeCC--HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 45677787654 5556777777776642 3444443 3566666654 46555443 333446677777654
Q ss_pred ---CCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 ---GLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 ---G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.+|+|........+ +..+.+ ..+++.. +.+++.+++.+++.
T Consensus 76 ~~~~~~ii~~s~~~~~~~~~~~~~~g----a~~~l~KP~~~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 76 AMSALPVLMVTAEAKKENIIAAAQAG----ASGYVVKPFTAATLEEKLNKIFE 124 (128)
T ss_dssp CCTTCCEEEEESSCCHHHHHHHHHTT----CSEEEESSCCHHHHHHHHHHHHH
T ss_pred ccCCCcEEEEecCccHHHHHHHHHhC----cCceeecCCCHHHHHHHHHHHHH
Confidence 56777643322221 223333 5567765 89999999888764
No 100
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=65.61 E-value=38 Score=24.99 Aligned_cols=107 Identities=10% Similarity=0.085 Sum_probs=63.7
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH---
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA--- 398 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a--- 398 (488)
..+++|+.+.+ ...+.+++..++.|. .|.... +.++....+.. .|+++.-. ..+.-|..+++.+.
T Consensus 3 ~~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~ 73 (127)
T 3i42_A 3 LQQALIVEDYQ-----AAAETFKELLEMLGF--QADYVM--SGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALP 73 (127)
T ss_dssp CEEEEEECSCH-----HHHHHHHHHHHHTTE--EEEEES--SHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSC
T ss_pred cceEEEEcCCH-----HHHHHHHHHHHHcCC--CEEEEC--CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 35677777654 556778888887764 344444 34677777665 45555433 44445666766654
Q ss_pred --cCCcEEEeCCCCCc--cceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 --AGLIMIAHKSGGPK--MDIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 --~G~PvI~~~~~~~~--~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..+|+|........ .+....+ ..+++.. +.++|.+++.....
T Consensus 74 ~~~~~~ii~~s~~~~~~~~~~~~~g----~~~~l~KP~~~~~L~~~i~~~~~ 121 (127)
T 3i42_A 74 MEKTSKFVAVSGFAKNDLGKEACEL----FDFYLEKPIDIASLEPILQSIEG 121 (127)
T ss_dssp CSSCCEEEEEECC-CTTCCHHHHHH----CSEEEESSCCHHHHHHHHHHHC-
T ss_pred ccCCCCEEEEECCcchhHHHHHHHh----hHHheeCCCCHHHHHHHHHHhhc
Confidence 35788874332222 1223333 4566665 99999999998775
No 101
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=65.15 E-value=42 Score=25.27 Aligned_cols=107 Identities=7% Similarity=-0.033 Sum_probs=64.0
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh---CcEEEEcC-CCCcCCccHHHHHHc
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE---GLIGLHAM-WNEHFGIGIVECMAA 399 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~---ad~~v~~s-~~e~~g~~~lEa~a~ 399 (488)
+..+++++.+.+ ...+.+.+..+..|. .+..... .++....+.. .|+++.-. ..+.-|..+++.+..
T Consensus 14 ~~~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~~--~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~ 84 (138)
T 2b4a_A 14 QPFRVTLVEDEP-----SHATLIQYHLNQLGA--EVTVHPS--GSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKE 84 (138)
T ss_dssp CCCEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEESS--HHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTT
T ss_pred CCCeEEEECCCH-----HHHHHHHHHHHHcCC--EEEEeCC--HHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 567888888664 555777777777664 3544443 3666666654 57665543 333345667776653
Q ss_pred ---CCcEEEeC-CCCCccceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 ---GLIMIAHK-SGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 ---G~PvI~~~-~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.+|+|... ..... +. ... . ..+++.. +.+++.+.+..++.
T Consensus 85 ~~~~~~ii~ls~~~~~~-~~-~~~-~--~~~~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 85 QTKQPSVLILTTGRHEL-IE-SSE-H--NLSYLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp SSSCCEEEEEESCC--C-CC-CSS-S--CEEEEESSCCHHHHHHHHHHTCC
T ss_pred hCCCCCEEEEECCCCCH-HH-HHH-H--HHheeeCCCCHHHHHHHHHHHHH
Confidence 67887753 32222 22 222 1 2456654 89999999998876
No 102
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=65.10 E-value=37 Score=26.12 Aligned_cols=109 Identities=11% Similarity=0.148 Sum_probs=66.5
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH--
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA-- 398 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a-- 398 (488)
.++++.||-+.+ ...+.+++..++.|.. .+.... +..+..+.++. -|+++.-- ..+.-|..+++.+-
T Consensus 11 k~~rILiVDD~~-----~~r~~l~~~L~~~G~~-~v~~a~--~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~ 82 (134)
T 3to5_A 11 KNMKILIVDDFS-----TMRRIVKNLLRDLGFN-NTQEAD--DGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRAD 82 (134)
T ss_dssp TTCCEEEECSCH-----HHHHHHHHHHHHTTCC-CEEEES--SHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHS
T ss_pred CCCEEEEEeCCH-----HHHHHHHHHHHHcCCc-EEEEEC--CHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhC
Confidence 356788887654 4557777888887753 343333 23555555555 45555433 33444677777664
Q ss_pred ---cCCcEEEeCCCCCccce---eccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 ---AGLIMIAHKSGGPKMDI---VIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 ---~G~PvI~~~~~~~~~ei---v~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..+|||.-...+..++. .+.| ..+++.+ ++++|.+++.+++.
T Consensus 83 ~~~~~ipvI~lTa~~~~~~~~~~~~~G----a~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 83 EELKHLPVLMITAEAKREQIIEAAQAG----VNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp TTTTTCCEEEEESSCCHHHHHHHHHTT----CCEEEESSCCHHHHHHHHHHHCC
T ss_pred CCCCCCeEEEEECCCCHHHHHHHHHCC----CCEEEECCCCHHHHHHHHHHHHh
Confidence 46888874433332222 3333 6678876 99999999998874
No 103
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=65.08 E-value=52 Score=26.33 Aligned_cols=37 Identities=8% Similarity=-0.063 Sum_probs=23.8
Q ss_pred HHHHHhCcEEEEcCC--C--CcCCccHHH---HHHcCCcEEEeC
Q psy15555 371 KKEFSEGLIGLHAMW--N--EHFGIGIVE---CMAAGLIMIAHK 407 (488)
Q Consensus 371 ~~~~~~ad~~v~~s~--~--e~~g~~~lE---a~a~G~PvI~~~ 407 (488)
.+.+..||++|.--. . +.=+-+..| |.+.|+|||+-.
T Consensus 62 ~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~ 105 (161)
T 2f62_A 62 IQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFT 105 (161)
T ss_dssp HHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 578999997654311 1 111225566 788999999954
No 104
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=64.93 E-value=42 Score=25.28 Aligned_cols=108 Identities=12% Similarity=0.146 Sum_probs=64.8
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHh-cCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHHc-
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKH-LSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMAA- 399 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~-~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a~- 399 (488)
..+++|+.+.+ ...+.+.+..+. .|.. .+...... ++....+.. .|+++.-. ..+.-|..+++.+..
T Consensus 8 ~~~iLivdd~~-----~~~~~l~~~L~~~~~~~-~v~~~~~~--~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 79 (143)
T 3cnb_A 8 DFSILIIEDDK-----EFADMLTQFLENLFPYA-KIKIAYNP--FDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKST 79 (143)
T ss_dssp -CEEEEECSCH-----HHHHHHHHHHHHHCTTC-EEEEECSH--HHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCH-----HHHHHHHHHHHhccCcc-EEEEECCH--HHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhC
Confidence 56778887654 556777777777 5642 24444443 666666655 46555543 334445667776654
Q ss_pred ----CCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 ----GLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 ----G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
++|||......... +..+.+ ..+++.. +.+++.+++..++.
T Consensus 80 ~~~~~~~ii~~s~~~~~~~~~~~~~~g----~~~~l~kP~~~~~l~~~i~~~~~ 129 (143)
T 3cnb_A 80 PATANIIVIAMTGALTDDNVSRIVALG----AETCFGKPLNFTLLEKTIKQLVE 129 (143)
T ss_dssp TTTTTSEEEEEESSCCHHHHHHHHHTT----CSEEEESSCCHHHHHHHHHHHHH
T ss_pred ccccCCcEEEEeCCCCHHHHHHHHhcC----CcEEEeCCCCHHHHHHHHHHHHH
Confidence 67887643322221 233333 5567765 89999999998886
No 105
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=64.27 E-value=79 Score=28.13 Aligned_cols=155 Identities=9% Similarity=0.061 Sum_probs=77.5
Q ss_pred HHHhcccCEEEEcChhHHHHHHHHhccCCceEEEcCCCC-chhhhccCCCCCCCCeEEEEeeccCCCCChHHHHHHHHHh
Q psy15555 236 SHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCD-TEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQL 314 (488)
Q Consensus 236 ~~~~~~~d~ii~~s~~~~~~~~~~~~~~~k~~vi~~~~d-~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~ll~a~~~l 314 (488)
+..-.+.|.|++.+....+.+..... ++-++..++. +............+. .+..+. ..-.+...++.+.++
T Consensus 64 ~l~~~~~DlIiai~t~aa~a~~~~~~---~iPVVf~~v~dp~~~~l~~~~~~~g~-nvtGv~---~~~~~~~~l~l~~~l 136 (302)
T 3lkv_A 64 QFVGENPDVLVGIATPTAQALVSATK---TIPIVFTAVTDPVGAKLVKQLEQPGK-NVTGLS---DLSPVEQHVELIKEI 136 (302)
T ss_dssp HHHTTCCSEEEEESHHHHHHHHHHCS---SSCEEEEEESCTTTTTSCSCSSSCCS-SEEEEE---CCCCHHHHHHHHHHH
T ss_pred HHHhcCCcEEEEcCCHHHHHHHhhcC---CCCeEEEecCCcchhhhcccccCCCC-cEEEEE---CCcCHHHHHHHHHHh
Confidence 34557899999998877776665432 2222222221 111111111111122 222222 223455666666666
Q ss_pred HHhhhhhccCceE-EEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHH----HhCcEEEEcCCCC--
Q psy15555 315 RQIISEELWDNLK-LIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEF----SEGLIGLHAMWNE-- 387 (488)
Q Consensus 315 ~~~~~~~~~~~~~-l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~----~~ad~~v~~s~~e-- 387 (488)
. |+.+ +.++++..........+.+++.+++.|+. +......+.+++.+.+ ...|++..+....
T Consensus 137 ~--------P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~l~~~~d~i~~~~d~~~~ 206 (302)
T 3lkv_A 137 L--------PNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIK--LVEATALKSADVQSATQAIAEKSDVIYALIDNTVA 206 (302)
T ss_dssp S--------TTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCE--EEEEECSSGGGHHHHHHHHHTTCSEEEECSCHHHH
T ss_pred C--------CCCCEEEEEeCCCcccHHHHHHHHHHHHHHcCCE--EEEEecCChHHHHHHHHhccCCeeEEEEeCCcchh
Confidence 4 4443 44555433222334557788888888863 4444444445555444 5677666554211
Q ss_pred -cCCccHHHHHHcCCcEEEeC
Q psy15555 388 -HFGIGIVECMAAGLIMIAHK 407 (488)
Q Consensus 388 -~~g~~~lEa~a~G~PvI~~~ 407 (488)
.......-+...++||++..
T Consensus 207 ~~~~~i~~~~~~~~iPv~~~~ 227 (302)
T 3lkv_A 207 SAIEGMIVAANQAKTPVFGAA 227 (302)
T ss_dssp HTHHHHHHHHHHTTCCEEESS
T ss_pred hHHHHHHHHHhhcCCceeecc
Confidence 11112234667899999764
No 106
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=64.04 E-value=30 Score=26.81 Aligned_cols=111 Identities=13% Similarity=0.102 Sum_probs=63.3
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH--
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA-- 398 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a-- 398 (488)
...+++|+.+.+ ...+.+.+..+..|. .|..... ..+....+.. .|+++.-. ..+.-|..+++.+.
T Consensus 6 ~~~~iLivdd~~-----~~~~~l~~~L~~~g~--~v~~~~~--~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 76 (154)
T 2rjn_A 6 KNYTVMLVDDEQ-----PILNSLKRLIKRLGC--NIITFTS--PLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKS 76 (154)
T ss_dssp SCCEEEEECSCH-----HHHHHHHHHHHTTTC--EEEEESC--HHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHH
T ss_pred CCCeEEEEcCCH-----HHHHHHHHHHHHcCC--eEEEeCC--HHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHh
Confidence 356778887654 556777777777654 3444443 3677777665 46555543 33334555555553
Q ss_pred -cCCcEEEeCCCCCccceeccCCCcc-ccceecC--CHHHHHHHHHHHHc
Q psy15555 399 -AGLIMIAHKSGGPKMDIVIEDPETC-RNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 -~G~PvI~~~~~~~~~eiv~~~~~~~-~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..+|||.-............. ..+ ..+++.. +.+++.++|..++.
T Consensus 77 ~~~~~ii~ls~~~~~~~~~~~~-~~g~~~~~l~kP~~~~~L~~~i~~~~~ 125 (154)
T 2rjn_A 77 YPDIERVVISGYADAQATIDAV-NRGKISRFLLKPWEDEDVFKVVEKGLQ 125 (154)
T ss_dssp CTTSEEEEEECGGGHHHHHHHH-HTTCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCcEEEEecCCCHHHHHHHH-hccchheeeeCCCCHHHHHHHHHHHHH
Confidence 378887743322211211111 000 2456655 89999999999886
No 107
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=63.99 E-value=45 Score=25.21 Aligned_cols=106 Identities=8% Similarity=0.031 Sum_probs=61.3
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcCC-CCcCCccHHHHHH----
Q psy15555 326 LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAMW-NEHFGIGIVECMA---- 398 (488)
Q Consensus 326 ~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s~-~e~~g~~~lEa~a---- 398 (488)
.+++|+.+.+ ...+.+....+..|. .+..... ..+....+.. .|+++.-.. .+.-|..+++.+.
T Consensus 11 ~~iLivdd~~-----~~~~~l~~~L~~~~~--~v~~~~~--~~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~ 81 (140)
T 3c97_A 11 LSVLIAEDND-----ICRLVAAKALEKCTN--DITVVTN--GLQALQAYQNRQFDVIIMDIQMPVMDGLEAVSEIRNYER 81 (140)
T ss_dssp CEEEEECCCH-----HHHHHHHHHHTTTCS--EEEEESS--HHHHHHHHHHSCCSEEEECTTCCSSCHHHHHHHHHHHHH
T ss_pred ceEEEEcCCH-----HHHHHHHHHHHHcCC--ceEEECC--HHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhhhh
Confidence 4677777654 455666666665543 3554443 3666666654 566665443 2334566666554
Q ss_pred ----cCCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 ----AGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 ----~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
...|+|..............+ ..+++.. +.+++.+++..++.
T Consensus 82 ~~~~~~~~ii~~s~~~~~~~~~~~g----~~~~l~KP~~~~~L~~~i~~~~~ 129 (140)
T 3c97_A 82 THNTKRASIIAITADTIDDDRPGAE----LDEYVSKPLNPNQLRDVVLTCHS 129 (140)
T ss_dssp HHTCCCCCCEEEESSCCSCCCCCSS----CSEEEESSCCHHHHHHHHHHHHC
T ss_pred hcCCCceEEEEEeCccchhHHHhCC----hhheEeCCCCHHHHHHHHHHHhC
Confidence 356666643322221223333 4567765 89999999998886
No 108
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=63.71 E-value=44 Score=30.26 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=23.8
Q ss_pred ccccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCC
Q psy15555 50 NVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDV 95 (488)
Q Consensus 50 ~~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~ 95 (488)
+..|||+|+ |....+....++|.+. +++|+.+.+.+
T Consensus 2 ~~mmrIvf~--------Gtp~fa~~~L~~L~~~--~~~v~~Vvt~p 37 (317)
T 3rfo_A 2 NAMIKVVFM--------GTPDFSVPVLRRLIED--GYDVIGVVTQP 37 (317)
T ss_dssp CTTSEEEEE--------CCSTTHHHHHHHHHHT--TCEEEEEECCC
T ss_pred CCceEEEEE--------eCCHHHHHHHHHHHHC--CCcEEEEEeCC
Confidence 456899997 4555666777888887 45555544443
No 109
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=63.56 E-value=45 Score=25.14 Aligned_cols=105 Identities=10% Similarity=0.055 Sum_probs=57.3
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH----
Q psy15555 326 LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA---- 398 (488)
Q Consensus 326 ~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a---- 398 (488)
.+++|+.+.+ ...+.+.+..++. ..+.... +.++....+.. .|+++.-. ..+.-|..+++.+.
T Consensus 4 ~~iLivdd~~-----~~~~~l~~~l~~~---~~v~~~~--~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 73 (140)
T 3n53_A 4 KKILIIDQQD-----FSRIELKNFLDSE---YLVIESK--NEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKG 73 (140)
T ss_dssp CEEEEECSCH-----HHHHHHHHHHTTT---SEEEEES--SHHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTT
T ss_pred CEEEEEeCCH-----HHHHHHHHHHHhc---ceEEEeC--CHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcc
Confidence 4667777653 4456666666543 2344333 33666666544 46555443 34455777777765
Q ss_pred -cCCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 -AGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 -~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.++|+|........+ +..+.+ ..+++.. +.+++.+++..++.
T Consensus 74 ~~~~~ii~~s~~~~~~~~~~~~~~g----~~~~l~KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 74 LKNVPLILLFSSEHKEAIVNGLHSG----ADDYLTKPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp CTTCCEEEEECC----CTTTTTTCC----CSEEEESSCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEecCCCHHHHHHHHhcC----CCeeeeCCCCHHHHHHHHHHHHh
Confidence 467887743322221 223333 5567765 89999999999886
No 110
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=62.98 E-value=57 Score=26.07 Aligned_cols=120 Identities=13% Similarity=0.187 Sum_probs=72.5
Q ss_pred CChHHHHHHHHHhHHhhhhhccCceEEEE---EecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCc
Q psy15555 302 KDHPLQLRAMYQLRQIISEELWDNLKLIF---IGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGL 378 (488)
Q Consensus 302 k~~~~ll~a~~~l~~~~~~~~~~~~~l~i---vG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad 378 (488)
+....+-+..+.|.+++ -++++-| +|+-| -.+.-+..+.+++-.+.+ ..+|+..-+...|
T Consensus 38 qAQ~~v~el~~~L~~~G-----~~V~faIHPVAGRMP--------GhmNVLLAEA~VPYd~v~----EMdeIN~df~~tD 100 (180)
T 1pno_A 38 QAQHALREMADVLKKEG-----VEVSYAIHPVAGRMP--------GHMNVLLAEANVPYDEVF----ELEEINSSFQTAD 100 (180)
T ss_dssp TCHHHHHHHHHHHHHTT-----CEEEEEECTTCTTST--------THHHHHHHHTTCCGGGEE----EHHHHGGGGGGCS
T ss_pred HHHHHHHHHHHHHHHCC-----CeEEEEeccccccCC--------CcceEEEEeeCCCHHHHh----hHHHHhhhhhhcC
Confidence 44555666667777776 7888887 55666 334455566665533222 2378889999999
Q ss_pred E-EEEcC------------CCCcCCccHHHHHHcCCcEEEeCC--C---CCccceeccCCCccccceecCCHHHHHHHHH
Q psy15555 379 I-GLHAM------------WNEHFGIGIVECMAAGLIMIAHKS--G---GPKMDIVIEDPETCRNGFLACDEVEYAQTIK 440 (488)
Q Consensus 379 ~-~v~~s------------~~e~~g~~~lEa~a~G~PvI~~~~--~---~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~ 440 (488)
+ +|.+. ...-+|+.++|..-+..-++.-.. . |....++-.. .+..++.|..+-.+.+.
T Consensus 101 v~lVIGANDvvNpaA~~dp~SpI~GMPvl~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~----nt~MlfGDAK~~~~~l~ 176 (180)
T 1pno_A 101 VAFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFIKRSMASGYAGVENELFFRN----NTMMLFGDAKKMTEQIV 176 (180)
T ss_dssp EEEEESCCGGGCGGGTTCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCCCGGGTST----TEEEEESCHHHHHHHHH
T ss_pred EEEEeccccccCchhccCCCCCcCCCeeechhhCCEEEEEECCCCCCcCCCcCcceecC----CceEEeccHHHHHHHHH
Confidence 4 44432 122378888998888877776333 2 2222333333 45666778777766665
Q ss_pred HH
Q psy15555 441 LI 442 (488)
Q Consensus 441 ~l 442 (488)
..
T Consensus 177 ~~ 178 (180)
T 1pno_A 177 QA 178 (180)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 111
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=62.94 E-value=32 Score=27.28 Aligned_cols=68 Identities=10% Similarity=0.067 Sum_probs=37.6
Q ss_pred HHHHHhCcEEEEcCCCCcCCccHHH---HHHcCCcEEEeCC---CCCccceeccCCCcccc--cee---cCCHHHHHHHH
Q psy15555 371 KKEFSEGLIGLHAMWNEHFGIGIVE---CMAAGLIMIAHKS---GGPKMDIVIEDPETCRN--GFL---ACDEVEYAQTI 439 (488)
Q Consensus 371 ~~~~~~ad~~v~~s~~e~~g~~~lE---a~a~G~PvI~~~~---~~~~~eiv~~~~~~~~~--g~~---~~~~~~l~~~i 439 (488)
.+.+..||++|.--.....| +..| |.+.|+||++-.. +....-.+... .+ -+. +++ +++.+.|
T Consensus 63 ~~~i~~aD~vvA~l~~~d~G-t~~EiG~A~algkPV~~l~~~~~~~~ls~mi~G~----~~~~~~~~~~Y~~-~el~~il 136 (152)
T 4fyk_A 63 LNWLQQADVVVAEVTQPSLG-VGYELGRAVALGKPILCLFRPQSGRVLSAMIRGA----ADGSRFQVWDYAE-GEVETML 136 (152)
T ss_dssp HHHHHHCSEEEEECSSCCHH-HHHHHHHHHHTTCCEEEEECGGGSCCCCHHHHHH----CCSSSEEEEECCT-TCHHHHH
T ss_pred HHHHHHCCEEEEeCCCCCCC-HHHHHHHHHHcCCeEEEEEeCCccchhHHHHcCC----CCCCeEEEEEecH-HHHHHHH
Confidence 45789999766543322222 4444 7889999999322 11111122222 11 121 235 8888888
Q ss_pred HHHHc
Q psy15555 440 KLILH 444 (488)
Q Consensus 440 ~~ll~ 444 (488)
.+++.
T Consensus 137 ~~f~~ 141 (152)
T 4fyk_A 137 DRYFE 141 (152)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 88876
No 112
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=62.48 E-value=26 Score=26.44 Aligned_cols=107 Identities=11% Similarity=0.049 Sum_probs=65.1
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH---
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA--- 398 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a--- 398 (488)
..+++|+.+.+ ...+.+++..++.+. .+...... ++....+.. .|+++.-. ..+.-|..+++.+.
T Consensus 7 ~~~ilivdd~~-----~~~~~l~~~L~~~~~--~v~~~~~~--~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 77 (137)
T 3hdg_A 7 ALKILIVEDDT-----DAREWLSTIISNHFP--EVWSAGDG--EEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGG 77 (137)
T ss_dssp CCCEEEECSCH-----HHHHHHHHHHHTTCS--CEEEESSH--HHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTT
T ss_pred ccEEEEEeCCH-----HHHHHHHHHHHhcCc--EEEEECCH--HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 56788888654 555777777776442 35554443 666666554 56666544 33444556665554
Q ss_pred cCCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 AGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 ~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..+|+|........+ +..+.+ ..+++.. +.+++.+++.++++
T Consensus 78 ~~~~ii~~s~~~~~~~~~~~~~~g----~~~~l~kP~~~~~l~~~i~~~~~ 124 (137)
T 3hdg_A 78 AKPYVIVISAFSEMKYFIKAIELG----VHLFLPKPIEPGRLMETLEDFRH 124 (137)
T ss_dssp CCCEEEECCCCCCHHHHHHHHHHC----CSEECCSSCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCcChHHHHHHHhCC----cceeEcCCCCHHHHHHHHHHHHH
Confidence 367888754332221 233333 5567765 99999999999886
No 113
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=62.13 E-value=11 Score=28.89 Aligned_cols=107 Identities=7% Similarity=0.042 Sum_probs=65.3
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHh-cCCCCcEEEecCCChHHHHHHHHh---CcEEEEcCCC--CcCCccHHHHHH
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKH-LSLENNVEFKVNLPYEDMKKEFSE---GLIGLHAMWN--EHFGIGIVECMA 398 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~-~~l~~~v~~~g~~~~~el~~~~~~---ad~~v~~s~~--e~~g~~~lEa~a 398 (488)
..+++|+.+.+ ...+.+++..++ .|. .|..... .++....+.. .|+++.-... +.-|..+++.+.
T Consensus 4 ~~~ilivdd~~-----~~~~~l~~~L~~~~~~--~v~~~~~--~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~ 74 (140)
T 3lua_A 4 DGTVLLIDYFE-----YEREKTKIIFDNIGEY--DFIEVEN--LKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIR 74 (140)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHHHHCCC--EEEEECS--HHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCH-----HHHHHHHHHHHhccCc--cEEEECC--HHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHH
Confidence 45677777654 555777777777 554 3444333 3677676655 5666654432 334566666554
Q ss_pred c-----CCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 A-----GLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 ~-----G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
. .+|||........+ +..+.+ ..+++.. +.+++.++|..++.
T Consensus 75 ~~~~~~~~~ii~ls~~~~~~~~~~~~~~g----~~~~l~KP~~~~~l~~~i~~~~~ 126 (140)
T 3lua_A 75 NNSRTANTPVIIATKSDNPGYRHAALKFK----VSDYILKPYPTKRLENSVRSVLK 126 (140)
T ss_dssp HSGGGTTCCEEEEESCCCHHHHHHHHHSC----CSEEEESSCCTTHHHHHHHHHHC
T ss_pred hCcccCCCCEEEEeCCCCHHHHHHHHHcC----CCEEEECCCCHHHHHHHHHHHHH
Confidence 3 78888754332221 223333 5667765 89999999999987
No 114
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=61.88 E-value=47 Score=24.71 Aligned_cols=108 Identities=7% Similarity=0.044 Sum_probs=59.7
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHHc--
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMAA-- 399 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a~-- 399 (488)
..+++|+.+.+ ...+.++...+ .+ -.+..... .++....+.. .|+++.-. ..+.-|..+++.+..
T Consensus 4 ~~~ilivdd~~-----~~~~~l~~~l~-~~--~~v~~~~~--~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 73 (133)
T 3nhm_A 4 KPKVLIVENSW-----TMRETLRLLLS-GE--FDCTTAAD--GASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEP 73 (133)
T ss_dssp -CEEEEECSCH-----HHHHHHHHHHT-TT--SEEEEESS--HHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCEEEEEcCCH-----HHHHHHHHHHh-CC--cEEEEECC--HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 34677777653 44456666555 33 23444443 3666666655 45555543 334446666666554
Q ss_pred ---CCcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 ---GLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 ---G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
++|||........ +..... ..+..+++.. +.+++.++|.+++.
T Consensus 74 ~~~~~pii~~s~~~~~-~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~l~ 121 (133)
T 3nhm_A 74 TLKHIPVIFVSGYAPR-TEGPAD-QPVPDAYLVKPVKPPVLIAQLHALLA 121 (133)
T ss_dssp TTTTCCEEEEESCCC------TT-SCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCcH-hHHHHh-hcCCceEEeccCCHHHHHHHHHHHHh
Confidence 6788874332222 222222 1114567765 99999999999886
No 115
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=61.35 E-value=64 Score=26.52 Aligned_cols=122 Identities=9% Similarity=0.129 Sum_probs=72.9
Q ss_pred CChHHHHHHHHHhHHhhhhhccCceEEEE---EecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCc
Q psy15555 302 KDHPLQLRAMYQLRQIISEELWDNLKLIF---IGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGL 378 (488)
Q Consensus 302 k~~~~ll~a~~~l~~~~~~~~~~~~~l~i---vG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad 378 (488)
+....+-+..+.|.+++ -++++-| +|+-| -.+.-+..+.+++-.+.+ ..+|+..-+...|
T Consensus 60 qAQ~~v~el~~~L~~~G-----~~V~faIHPVAGRMP--------GhMNVLLAEA~VPYd~v~----EMdeIN~df~~tD 122 (207)
T 1djl_A 60 KAQYPIADLVKMLTEQG-----KKVRFGIHPVAGRMP--------GQLNVLLAEAGVPYDIVL----EMDEINHDFPDTD 122 (207)
T ss_dssp TCHHHHHHHHHHHHHTT-----CEEEEEECTTCSSST--------THHHHHHHHTTCCGGGEE----EHHHHGGGGGGCS
T ss_pred HHhHHHHHHHHHHHHCC-----CeEEEEeCccCCCCC--------CCCcEEEEEeCCCHHHHh----hHHHHhhhhhhcC
Confidence 44555566666676666 6777777 55666 234445555555432221 2378889999999
Q ss_pred E-EEEcC------------CCCcCCccHHHHHHcCCcEEEeCC--C---CCccceeccCCCccccceecCCHHHHHHHHH
Q psy15555 379 I-GLHAM------------WNEHFGIGIVECMAAGLIMIAHKS--G---GPKMDIVIEDPETCRNGFLACDEVEYAQTIK 440 (488)
Q Consensus 379 ~-~v~~s------------~~e~~g~~~lEa~a~G~PvI~~~~--~---~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~ 440 (488)
+ +|.+. ...-+|+.++|..-+..-++.-.. . |....++-.. .+-.++.|..+-.+.|.
T Consensus 123 v~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~----nt~MlfGDAK~~~~~l~ 198 (207)
T 1djl_A 123 LVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKP----NTAMLLGDAKKTCDALQ 198 (207)
T ss_dssp EEEEESCCGGGCTHHHHCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCCCGGGGST----TEEEEESCHHHHHHHHH
T ss_pred EEEEeccccccCCccccCCCCCccCCeeecceecCEEEEEECCCCCCcCCCcCcceecC----CceEEeccHHHHHHHHH
Confidence 4 45442 223478889998888877776333 1 2222334333 45666778877777766
Q ss_pred HHHc
Q psy15555 441 LILH 444 (488)
Q Consensus 441 ~ll~ 444 (488)
..+.
T Consensus 199 ~~l~ 202 (207)
T 1djl_A 199 AKVR 202 (207)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 116
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=61.23 E-value=50 Score=24.87 Aligned_cols=108 Identities=7% Similarity=0.046 Sum_probs=61.6
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH----
Q psy15555 326 LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA---- 398 (488)
Q Consensus 326 ~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a---- 398 (488)
.+++++.+.+ ...+.+....+..|. .+.... +..+....+.. .|+++.-. ..+.-|..+++.+.
T Consensus 4 ~~ILivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 74 (138)
T 3c3m_A 4 YTILVVDDSP-----MIVDVFVTMLERGGY--RPITAF--SGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPA 74 (138)
T ss_dssp CEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEES--SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTT
T ss_pred ceEEEEeCCH-----HHHHHHHHHHHHcCc--eEEEeC--CHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCcc
Confidence 3567777654 555777777776654 344333 33666666654 46655543 33444667777764
Q ss_pred -cCCcEEEeC-CCCCccceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 -AGLIMIAHK-SGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 -~G~PvI~~~-~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..+|||... ..... ...... ..+..+++.+ +.+++.+++..++.
T Consensus 75 ~~~~~ii~ls~~~~~~-~~~~~~-~~~~~~~l~KP~~~~~L~~~i~~~~~ 122 (138)
T 3c3m_A 75 TRDIPVLMLTAKPLTP-EEANEY-GSYIEDYILKPTTHHQLYEAIEHVLA 122 (138)
T ss_dssp TTTSCEEEEESSCCCH-HHHHHT-TTTCSEEEECCCHHHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCChH-HHHHHh-hcCHhheEeCCCCHHHHHHHHHHHHH
Confidence 257887643 22221 222211 0012467765 78999999999886
No 117
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=60.94 E-value=63 Score=25.92 Aligned_cols=123 Identities=9% Similarity=0.128 Sum_probs=74.3
Q ss_pred CCChHHHHHHHHHhHHhhhhhccCceEEEE---EecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhC
Q psy15555 301 EKDHPLQLRAMYQLRQIISEELWDNLKLIF---IGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEG 377 (488)
Q Consensus 301 ~k~~~~ll~a~~~l~~~~~~~~~~~~~l~i---vG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~a 377 (488)
-+....+-+....|.+++ -++++-| +|+-| -.+.-+..+.+++-.+.+ ..+|+..-+...
T Consensus 36 AqAQ~~v~el~~~L~~~G-----~~V~faIHPVAGRMP--------GhMNVLLAEA~VPYd~v~----EMdeIN~df~~t 98 (184)
T 1d4o_A 36 AKAQYPIADLVKMLSEQG-----KKVRFGIHPVAGRMP--------GQLNVLLAEAGVPYDIVL----EMDEINHDFPDT 98 (184)
T ss_dssp TTTHHHHHHHHHHHHHTT-----CEEEEEECTTCSSST--------THHHHHHHHHTCCGGGEE----EHHHHGGGGGGC
T ss_pred HHHHHHHHHHHHHHHHCC-----CeEEEEeccccccCC--------CcceEEEEEecCCHHHHH----hHHHHhhhhhhc
Confidence 345556666667777776 6888877 56666 234444555555432222 237888999999
Q ss_pred cE-EEEcC------------CCCcCCccHHHHHHcCCcEEEeCC--C---CCccceeccCCCccccceecCCHHHHHHHH
Q psy15555 378 LI-GLHAM------------WNEHFGIGIVECMAAGLIMIAHKS--G---GPKMDIVIEDPETCRNGFLACDEVEYAQTI 439 (488)
Q Consensus 378 d~-~v~~s------------~~e~~g~~~lEa~a~G~PvI~~~~--~---~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i 439 (488)
|+ +|.+. ...-+|+.++|..-+..-++.-.. . |....++-.. .+..++.|..+-.+.|
T Consensus 99 Dv~lVIGANDvVNPaA~~dp~SpI~GMPvl~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~----nt~MlfGDAK~~~~~l 174 (184)
T 1d4o_A 99 DLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKP----NTAMLLGDAKKTCDAL 174 (184)
T ss_dssp SEEEEESCSGGGCTHHHHCTTSTTTTCCCCCGGGSSCEEEEESSSCCCTTCCCCGGGGST----TEEEEESCHHHHHHHH
T ss_pred CEEEEecCCccCCCccccCCCCCccCCeeeehhhCCEEEEEECCCCCCcCCCcCcceecC----CceEEeccHHHHHHHH
Confidence 94 44442 223478889999888877777433 2 2222333333 4566677887777766
Q ss_pred HHHHc
Q psy15555 440 KLILH 444 (488)
Q Consensus 440 ~~ll~ 444 (488)
...+.
T Consensus 175 ~~~l~ 179 (184)
T 1d4o_A 175 QAKVR 179 (184)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
No 118
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=60.45 E-value=21 Score=27.47 Aligned_cols=108 Identities=9% Similarity=0.061 Sum_probs=54.9
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcC-CCCcEEEecCCChHHHHHHH---HhCcEEEEcC-CCCcCCccHHHHHH-
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLS-LENNVEFKVNLPYEDMKKEF---SEGLIGLHAM-WNEHFGIGIVECMA- 398 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~-l~~~v~~~g~~~~~el~~~~---~~ad~~v~~s-~~e~~g~~~lEa~a- 398 (488)
..+++|+.+.+ ...+.+++.++..| . .+...... .+.+..+. ...|+++.-. ..+.-|..+++.+.
T Consensus 20 ~~~ilivdd~~-----~~~~~l~~~L~~~g~~--~v~~~~~~-~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~ 91 (146)
T 4dad_A 20 MINILVASEDA-----SRLAHLARLVGDAGRY--RVTRTVGR-AAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSR 91 (146)
T ss_dssp GCEEEEECSCH-----HHHHHHHHHHHHHCSC--EEEEECCC-HHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEeCCH-----HHHHHHHHHHhhCCCe--EEEEeCCH-HHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHH
Confidence 45666665543 44455566665554 2 23332221 12333333 2356554433 22333445555443
Q ss_pred --cCCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 --AGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 --~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..+|||........+ +.+..+ ..+++.. +.++|..+|..++.
T Consensus 92 ~~~~~~ii~lt~~~~~~~~~~~~~~g----a~~~l~Kp~~~~~L~~~i~~~~~ 140 (146)
T 4dad_A 92 LHPGLTCLLVTTDASSQTLLDAMRAG----VRDVLRWPLEPRALDDALKRAAA 140 (146)
T ss_dssp HCTTCEEEEEESCCCHHHHHHHHTTT----EEEEEESSCCHHHHHHHHHHHHH
T ss_pred hCCCCcEEEEeCCCCHHHHHHHHHhC----CceeEcCCCCHHHHHHHHHHHHh
Confidence 267777743322221 223333 5567765 89999999998876
No 119
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=60.40 E-value=52 Score=28.06 Aligned_cols=93 Identities=12% Similarity=0.083 Sum_probs=58.2
Q ss_pred hHHHHHHHHHhHHhhhhhccCceEEEEEecCC-CCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEE
Q psy15555 304 HPLQLRAMYQLRQIISEELWDNLKLIFIGSTR-NEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLH 382 (488)
Q Consensus 304 ~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~-~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~ 382 (488)
++...++++.+.+ .+.++.+++.+. ..+...+...+.+..+++|. .+..+... ++..+.+..||.++.
T Consensus 17 l~~~~~~l~~~~~-------~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~--~~~~v~~~--~d~~~~l~~ad~I~l 85 (229)
T 1fy2_A 17 LEHALPLIANQLN-------GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGV--NVTGIHRV--ADPLAAIEKAEIIIV 85 (229)
T ss_dssp TTTTHHHHHHHHT-------TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTC--EEEETTSS--SCHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHhc-------CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCC--EEEEEecc--ccHHHHHhcCCEEEE
Confidence 4444666666653 245778888663 23344677888888888885 35555433 345577888997776
Q ss_pred cCCCCc---------CC--ccHHHHHHcCCcEEEeCC
Q psy15555 383 AMWNEH---------FG--IGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 383 ~s~~e~---------~g--~~~lEa~a~G~PvI~~~~ 408 (488)
|- .+. .| -.+-|+...|+|++.+-.
T Consensus 86 pG-G~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sA 121 (229)
T 1fy2_A 86 GG-GNTFQLLKESRERGLLAPMADRVKRGALYIGWSA 121 (229)
T ss_dssp CC-SCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETH
T ss_pred CC-CcHHHHHHHHHHCChHHHHHHHHHcCCEEEEECH
Confidence 64 221 12 235577778999988543
No 120
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=59.67 E-value=48 Score=24.17 Aligned_cols=105 Identities=16% Similarity=0.135 Sum_probs=59.2
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH-----
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA----- 398 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a----- 398 (488)
++.++.+.+ ...+.++...+..|. .+.... +..+....+.. .|+++.-. ..+.-|..+++.+.
T Consensus 3 ~ilivdd~~-----~~~~~l~~~L~~~~~--~v~~~~--~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~ 73 (124)
T 1mb3_A 3 KVLIVEDNE-----LNMKLFHDLLEAQGY--ETLQTR--EGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDL 73 (124)
T ss_dssp EEEEECSCH-----HHHHHHHHHHHHTTC--EEEEES--CHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTT
T ss_pred EEEEEcCCH-----HHHHHHHHHHHHcCc--EEEEeC--CHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccc
Confidence 456666553 555777777776654 243332 33555555543 57655543 33344566666664
Q ss_pred cCCcEEEeCCCCCc---cceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 AGLIMIAHKSGGPK---MDIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 ~G~PvI~~~~~~~~---~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..+|+|........ .+..+.+ ..+++.. +.+++.+++.+++.
T Consensus 74 ~~~~ii~~s~~~~~~~~~~~~~~g----~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 74 AHIPVVAVTAFAMKGDEERIREGG----CEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp TTSCEEEEC------CHHHHHHHT----CSEEECSSCCHHHHHHHHHHHHS
T ss_pred cCCcEEEEECCCCHHHHHHHHhCC----CCEEEeCCCCHHHHHHHHHHHHh
Confidence 26788774332221 1223334 5577765 89999999988875
No 121
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=59.58 E-value=71 Score=26.15 Aligned_cols=106 Identities=7% Similarity=0.006 Sum_probs=58.1
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEE-EecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHHc--
Q psy15555 326 LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVE-FKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMAA-- 399 (488)
Q Consensus 326 ~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a~-- 399 (488)
.+++|+.+.+ ...+.+.......|. .+. ... +..+....+.. .|+++.-. ..+.-|..+++.+..
T Consensus 14 ~~iLivdd~~-----~~~~~l~~~L~~~g~--~v~~~~~--~~~~al~~~~~~~~dlvi~D~~~p~~~g~~~~~~l~~~~ 84 (205)
T 1s8n_A 14 RRVLIAEDEA-----LIRMDLAEMLREEGY--EIVGEAG--DGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKR 84 (205)
T ss_dssp CEEEEECSSH-----HHHHHHHHHHHHTTC--EEEEEES--SHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTT
T ss_pred ccEEEEECCH-----HHHHHHHHHHHHCCC--EEEEEeC--CHHHHHHHHhhcCCCEEEEeCCCCCCChHHHHHHHHhcC
Confidence 5677777654 555667777766553 233 233 23555555543 56555443 333345556655542
Q ss_pred CCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 GLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..|||........+ +.+..+ ..+++.. +.+++..++..++.
T Consensus 85 ~~pii~lt~~~~~~~~~~~~~~g----a~~~l~KP~~~~~L~~~i~~~~~ 130 (205)
T 1s8n_A 85 IAPIVVLTAFSQRDLVERARDAG----AMAYLVKPFSISDLIPAIELAVS 130 (205)
T ss_dssp CSCEEEEEEGGGHHHHHTTGGGS----CEEEEEESCCHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHhcC----CcEEEeCCCCHHHHHHHHHHHHH
Confidence 34776632221211 223333 4566654 89999999998876
No 122
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=59.54 E-value=56 Score=28.85 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=27.3
Q ss_pred cccccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 49 YNVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 49 ~~~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
.+..++|+++- ++.+| ...++++.+..|+.+++-+..+
T Consensus 21 ~~~~~~IgvfD--SGvGG------Ltv~~~i~~~lP~e~~iy~~D~ 58 (274)
T 3uhf_A 21 QSNAMKIGVFD--SGVGG------LSVLKSLYEARLFDEIIYYGDT 58 (274)
T ss_dssp CCSCCEEEEEE--SSSTT------HHHHHHHHHTTCCSEEEEEECT
T ss_pred cCCCCeEEEEE--CCCCh------HHHHHHHHHHCCCCCEEEEecC
Confidence 34568999984 44455 5566888888888888777665
No 123
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=59.46 E-value=50 Score=28.31 Aligned_cols=107 Identities=9% Similarity=0.049 Sum_probs=59.8
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH---
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA--- 398 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a--- 398 (488)
..++.|+-+.+ ...+.+....+..|. .|.... +.++..+.+.. .|+++.-. ..+.-|..+++.+.
T Consensus 23 ~~~ILivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~ 93 (250)
T 3r0j_A 23 EARVLVVDDEA-----NIVELLSVSLKFQGF--EVYTAT--NGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLRADG 93 (250)
T ss_dssp SCEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEES--SHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTT
T ss_pred CceEEEEECCH-----HHHHHHHHHHHHCCC--EEEEEC--CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 45677776654 444566666666553 243333 33555555543 56555433 33344566666554
Q ss_pred cCCcEEEeCCCCCccc---eeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 AGLIMIAHKSGGPKMD---IVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 ~G~PvI~~~~~~~~~e---iv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..+|||.-......+. .++.+ ..+++.. +.+++.++|..++.
T Consensus 94 ~~~~ii~lt~~~~~~~~~~~~~~G----a~~yl~Kp~~~~~L~~~i~~~~~ 140 (250)
T 3r0j_A 94 IDAPALFLTARDSLQDKIAGLTLG----GDDYVTKPFSLEEVVARLRVILR 140 (250)
T ss_dssp CCCCEEEEECSTTHHHHHHHHTST----TCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHcC----CcEEEeCCCCHHHHHHHHHHHHH
Confidence 3578777433222212 23333 5677765 89999999988874
No 124
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=59.44 E-value=50 Score=29.86 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=22.2
Q ss_pred ccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 52 ~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
+|||+|+ |....+....++|.+. +++|+.+.+.
T Consensus 2 ~mrivf~--------Gtp~fa~~~L~~L~~~--~~~v~~Vvt~ 34 (314)
T 3tqq_A 2 SLKIVFA--------GTPQFAVPTLRALIDS--SHRVLAVYTQ 34 (314)
T ss_dssp CCEEEEE--------ECSGGGHHHHHHHHHS--SSEEEEEECC
T ss_pred CcEEEEE--------CCCHHHHHHHHHHHHC--CCeEEEEEeC
Confidence 5899997 4555666777888887 4555554443
No 125
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=59.16 E-value=49 Score=24.77 Aligned_cols=107 Identities=11% Similarity=0.121 Sum_probs=61.4
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh-------CcEEEEcCC-CCcCCccHHHHH
Q psy15555 326 LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE-------GLIGLHAMW-NEHFGIGIVECM 397 (488)
Q Consensus 326 ~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~-------ad~~v~~s~-~e~~g~~~lEa~ 397 (488)
.++.|+.+.+ ...+.++...+..|.. .+..... ..+..+.+.. .|+++.--. .+.-|..+++.+
T Consensus 3 ~~ILivdD~~-----~~~~~l~~~L~~~g~~-~v~~~~~--~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~l 74 (133)
T 2r25_B 3 VKILVVEDNH-----VNQEVIKRMLNLEGIE-NIELACD--GQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMI 74 (133)
T ss_dssp SCEEEECSCH-----HHHHHHHHHHHHTTCC-CEEEESS--HHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHH
T ss_pred ceEEEEcCCH-----HHHHHHHHHHHHcCCc-eEEEECC--HHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHH
Confidence 3566777654 5556777777765532 3444433 2555555543 576665433 233456666665
Q ss_pred Hc----CCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 398 AA----GLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 398 a~----G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.. ..|||........+ +..+.+ ..+++.+ +.+++.+++.+++.
T Consensus 75 r~~~~~~~~ii~lt~~~~~~~~~~~~~~g----a~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 75 RRDLGYTSPIVALTAFADDSNIKECLESG----MNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp HHHSCCCSCEEEEESCCSHHHHHHHHHTT----CSEEEESSCCHHHHHHHHHHHCT
T ss_pred HhhcCCCCCEEEEECCCCHHHHHHHHHcC----CCEEEeCCCCHHHHHHHHHHHHH
Confidence 42 56877643322211 233334 5677766 89999999998875
No 126
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=59.03 E-value=56 Score=24.68 Aligned_cols=108 Identities=8% Similarity=0.022 Sum_probs=60.3
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhc-CCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHHc-
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHL-SLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMAA- 399 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~-~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a~- 399 (488)
..+++|+.+.+ ...+.+.+..+.. +.. .+.... +..+....+.. .|+++.-. ..+.-|..+++.+..
T Consensus 9 ~~~iLivdd~~-----~~~~~l~~~L~~~~~~~-~v~~~~--~~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 80 (143)
T 2qv0_A 9 KMKVIIVEDEF-----LAQQELSWLINTHSQME-IVGSFD--DGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQF 80 (143)
T ss_dssp -CEEEEECSCH-----HHHHHHHHHHHHHSCCE-EEEEES--CHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTS
T ss_pred ceEEEEEcCCH-----HHHHHHHHHHHhCCCce-EEEEeC--CHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcc
Confidence 56777887654 5556677777665 321 121222 33566666554 46666543 233345666666653
Q ss_pred --CCcEEE-eCCCCCccceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 --GLIMIA-HKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 --G~PvI~-~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..|||. +.......+.++.+ ..+++.. +.+++.+++.+++.
T Consensus 81 ~~~~~ii~~s~~~~~~~~~~~~g----~~~~l~KP~~~~~l~~~i~~~~~ 126 (143)
T 2qv0_A 81 AHKPFIVFITAWKEHAVEAFELE----AFDYILKPYQESRIINMLQKLTT 126 (143)
T ss_dssp TTCCEEEEEESCCTTHHHHHHTT----CSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCceEEEEeCCHHHHHHHHhCC----cceEEeCCCCHHHHHHHHHHHHH
Confidence 445554 43322222334444 5667765 89999999998876
No 127
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=59.00 E-value=49 Score=24.07 Aligned_cols=105 Identities=9% Similarity=0.122 Sum_probs=59.9
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH--cCC
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA--AGL 401 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a--~G~ 401 (488)
++.++.+.+ ...+.+.+..+..|. .+.... +..+....+.. .|+++.-. ..+.-|..+++.+. ...
T Consensus 4 ~ilivdd~~-----~~~~~l~~~L~~~~~--~v~~~~--~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~ 74 (122)
T 1zgz_A 4 HIVIVEDEP-----VTQARLQSYFTQEGY--TVSVTA--SGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTV 74 (122)
T ss_dssp EEEEECSSH-----HHHHHHHHHHHHTTC--EEEEES--SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCC
T ss_pred EEEEEECCH-----HHHHHHHHHHHHCCC--eEEEec--CHHHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCC
Confidence 566676553 555677777776653 344333 33666666654 56655543 33334566666664 367
Q ss_pred cEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 402 IMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 402 PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
|+|......... +..+.+ ..+++.. +.+++.+.+.+++.
T Consensus 75 ~ii~~s~~~~~~~~~~~~~~g----a~~~l~Kp~~~~~l~~~i~~~~~ 118 (122)
T 1zgz_A 75 GIILVTGRSDRIDRIVGLEMG----ADDYVTKPLELRELVVRVKNLLW 118 (122)
T ss_dssp EEEEEESSCCHHHHHHHHHHT----CSEEEESSCCHHHHHHHHHHHHH
T ss_pred CEEEEECCCChhhHHHHHHhC----HHHHccCCCCHHHHHHHHHHHHH
Confidence 777643322221 223333 5677765 88999988887764
No 128
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=58.89 E-value=55 Score=24.54 Aligned_cols=108 Identities=17% Similarity=0.119 Sum_probs=63.7
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEE-ecCCChHHHHHHHHh--CcEEEEcCCC--CcCCccHHHHHH
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEF-KVNLPYEDMKKEFSE--GLIGLHAMWN--EHFGIGIVECMA 398 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~-~g~~~~~el~~~~~~--ad~~v~~s~~--e~~g~~~lEa~a 398 (488)
...+++|+.+.+ ...+.+.+..++.|. .+.. ... .++....+.. .|+++.-... +.-|..+++.+.
T Consensus 8 ~~~~iLivdd~~-----~~~~~l~~~L~~~g~--~v~~~~~~--~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~ 78 (140)
T 3cg0_A 8 DLPGVLIVEDGR-----LAAATLRIQLESLGY--DVLGVFDN--GEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLA 78 (140)
T ss_dssp CCCEEEEECCBH-----HHHHHHHHHHHHHTC--EEEEEESS--HHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHH
T ss_pred CCceEEEEECCH-----HHHHHHHHHHHHCCC--eeEEEECC--HHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHH
Confidence 456788887664 556777777777664 2442 333 3666666554 5766654332 234555555444
Q ss_pred --cCCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 --AGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 --~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.++|+|.-......+ +..+.+ ..+++.. +.+++.+++..++.
T Consensus 79 ~~~~~~ii~ls~~~~~~~~~~~~~~g----~~~~l~kp~~~~~l~~~i~~~~~ 127 (140)
T 3cg0_A 79 AGCNLPIIFITSSQDVETFQRAKRVN----PFGYLAKPVAADTLHRSIEMAIH 127 (140)
T ss_dssp HHSCCCEEEEECCCCHHHHHHHHTTC----CSEEEEESCCHHHHHHHHHHHHH
T ss_pred hCCCCCEEEEecCCCHHHHHHHHhcC----CCEEEeCCCCHHHHHHHHHHHHh
Confidence 578888743322221 223333 4566654 89999999988876
No 129
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=58.73 E-value=68 Score=28.59 Aligned_cols=109 Identities=7% Similarity=-0.039 Sum_probs=62.8
Q ss_pred EEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC-----CC
Q psy15555 292 IISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN-----LP 366 (488)
Q Consensus 292 i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-----~~ 366 (488)
++.+|.-....+-..+++.+-++... ++.++.+++.-.. +..++.+.+++..+++|.. .|..+.- .+
T Consensus 29 l~iiGGgedk~~~~~i~~~~v~lagg------~~~~I~~IptAs~-~~~~~~~~~~~~f~~lG~~-~v~~L~i~~r~~a~ 100 (291)
T 3en0_A 29 ILIIGGAEDKVHGREILQTFWSRSGG------NDAIIGIIPSASR-EPLLIGERYQTIFSDMGVK-ELKVLDIRDRAQGD 100 (291)
T ss_dssp EEEECSSCCSSSCCHHHHHHHHHTTG------GGCEEEEECTTCS-SHHHHHHHHHHHHHHHCCS-EEEECCCCSGGGGG
T ss_pred EEEEECCCCccChHHHHHHHHHHcCC------CCCeEEEEeCCCC-ChHHHHHHHHHHHHHcCCC-eeEEEEecCccccC
Confidence 34444433322334455555554432 4578888885432 2346778888888888863 4555533 23
Q ss_pred hHHHHHHHHhCcEEEEcC-C-------CCcCC--ccHHHHHHcC-CcEEEeCC
Q psy15555 367 YEDMKKEFSEGLIGLHAM-W-------NEHFG--IGIVECMAAG-LIMIAHKS 408 (488)
Q Consensus 367 ~~el~~~~~~ad~~v~~s-~-------~e~~g--~~~lEa~a~G-~PvI~~~~ 408 (488)
.+++.+.+..||+++.+- . ....+ -.+-|+...| +|++.+..
T Consensus 101 ~~~~~~~l~~ad~I~v~GGnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~GtSA 153 (291)
T 3en0_A 101 DSGYRLFVEQCTGIFMTGGDQLRLCGLLADTPLMDRIRQRVHNGEISLAGTSA 153 (291)
T ss_dssp CHHHHHHHHHCSEEEECCSCHHHHHHHHTTCHHHHHHHHHHHTTSSEEEEETH
T ss_pred CHHHHHHHhcCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCeEEEEeCH
Confidence 467888999999544432 1 11111 2355777889 78776543
No 130
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=58.29 E-value=49 Score=25.25 Aligned_cols=108 Identities=9% Similarity=0.025 Sum_probs=62.3
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH--
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA-- 398 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a-- 398 (488)
...++.|+.+.+ ...+.+++..++.|. .+.... +.++..+.+.. .|+++.-. ..+.-|..+++.+.
T Consensus 13 ~~~~iLivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~ 83 (143)
T 3m6m_D 13 RSMRMLVADDHE-----ANRMVLQRLLEKAGH--KVLCVN--GAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVM 83 (143)
T ss_dssp --CEEEEECSSH-----HHHHHHHHHHHC--C--EEEEES--SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHH
T ss_pred ccceEEEEeCCH-----HHHHHHHHHHHHcCC--eEEEeC--CHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 356788887664 555677777776653 344433 33666666654 56655543 33444666776664
Q ss_pred -----cCCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 -----AGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 -----~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..+|+|........+ +..+.+ ..+++.+ +.+++.+++.++..
T Consensus 84 ~~~~~~~~pii~~s~~~~~~~~~~~~~~G----a~~~l~KP~~~~~L~~~l~~~~~ 135 (143)
T 3m6m_D 84 QASGMRYTPVVVLSADVTPEAIRACEQAG----ARAFLAKPVVAAKLLDTLADLAV 135 (143)
T ss_dssp HHTTCCCCCEEEEESCCCHHHHHHHHHTT----CSEEEESSCCHHHHHHHHHHHC-
T ss_pred hhccCCCCeEEEEeCCCCHHHHHHHHHcC----hhheeeCCCCHHHHHHHHHHHHH
Confidence 236787754333321 223333 5677766 89999999998875
No 131
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=58.06 E-value=64 Score=29.18 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=22.6
Q ss_pred ccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 52 ~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
+|||+|+ |....+....++|.+. +++|+.+.+.
T Consensus 7 ~mrivf~--------Gt~~fa~~~L~~L~~~--~~~v~~Vvt~ 39 (318)
T 3q0i_A 7 SLRIVFA--------GTPDFAARHLAALLSS--EHEIIAVYTQ 39 (318)
T ss_dssp CCEEEEE--------CCSHHHHHHHHHHHTS--SSEEEEEECC
T ss_pred CCEEEEE--------ecCHHHHHHHHHHHHC--CCcEEEEEcC
Confidence 6899997 5556666777888876 4555554443
No 132
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=57.91 E-value=55 Score=24.24 Aligned_cols=107 Identities=12% Similarity=0.145 Sum_probs=63.2
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHHc--
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMAA-- 399 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a~-- 399 (488)
..+++|+.+.+ ...+.+++..++.|. .|..... .++....+.. .|+++.-. ..+.-|..+++.+..
T Consensus 6 ~~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~~--~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 76 (132)
T 3lte_A 6 SKRILVVDDDQ-----AMAAAIERVLKRDHW--QVEIAHN--GFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNK 76 (132)
T ss_dssp -CEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEESS--HHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTT
T ss_pred CccEEEEECCH-----HHHHHHHHHHHHCCc--EEEEeCC--HHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 45777887654 556777777777654 3544443 3666666654 45555433 344456677777653
Q ss_pred ---CCcEEEeCCCCCc--cceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 ---GLIMIAHKSGGPK--MDIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 ---G~PvI~~~~~~~~--~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..|+|........ .+.++.+ ..+++.. +.+++.++|.+...
T Consensus 77 ~~~~~~ii~~~~~~~~~~~~~~~~g----~~~~l~kP~~~~~l~~~i~~~~~ 124 (132)
T 3lte_A 77 VANQPKILVVSGLDKAKLQQAVTEG----ADDYLEKPFDNDALLDRIHDLVN 124 (132)
T ss_dssp CSSCCEEEEECCSCSHHHHHHHHHT----CCEEECSSCCHHHHHHHHHHHHC
T ss_pred ccCCCeEEEEeCCChHHHHHHHHhC----hHHHhhCCCCHHHHHHHHHHHcC
Confidence 3455555433221 1223333 5567765 89999999998876
No 133
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=57.78 E-value=6.7 Score=34.81 Aligned_cols=44 Identities=9% Similarity=0.092 Sum_probs=31.9
Q ss_pred HHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCC
Q psy15555 368 EDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGP 411 (488)
Q Consensus 368 ~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~ 411 (488)
+++.+++..+|++|-.+..+..--.+..++..|+|+|++..+..
T Consensus 65 ~dl~~ll~~~DVVIDfT~p~a~~~~~~~al~~G~~vVigTTG~s 108 (272)
T 4f3y_A 65 DDIERVCAEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFS 108 (272)
T ss_dssp CCHHHHHHHCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCC
T ss_pred CCHHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 45666777999888766544433456778999999999876643
No 134
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=57.30 E-value=56 Score=24.28 Aligned_cols=106 Identities=13% Similarity=0.115 Sum_probs=59.3
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEE-EecCCChHHHHHHHH--hCcEEEEcC-CCCcCCccHHHHHH---
Q psy15555 326 LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVE-FKVNLPYEDMKKEFS--EGLIGLHAM-WNEHFGIGIVECMA--- 398 (488)
Q Consensus 326 ~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~~~el~~~~~--~ad~~v~~s-~~e~~g~~~lEa~a--- 398 (488)
+++.++.+.+ ...+.+++..++.|. .+. ..... ++....+. ..|+++.-. ..+.-|..+++.+.
T Consensus 2 ~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~~~~--~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 72 (134)
T 3f6c_A 2 LNAIIIDDHP-----LAIAAIRNLLIKNDI--EILAELTEG--GSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQ 72 (134)
T ss_dssp EEEEEECCCH-----HHHHHHHHHHHHTTE--EEEEEESSS--TTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTT
T ss_pred eEEEEEcCCH-----HHHHHHHHHHhhCCc--EEEEEcCCH--HHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcC
Confidence 4566776553 555777777777652 232 33333 45555443 356555443 33444556665554
Q ss_pred cCCcEEEeCCCCCc---cceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 AGLIMIAHKSGGPK---MDIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 ~G~PvI~~~~~~~~---~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
...|+|........ .+..+.+ ..+++.. +.+++.+++..++.
T Consensus 73 ~~~~ii~~s~~~~~~~~~~~~~~g----~~~~l~kp~~~~~l~~~i~~~~~ 119 (134)
T 3f6c_A 73 YSGIIIIVSAKNDHFYGKHCADAG----ANGFVSKKEGMNNIIAAIEAAKN 119 (134)
T ss_dssp CCSEEEEEECC---CTHHHHHHTT----CSEEEEGGGCTHHHHHHHHHHHT
T ss_pred CCCeEEEEeCCCChHHHHHHHHhC----CCEEEeCCCCHHHHHHHHHHHHC
Confidence 35677763332221 1233344 5667765 89999999999886
No 135
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=56.78 E-value=58 Score=24.22 Aligned_cols=106 Identities=9% Similarity=0.106 Sum_probs=61.4
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcCC-CCcCCccHHHHHH---c
Q psy15555 326 LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAMW-NEHFGIGIVECMA---A 399 (488)
Q Consensus 326 ~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s~-~e~~g~~~lEa~a---~ 399 (488)
.+++++.+.+ ...+.++...+..|. .+.... +..+....+.. .|+++.-.. .+.-|..+++.+. .
T Consensus 4 ~~Ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~ 74 (132)
T 3crn_A 4 KRILIVDDDT-----AILDSTKQILEFEGY--EVEIAA--TAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLRP 74 (132)
T ss_dssp CEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEES--SHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCT
T ss_pred cEEEEEeCCH-----HHHHHHHHHHHHCCc--eEEEeC--CHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCC
Confidence 4567777654 555677777776653 344333 33566665554 466665432 2334555665553 3
Q ss_pred CCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 GLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
++|+|........+ +..+.+ ..+++.. +.+++.+++.+++.
T Consensus 75 ~~~ii~~s~~~~~~~~~~~~~~g----a~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 75 GMKKIMVTGYASLENSVFSLNAG----ADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp TSEEEEEESCCCHHHHHHHHHTT----CSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCcEEEEeccccHHHHHHHHhcc----chhhccCCCCHHHHHHHHHHHHh
Confidence 67887643322211 233344 5677765 89999999988875
No 136
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=56.65 E-value=37 Score=25.71 Aligned_cols=107 Identities=7% Similarity=0.059 Sum_probs=62.3
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcCCCCcCCccHHHHHH---c
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAMWNEHFGIGIVECMA---A 399 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s~~e~~g~~~lEa~a---~ 399 (488)
..+++++.+.+ ...+.+++..++.|. .|..... ..+....+.. .|+++.-...+.-|..+++.+. .
T Consensus 4 ~~~iLivdd~~-----~~~~~l~~~L~~~g~--~v~~~~~--~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~~ 74 (142)
T 2qxy_A 4 TPTVMVVDESR-----ITFLAVKNALEKDGF--NVIWAKN--EQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEFP 74 (142)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHGGGTC--EEEEESS--HHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHCT
T ss_pred CCeEEEEeCCH-----HHHHHHHHHHHhCCC--EEEEECC--HHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHCC
Confidence 45677777654 555777777777664 3444433 3666666655 4655544322223444554443 3
Q ss_pred CCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 GLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
++|+|........+ +....+ ..+++.. +.+++.+++..++.
T Consensus 75 ~~pii~ls~~~~~~~~~~~~~~g----~~~~l~kP~~~~~l~~~i~~~~~ 120 (142)
T 2qxy_A 75 DTKVAVLSAYVDKDLIINSVKAG----AVDYILKPFRLDYLLERVKKIIS 120 (142)
T ss_dssp TCEEEEEESCCCHHHHHHHHHHT----CSCEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHCC----cceeEeCCCCHHHHHHHHHHHHh
Confidence 68888743322221 223333 4567755 89999999999887
No 137
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=56.48 E-value=34 Score=27.44 Aligned_cols=72 Identities=17% Similarity=0.088 Sum_probs=40.4
Q ss_pred HHHHhCcEEEEcC-CCCcCCccHHH---HHHcCCcEEEeCCC----CCc-c-------ceeccC----C-----Cccccc
Q psy15555 372 KEFSEGLIGLHAM-WNEHFGIGIVE---CMAAGLIMIAHKSG----GPK-M-------DIVIED----P-----ETCRNG 426 (488)
Q Consensus 372 ~~~~~ad~~v~~s-~~e~~g~~~lE---a~a~G~PvI~~~~~----~~~-~-------eiv~~~----~-----~~~~~g 426 (488)
+.+..||++|.-- ..+.=.-+.+| |.+.|+||++.... |.. . |+.++. | .-..+|
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a~gkPVi~~~~D~R~~g~~~~~~~~~~~~~~e~~f~~~N~~~~G~i~~~g 144 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDALNEIAENQFHYLNLYTVGLIKLNG 144 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEEEECCCGGGCCTTCHHHHHHTTSTTCCCSCCCCHHHHHHHHTTE
T ss_pred HHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEcCcccccCCcchhhhhhHHHhhhhhhhhhHHHhhhHHhCC
Confidence 4588999766532 11111224555 78899999995321 111 0 111110 0 001268
Q ss_pred eecCCHHHHHHHHHHHH
Q psy15555 427 FLACDEVEYAQTIKLIL 443 (488)
Q Consensus 427 ~~~~~~~~l~~~i~~ll 443 (488)
.++.+.+++.++|.+.+
T Consensus 145 ~~~~~~~~~~~~l~~~~ 161 (162)
T 3ehd_A 145 RVVSSEEDLLEEIKQRL 161 (162)
T ss_dssp EEESSHHHHHHHHHHTC
T ss_pred eEEeCHHHHHHHHHHHh
Confidence 88889999999888764
No 138
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=55.79 E-value=53 Score=23.97 Aligned_cols=105 Identities=9% Similarity=0.058 Sum_probs=58.5
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH--cCC
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA--AGL 401 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a--~G~ 401 (488)
++.++.+.+ ...+.++...+..|. .+.... +.++..+.+.. .|+++.-. ..+.-|..+++.+. .+.
T Consensus 4 ~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~ 74 (120)
T 3f6p_A 4 KILVVDDEK-----PIADILEFNLRKEGY--EVHCAH--DGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDM 74 (120)
T ss_dssp EEEEECSCH-----HHHHHHHHHHHHTTC--EEEEES--SHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCS
T ss_pred eEEEEECCH-----HHHHHHHHHHHhCCE--EEEEeC--CHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence 556666553 445666666766653 344333 33666666654 45555433 33334555555543 367
Q ss_pred cEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 402 IMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 402 PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
|+|......... +..+.+ ..+++.+ +.+++..++.+++.
T Consensus 75 ~ii~~t~~~~~~~~~~~~~~g----a~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 75 PIIMLTAKDSEIDKVIGLEIG----ADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp CEEEEEESSCHHHHHHHHHTT----CCEEEEESCCHHHHHHHHHHHHT
T ss_pred CEEEEECCCChHHHHHHHhCC----cceeEcCCCCHHHHHHHHHHHHh
Confidence 877643322211 223334 5667765 89999999988765
No 139
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=55.69 E-value=43 Score=26.31 Aligned_cols=94 Identities=14% Similarity=0.201 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh----Cc-EEEEcCCCCcCCccHHHHH----HcCCcEEEeCCCCC-cc
Q psy15555 344 KDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE----GL-IGLHAMWNEHFGIGIVECM----AAGLIMIAHKSGGP-KM 413 (488)
Q Consensus 344 ~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~----ad-~~v~~s~~e~~g~~~lEa~----a~G~PvI~~~~~~~-~~ 413 (488)
+.+++.+.++|+ .+.+...=..+|+.+.+.. .| +++.|..+-+.+..+.+|+ +.++|+|=-..... .+
T Consensus 36 ~~l~~~a~~~g~--~v~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~l~~~~~P~VEVHiSNi~aR 113 (151)
T 3u80_A 36 KLCAEWGKDLGL--EVEVRQTDDEAEMVRWMHQAADEKTPVVMNPAAFTHYSYALADAAHMVIDENLPLMEVHISNPSAR 113 (151)
T ss_dssp HHHHHHHHHTTE--EEEEEECSCHHHHHHHHHHHHHHTCCEEEECTTCCSCCHHHHHHHHHHHHTTCCEEEEESSCCC--
T ss_pred HHHHHHHHHcCC--EEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhHHHHHHHHHHhhcCCCEEEEEcCCcccc
Confidence 344445555554 2444443344566555444 57 7888888888899999994 45999997333222 11
Q ss_pred c------eeccCCCccccceecC-CHHHHHHHHHHHH
Q psy15555 414 D------IVIEDPETCRNGFLAC-DEVEYAQTIKLIL 443 (488)
Q Consensus 414 e------iv~~~~~~~~~g~~~~-~~~~l~~~i~~ll 443 (488)
| ++.+. ..|.++. -.+...-++..++
T Consensus 114 E~FRh~S~~s~~----a~G~I~G~G~~gY~lAl~~~~ 146 (151)
T 3u80_A 114 DEFRKRSVISPV----ATGTITGMGFYGYKLALDAVA 146 (151)
T ss_dssp -------CSCCC----CSEEEESSTTHHHHHHHHHHH
T ss_pred cchhhccccccc----ceEEEEecChHHHHHHHHHHH
Confidence 3 33333 4566665 5566555555444
No 140
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=55.59 E-value=28 Score=32.43 Aligned_cols=37 Identities=8% Similarity=-0.002 Sum_probs=24.1
Q ss_pred HHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEE
Q psy15555 368 EDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIA 405 (488)
Q Consensus 368 ~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~ 405 (488)
+++.+.+..+|++|+.|...-+.--+++.|+ -.|||.
T Consensus 255 ~~L~eav~~ADVlIG~Sap~l~t~emVk~Ma-~~pIIf 291 (388)
T 1vl6_A 255 GDLETALEGADFFIGVSRGNILKPEWIKKMS-RKPVIF 291 (388)
T ss_dssp SCHHHHHTTCSEEEECSCSSCSCHHHHTTSC-SSCEEE
T ss_pred hhHHHHHccCCEEEEeCCCCccCHHHHHhcC-CCCEEE
Confidence 5689999999999998863333334555554 344443
No 141
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=55.41 E-value=59 Score=23.85 Aligned_cols=77 Identities=10% Similarity=0.126 Sum_probs=45.4
Q ss_pred ceEEE-EEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHH--HcCC
Q psy15555 325 NLKLI-FIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECM--AAGL 401 (488)
Q Consensus 325 ~~~l~-ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~--a~G~ 401 (488)
..+.+ +.|.|-.. + -..+.+++.+++.|++-.|.-.+. .++...+..+|+++.+...... ..=++.. -.|+
T Consensus 4 ~mkIlvvC~~G~~T-S-ll~~kl~~~~~~~gi~~~i~~~~~---~~~~~~~~~~D~Ii~t~~l~~~-~~~~~~~~~~~~~ 77 (109)
T 2l2q_A 4 SMNILLVCGAGMST-S-MLVQRIEKYAKSKNINATIEAIAE---TRLSEVVDRFDVVLLAPQSRFN-KKRLEEITKPKGI 77 (109)
T ss_dssp CEEEEEESSSSCSS-C-HHHHHHHHHHHHHTCSEEEEEECS---TTHHHHTTTCSEEEECSCCSSH-HHHHHHHHHHHTC
T ss_pred ceEEEEECCChHhH-H-HHHHHHHHHHHHCCCCeEEEEecH---HHHHhhcCCCCEEEECCccHHH-HHHHHHHhcccCC
Confidence 34444 45555433 3 555789999999887534433333 6777778899987776533211 2223333 2589
Q ss_pred cEEEeC
Q psy15555 402 IMIAHK 407 (488)
Q Consensus 402 PvI~~~ 407 (488)
||+.-+
T Consensus 78 pv~~I~ 83 (109)
T 2l2q_A 78 PIEIIN 83 (109)
T ss_dssp CEEECC
T ss_pred CEEEEC
Confidence 998654
No 142
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=55.36 E-value=14 Score=27.27 Aligned_cols=52 Identities=10% Similarity=0.027 Sum_probs=35.1
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcC
Q psy15555 328 LIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAM 384 (488)
Q Consensus 328 l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s 384 (488)
+++.|.|-... -..+.+++.+++.|++-.|.-.+. .++......+|+++.++
T Consensus 7 ll~Cg~G~sTS--~l~~k~~~~~~~~gi~~~i~a~~~---~~~~~~~~~~Dvil~~p 58 (106)
T 1e2b_A 7 YLFSSAGMSTS--LLVSKMRAQAEKYEVPVIIEAFPE---TLAGEKGQNADVVLLGP 58 (106)
T ss_dssp EEECSSSTTTH--HHHHHHHHHHHHSCCSEEEEEECS---SSTTHHHHHCSEEEECT
T ss_pred EEECCCchhHH--HHHHHHHHHHHHCCCCeEEEEecH---HHHHhhccCCCEEEEcc
Confidence 55667665332 455789999999998644433333 56666788999877664
No 143
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=55.04 E-value=34 Score=25.78 Aligned_cols=107 Identities=13% Similarity=0.072 Sum_probs=62.4
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhC--cEEEEcC-CC-----CcCCccHHHH
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEG--LIGLHAM-WN-----EHFGIGIVEC 396 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~a--d~~v~~s-~~-----e~~g~~~lEa 396 (488)
..+++|+.+.+ ...+.+++.+++.|. .|.... +.++....+... |+++.-. .. +.-|..+++.
T Consensus 3 ~~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~ 73 (140)
T 2qr3_A 3 LGTIIIVDDNK-----GVLTAVQLLLKNHFS--KVITLS--SPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHE 73 (140)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHTTTSS--EEEEEC--CHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHH
T ss_pred CceEEEEeCCH-----HHHHHHHHHHHhCCc--EEEEeC--CHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHH
Confidence 45677777654 555777777776654 344444 337777777664 5555433 22 3334555555
Q ss_pred HH---cCCcEEEeCCCCCc---cceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 397 MA---AGLIMIAHKSGGPK---MDIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 397 ~a---~G~PvI~~~~~~~~---~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
+. ..+|+|........ .+..+.+ ..+++.. +.+++.+++..++.
T Consensus 74 l~~~~~~~~ii~ls~~~~~~~~~~~~~~g----~~~~l~kp~~~~~l~~~l~~~~~ 125 (140)
T 2qr3_A 74 IKRQYRDLPVVLFTAYADIDLAVRGIKEG----ASDFVVKPWDNQKLLETLLNAAS 125 (140)
T ss_dssp HHHHCTTCCEEEEEEGGGHHHHHHHHHTT----CCEEEEESCCHHHHHHHHHHHHT
T ss_pred HHhhCcCCCEEEEECCCCHHHHHHHHHcC----chheeeCCCCHHHHHHHHHHHHH
Confidence 43 47888774322221 1233333 4566654 89999999999887
No 144
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=54.86 E-value=70 Score=26.20 Aligned_cols=120 Identities=13% Similarity=0.189 Sum_probs=71.8
Q ss_pred CChHHHHHHHHHhHHhhhhhccCceEEEE---EecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCc
Q psy15555 302 KDHPLQLRAMYQLRQIISEELWDNLKLIF---IGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGL 378 (488)
Q Consensus 302 k~~~~ll~a~~~l~~~~~~~~~~~~~l~i---vG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad 378 (488)
+....+-+..+.|.+++ -++++-| +|+-| -.+.-+..+.+++-.+.+ ..+|+..-+...|
T Consensus 61 qAQ~~v~el~~~L~~~G-----~~V~faIHPVAGRMP--------GhMNVLLAEA~VPYd~v~----EMdeIN~df~~tD 123 (203)
T 2fsv_C 61 QAQHALREMADVLKKEG-----VEVSYAIHPVAGRMP--------GHMNVLLAEANVPYDEVF----ELEEINSSFQTAD 123 (203)
T ss_dssp TCHHHHHHHHHHHHHTT-----CEEEEEECTTCSSST--------THHHHHHHHTTCCGGGEE----EHHHHGGGSTTCS
T ss_pred HHHHHHHHHHHHHHHcC-----CeEEEEecccccCCC--------CCccEEEEEecCCHHHHh----hHHHHhhhhhhcC
Confidence 44555666666777766 6788877 55666 234445556555533222 2378888999999
Q ss_pred E-EEEcC------------CCCcCCccHHHHHHcCCcEEEeCC--C---CCccceeccCCCccccceecCCHHHHHHHHH
Q psy15555 379 I-GLHAM------------WNEHFGIGIVECMAAGLIMIAHKS--G---GPKMDIVIEDPETCRNGFLACDEVEYAQTIK 440 (488)
Q Consensus 379 ~-~v~~s------------~~e~~g~~~lEa~a~G~PvI~~~~--~---~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~ 440 (488)
+ +|.+. ...-+|+.++|..-+..-++.-.. . |....++-.. .+-.++.|..+-.+.|.
T Consensus 124 v~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~----nt~MlfGDAK~~~~~l~ 199 (203)
T 2fsv_C 124 VAFVIGANDVTNPAAKTDPSSPIYGMPILDVWKAGTVLFIKRSMASGYAGVENELFFRN----NTMMLFGDAKKMTEQIV 199 (203)
T ss_dssp EEEEESCCGGGCGGGTSCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCCCGGGGST----TEEEEESCHHHHHHHHH
T ss_pred EEEEeccccccCchhhcCCCCCcCCCeeeccccCCEEEEEECCCCCCcCCCcCcceecC----CceEEeccHHHHHHHHH
Confidence 4 44432 122378889999888877776333 2 2222334333 45566678877776665
Q ss_pred HH
Q psy15555 441 LI 442 (488)
Q Consensus 441 ~l 442 (488)
..
T Consensus 200 ~~ 201 (203)
T 2fsv_C 200 QA 201 (203)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 145
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=54.50 E-value=49 Score=24.41 Aligned_cols=108 Identities=12% Similarity=0.148 Sum_probs=62.9
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcCC-CCcCCccHHHHHH---
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAMW-NEHFGIGIVECMA--- 398 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s~-~e~~g~~~lEa~a--- 398 (488)
..++.++.+.+ ...+.+....+..|. ..+.... +.++....+.. .|+++.-.. .+.-|..+++.+.
T Consensus 6 ~~~ilivdd~~-----~~~~~l~~~L~~~g~-~~v~~~~--~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~ 77 (129)
T 1p6q_A 6 KIKVLIVDDQV-----TSRLLLGDALQQLGF-KQITAAG--DGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANP 77 (129)
T ss_dssp CCCEEEECSSH-----HHHHHHHHHHHTTTC-SCEECCS--SHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCT
T ss_pred cCeEEEEcCCH-----HHHHHHHHHHHHCCC-cEEEecC--CHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHhcCc
Confidence 45677787664 555677777776654 1343333 33666666664 466665432 3334566777664
Q ss_pred --cCCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 --AGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 --~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..+|+|.....+..+ +..+.+ ..+++.. +.+++.+++..++.
T Consensus 78 ~~~~~~ii~~s~~~~~~~~~~~~~~g----~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 78 ATKKAAFIILTAQGDRALVQKAAALG----ANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp TSTTCEEEECCSCCCHHHHHHHHHHT----CSCEECCCSSHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHcC----CCEEEECCCCHHHHHHHHHHHHH
Confidence 357777743332221 223333 5577765 89999999888764
No 146
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=54.43 E-value=60 Score=24.30 Aligned_cols=105 Identities=8% Similarity=0.109 Sum_probs=57.3
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcCCCCcCCccHHHHHH--c
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAMWNEHFGIGIVECMA--A 399 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s~~e~~g~~~lEa~a--~ 399 (488)
...+++|+.+.+ ...+.+.+.++..|. .|..... .++....+.. .|+++ ..+.-|..+++.+. .
T Consensus 17 ~~~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~~--~~~al~~l~~~~~dlvi---~~~~~g~~~~~~l~~~~ 84 (137)
T 2pln_A 17 GSMRVLLIEKNS-----VLGGEIEKGLNVKGF--MADVTES--LEDGEYLMDIRNYDLVM---VSDKNALSFVSRIKEKH 84 (137)
T ss_dssp TCSEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEESC--HHHHHHHHHHSCCSEEE---ECSTTHHHHHHHHHHHS
T ss_pred CCCeEEEEeCCH-----HHHHHHHHHHHHcCc--EEEEeCC--HHHHHHHHHcCCCCEEE---EcCccHHHHHHHHHhcC
Confidence 345667776553 455666666666553 3443333 2565555554 35555 22233455555544 3
Q ss_pred -CCcEEEeCCCCCcc---ceeccCCCccccceecC---CHHHHHHHHHHHHc
Q psy15555 400 -GLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC---DEVEYAQTIKLILH 444 (488)
Q Consensus 400 -G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~---~~~~l~~~i~~ll~ 444 (488)
.+|||........+ +.++.+ ..+++.. +.+++.++|..++.
T Consensus 85 ~~~~ii~ls~~~~~~~~~~~~~~g----~~~~l~kP~~~~~~l~~~i~~~~~ 132 (137)
T 2pln_A 85 SSIVVLVSSDNPTSEEEVHAFEQG----ADDYIAKPYRSIKALVARIEARLR 132 (137)
T ss_dssp TTSEEEEEESSCCHHHHHHHHHTT----CSEEEESSCSCHHHHHHHHHHHTC
T ss_pred CCccEEEEeCCCCHHHHHHHHHcC----CceeeeCCCCCHHHHHHHHHHHHh
Confidence 77877743322211 223333 4566643 78899999988876
No 147
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=54.42 E-value=7.8 Score=36.04 Aligned_cols=59 Identities=8% Similarity=-0.026 Sum_probs=46.9
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCC
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMW 385 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~ 385 (488)
+.--+|+|.-......+-.+.+++++++.|....+..+|.++.+.|..+ ..|+||..+.
T Consensus 265 ~~~GIIvgTLg~Q~~~~~~~~L~~ll~~~Gkk~y~i~vg~inp~KLanF--~iD~fV~vaC 323 (378)
T 3lzd_A 265 KKFGVIVSIKKGQLRLAEAKRIVKLLKKHGREARLIVMNDVNYHKLEGF--PFEAYVVVAC 323 (378)
T ss_dssp CEEEEEEECSTTTCCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHTTS--CCSEEEECSC
T ss_pred CEEEEEEeCCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCC--CCCEEEEecC
Confidence 4445778876556666778899999999998777888899998888877 4999998763
No 148
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=54.11 E-value=59 Score=23.50 Aligned_cols=105 Identities=6% Similarity=0.140 Sum_probs=58.2
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH---cC
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA---AG 400 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a---~G 400 (488)
++.++.+.+ ...+.+.+..+..|. .+..... ..+....+.. .|+++.-. ..+.-|..+++.+. ..
T Consensus 2 ~ilivdd~~-----~~~~~l~~~l~~~g~--~v~~~~~--~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~ 72 (121)
T 2pl1_A 2 RVLVVEDNA-----LLRHHLKVQIQDAGH--QVDDAED--AKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVS 72 (121)
T ss_dssp EEEEECSCH-----HHHHHHHHHHHHTTC--EEEEESS--HHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCC
T ss_pred eEEEEeCcH-----HHHHHHHHHHhhcCC--EEEEeCC--HHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCC
Confidence 345565543 455667777766653 3443333 3566665554 46655533 23334556666654 35
Q ss_pred CcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 401 LIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 401 ~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
+|+|......... +..+.+ ..+++.. +.+++...+..++.
T Consensus 73 ~~ii~~s~~~~~~~~~~~~~~g----~~~~l~kp~~~~~l~~~i~~~~~ 117 (121)
T 2pl1_A 73 LPILVLTARESWQDKVEVLSAG----ADDYVTKPFHIEEVMARMQALMR 117 (121)
T ss_dssp SCEEEEESCCCHHHHHHHHHTT----CSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHcC----ccceEECCCCHHHHHHHHHHHHH
Confidence 7777643322211 223333 5567765 88999998887764
No 149
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=53.98 E-value=60 Score=23.67 Aligned_cols=106 Identities=13% Similarity=0.005 Sum_probs=59.7
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH---c
Q psy15555 326 LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA---A 399 (488)
Q Consensus 326 ~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a---~ 399 (488)
.++.++.+.+ ...+.++...+..|. .+.... +..+....+.. .|+++.-. ..+.-|..+++.+. .
T Consensus 4 ~~ilivdd~~-----~~~~~l~~~l~~~~~--~v~~~~--~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~ 74 (124)
T 1srr_A 4 EKILIVDDQS-----GIRILLNEVFNKEGY--QTFQAA--NGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDE 74 (124)
T ss_dssp CEEEEECSCH-----HHHHHHHHHHHTTTC--EEEEES--SHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCT
T ss_pred ceEEEEeCCH-----HHHHHHHHHHHHCCc--EEEEeC--CHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHhCC
Confidence 3566777653 555677777776553 343333 33555555543 57655543 23334555665553 4
Q ss_pred CCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 GLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.+|+|........+ +..+.+ ..+++.. +.+++.+++.+++.
T Consensus 75 ~~~ii~~s~~~~~~~~~~~~~~g----~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 75 NIRVIIMTAYGELDMIQESKELG----ALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp TCEEEEEESSCCHHHHHHHHHHT----CCCEEESSCCHHHHHHHHHHHSC
T ss_pred CCCEEEEEccCchHHHHHHHhcC----hHhhccCCCCHHHHHHHHHHHhc
Confidence 67887643322211 223333 4567765 89999999988775
No 150
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=53.61 E-value=52 Score=24.81 Aligned_cols=105 Identities=9% Similarity=0.124 Sum_probs=59.1
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH---cC
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA---AG 400 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a---~G 400 (488)
+++++.+.+ ...+.+++..+..|. .|.... +..+....+.. .|+++.-. ..+.-|..+++.+. ..
T Consensus 6 ~ILivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~ 76 (137)
T 3cfy_A 6 RVLLVEDST-----SLAILYKQYVKDEPY--DIFHVE--TGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIP 76 (137)
T ss_dssp EEEEECSCT-----THHHHHHHHTTTSSS--EEEEES--SHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCC
T ss_pred eEEEEeCCH-----HHHHHHHHHHHhcCc--eEEEeC--CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCC
Confidence 567777665 444666666655443 344333 33565555543 57666543 23334555666554 46
Q ss_pred CcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 401 LIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 401 ~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
+|+|........+ +.++.+ ..+++.. +.+++.+++..++.
T Consensus 77 ~~ii~ls~~~~~~~~~~~~~~g----a~~~l~KP~~~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 77 TSVIIATAHGSVDLAVNLIQKG----AEDFLEKPINADRLKTSVALHLK 121 (137)
T ss_dssp CEEEEEESSCCHHHHHHHHHTT----CSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEEecCcHHHHHHHHHCC----ccEEEeCCCCHHHHHHHHHHHHH
Confidence 7777643322221 223334 5567765 89999999988775
No 151
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=53.28 E-value=73 Score=28.85 Aligned_cols=70 Identities=14% Similarity=0.108 Sum_probs=41.3
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHH--hCcEEEEcCCCCcCCccHHHHHHcCC
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS--EGLIGLHAMWNEHFGIGIVECMAAGL 401 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~--~ad~~v~~s~~e~~g~~~lEa~a~G~ 401 (488)
+++.++-+-+. +. +..++.+++.+.+. ..+++.+++. .+|+++..+....-.-.+.+++..|+
T Consensus 28 ~~~~l~av~d~-~~------~~~~~~~~~~~~~~--------~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk 92 (330)
T 3e9m_A 28 AQAEVRGIASR-RL------ENAQKMAKELAIPV--------AYGSYEELCKDETIDIIYIPTYNQGHYSAAKLALSQGK 92 (330)
T ss_dssp SSEEEEEEBCS-SS------HHHHHHHHHTTCCC--------CBSSHHHHHHCTTCSEEEECCCGGGHHHHHHHHHHTTC
T ss_pred CCcEEEEEEeC-CH------HHHHHHHHHcCCCc--------eeCCHHHHhcCCCCCEEEEcCCCHHHHHHHHHHHHCCC
Confidence 57776644332 11 44566666666431 1245566677 78866655433322234678999999
Q ss_pred cEEEeCC
Q psy15555 402 IMIAHKS 408 (488)
Q Consensus 402 PvI~~~~ 408 (488)
+|++-..
T Consensus 93 ~vl~EKP 99 (330)
T 3e9m_A 93 PVLLEKP 99 (330)
T ss_dssp CEEECSS
T ss_pred eEEEeCC
Confidence 9998654
No 152
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=53.20 E-value=60 Score=23.28 Aligned_cols=104 Identities=10% Similarity=0.079 Sum_probs=57.8
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcCC-CCcCCccHHHHHH---cC
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAMW-NEHFGIGIVECMA---AG 400 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s~-~e~~g~~~lEa~a---~G 400 (488)
++.++.+.+ ...+.+++..+..|. .+..... .++....+.. .|+++.-.. .+.-|..+++.+. ..
T Consensus 3 ~ilivdd~~-----~~~~~l~~~l~~~~~--~v~~~~~--~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~ 73 (116)
T 3a10_A 3 RILVVDDEP-----NIRELLKEELQEEGY--EIDTAEN--GEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKD 73 (116)
T ss_dssp EEEEECSCH-----HHHHHHHHHHHHTTC--EEEEESS--HHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTT
T ss_pred EEEEEeCCH-----HHHHHHHHHHHHCCC--EEEEeCC--HHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCC
Confidence 456666553 555677777776654 3444333 3666666554 466555432 2334556666553 35
Q ss_pred CcEEEe-CCCCCccceeccCCCccccceecC--CHHHHHHHHHHHH
Q psy15555 401 LIMIAH-KSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLIL 443 (488)
Q Consensus 401 ~PvI~~-~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll 443 (488)
.|+|.. .......+....+ ..+++.+ +.+++.+++.+++
T Consensus 74 ~~ii~~s~~~~~~~~~~~~g----~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 74 AKIILLTAYSHYRSDMSSWA----ADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp CCEEEEESCGGGGGCGGGGG----SSEEEECCSSTHHHHHHHHHHT
T ss_pred CeEEEEECCcchHHHHHhcc----ccceEECCCCHHHHHHHHHHHh
Confidence 777763 3222211333333 5567765 8889988887764
No 153
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=52.68 E-value=78 Score=29.46 Aligned_cols=99 Identities=7% Similarity=-0.018 Sum_probs=52.4
Q ss_pred ChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEE
Q psy15555 303 DHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLH 382 (488)
Q Consensus 303 ~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~ 382 (488)
++..+++.+....... .+-++.|+............+.+.+.+.+.|..-.+.-+...+..++..-+..+|+++.
T Consensus 235 ~~~~~~~~~~~~~~~~-----~~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~ 309 (402)
T 1e5d_A 235 QCTFAVQKYVEYAEQK-----PTNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIV 309 (402)
T ss_dssp HHHHHHHHHHHHHHCC-----CCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHHHhcCC-----CCCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEE
Confidence 4566677766665543 24566666655544333334455555555454222222333445667777899996665
Q ss_pred cC--CCCcCCcc---HHHHHH----cCCcEEEe
Q psy15555 383 AM--WNEHFGIG---IVECMA----AGLIMIAH 406 (488)
Q Consensus 383 ~s--~~e~~g~~---~lEa~a----~G~PvI~~ 406 (488)
++ +.++.+-. .++.+. .|+++...
T Consensus 310 gsp~~~~~~~~~~~~~l~~l~~~~l~~k~~~~f 342 (402)
T 1e5d_A 310 GSPTHNNGILPYVAGTLQYIKGLRPQNKIGGAF 342 (402)
T ss_dssp ECCCBTTBCCHHHHHHHHHHHHTCCCSCEEEEE
T ss_pred ECCccCCCchHHHHHHHHHhhhcccCCCEEEEE
Confidence 55 33433332 334432 47777653
No 154
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=52.43 E-value=50 Score=28.74 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=24.0
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
|+|+++- ++.+| ..+.+++.+..|+.+++.+..+
T Consensus 1 ~~igvfD--SG~GG------ltv~~~l~~~lP~~~~iy~~D~ 34 (255)
T 2jfz_A 1 MKIGVFD--SGVGG------FSVLKSLLKARLFDEIIYYGDS 34 (255)
T ss_dssp CEEEEEE--SSSTT------HHHHHHHHHTTCCSEEEEEECT
T ss_pred CcEEEEE--CCccH------HHHHHHHHHHCCCCCEEEEeCC
Confidence 5788874 44455 5566888888888887766655
No 155
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=52.03 E-value=62 Score=24.10 Aligned_cols=108 Identities=14% Similarity=0.049 Sum_probs=59.0
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcCCC-CcCCccHHHHHH---c
Q psy15555 326 LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAMWN-EHFGIGIVECMA---A 399 (488)
Q Consensus 326 ~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s~~-e~~g~~~lEa~a---~ 399 (488)
.+++++.+.+ ...+.++...+..+-...+.... +..+....+.. .|+++.-... +.-|..+++.+. .
T Consensus 4 ~~Ilivdd~~-----~~~~~l~~~l~~~~~~~~v~~~~--~~~~al~~~~~~~~dlvilD~~lp~~~g~~~~~~l~~~~~ 76 (133)
T 3b2n_A 4 TSLIIAEDQN-----MLRQAMVQLIKLHGDFEILADTD--NGLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHL 76 (133)
T ss_dssp EEEEEECSCH-----HHHHHHHHHHHHHSSEEEEEEES--CHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTC
T ss_pred eEEEEECCCH-----HHHHHHHHHHhhCCCcEEEEEcC--CHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHHHCC
Confidence 3566666553 44566666666554111122222 33555555543 5766654432 334556666654 3
Q ss_pred CCcEEEeCCCCCc---cceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 GLIMIAHKSGGPK---MDIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 G~PvI~~~~~~~~---~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.+|||.-...... .+..+.+ ..+++.+ +.+++.+++.+++.
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~~~g----a~~~l~Kp~~~~~L~~~i~~~~~ 122 (133)
T 3b2n_A 77 NIKVIIVTTFKRPGYFEKAVVND----VDAYVLKERSIEELVETINKVNN 122 (133)
T ss_dssp SCEEEEEESCCCHHHHHHHHHTT----CSEEEETTSCHHHHHHHHHHHHC
T ss_pred CCcEEEEecCCCHHHHHHHHHcC----CcEEEECCCCHHHHHHHHHHHHc
Confidence 6788774332221 1233344 5677765 89999999998876
No 156
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A
Probab=51.84 E-value=68 Score=31.28 Aligned_cols=92 Identities=12% Similarity=0.099 Sum_probs=55.7
Q ss_pred HHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCC-----CcEEEecC----------CC-----
Q psy15555 307 QLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLE-----NNVEFKVN----------LP----- 366 (488)
Q Consensus 307 ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~-----~~v~~~g~----------~~----- 366 (488)
++.|++...++. .+.++++.|.|... ....+.+.....+.|++ .+|.+.+. ++
T Consensus 269 llnAlki~gk~l-----~d~riv~~GAGaAg--~gia~ll~~~~~~~G~~~eeA~~~i~~~D~~Gli~~~r~~l~~~k~~ 341 (555)
T 1gq2_A 269 LLAALRITKNRL-----SDHTVLFQGAGEAA--LGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEH 341 (555)
T ss_dssp HHHHHHHHTSCG-----GGCCEEEECCSHHH--HHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGGG
T ss_pred HHHHHHHhCCCh-----hhcEEEEECCCHHH--HHHHHHHHHHHHHcCCChHHHhCcEEEEECCCeeeCCCCCchHHHHH
Confidence 445555444444 57889999988421 11122333333335763 45555421 11
Q ss_pred -------hHHHHHHHHh--CcEEEEcCC-CCcCCccHHHHHHc--CCcEEE
Q psy15555 367 -------YEDMKKEFSE--GLIGLHAMW-NEHFGIGIVECMAA--GLIMIA 405 (488)
Q Consensus 367 -------~~el~~~~~~--ad~~v~~s~-~e~~g~~~lEa~a~--G~PvI~ 405 (488)
.+.+.+.+.. +|++|+.|. ...|.--++++|+. -.|||.
T Consensus 342 ~A~~~~~~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIF 392 (555)
T 1gq2_A 342 FAHEHCEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIF 392 (555)
T ss_dssp GCBSCCCCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEE
T ss_pred HHhhcCCCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 1358888986 999999995 56677789999983 666666
No 157
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=51.57 E-value=43 Score=25.13 Aligned_cols=107 Identities=12% Similarity=0.050 Sum_probs=61.5
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh-CcEEEEcC-CCCcCCccHHHHHHc---
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE-GLIGLHAM-WNEHFGIGIVECMAA--- 399 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~-ad~~v~~s-~~e~~g~~~lEa~a~--- 399 (488)
..++.++.+.+ ...+.+....+..|. .|.... +.++....+.. .|+++.-. ..+.-|..+++.+..
T Consensus 7 ~~~ILivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~a~~~~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~ 77 (136)
T 1dcf_A 7 GLKVLVMDENG-----VSRMVTKGLLVHLGC--EVTTVS--SNEECLRVVSHEHKVVFMDVCMPGVENYQIALRIHEKFT 77 (136)
T ss_dssp TCEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEES--SHHHHHHHCCTTCSEEEEECCSSTTTTTHHHHHHHHHHC
T ss_pred CCeEEEEeCCH-----HHHHHHHHHHHHcCC--eEEEeC--CHHHHHHHHhccCCEEEEeCCCCCCcHHHHHHHHHHhhh
Confidence 45777887654 555677777776654 344333 33566665543 27665543 334456667766641
Q ss_pred ----CCc-EE-EeCCCCCc--cceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 ----GLI-MI-AHKSGGPK--MDIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 ----G~P-vI-~~~~~~~~--~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..| +| .+...... .+..+.+ ..+++.+ +.+++.+++.+++.
T Consensus 78 ~~~~~~~~ii~~s~~~~~~~~~~~~~~g----a~~~l~KP~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 78 KQRHQRPLLVALSGNTDKSTKEKCMSFG----LDGVLLKPVSLDNIRDVLSDLLE 128 (136)
T ss_dssp -CCSCCCEEEEEESCCSHHHHHHHHHTT----CCEEEESSCCHHHHHHHHHHHHS
T ss_pred hccCCCceEEEEeCCCCHHHHHHHHHcC----CCeEEECCCCHHHHHHHHHHHhc
Confidence 234 54 34443221 1223334 5677765 89999999998876
No 158
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=51.41 E-value=49 Score=26.50 Aligned_cols=95 Identities=8% Similarity=0.048 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCCCcEEEecCCChHHHHHHHH----hCc-EEEEcCCCCcCCccHHHHH-HcCCcEEEeCCCCC-ccc--
Q psy15555 344 KDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS----EGL-IGLHAMWNEHFGIGIVECM-AAGLIMIAHKSGGP-KMD-- 414 (488)
Q Consensus 344 ~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~----~ad-~~v~~s~~e~~g~~~lEa~-a~G~PvI~~~~~~~-~~e-- 414 (488)
+.+++.+.++|+. +.+...=..+|+.+.+. .+| +++.|..+-..+..+.+|+ +.++|+|=-..... .+|
T Consensus 60 ~~l~~~a~~~G~~--l~~~QSN~EGeLId~Ih~A~~~~dgIIINPgAyTHtSvAlrDAL~~v~~P~VEVHiSNihaRE~F 137 (172)
T 3n8k_A 60 ALIEREAAELGLK--AVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSVALRDACAELSAPLIEVHISNVHAREEF 137 (172)
T ss_dssp HHHHHHHHHTTCE--EEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCHHHHHHHTTCCSCEEEEESSCTTSSCGG
T ss_pred HHHHHHHHHcCCE--EEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhHHHHHHHHhCCCCEEEEEcCCchhcccc
Confidence 4444555555542 44443334455555544 457 7888888888899999998 45899987333222 123
Q ss_pred ----eeccCCCccccceecC-CHHHHHHHHHHHHc
Q psy15555 415 ----IVIEDPETCRNGFLAC-DEVEYAQTIKLILH 444 (488)
Q Consensus 415 ----iv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~ 444 (488)
++.+. ..|.++. -.+...-++..+++
T Consensus 138 RhhS~is~~----a~GvI~G~G~~gY~lAl~al~~ 168 (172)
T 3n8k_A 138 RRHSYLSPI----ATGVIVGLGIQGYLLALRYLAE 168 (172)
T ss_dssp GGCCSSGGG----SSEEEESSTTHHHHHHHHHHHH
T ss_pred ccccccccc----ceEEEEeCChHHHHHHHHHHHH
Confidence 33333 4566665 56666666665543
No 159
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}
Probab=50.97 E-value=38 Score=32.33 Aligned_cols=36 Identities=3% Similarity=-0.073 Sum_probs=26.2
Q ss_pred HHHHHHHhCcEEEEcCCC--CcCCccHHHHHHcCCcEEE
Q psy15555 369 DMKKEFSEGLIGLHAMWN--EHFGIGIVECMAAGLIMIA 405 (488)
Q Consensus 369 el~~~~~~ad~~v~~s~~--e~~g~~~lEa~a~G~PvI~ 405 (488)
.+.+.+..+|+||+.|.. ..|.--++++|+ -.|||.
T Consensus 287 ~L~eav~~adVlIG~S~~~pg~ft~e~V~~Ma-~~PIIF 324 (487)
T 3nv9_A 287 SIAEACVGADVLISLSTPGPGVVKAEWIKSMG-EKPIVF 324 (487)
T ss_dssp SHHHHHTTCSEEEECCCSSCCCCCHHHHHTSC-SSCEEE
T ss_pred CHHHHHhcCCEEEEecccCCCCCCHHHHHhhc-CCCEEE
Confidence 467778889999999954 445556777775 577776
No 160
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=50.87 E-value=1.1e+02 Score=25.55 Aligned_cols=107 Identities=8% Similarity=0.067 Sum_probs=63.8
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH---
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA--- 398 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a--- 398 (488)
..++.|+.+.+ ...+.+....+..|. .|.... +.++....+.. .|+++.-. ..+.-|..+++.+.
T Consensus 7 ~~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~ 77 (233)
T 1ys7_A 7 SPRVLVVDDDS-----DVLASLERGLRLSGF--EVATAV--DGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMD 77 (233)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEES--SHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTT
T ss_pred CCeEEEEeCCH-----HHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 45778887764 555777777777654 344333 33666666654 46555443 33344566666654
Q ss_pred cCCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 AGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 ~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.++|||........+ +.++.+ ..+++.. +.+++.+++..++.
T Consensus 78 ~~~~ii~lt~~~~~~~~~~~~~~g----a~~~l~Kp~~~~~L~~~i~~~~~ 124 (233)
T 1ys7_A 78 NDVPVCVLSARSSVDDRVAGLEAG----ADDYLVKPFVLAELVARVKALLR 124 (233)
T ss_dssp CCCCEEEEECCCTTTCCCTTTTTT----CSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCHHHHHHHHHcC----CCEEEeCCCCHHHHHHHHHHHHh
Confidence 478888743322221 233333 5677765 89999999988765
No 161
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=50.54 E-value=8.3 Score=34.46 Aligned_cols=44 Identities=18% Similarity=0.002 Sum_probs=31.0
Q ss_pred HHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCC
Q psy15555 368 EDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGP 411 (488)
Q Consensus 368 ~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~ 411 (488)
+++.+++..+|+.|-.|..+..--++..++..|+|+|++..+..
T Consensus 80 ~dl~~ll~~aDVvIDFT~p~a~~~~~~~~l~~Gv~vViGTTG~~ 123 (288)
T 3ijp_A 80 DDPESAFSNTEGILDFSQPQASVLYANYAAQKSLIHIIGTTGFS 123 (288)
T ss_dssp SCHHHHTTSCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCC
T ss_pred CCHHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 35667778999888666544333345678889999999776643
No 162
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=50.42 E-value=1.1e+02 Score=26.59 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=24.5
Q ss_pred CCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHHc
Q psy15555 400 GLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILH 444 (488)
Q Consensus 400 G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~ 444 (488)
++||+++-..-.. +....- +.....+|..+..+.+.+++.
T Consensus 204 ~~~v~vGG~~~~~-~~~~~i----gad~~~~da~~av~~~~~l~~ 243 (258)
T 2i2x_B 204 KIPFACGGGAVNQ-DFVSQF----ALGVYGEEAADAPKIADAIIA 243 (258)
T ss_dssp CCCEEEESTTCCH-HHHHTS----TTEEECSSTTHHHHHHHHHHT
T ss_pred CCcEEEECccCCH-HHHHHc----CCeEEECCHHHHHHHHHHHHc
Confidence 4777776543332 444332 333445688888888888886
No 163
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=50.23 E-value=19 Score=31.73 Aligned_cols=75 Identities=8% Similarity=-0.055 Sum_probs=45.1
Q ss_pred ChHHHHHHHHhCcE-EEEcCCCCcCCc-cHHHHHHcCCc-EEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHH
Q psy15555 366 PYEDMKKEFSEGLI-GLHAMWNEHFGI-GIVECMAAGLI-MIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKL 441 (488)
Q Consensus 366 ~~~el~~~~~~ad~-~v~~s~~e~~g~-~~lEa~a~G~P-vI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ 441 (488)
|.+....++..||+ ++.+|..-+..+ .++|..-.+.+ |+.++......++++.+ .+.-.|..+.|++.+.+.+.+
T Consensus 176 p~~~~e~ll~~aD~viiTGsTlvN~Ti~~lL~~~~~a~~vvl~GPS~p~~P~lf~~G-v~~l~G~~V~D~~~~~~~i~~ 253 (270)
T 2h1q_A 176 PLPASEFILPECDYVYITCASVVDKTLPRLLELSRNARRITLVGPGTPLAPVLFEHG-LQELSGFMVKDNARAFRIVAG 253 (270)
T ss_dssp EGGGHHHHGGGCSEEEEETHHHHHTCHHHHHHHTTTSSEEEEESTTCCCCGGGGGTT-CSEEEEEEESCHHHHHHHHTT
T ss_pred ChHHHHHHhhcCCEEEEEeeeeecCCHHHHHHhCccCCeEEEEecChhhhHHHHhcC-cCEEEEeEecCHHHHHHHHHc
Confidence 44567778999995 455443222222 35666655534 45555544444666654 555667778899888777653
No 164
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=50.03 E-value=8.5 Score=31.53 Aligned_cols=69 Identities=9% Similarity=-0.056 Sum_probs=41.2
Q ss_pred HHHHhCcEEEEcCCCCcCCc--cHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHHHHc
Q psy15555 372 KEFSEGLIGLHAMWNEHFGI--GIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILH 444 (488)
Q Consensus 372 ~~~~~ad~~v~~s~~e~~g~--~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~ 444 (488)
.+...||++|... .++|. .+.|++..++||+.-+..+..+..+.+. ....-.+++|++++.+.+.+++.
T Consensus 103 ~m~~~sda~Ivlp--Gg~GTL~E~~~al~~~kpV~~l~~~~~~~gfi~~~--~~~~i~~~~~~~e~~~~l~~~~~ 173 (176)
T 2iz6_A 103 INALSSNVLVAVG--MGPGTAAEVALALKAKKPVVLLGTQPEAEKFFTSL--DAGLVHVAADVAGAIAAVKQLLA 173 (176)
T ss_dssp CCGGGCSEEEEES--CCHHHHHHHHHHHHTTCCEEEESCCHHHHHHHHHH--CTTTEEEESSHHHHHHHHHHHHH
T ss_pred HHHHhCCEEEEec--CCccHHHHHHHHHHhCCcEEEEcCcccccccCChh--hcCeEEEcCCHHHHHHHHHHHHH
Confidence 3455688555432 12332 4688999999999987632211222221 01223446699999999988775
No 165
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=49.35 E-value=59 Score=26.08 Aligned_cols=119 Identities=13% Similarity=0.159 Sum_probs=69.4
Q ss_pred CChHHHHHHHHHhHHhhhhhccCceEEEE---EecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCc
Q psy15555 302 KDHPLQLRAMYQLRQIISEELWDNLKLIF---IGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGL 378 (488)
Q Consensus 302 k~~~~ll~a~~~l~~~~~~~~~~~~~l~i---vG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad 378 (488)
+....+-+..+.|.+++ .++++-| +|+-|.. +.-+..+.+++-.+.+ .+ +|+..-+...|
T Consensus 45 qAQ~~v~el~~~L~~~G-----~~V~faIHPVAGRMPGh--------MNVLLAEA~VPYd~v~--EM--deIN~df~~tD 107 (186)
T 2bru_C 45 QAQYPVAEITEKLRARG-----INVRFGIHPVAGRLPGH--------MNVLLAEAKVPYDIVL--EM--DEINDDFADTD 107 (186)
T ss_dssp TTHHHHHHHHHHHHHHC-----CEEEEEECSSSSSSSST--------HHHHHHHHTCCTTTEE--ES--CCCHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHCC-----CeEEEEeccccccCCCc--------ceEEEEecCCCHHHHh--hH--HHHhcccccCC
Confidence 34455666677777776 7888887 5666633 3445555565533322 22 67788899999
Q ss_pred E-EEEcC-------C-----CCcCCccHHHHHHcCCcEEEeCC--CC---CccceeccCCCccccceecCCHHHHHHHHH
Q psy15555 379 I-GLHAM-------W-----NEHFGIGIVECMAAGLIMIAHKS--GG---PKMDIVIEDPETCRNGFLACDEVEYAQTIK 440 (488)
Q Consensus 379 ~-~v~~s-------~-----~e~~g~~~lEa~a~G~PvI~~~~--~~---~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~ 440 (488)
+ +|.+. . ..-+|+.++|..-+..-++.-.. .| ....++-.. .+..++.|..+-.+.+.
T Consensus 108 v~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~----nt~MlfGDAK~~~~~l~ 183 (186)
T 2bru_C 108 TVLVIGANDTVNPAAQDDPKSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKE----NTHMLFGDAKASVDAIL 183 (186)
T ss_dssp EEEECBCGGGGCGGGTTSTTSSSTTCCCCCCTTSSEEEEECSSSCCSSCCCSCTTTBSS----SEEEECSCHHHHHHHHH
T ss_pred EEEEeccccccCccccCCCCCCcCCCeeeccccCCEEEEEECCCCCCcCCCcCcceecC----CceEEeccHHHHHHHHH
Confidence 4 44332 1 22367888888877766666332 22 222233333 45566668777666654
Q ss_pred H
Q psy15555 441 L 441 (488)
Q Consensus 441 ~ 441 (488)
.
T Consensus 184 ~ 184 (186)
T 2bru_C 184 K 184 (186)
T ss_dssp H
T ss_pred H
Confidence 3
No 166
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=48.99 E-value=90 Score=28.15 Aligned_cols=34 Identities=12% Similarity=-0.046 Sum_probs=21.1
Q ss_pred cccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 51 VLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 51 ~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
++|||+|+ |....+....++|.+. +++++.+.+.
T Consensus 2 ~~mrIvf~--------Gt~~fa~~~L~~L~~~--~~~i~~Vvt~ 35 (314)
T 1fmt_A 2 ESLRIIFA--------GTPDFAARHLDALLSS--GHNVVGVFTQ 35 (314)
T ss_dssp CCCEEEEE--------ECSHHHHHHHHHHHHT--TCEEEEEECC
T ss_pred CCCEEEEE--------ecCHHHHHHHHHHHHC--CCcEEEEEeC
Confidence 36999997 3444556666787776 4555544443
No 167
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=48.60 E-value=86 Score=26.45 Aligned_cols=106 Identities=8% Similarity=0.087 Sum_probs=60.9
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHHc--C
Q psy15555 326 LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMAA--G 400 (488)
Q Consensus 326 ~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a~--G 400 (488)
.+++|+.+.+ ...+.+....+..|. .|...... ++....+.. .|+++.-. ..+.-|..+++.+.. +
T Consensus 6 ~~ILivdd~~-----~~~~~l~~~L~~~g~--~v~~~~~~--~~al~~l~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~ 76 (238)
T 2gwr_A 6 QRILVVDDDA-----SLAEMLTIVLRGEGF--DTAVIGDG--TQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRADSG 76 (238)
T ss_dssp CEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEECCG--GGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHTTCC
T ss_pred CeEEEEeCCH-----HHHHHHHHHHHHCCC--EEEEECCH--HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCC
Confidence 4677777654 555677777776654 24444432 555555543 56655443 333345566665543 6
Q ss_pred CcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 401 LIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 401 ~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
+|||.-......+ +.++.+ ..+++.. +.+++.++|..++.
T Consensus 77 ~~ii~lt~~~~~~~~~~~~~~G----a~~~l~Kp~~~~~L~~~i~~~~~ 121 (238)
T 2gwr_A 77 VPIVMLTAKTDTVDVVLGLESG----ADDYIMKPFKPKELVARVRARLR 121 (238)
T ss_dssp CCEEEEEETTCCSCHHHHHHTT----CCEEEEESCCHHHHHHHHHHHCC
T ss_pred CcEEEEeCCCCHHHHHHHHHCC----CCEEEeCCCCHHHHHHHHHHHHh
Confidence 8887733222211 233334 5667754 89999999998875
No 168
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=48.27 E-value=70 Score=27.75 Aligned_cols=70 Identities=13% Similarity=-0.012 Sum_probs=43.7
Q ss_pred HHHHhCc-EEEEcCCCCcCCc-cHHHHHHcCCc-EEEeCCCCCccceeccCCCccccceecCCHHHHHHHHHH
Q psy15555 372 KEFSEGL-IGLHAMWNEHFGI-GIVECMAAGLI-MIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKL 441 (488)
Q Consensus 372 ~~~~~ad-~~v~~s~~e~~g~-~~lEa~a~G~P-vI~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ 441 (488)
.++..|| +++.+|..-+..+ .++|....+.+ |+.++......+.+.+.+.+.-.|..+.|++.+.+.|..
T Consensus 160 ~~l~~~D~v~iTGsTlvN~Ti~~lL~~~~~~~~vvl~GPS~~~~P~~~~~~Gv~~l~g~~v~d~~~~l~~i~~ 232 (249)
T 3npg_A 160 HILPEVDGIIASASCIVNGTLDMILDRAKKAKLIVITGPTGQLLPEFLKGTKVTHLASMKVTNIEKALVKLKL 232 (249)
T ss_dssp HHGGGCSEEEEETTHHHHTCHHHHHHHCSSCSEEEEESGGGCSCGGGGTTSSCCEEEEEEESCHHHHHHHHHH
T ss_pred hhhccCCEEEEEeeeeccCCHHHHHHhCcccCeEEEEecCchhhHHHHhhCCccEEEEEEecCHHHHHHHHHc
Confidence 5899999 4555553222222 36676666766 666776555557764332455667778899888877754
No 169
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=48.23 E-value=81 Score=23.37 Aligned_cols=106 Identities=11% Similarity=0.045 Sum_probs=60.3
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH---c
Q psy15555 326 LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA---A 399 (488)
Q Consensus 326 ~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a---~ 399 (488)
.++.|+.+.+ ...+.+.......|. .+..... ..+....+.. .|+++.-. ..+.-|..+++.+. .
T Consensus 4 ~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~~--~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~ 74 (136)
T 1mvo_A 4 KKILVVDDEE-----SIVTLLQYNLERSGY--DVITASD--GEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKL 74 (136)
T ss_dssp CEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEESS--HHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTC
T ss_pred CEEEEEECCH-----HHHHHHHHHHHHCCc--EEEEecC--HHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCC
Confidence 4567777653 555667777776654 3443333 3555555543 57655543 33334555665553 4
Q ss_pred CCcEEEe-CCCCCc--cceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 GLIMIAH-KSGGPK--MDIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 G~PvI~~-~~~~~~--~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.+|+|.. ...... .+..+.+ ..+++.. +.+++...+..++.
T Consensus 75 ~~~ii~~s~~~~~~~~~~~~~~g----~~~~l~KP~~~~~l~~~i~~~~~ 120 (136)
T 1mvo_A 75 MFPILMLTAKDEEFDKVLGLELG----ADDYMTKPFSPREVNARVKAILR 120 (136)
T ss_dssp CCCEEEEECTTCCCCHHHHHHTT----CCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHhCC----CCEEEECCCCHHHHHHHHHHHHH
Confidence 5777763 322221 1223334 5677765 89999999998876
No 170
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=48.12 E-value=55 Score=27.07 Aligned_cols=108 Identities=12% Similarity=0.037 Sum_probs=57.0
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHH---------------hCcEEEEcC-CCCc
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS---------------EGLIGLHAM-WNEH 388 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~---------------~ad~~v~~s-~~e~ 388 (488)
..+++|+-+.+ ...+.+.+.+++.|.. .|...... ++..+.+. ..|+++.-. ..+.
T Consensus 61 ~~~ILiVdDd~-----~~~~~l~~~L~~~g~~-~v~~a~~~--~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~ 132 (206)
T 3mm4_A 61 GKRVLVVDDNF-----ISRKVATGKLKKMGVS-EVEQCDSG--KEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEM 132 (206)
T ss_dssp TCEEEEECSCH-----HHHHHHHHHHHHTTCS-EEEEESSH--HHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSS
T ss_pred CCEEEEEeCCH-----HHHHHHHHHHHHcCCC-eeeeeCCH--HHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCC
Confidence 44566666543 4445566666665532 34333332 55555554 356555433 3333
Q ss_pred CCccHHHHHH-------cCCcEEEeCCCC-Ccc---ceeccCCCccccceecCCHHHHHHHHHHHHc
Q psy15555 389 FGIGIVECMA-------AGLIMIAHKSGG-PKM---DIVIEDPETCRNGFLACDEVEYAQTIKLILH 444 (488)
Q Consensus 389 ~g~~~lEa~a-------~G~PvI~~~~~~-~~~---eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~ 444 (488)
-|..+++.+. ..+|||...... ..+ +..+.+ ..+++.+..++|.++|.+++.
T Consensus 133 ~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~G----a~~~l~KP~~~L~~~i~~~l~ 195 (206)
T 3mm4_A 133 DGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAG----MDAFLDKSLNQLANVIREIES 195 (206)
T ss_dssp CHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHT----CSEEEETTCTTHHHHHHHHC-
T ss_pred CHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCC----CCEEEcCcHHHHHHHHHHHHh
Confidence 4556665553 467887743322 211 223333 566777644489999998886
No 171
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*
Probab=48.05 E-value=64 Score=31.79 Aligned_cols=92 Identities=11% Similarity=0.091 Sum_probs=55.4
Q ss_pred HHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCC-----CcEEEecC----------CC-----
Q psy15555 307 QLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLE-----NNVEFKVN----------LP----- 366 (488)
Q Consensus 307 ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~-----~~v~~~g~----------~~----- 366 (488)
++.|++...++. .+.++++.|.|... ....+.+.....+.|++ .+|.+.+. ++
T Consensus 307 llnAlki~gk~l-----~d~riv~~GAGaAg--igia~ll~~~m~~~Gl~~eeA~~~i~~vD~~Gli~~~r~~l~~~k~~ 379 (605)
T 1o0s_A 307 LLTCTRVTKKLV-----SQEKYLFFGAGAAS--TGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQ 379 (605)
T ss_dssp HHHHHHHHCCCG-----GGCCEEEECCSHHH--HHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTT
T ss_pred HHHHHHHhCCCh-----hhcEEEEECCCHHH--HHHHHHHHHHHHHcCCChhhhhCeEEEEECCCceeCCCCCchHHHHH
Confidence 344554444444 57899999988421 11122333333335663 34444321 11
Q ss_pred -------hHHHHHHHHh--CcEEEEcCC-CCcCCccHHHHHH--cCCcEEE
Q psy15555 367 -------YEDMKKEFSE--GLIGLHAMW-NEHFGIGIVECMA--AGLIMIA 405 (488)
Q Consensus 367 -------~~el~~~~~~--ad~~v~~s~-~e~~g~~~lEa~a--~G~PvI~ 405 (488)
.+.+.+.+.. +|+||+.|. ...|.--++++|+ +-.|||.
T Consensus 380 ~A~~~~~~~~L~eav~~vkpdVlIG~S~~~g~ft~evv~~Ma~~~~~PIIF 430 (605)
T 1o0s_A 380 FAKDMPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIF 430 (605)
T ss_dssp TCBSSCCCCCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEE
T ss_pred HHhhcCCCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 1358889986 999999995 5667778999998 3677776
No 172
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=48.00 E-value=63 Score=23.83 Aligned_cols=108 Identities=7% Similarity=0.012 Sum_probs=61.5
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHHc-
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMAA- 399 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a~- 399 (488)
...++.++.+.+ ...+.+.+..++.|. .+.... +.++..+.+.. .|+++.-. ..+.-|..+++.+..
T Consensus 6 ~~~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 76 (130)
T 3eod_A 6 VGKQILIVEDEQ-----VFRSLLDSWFSSLGA--TTVLAA--DGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNR 76 (130)
T ss_dssp TTCEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEES--CHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHT
T ss_pred CCCeEEEEeCCH-----HHHHHHHHHHHhCCc--eEEEeC--CHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 356778887654 556777887877764 344433 44677776654 46655543 334456666665543
Q ss_pred --CCcEEEeCCCCCcc---ceeccCCCccccceecC---CHHHHHHHHHHHHc
Q psy15555 400 --GLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC---DEVEYAQTIKLILH 444 (488)
Q Consensus 400 --G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~---~~~~l~~~i~~ll~ 444 (488)
.+|+|........+ +..+.+ ..+++.. +.+++.+.+..++.
T Consensus 77 ~~~~~ii~~t~~~~~~~~~~~~~~g----~~~~l~KP~~~~~~l~~~i~~~l~ 125 (130)
T 3eod_A 77 GDQTPVLVISATENMADIAKALRLG----VEDVLLKPVKDLNRLREMVFACLY 125 (130)
T ss_dssp TCCCCEEEEECCCCHHHHHHHHHHC----CSEEEESCC---CHHHHHHHHHHC
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHcC----CCEEEeCCCCcHHHHHHHHHHHhc
Confidence 57777743322221 233344 5566654 67899999998886
No 173
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=47.48 E-value=1.2e+02 Score=25.98 Aligned_cols=106 Identities=12% Similarity=0.055 Sum_probs=52.2
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH---c
Q psy15555 326 LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA---A 399 (488)
Q Consensus 326 ~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a---~ 399 (488)
.++.++.+.+ ...+.+.+..++.|. .|...... .+....+.. .|+++.-. ..+.-|..+++.+. .
T Consensus 130 ~~ILivdd~~-----~~~~~l~~~L~~~g~--~v~~a~~~--~eal~~l~~~~~dlvl~D~~mp~~~G~~l~~~ir~~~~ 200 (254)
T 2ayx_A 130 MMILVVDDHP-----INRRLLADQLGSLGY--QCKTANDG--VDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGL 200 (254)
T ss_dssp CEEEEEESSH-----HHHHHHHHHHHHHTS--EEEEECCS--HHHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHHHHHC
T ss_pred CEEEEEeCCH-----HHHHHHHHHHHHcCC--EEEEECCH--HHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhcCC
Confidence 4455555443 333444444444443 23333332 444444433 34444322 22333555554442 4
Q ss_pred CCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 GLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.+|||........+ +..+.+ ..+++.+ +.++|.+++.+++.
T Consensus 201 ~~piI~lt~~~~~~~~~~~~~~G----~~~~l~KP~~~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 201 TLPVIGVTANALAEEKQRCLESG----MDSCLSKPVTLDVIKQTLTLYAE 246 (254)
T ss_dssp CSCEEEEESSTTSHHHHHHHHCC----CEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHcC----CceEEECCCCHHHHHHHHHHHHH
Confidence 68888743322211 223333 4567765 89999999988875
No 174
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=47.34 E-value=53 Score=25.83 Aligned_cols=95 Identities=5% Similarity=0.076 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh----Cc-EEEEcCCCCcCCccHHHHH-HcCCcEEEeCCCCC-ccc--
Q psy15555 344 KDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE----GL-IGLHAMWNEHFGIGIVECM-AAGLIMIAHKSGGP-KMD-- 414 (488)
Q Consensus 344 ~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~----ad-~~v~~s~~e~~g~~~lEa~-a~G~PvI~~~~~~~-~~e-- 414 (488)
+.+++.+.++|+ .+.+...=..+|+.+.+.. .| +++.|..+-..+..+.+|+ +.++|+|=-..... .+|
T Consensus 39 ~~l~~~a~~~g~--~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~~~~P~VEVHiSNi~aRE~F 116 (153)
T 3lwz_A 39 SQLEIQAQGMDV--ALSHLQSNAEHALIDSIHQARGNTDFILINPAAFTHTSVALRDALLGVQIPFIEIHLSNVHAREPF 116 (153)
T ss_dssp HHHHHHHHHTTE--EEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCHHHHHHHHHHTCCEEEEESSCGGGSCGG
T ss_pred HHHHHHHHHcCC--EEEEEecCCHHHHHHHHHHhhhcCceEEEccccceechHHHHHHHHhcCCCEEEEEcCCccccchh
Confidence 444555555554 2444443344666666554 56 6788888888899999987 45899997433222 112
Q ss_pred ----eeccCCCccccceecC-CHHHHHHHHHHHHc
Q psy15555 415 ----IVIEDPETCRNGFLAC-DEVEYAQTIKLILH 444 (488)
Q Consensus 415 ----iv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~ 444 (488)
++.+. ..|.++. -.+...-++..+++
T Consensus 117 Rh~S~~s~~----a~GvI~G~G~~gY~lAl~~~~~ 147 (153)
T 3lwz_A 117 RHHSYLSDI----AVGVICGLGADGYNFALQAAVN 147 (153)
T ss_dssp GGCCSSGGG----SSEEEESSTTHHHHHHHHHHHH
T ss_pred hhccccccc----ceEEEEecChhHHHHHHHHHHH
Confidence 22222 4566655 56666666655543
No 175
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=46.63 E-value=91 Score=23.48 Aligned_cols=107 Identities=9% Similarity=0.027 Sum_probs=54.9
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEE-EecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH---c
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVE-FKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA---A 399 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a---~ 399 (488)
+++|+.+.+ ...+.+.......+..-.+. ... +..+....+.. .|+++.-. ..+.-|..+++.+. .
T Consensus 4 ~ILivdd~~-----~~~~~l~~~L~~~~~~~~~~~~~~--~~~~al~~~~~~~~dlvllD~~lp~~~g~~l~~~l~~~~~ 76 (141)
T 3cu5_A 4 RILIVDDEK-----LTRDGLIANINWKALSFDQIDQAD--DGINAIQIALKHPPNVLLTDVRMPRMDGIELVDNILKLYP 76 (141)
T ss_dssp EEEEECSCH-----HHHHHHHHHCCGGGSCCSEEEEES--SHHHHHHHHTTSCCSEEEEESCCSSSCHHHHHHHHHHHCT
T ss_pred eEEEEeCCH-----HHHHHHHHHHHHccCCcEEeeecc--cHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCC
Confidence 566776553 33445555543211112233 222 33566665554 57655543 33334566666553 4
Q ss_pred CCcEEEeCCCCCc---cceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 GLIMIAHKSGGPK---MDIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 G~PvI~~~~~~~~---~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
++|+|........ .+....+ ..+++.. +.+++.+++.+++.
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~~~g----a~~~l~KP~~~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 77 DCSVIFMSGYSDKEYLKAAIKFR----AIRYVEKPIDPSEIMDALKQSIQ 122 (141)
T ss_dssp TCEEEEECCSTTTCCC------C----CCEEECSSCCHHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCcHHHHHHHHhCC----ccEEEeCCCCHHHHHHHHHHHHH
Confidence 6788774332221 1233333 5677765 89999999988775
No 176
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=46.63 E-value=1.4e+02 Score=25.48 Aligned_cols=37 Identities=5% Similarity=0.017 Sum_probs=22.3
Q ss_pred ccccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEe
Q psy15555 50 NVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYT 92 (488)
Q Consensus 50 ~~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~ 92 (488)
.++|||+|+.. |....+..+++++.+...++++..+.
T Consensus 20 ~~~~rI~~l~S------G~g~~~~~~l~~l~~~~~~~~I~~Vv 56 (229)
T 3auf_A 20 GHMIRIGVLIS------GSGTNLQAILDGCREGRIPGRVAVVI 56 (229)
T ss_dssp TTCEEEEEEES------SCCHHHHHHHHHHHTTSSSEEEEEEE
T ss_pred CCCcEEEEEEe------CCcHHHHHHHHHHHhCCCCCeEEEEE
Confidence 34579998732 23346777888887753345654433
No 177
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=46.60 E-value=81 Score=22.85 Aligned_cols=106 Identities=8% Similarity=0.069 Sum_probs=59.5
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcCCC-CcCCccHHHHHH--cC
Q psy15555 326 LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAMWN-EHFGIGIVECMA--AG 400 (488)
Q Consensus 326 ~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s~~-e~~g~~~lEa~a--~G 400 (488)
.++.++.+.+ ...+.++...+..|. .+.... +..+....+.. .|+++.-... +.-|..+++.+. ..
T Consensus 4 ~~ilivdd~~-----~~~~~l~~~l~~~~~--~v~~~~--~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 74 (123)
T 1xhf_A 4 PHILIVEDEL-----VTRNTLKSIFEAEGY--DVFEAT--DGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQAN 74 (123)
T ss_dssp CEEEEECSCH-----HHHHHHHHHHHTTTC--EEEEES--SHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCC
T ss_pred ceEEEEeCCH-----HHHHHHHHHHhhCCc--EEEEeC--CHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCC
Confidence 3566777653 555667777766553 244333 33566666554 4666654332 333555555443 47
Q ss_pred CcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 401 LIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 401 ~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
+|+|......... +..+.+ ..+++.. +.+++...+..++.
T Consensus 75 ~~ii~~s~~~~~~~~~~~~~~g----~~~~l~KP~~~~~l~~~i~~~~~ 119 (123)
T 1xhf_A 75 VALMFLTGRDNEVDKILGLEIG----ADDYITKPFNPRELTIRARNLLS 119 (123)
T ss_dssp CEEEEEESCCSHHHHHHHHHHT----CSEEEESSCCHHHHHHHHHHHHH
T ss_pred CcEEEEECCCChHHHHHHHhcC----cceEEeCCCCHHHHHHHHHHHHH
Confidence 7877643322221 223333 5677765 89999988887764
No 178
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=46.60 E-value=92 Score=26.24 Aligned_cols=34 Identities=12% Similarity=0.081 Sum_probs=20.6
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEe
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYT 92 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~ 92 (488)
|||+|+.. |....+..+++++.+.++..+++.+.
T Consensus 2 ~rI~vl~S------G~g~~~~~~l~~l~~~~~~~~i~~Vv 35 (216)
T 2ywr_A 2 LKIGVLVS------GRGSNLQAIIDAIESGKVNASIELVI 35 (216)
T ss_dssp EEEEEEEC------SCCHHHHHHHHHHHTTSSCEEEEEEE
T ss_pred CEEEEEEe------CCcHHHHHHHHHHHhCCCCCeEEEEE
Confidence 58887632 33346777888888764434554443
No 179
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=46.54 E-value=35 Score=28.53 Aligned_cols=104 Identities=11% Similarity=0.078 Sum_probs=59.3
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcC-CCCcCCccHHHHHH---cCCc
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAM-WNEHFGIGIVECMA---AGLI 402 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s-~~e~~g~~~lEa~a---~G~P 402 (488)
+++|+.+.+ ...+.+....+..| .|..... .++....+...|+++.-. ..+.-|..+++.+. ..+|
T Consensus 4 ~ilivdd~~-----~~~~~l~~~L~~~~---~v~~~~~--~~~al~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ 73 (220)
T 1p2f_A 4 KIAVVDDDK-----NILKKVSEKLQQLG---RVKTFLT--GEDFLNDEEAFHVVVLDVMLPDYSGYEICRMIKETRPETW 73 (220)
T ss_dssp EEEEECSCH-----HHHHHHHHHHTTTE---EEEEESS--HHHHHHCCSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSE
T ss_pred eEEEEeCCH-----HHHHHHHHHHHhCC---CEEEECC--HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCc
Confidence 566776654 44566666666544 3433333 255555445678665543 33334556665554 4788
Q ss_pred EEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 403 MIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 403 vI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
||.-......+ +.++.+ ..+++.. +.+++.+++..++.
T Consensus 74 ii~lt~~~~~~~~~~~~~~g----a~~~l~Kp~~~~~L~~~i~~~~~ 116 (220)
T 1p2f_A 74 VILLTLLSDDESVLKGFEAG----ADDYVTKPFNPEILLARVKRFLE 116 (220)
T ss_dssp EEEEESCCSHHHHHHHHHHT----CSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHcC----CCEEEECCCCHHHHHHHHHHHHc
Confidence 88743322221 223333 5677765 89999999988764
No 180
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=46.28 E-value=40 Score=24.81 Aligned_cols=105 Identities=10% Similarity=0.100 Sum_probs=58.7
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH-----
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA----- 398 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a----- 398 (488)
++.++.+.+ ...+.+....+..|. .+.... +.++....+.. .|+++.-. ..+.-|..+++.+.
T Consensus 4 ~ilivdd~~-----~~~~~l~~~l~~~g~--~v~~~~--~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~ 74 (127)
T 2jba_A 4 RILVVEDEA-----PIREMVCFVLEQNGF--QPVEAE--DYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMT 74 (127)
T ss_dssp EEEEECSCH-----HHHHHHHHHHHHTTC--EEEEEC--SHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTT
T ss_pred EEEEEcCCH-----HHHHHHHHHHHHCCc--eEEEeC--CHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCccc
Confidence 566676653 555667777776654 244333 33555555543 46555433 22334566676664
Q ss_pred cCCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 AGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 ~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.++|+|.-......+ +..+.+ ..+++.. +.+++.+++..++.
T Consensus 75 ~~~~ii~~s~~~~~~~~~~~~~~g----a~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 75 RDIPVVMLTARGEEEDRVRGLETG----ADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp TTSCEEEEEETTHHHHHHTTCCCS----CSEEEEESCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHhcC----CCeEEeCCCCHHHHHHHHHHHHh
Confidence 367887643222211 223333 5567654 89999999988765
No 181
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=46.25 E-value=38 Score=31.01 Aligned_cols=70 Identities=10% Similarity=0.038 Sum_probs=42.1
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcCCCCcCCccHHHHHHcCC
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAMWNEHFGIGIVECMAAGL 401 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s~~e~~g~~~lEa~a~G~ 401 (488)
|+++++-+.+.. + +..++.++++|.+ . .. .++.++++. .|+++..+....-.-...+|+.+|+
T Consensus 47 ~~~~lvav~d~~----~---~~a~~~a~~~g~~-~--~y-----~d~~ell~~~~iDaV~I~tP~~~H~~~~~~al~aGk 111 (350)
T 4had_A 47 ENCVVTAIASRD----L---TRAREMADRFSVP-H--AF-----GSYEEMLASDVIDAVYIPLPTSQHIEWSIKAADAGK 111 (350)
T ss_dssp SSEEEEEEECSS----H---HHHHHHHHHHTCS-E--EE-----SSHHHHHHCSSCSEEEECSCGGGHHHHHHHHHHTTC
T ss_pred CCeEEEEEECCC----H---HHHHHHHHHcCCC-e--ee-----CCHHHHhcCCCCCEEEEeCCCchhHHHHHHHHhcCC
Confidence 788877554431 1 4566677777754 1 11 344455654 5766655533322235789999999
Q ss_pred cEEEeCC
Q psy15555 402 IMIAHKS 408 (488)
Q Consensus 402 PvI~~~~ 408 (488)
+|++-..
T Consensus 112 hVl~EKP 118 (350)
T 4had_A 112 HVVCEKP 118 (350)
T ss_dssp EEEECSC
T ss_pred EEEEeCC
Confidence 9999544
No 182
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=46.06 E-value=1.7e+02 Score=26.60 Aligned_cols=37 Identities=11% Similarity=-0.076 Sum_probs=22.8
Q ss_pred ccccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 50 NVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 50 ~~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
.+++||+++-. .......++.+.+..++++++..+..
T Consensus 11 ~~~~rvgiiG~--------G~~g~~~~~~l~~~~~~~~lvav~d~ 47 (354)
T 3q2i_A 11 DRKIRFALVGC--------GRIANNHFGALEKHADRAELIDVCDI 47 (354)
T ss_dssp SSCEEEEEECC--------STTHHHHHHHHHHTTTTEEEEEEECS
T ss_pred CCcceEEEEcC--------cHHHHHHHHHHHhCCCCeEEEEEEcC
Confidence 35689999742 22233455777775468887765544
No 183
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=45.54 E-value=41 Score=29.87 Aligned_cols=99 Identities=10% Similarity=0.032 Sum_probs=58.5
Q ss_pred CCcEEEecC-CChH--HHHHHHHhCc-EEEEcCCCCcCCc-cHHHHHHcCCcEEEeCCCCCcccee-ccCCCcccccee-
Q psy15555 356 ENNVEFKVN-LPYE--DMKKEFSEGL-IGLHAMWNEHFGI-GIVECMAAGLIMIAHKSGGPKMDIV-IEDPETCRNGFL- 428 (488)
Q Consensus 356 ~~~v~~~g~-~~~~--el~~~~~~ad-~~v~~s~~e~~g~-~~lEa~a~G~PvI~~~~~~~~~eiv-~~~~~~~~~g~~- 428 (488)
.++|++.|. +|.+ +..+....|| ++|.++....+|. .+.++...|+|+|.-|..... ..- .+. ..-+.
T Consensus 174 rP~IV~FGE~lp~~~~~~~~~~~~aDlllviGTSl~V~Paa~l~~~~~~~~~~v~IN~~~~~-~~~~~~~----~~d~~~ 248 (285)
T 3glr_A 174 KPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVG-PLAWHPR----SRDVAQ 248 (285)
T ss_dssp EEEECCTTSBCCGGGGGHHHHHHHCSEEEEESCCCCEETTGGGGGSSCTTSCEEEEESSCCT-HHHHSCC----TTEEEE
T ss_pred CCcEEEeCCcCCHHHHHHHHHHhcCCEEEEeCCCCccccHHHHHHHHhCCCcEEEECCCCcC-ccccCCC----CccEEE
Confidence 456777776 4542 3345678899 4455554443333 344666678898886653221 110 111 12222
Q ss_pred cCCHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q psy15555 429 ACDEVEYAQTIKLILHLSQDTKTRISQNAVSS 460 (488)
Q Consensus 429 ~~~~~~l~~~i~~ll~~~~~~~~~~~~~a~~~ 460 (488)
..+.++....+.+.+. -.++.+++-++..+.
T Consensus 249 ~g~~~~~~~~L~~~lg-w~~el~~~~~~~~~~ 279 (285)
T 3glr_A 249 LGDVVHGVESLVELLG-WTEEMRDLVQRETGK 279 (285)
T ss_dssp ESCHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhC-CHHHHHHHHHhhHhh
Confidence 3488888888888888 778888887766544
No 184
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=45.22 E-value=1.3e+02 Score=24.87 Aligned_cols=106 Identities=10% Similarity=0.056 Sum_probs=60.3
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH---c
Q psy15555 326 LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA---A 399 (488)
Q Consensus 326 ~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a---~ 399 (488)
.++.|+.+.+ ...+.+.+..+..|. .|.... +..+....+.. .|+++.-. ..+.-|..+++.+. .
T Consensus 3 ~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~ 73 (225)
T 1kgs_A 3 VRVLVVEDER-----DLADLITEALKKEMF--TVDVCY--DGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGV 73 (225)
T ss_dssp CEEEEECSSH-----HHHHHHHHHHHHTTC--EEEEES--SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTC
T ss_pred ceEEEEeCCH-----HHHHHHHHHHHHCCC--EEEEEC--CHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 3566776654 555677777776553 344333 33565555554 46555433 33334556666554 3
Q ss_pred CCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 GLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.+|||.-......+ +.++.+ ..+++.. +.+++.+++..++.
T Consensus 74 ~~~ii~ls~~~~~~~~~~~~~~g----a~~~l~Kp~~~~~l~~~i~~~~~ 119 (225)
T 1kgs_A 74 NTPVLMLTALSDVEYRVKGLNMG----ADDYLPKPFDLRELIARVRALIR 119 (225)
T ss_dssp CCCEEEEESSCHHHHHHHTCCCC----CSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHhCC----ccEEEeCCCCHHHHHHHHHHHHh
Confidence 68888743322211 223333 5677765 89999999988764
No 185
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=44.80 E-value=95 Score=27.86 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=18.9
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
|||+|+ |....+....++|.+. +++|+.+.+.
T Consensus 1 mrivf~--------gt~~fa~~~L~~L~~~--~~~i~~Vvt~ 32 (305)
T 2bln_A 1 MKTVVF--------AYHDMGCLGIEALLAA--GYEISAIFTH 32 (305)
T ss_dssp CEEEEE--------ECHHHHHHHHHHHHHT--TCEEEEEECC
T ss_pred CEEEEE--------EcCHHHHHHHHHHHHC--CCcEEEEEcC
Confidence 688886 3334455556777776 4555544444
No 186
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=44.43 E-value=24 Score=26.72 Aligned_cols=107 Identities=11% Similarity=0.137 Sum_probs=61.8
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCC--cCCccHHHHHH-
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNE--HFGIGIVECMA- 398 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e--~~g~~~lEa~a- 398 (488)
..++.|+.+.+ ...+.+++..++.|. .|.... +.++....+.. .|+++.-. ..+ .-|..+++.+.
T Consensus 6 ~~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~ 76 (136)
T 3kto_A 6 HPIIYLVDHQK-----DARAALSKLLSPLDV--TIQCFA--SAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVK 76 (136)
T ss_dssp -CEEEEECSCH-----HHHHHHHHHHTTSSS--EEEEES--SHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHH
T ss_pred CCeEEEEcCCH-----HHHHHHHHHHHHCCc--EEEEeC--CHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHh
Confidence 45777887654 555677777776654 344333 33555555544 35555433 333 34555665554
Q ss_pred --cCCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 --AGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 --~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..+|+|.-......+ +.++.+ ..+++.. +.+++.+++.+++.
T Consensus 77 ~~~~~~ii~~s~~~~~~~~~~~~~~g----a~~~l~KP~~~~~l~~~i~~~~~ 125 (136)
T 3kto_A 77 RGFHLPTIVMASSSDIPTAVRAMRAS----AADFIEKPFIEHVLVHDVQQIIN 125 (136)
T ss_dssp TTCCCCEEEEESSCCHHHHHHHHHTT----CSEEEESSBCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCHHHHHHHHHcC----hHHheeCCCCHHHHHHHHHHHHh
Confidence 367887743322221 233344 5667765 89999999998876
No 187
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=44.34 E-value=85 Score=22.49 Aligned_cols=105 Identities=9% Similarity=0.106 Sum_probs=57.4
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHH--hCcEEEEcCC-CCcCCccHHHHHH--cCC
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS--EGLIGLHAMW-NEHFGIGIVECMA--AGL 401 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~--~ad~~v~~s~-~e~~g~~~lEa~a--~G~ 401 (488)
++.++.+.+ ...+.++......|. .+.... +..+....+. ..|+++.-.. .+.-|..+++.+. ...
T Consensus 3 ~ilivdd~~-----~~~~~l~~~l~~~~~--~v~~~~--~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~ 73 (120)
T 2a9o_A 3 KILIVDDEK-----PISDIIKFNMTKEGY--EVVTAF--NGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSV 73 (120)
T ss_dssp EEEEECSCH-----HHHHHHHHHHHHTTC--EEEEES--SHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCC
T ss_pred eEEEEcCCH-----HHHHHHHHHHHhcCc--EEEEec--CHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCC
Confidence 355666543 445666777766553 344333 3355555544 3566655432 2334555555443 577
Q ss_pred cEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 402 IMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 402 PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
|+|......... +..+.+ ..+++.. +.+++.+++..++.
T Consensus 74 ~ii~~s~~~~~~~~~~~~~~g----~~~~l~Kp~~~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 74 PILMLSAKDSEFDKVIGLELG----ADDYVTKPFSNRELQARVKALLR 117 (120)
T ss_dssp CEEEEESCCSHHHHHHHHHHT----CSEEEESSCCHHHHHHHHHHHHH
T ss_pred CEEEEecCCchHHHHHHHhCC----HhheEeCCCCHHHHHHHHHHHHc
Confidence 877643322221 123333 5567765 88999999888765
No 188
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=44.09 E-value=89 Score=28.68 Aligned_cols=72 Identities=7% Similarity=-0.024 Sum_probs=41.5
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHH--hCcEEEEcCCCCcCCccHHHHHHcCC
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS--EGLIGLHAMWNEHFGIGIVECMAAGL 401 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~--~ad~~v~~s~~e~~g~~~lEa~a~G~ 401 (488)
+++.++-+-+.. . +..++.+++.+++..+... .++.++++ ..|+++..+....-.-.+.+++..|+
T Consensus 29 ~~~~lv~v~d~~----~---~~~~~~a~~~~~~~~~~~~-----~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk 96 (362)
T 1ydw_A 29 PNATISGVASRS----L---EKAKAFATANNYPESTKIH-----GSYESLLEDPEIDALYVPLPTSLHVEWAIKAAEKGK 96 (362)
T ss_dssp TTEEEEEEECSS----H---HHHHHHHHHTTCCTTCEEE-----SSHHHHHHCTTCCEEEECCCGGGHHHHHHHHHTTTC
T ss_pred CCcEEEEEEcCC----H---HHHHHHHHHhCCCCCCeee-----CCHHHHhcCCCCCEEEEcCChHHHHHHHHHHHHCCC
Confidence 577776444321 1 4456667777653222222 24445565 48876665533322334678999999
Q ss_pred cEEEeC
Q psy15555 402 IMIAHK 407 (488)
Q Consensus 402 PvI~~~ 407 (488)
+|++-.
T Consensus 97 ~V~~EK 102 (362)
T 1ydw_A 97 HILLEK 102 (362)
T ss_dssp EEEECS
T ss_pred eEEEec
Confidence 999854
No 189
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=43.92 E-value=36 Score=30.68 Aligned_cols=67 Identities=10% Similarity=0.075 Sum_probs=38.2
Q ss_pred CceEEE-EEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCc
Q psy15555 324 DNLKLI-FIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLI 402 (488)
Q Consensus 324 ~~~~l~-ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~P 402 (488)
+++.++ ++...+ +..++.+++.|.+ ... +.+++ -..+|+++..+....-.-.+.+++..|++
T Consensus 29 ~~~~lvav~d~~~--------~~~~~~~~~~g~~----~~~--~~~~l---~~~~D~V~i~tp~~~h~~~~~~al~~G~~ 91 (319)
T 1tlt_A 29 SDWTLQGAWSPTR--------AKALPICESWRIP----YAD--SLSSL---AASCDAVFVHSSTASHFDVVSTLLNAGVH 91 (319)
T ss_dssp SSEEEEEEECSSC--------TTHHHHHHHHTCC----BCS--SHHHH---HTTCSEEEECSCTTHHHHHHHHHHHTTCE
T ss_pred CCeEEEEEECCCH--------HHHHHHHHHcCCC----ccC--cHHHh---hcCCCEEEEeCCchhHHHHHHHHHHcCCe
Confidence 677776 444444 2234445555543 122 22444 45789766655433223346788999999
Q ss_pred EEEeC
Q psy15555 403 MIAHK 407 (488)
Q Consensus 403 vI~~~ 407 (488)
|++-.
T Consensus 92 v~~eK 96 (319)
T 1tlt_A 92 VCVDK 96 (319)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 99864
No 190
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=43.74 E-value=53 Score=23.87 Aligned_cols=105 Identities=9% Similarity=0.008 Sum_probs=57.8
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcCCC-CcCCccHHHHHH---cC
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAMWN-EHFGIGIVECMA---AG 400 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s~~-e~~g~~~lEa~a---~G 400 (488)
++.++.+.+ ...+.+.+.....|. .+...... .+....+.. .|+++.-... +.-|..+++.+. .+
T Consensus 5 ~ilivdd~~-----~~~~~l~~~l~~~~~--~v~~~~~~--~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~ 75 (124)
T 1dc7_A 5 IVWVVDDDS-----SIRWVLERALAGAGL--TCTTFENG--NEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPM 75 (124)
T ss_dssp CCEEECSSS-----SHHHHHHHHHTTTTC--CCEECCCT--THHHHHSSSCCCSCEEECSCSSHHHHCSTHHHHHHHCTT
T ss_pred EEEEEeCCH-----HHHHHHHHHHHhCCc--EEEEeCCH--HHHHHHHhcCCCCEEEEeeecCCCCHHHHHHHHHhhCCC
Confidence 466777665 444667777766554 24444433 566666654 4655554322 223445555543 36
Q ss_pred CcEEEeCCCCCc---cceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 401 LIMIAHKSGGPK---MDIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 401 ~PvI~~~~~~~~---~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
+|+|........ .+.++.+ ..+++.. +.+++...+..++.
T Consensus 76 ~~ii~~s~~~~~~~~~~~~~~g----~~~~l~kp~~~~~l~~~i~~~~~ 120 (124)
T 1dc7_A 76 LPVIIMTAHSDLDAAVSAYQQG----AFDYLPKPFDIDEAVALVERAIS 120 (124)
T ss_dssp SCCCCBCCSTTSTTTTSSCTTC----CCCCBCSSCCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHhcC----cceEeeCCCCHHHHHHHHHHHHH
Confidence 777764322221 1233333 4566655 89999998887764
No 191
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=43.66 E-value=1.7e+02 Score=27.74 Aligned_cols=78 Identities=17% Similarity=0.072 Sum_probs=43.6
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHH--hCcEEEEcCCCCcCCccHHHHHHcCC
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS--EGLIGLHAMWNEHFGIGIVECMAAGL 401 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~--~ad~~v~~s~~e~~g~~~lEa~a~G~ 401 (488)
+++.++-+-+.. +++.+++.+...+.|++..-.+.+. .+++.++++ ..|+++..+....-.-.+.+|+..|+
T Consensus 43 ~~~~lvav~d~~----~~~~~~~a~~~~~~g~~~~~~~~~~--~~~~~~ll~~~~vD~V~i~tp~~~h~~~~~~al~aGk 116 (444)
T 2ixa_A 43 DDVEIVAFADPD----PYMVGRAQEILKKNGKKPAKVFGNG--NDDYKNMLKDKNIDAVFVSSPWEWHHEHGVAAMKAGK 116 (444)
T ss_dssp TTEEEEEEECSC----HHHHHHHHHHHHHTTCCCCEEECSS--TTTHHHHTTCTTCCEEEECCCGGGHHHHHHHHHHTTC
T ss_pred CCcEEEEEEeCC----HHHHHHHHHHHHhcCCCCCceeccC--CCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCC
Confidence 677776444321 2444555554445565422233321 135666776 47866665533322335678999999
Q ss_pred cEEEeC
Q psy15555 402 IMIAHK 407 (488)
Q Consensus 402 PvI~~~ 407 (488)
+|++-.
T Consensus 117 hV~~EK 122 (444)
T 2ixa_A 117 IVGMEV 122 (444)
T ss_dssp EEEECC
T ss_pred eEEEeC
Confidence 999854
No 192
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=43.65 E-value=67 Score=24.63 Aligned_cols=107 Identities=11% Similarity=0.136 Sum_probs=60.9
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHh-cCCCCcEEEe-cCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH-
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKH-LSLENNVEFK-VNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA- 398 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~-~~l~~~v~~~-g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a- 398 (488)
..+++|+.+.+ ...+.+++..++ .| .... ..-+.++....+.. .|+++.-. ..+.-|..+++.+.
T Consensus 5 ~~~ILivdd~~-----~~~~~l~~~L~~~~~----~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~ 75 (153)
T 3cz5_A 5 TARIMLVDDHP-----IVREGYRRLIERRPG----YAVVAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQ 75 (153)
T ss_dssp CEEEEEECSCH-----HHHHHHHHHHTTSTT----EEEEEEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHH
T ss_pred ccEEEEECCcH-----HHHHHHHHHHhhCCC----cEEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 56777887654 455666666654 33 2222 12234677676665 46665543 23334555565544
Q ss_pred --cCCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 --AGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 --~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.++|||........+ +.+..+ ..+++.. +.+++.+++..++.
T Consensus 76 ~~~~~~ii~ls~~~~~~~~~~~~~~g----~~~~l~kp~~~~~L~~~i~~~~~ 124 (153)
T 3cz5_A 76 WDGAARILIFTMHQGSAFALKAFEAG----ASGYVTKSSDPAELVQAIEAILA 124 (153)
T ss_dssp HCTTCCEEEEESCCSHHHHHHHHHTT----CSEEEETTSCTTHHHHHHHHHTT
T ss_pred hCCCCeEEEEECCCCHHHHHHHHHCC----CcEEEecCCCHHHHHHHHHHHHh
Confidence 367887743322221 223333 5567765 88999999999886
No 193
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=43.33 E-value=1.1e+02 Score=24.68 Aligned_cols=105 Identities=8% Similarity=0.019 Sum_probs=58.9
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCc-CCccHHHHHH---c
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEH-FGIGIVECMA---A 399 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~-~g~~~lEa~a---~ 399 (488)
...++.|+.+.+ ...+.+.......|. .+.....- .+.. -...|+++.-...++ -|. +.+.+. .
T Consensus 11 ~~~~iLivdd~~-----~~~~~l~~~L~~~g~--~v~~~~~~--~~al--~~~~dlvl~D~~mp~~~g~-l~~~~~~~~~ 78 (196)
T 1qo0_D 11 RELQVLVLNPPG-----EVSDALVLQLIRIGC--SVRQCWPP--PEAF--DVPVDVVFTSIFQNRHHDE-IAALLAAGTP 78 (196)
T ss_dssp GGCEEEEESCTT-----HHHHHHHHHHHHHTC--EEEEECSC--CSSC--SSCCSEEEEECCSSTHHHH-HHHHHHHSCT
T ss_pred cCCeEEEEcCCh-----hHHHHHHHHHHHcCC--eEEEecCc--hhhC--CCCCCEEEEeCCCCccchH-HHHHHhccCC
Confidence 356788888765 555677777777664 23333221 1211 124676665443332 244 555554 4
Q ss_pred CCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 GLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.+|||.-...+..+ +.++.+ ..+++.. +.+++..++..++.
T Consensus 79 ~~~ii~lt~~~~~~~~~~a~~~g----a~~~l~KP~~~~~L~~~l~~~~~ 124 (196)
T 1qo0_D 79 RTTLVALVEYESPAVLSQIIELE----CHGVITQPLDAHRVLPVLVSARR 124 (196)
T ss_dssp TCEEEEEECCCSHHHHHHHHHHT----CSEEEESSCCGGGHHHHHHHHHH
T ss_pred CCCEEEEEcCCChHHHHHHHHcC----CCeeEecCcCHHHHHHHHHHHHH
Confidence 68888743322221 223334 5667765 88899999888776
No 194
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=43.28 E-value=1.3e+02 Score=24.41 Aligned_cols=107 Identities=13% Similarity=0.091 Sum_probs=62.1
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH---
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA--- 398 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a--- 398 (488)
..++.|+.+.+ ...+.+....+..|. .|.... +.++....+.. .|+++.-. ..+.-|..+++.+.
T Consensus 4 ~~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~ 74 (208)
T 1yio_A 4 KPTVFVVDDDM-----SVREGLRNLLRSAGF--EVETFD--CASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAIS 74 (208)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHHTTTC--EEEEES--SHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTT
T ss_pred CCEEEEEcCCH-----HHHHHHHHHHHhCCc--eEEEcC--CHHHHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 34677777664 555677777776553 344333 33666666554 45555433 33344566666554
Q ss_pred cCCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 AGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 ~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.++|||.-......+ +.++.+ ..+++.. +.+++.+++..++.
T Consensus 75 ~~~~ii~ls~~~~~~~~~~a~~~G----a~~~l~Kp~~~~~L~~~i~~~~~ 121 (208)
T 1yio_A 75 DGIPIVFITAHGDIPMTVRAMKAG----AIEFLPKPFEEQALLDAIEQGLQ 121 (208)
T ss_dssp CCCCEEEEESCTTSCCCHHHHHTT----EEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHCC----CcEEEeCCCCHHHHHHHHHHHHh
Confidence 368888743322211 233333 5567765 89999999988876
No 195
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=42.95 E-value=28 Score=26.26 Aligned_cols=107 Identities=13% Similarity=0.058 Sum_probs=60.2
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcC-CCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHHc-
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLS-LENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMAA- 399 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~-l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a~- 399 (488)
..+++++.+.+ ...+.+++..++.| . .|...... ++....+.. .|+++.-. ..+.-|..+++.+..
T Consensus 14 ~~~ilivdd~~-----~~~~~l~~~L~~~g~~--~v~~~~~~--~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 84 (135)
T 3snk_A 14 RKQVALFSSDP-----NFKRDVATRLDALAIY--DVRVSETD--DFLKGPPADTRPGIVILDLGGGDLLGKPGIVEARAL 84 (135)
T ss_dssp CEEEEEECSCH-----HHHHHHHHHHHHTSSE--EEEEECGG--GGGGCCCTTCCCSEEEEEEETTGGGGSTTHHHHHGG
T ss_pred CcEEEEEcCCH-----HHHHHHHHHHhhcCCe--EEEEeccH--HHHHHHHhccCCCEEEEeCCCCCchHHHHHHHHHhh
Confidence 45677777654 55567777777665 3 24333322 444444433 46555432 334446666665543
Q ss_pred --CCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 --GLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 --G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.+|+|........+ +..+.+ ..+++.. +.+++..++.+++.
T Consensus 85 ~~~~~ii~~s~~~~~~~~~~~~~~g----~~~~l~KP~~~~~L~~~i~~~~~ 132 (135)
T 3snk_A 85 WATVPLIAVSDELTSEQTRVLVRMN----ASDWLHKPLDGKELLNAVTFHDT 132 (135)
T ss_dssp GTTCCEEEEESCCCHHHHHHHHHTT----CSEEEESSCCHHHHHHHHHHTC-
T ss_pred CCCCcEEEEeCCCCHHHHHHHHHcC----cHhhccCCCCHHHHHHHHHHHhc
Confidence 67888743332221 223333 5667765 89999999988775
No 196
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=42.57 E-value=91 Score=24.23 Aligned_cols=96 Identities=14% Similarity=0.201 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh----Cc-EEEEcCCCCcCCccHHHHHHc-CCcEEEeCCCCC--cc
Q psy15555 342 CVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE----GL-IGLHAMWNEHFGIGIVECMAA-GLIMIAHKSGGP--KM 413 (488)
Q Consensus 342 ~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~----ad-~~v~~s~~e~~g~~~lEa~a~-G~PvI~~~~~~~--~~ 413 (488)
..+.+++.++++|+ .+.+...=..+|+.+.+.. .| +++.|..+-..+..+.+|++. ++|+|=-..... ++
T Consensus 30 i~~~l~~~a~~~g~--~~~~~QSN~EgeLid~Ih~a~~~~dgiiiNpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE 107 (143)
T 1gqo_A 30 IETDLFQFAEALHI--QLTFFQSNHEGDLIDAIHEAEEQYSGIVLNPGALSHYSYAIRDAVSSISLPVVEVHLSNLYARE 107 (143)
T ss_dssp HHHHHHHHHHHHTC--EEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCHHHHHHHHTSCSCEEEEESSCGGGSC
T ss_pred HHHHHHHHHHHcCC--EEEEEeeCCHHHHHHHHHHhhhcCcEEEEccchhccccHHHHHHHHhCCCCEEEEEecCccccc
Confidence 33556666666665 3555554455666666655 45 677888888889999999865 889987333221 11
Q ss_pred -----ceeccCCCccccceecC-CHHHHHHHHHHHH
Q psy15555 414 -----DIVIEDPETCRNGFLAC-DEVEYAQTIKLIL 443 (488)
Q Consensus 414 -----eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll 443 (488)
.++.+. ..|.++. -.+...-++..++
T Consensus 108 ~FRh~S~~s~~----a~GvI~G~G~~gY~lAl~~~~ 139 (143)
T 1gqo_A 108 EFRHQSVIAPV----AKGQIVGLGAEGYKLAVRYLL 139 (143)
T ss_dssp GGGGCCSSGGG----SSEEEESSTTHHHHHHHHHHH
T ss_pred ccccccccccc----eeEEEEecCHHHHHHHHHHHH
Confidence 223332 4566665 5666666666554
No 197
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=42.00 E-value=1e+02 Score=24.06 Aligned_cols=96 Identities=10% Similarity=0.064 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHH----hCc-EEEEcCCCCcCCccHHHHHHc-CCcEEEeCCCCC-ccc
Q psy15555 342 CVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS----EGL-IGLHAMWNEHFGIGIVECMAA-GLIMIAHKSGGP-KMD 414 (488)
Q Consensus 342 ~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~----~ad-~~v~~s~~e~~g~~~lEa~a~-G~PvI~~~~~~~-~~e 414 (488)
..+.+++.++++|+ .+.+...=..+|+.+.+. ..| +++.|..+-..+..+.+|++. ++|+|=-..... .+|
T Consensus 32 i~~~l~~~a~~~g~--~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE 109 (146)
T 1h05_A 32 LVALIEREAAELGL--KAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSVALRDACAELSAPLIEVHISNVHARE 109 (146)
T ss_dssp HHHHHHHHHHHTTC--EEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCHHHHHHHHTCCSCEEEEESSCGGGSC
T ss_pred HHHHHHHHHHHcCC--EEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccHHHHHHHHhCCCCEEEEEecCccccc
Confidence 33555666666664 355554434455555544 456 788888888889999999865 899987333222 112
Q ss_pred ------eeccCCCccccceecC-CHHHHHHHHHHHH
Q psy15555 415 ------IVIEDPETCRNGFLAC-DEVEYAQTIKLIL 443 (488)
Q Consensus 415 ------iv~~~~~~~~~g~~~~-~~~~l~~~i~~ll 443 (488)
++.+. ..|.++. -.+...-++..++
T Consensus 110 ~FRh~S~~s~~----a~GvI~G~G~~gY~lAl~~~~ 141 (146)
T 1h05_A 110 EFRRHSYLSPI----ATGVIVGLGIQGYLLALRYLA 141 (146)
T ss_dssp GGGGCCSSGGG----SSEEEESSTTHHHHHHHHHHH
T ss_pred ccccccccccc----eeEEEEecCHHHHHHHHHHHH
Confidence 33333 4566665 5666666655544
No 198
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=41.32 E-value=43 Score=27.03 Aligned_cols=107 Identities=7% Similarity=0.043 Sum_probs=64.9
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH---
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA--- 398 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a--- 398 (488)
..++.|+.+.+ ...+.+....+..|. .|.... +.++..+.+.. .|+++.-. ..+.-|..+++.+.
T Consensus 7 ~~~iLivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~ 77 (184)
T 3rqi_A 7 DKNFLVIDDNE-----VFAGTLARGLERRGY--AVRQAH--NKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQ 77 (184)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEEC--SHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHC
T ss_pred CCeEEEEcCCH-----HHHHHHHHHHHHCCC--EEEEeC--CHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcC
Confidence 45777887664 555777777777664 344333 33666666655 46655533 33445677766654
Q ss_pred cCCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 AGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 ~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..+|||.-......+ +.++.+ ..+++.. +.+++.+++..++.
T Consensus 78 ~~~~ii~lt~~~~~~~~~~a~~~G----a~~~l~KP~~~~~L~~~i~~~~~ 124 (184)
T 3rqi_A 78 PDARILVLTGYASIATAVQAVKDG----ADNYLAKPANVESILAALQTNAS 124 (184)
T ss_dssp TTCEEEEEESSCCHHHHHHHHHHT----CSEEEESSCCHHHHHHHTSTTHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHhC----HHHheeCCCCHHHHHHHHHHHHH
Confidence 368888743322221 233444 5677765 89999999887765
No 199
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=41.27 E-value=71 Score=28.92 Aligned_cols=105 Identities=10% Similarity=0.104 Sum_probs=57.5
Q ss_pred HHHHHHHHhCcEEEEc-CCCCcCCccHHHHHHcCCcEEEeCCCCCccceec--cC---CCccccceecC-CHHHHHHHHH
Q psy15555 368 EDMKKEFSEGLIGLHA-MWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVI--ED---PETCRNGFLAC-DEVEYAQTIK 440 (488)
Q Consensus 368 ~el~~~~~~ad~~v~~-s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~--~~---~~~~~~g~~~~-~~~~l~~~i~ 440 (488)
..-..-++.||++|.. ...|+|--.++++.. +.++|.... +. +... ++ +.....-|+-+ +...+++.|.
T Consensus 86 p~d~~~l~~ADlvv~nG~~lE~wl~k~~~~~~-~~~~v~~s~-gi--~~~~~~~~~~~~~~DPHvWldp~n~~~~a~~I~ 161 (321)
T 1xvl_A 86 PSDIVKAQDADLILYNGMNLERWFEQFLGNVK-DVPSVVLTE-GI--EPIPIADGPYTDKPNPHAWMSPRNALVYVENIR 161 (321)
T ss_dssp HHHHHHHHTCSEEEECCTTSSTTHHHHHHTSS-SCCEEETTT-TC--CCCBCCSSSSTTSBCCCGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEECCCChHHHHHHHHHhcC-CCcEEEccC-Cc--ccccccccCCCCCCCCCcCCCHHHHHHHHHHHH
Confidence 4445678899976653 456776667777665 666665432 22 1111 00 00001224433 5556666665
Q ss_pred HHH-ccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy15555 441 LIL-HLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 441 ~ll-~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~ 478 (488)
+.| ..||+......+|+.++.++ .+..-+++.+.+.
T Consensus 162 ~~L~~~DP~~a~~Y~~Na~~~~~~--L~~Ld~~~~~~l~ 198 (321)
T 1xvl_A 162 QAFVELDPDNAKYYNANAAVYSEQ--LKAIDRQLGADLE 198 (321)
T ss_dssp HHHHHHCGGGHHHHHHHHHHHHHH--HHHHHHHHHHHHT
T ss_pred HHHHHHCcccHHHHHHHHHHHHHH--HHHHHHHHHHHHh
Confidence 544 34888888888888776654 3444444444443
No 200
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=40.39 E-value=1.3e+02 Score=23.51 Aligned_cols=98 Identities=12% Similarity=0.135 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhC-----c-EEEEcCCCCcCCccHHHHHHc-CCcEEEeCCCCC--
Q psy15555 341 VCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEG-----L-IGLHAMWNEHFGIGIVECMAA-GLIMIAHKSGGP-- 411 (488)
Q Consensus 341 ~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~a-----d-~~v~~s~~e~~g~~~lEa~a~-G~PvI~~~~~~~-- 411 (488)
+..+.+++.++++|+. +.+...=..+|+.+.+..| | +++.|-.+...+..+.+|++. ++|+|=-.....
T Consensus 28 di~~~l~~~a~~~g~~--v~~~QSN~EgeLId~Ih~a~~~~~dgiIINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~a 105 (149)
T 2uyg_A 28 ELEALCEAWGAELGLG--VVFRQTNYEGQLIEWVQQAHQEGFLAIVLNPGALTHYSYALLDAIRAQPLPVVEVHLTNLHA 105 (149)
T ss_dssp HHHHHHHHHHHHTTCC--EEEEECSCHHHHHHHHHHTTTTTCSEEEEECGGGGGTCHHHHHHHHTSCSCEEEEESSCGGG
T ss_pred HHHHHHHHHHHHcCCE--EEEEeeCCHHHHHHHHHHhccCCeeEEEEccchhccccHHHHHHHHhCCCCEEEEEecCccc
Confidence 3445666667777753 6665554556777777654 5 677888888889999999865 899987333222
Q ss_pred cc-----ceeccCCCccccceecC-CHHHHHHHHHHHHc
Q psy15555 412 KM-----DIVIEDPETCRNGFLAC-DEVEYAQTIKLILH 444 (488)
Q Consensus 412 ~~-----eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~ 444 (488)
++ .++.+. ..|.++. -.+...-++..++.
T Consensus 106 RE~FRh~S~~s~~----a~GvI~G~G~~gY~lAl~~~~~ 140 (149)
T 2uyg_A 106 REEFRRHSVTAPA----CRGIVSGFGPLSYKLALVYLAE 140 (149)
T ss_dssp SCGGGGCCSSGGG----SSEEEESSTTHHHHHHHHHHHH
T ss_pred ccccccccccccc----eeEEEEecCHHHHHHHHHHHHH
Confidence 11 233333 4566665 56666666666554
No 201
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=39.87 E-value=1.2e+02 Score=24.27 Aligned_cols=79 Identities=13% Similarity=0.007 Sum_probs=49.4
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC-CChHHHHHHHHh-----CcEEEEcCCCCcCCccHHHHHHc
Q psy15555 326 LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN-LPYEDMKKEFSE-----GLIGLHAMWNEHFGIGIVECMAA 399 (488)
Q Consensus 326 ~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-~~~~el~~~~~~-----ad~~v~~s~~e~~g~~~lEa~a~ 399 (488)
.-.+|.|+..+ .+..++..+.++++|++-.+...+- ...+++.++.+. ++++|.....++ .+.-+=|...
T Consensus 13 ~V~IimGS~SD---~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa-~LpgvvA~~t 88 (170)
T 1xmp_A 13 LVGVIMGSTSD---WETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAA-HLPGMVAAKT 88 (170)
T ss_dssp SEEEEESSGGG---HHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSC-CHHHHHHTTC
T ss_pred cEEEEECcHHH---HHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchh-hhHHHHHhcc
Confidence 34566666543 3667777778888888766666543 255677777654 567776543322 3444556667
Q ss_pred CCcEEEeCC
Q psy15555 400 GLIMIAHKS 408 (488)
Q Consensus 400 G~PvI~~~~ 408 (488)
-+|||.-+.
T Consensus 89 ~~PVIgVP~ 97 (170)
T 1xmp_A 89 NLPVIGVPV 97 (170)
T ss_dssp CSCEEEEEE
T ss_pred CCCEEEeeC
Confidence 888888655
No 202
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=39.59 E-value=1.9e+02 Score=26.38 Aligned_cols=36 Identities=3% Similarity=-0.140 Sum_probs=22.2
Q ss_pred cccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 51 VLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 51 ~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
.++||+++. ........++.|.+..++++++.++..
T Consensus 22 ~~~rvgiIG--------~G~~g~~~~~~l~~~~~~~~lvav~d~ 57 (357)
T 3ec7_A 22 MTLKAGIVG--------IGMIGSDHLRRLANTVSGVEVVAVCDI 57 (357)
T ss_dssp CCEEEEEEC--------CSHHHHHHHHHHHHTCTTEEEEEEECS
T ss_pred CeeeEEEEC--------CcHHHHHHHHHHHhhCCCcEEEEEEeC
Confidence 357899873 223334566777744568888765554
No 203
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=39.49 E-value=6.1 Score=21.10 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEec
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKV 363 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g 363 (488)
+++-+.+|+.| |....+++.+++.++. |.|-|
T Consensus 4 qvrtiwvggtp-----eelkklkeeakkanir--vtfwg 35 (36)
T 2ki0_A 4 QVRTIWVGGTP-----EELKKLKEEAKKANIR--VTFWG 35 (36)
T ss_dssp SCCCCCBCCCH-----HHHHHHHHHHHHHCCC--CCBCC
T ss_pred eeEEEEecCCH-----HHHHHHHHHHHhccEE--EEeec
Confidence 55667788877 5567777777777653 55443
No 204
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=39.48 E-value=41 Score=30.88 Aligned_cols=93 Identities=12% Similarity=0.011 Sum_probs=50.6
Q ss_pred CCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEE-ecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCC
Q psy15555 288 GPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFI-GSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLP 366 (488)
Q Consensus 288 ~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~iv-G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 366 (488)
++..+..+|.-. -+....+.++.. . +++.++-+ .+.+ +..++.+++.|.+ ..
T Consensus 26 ~~~rigiIG~G~--~g~~~~~~~l~~----~-----~~~~l~av~d~~~--------~~~~~~a~~~g~~----~~---- 78 (350)
T 3rc1_A 26 NPIRVGVIGCAD--IAWRRALPALEA----E-----PLTEVTAIASRRW--------DRAKRFTERFGGE----PV---- 78 (350)
T ss_dssp CCEEEEEESCCH--HHHHTHHHHHHH----C-----TTEEEEEEEESSH--------HHHHHHHHHHCSE----EE----
T ss_pred CceEEEEEcCcH--HHHHHHHHHHHh----C-----CCeEEEEEEcCCH--------HHHHHHHHHcCCC----Cc----
Confidence 356777777511 011123444433 2 67777644 3332 4455666666642 11
Q ss_pred hHHHHHHHH--hCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCC
Q psy15555 367 YEDMKKEFS--EGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 367 ~~el~~~~~--~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~ 408 (488)
.++.++++ ..|+++..+....-.-.+.+++..|++|++-..
T Consensus 79 -~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP 121 (350)
T 3rc1_A 79 -EGYPALLERDDVDAVYVPLPAVLHAEWIDRALRAGKHVLAEKP 121 (350)
T ss_dssp -ESHHHHHTCTTCSEEEECCCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred -CCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHCCCcEEEeCC
Confidence 34445555 478666655333222346789999999998554
No 205
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=39.09 E-value=90 Score=23.48 Aligned_cols=107 Identities=12% Similarity=0.058 Sum_probs=61.9
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhC--cEEEEcC-CCCcCCccHHHHH-HcC
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEG--LIGLHAM-WNEHFGIGIVECM-AAG 400 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~a--d~~v~~s-~~e~~g~~~lEa~-a~G 400 (488)
..++.||-+.+. -.+.+++..++.|.. |... .-+.+|-.++++.. |+.+.-- ..+.-|..+++.+ ..+
T Consensus 8 ~~rILiVdD~~~-----~~~~l~~~L~~~G~~--v~~~-a~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ 79 (123)
T 2lpm_A 8 RLRVLVVEDESM-----IAMLIEDTLCELGHE--VAAT-ASRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERN 79 (123)
T ss_dssp CCCEEEESSSTT-----TSHHHHHHHHHHCCC--CCBC-SCCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTC
T ss_pred CCEEEEEeCCHH-----HHHHHHHHHHHCCCE--EEEE-ECCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCC
Confidence 567788877653 236777777777753 2111 12345666666654 5555433 3344566666655 358
Q ss_pred CcEEEeCCCCCccceeccCCCccccceecC--CHHHHHHHHHHHH
Q psy15555 401 LIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLIL 443 (488)
Q Consensus 401 ~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll 443 (488)
+|||.-...+......+.+ ..+++.+ +.++|.+++.+++
T Consensus 80 ipvI~lTa~~~~~~~~~~g----~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 80 VPFIFATGYGSKGLDTRYS----NIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp CSSCCBCTTCTTSCCSSSC----SCSCBCSSSSHHHHHHHHSTTC
T ss_pred CCEEEEecCccHHHHHhCC----CCcEEECCCCHHHHHHHHHHHH
Confidence 8988743222221222222 5677766 9999998887764
No 206
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=38.29 E-value=2.1e+02 Score=25.16 Aligned_cols=107 Identities=12% Similarity=0.082 Sum_probs=62.4
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEE-EecCCChHHHHHHHHh--CcEEEEcCCCC--cCCccHHHHHHc
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVE-FKVNLPYEDMKKEFSE--GLIGLHAMWNE--HFGIGIVECMAA 399 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~~~el~~~~~~--ad~~v~~s~~e--~~g~~~lEa~a~ 399 (488)
..++.++-+.+ .-...++...+..|. .|. ... +..|....+.. .|+++.--..+ .-|..+++.+-.
T Consensus 160 ~~rILvVdD~~-----~~~~~l~~~L~~~g~--~v~~~a~--~g~eAl~~~~~~~~dlvl~D~~MPd~mdG~e~~~~ir~ 230 (286)
T 3n0r_A 160 ATEVLIIEDEP-----VIAADIEALVRELGH--DVTDIAA--TRGEALEAVTRRTPGLVLADIQLADGSSGIDAVKDILG 230 (286)
T ss_dssp CCEEEEECCSH-----HHHHHHHHHHHHTTC--EEEEEES--SHHHHHHHHHHCCCSEEEEESCCTTSCCTTTTTHHHHH
T ss_pred CCcEEEEcCCH-----HHHHHHHHHhhccCc--eEEEEeC--CHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHh
Confidence 45677777654 555777777777764 243 333 33666666665 46666543333 235444332221
Q ss_pred --CCcEEEeCCC-CCccceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 --GLIMIAHKSG-GPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 --G~PvI~~~~~-~~~~eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.+|||.-... ....+....| ..+++.+ ++++|...|.+++.
T Consensus 231 ~~~~piI~lT~~~~~~~~~~~~G----~~~~l~KP~~~~~L~~~i~~~l~ 276 (286)
T 3n0r_A 231 RMDVPVIFITAFPERLLTGERPE----PTFLITKPFQPETVKAAIGQALF 276 (286)
T ss_dssp HTTCCEEEEESCGGGGCCSSSCC----CSSEEESSCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCHHHHHHHHhCC----CcEEEeCCCCHHHHHHHHHHHHH
Confidence 8999984332 1111222333 5677776 99999999999886
No 207
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=38.28 E-value=11 Score=33.24 Aligned_cols=74 Identities=8% Similarity=-0.022 Sum_probs=45.6
Q ss_pred ChHHHHHHHHhCcE-EEEcCCCCcCCc-cHHHHHHcCCcE-EEeCCCCCccceeccCCCccccceecCCHHHHHHHHH
Q psy15555 366 PYEDMKKEFSEGLI-GLHAMWNEHFGI-GIVECMAAGLIM-IAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIK 440 (488)
Q Consensus 366 ~~~el~~~~~~ad~-~v~~s~~e~~g~-~~lEa~a~G~Pv-I~~~~~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~ 440 (488)
|..+-..++..||+ ++.+|..-+..+ .++|..-.+..| +.++......++++.+ .+.-.|..+.|++.+.+.+.
T Consensus 176 p~~~~~~~lp~~D~viiTgstlvN~Tl~~lL~~~~~a~~vvl~GPStp~~P~lf~~G-v~~laG~~V~d~~~~~~~i~ 252 (270)
T 3l5o_A 176 PLPASEFILPECDYVYITCASVVDKTLPRLLELSRNARRITLVGPGTPLAPVLFEHG-LQELSGFMVKDNARAFRIVA 252 (270)
T ss_dssp EGGGHHHHGGGCSEEEEETHHHHHTCHHHHHHHTTTSSEEEEESTTCCCCGGGGGTT-CSEEEEEEESCHHHHHHHHT
T ss_pred ChhHHHHhhccCCEEEEEeehhhcCCHHHHHhhCCCCCEEEEECCCchhhHHHHhcC-cCEEEEEEEcCHHHHHHHHh
Confidence 45667779999994 454443222222 356666556555 5666655544777655 55567777889887776664
No 208
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=38.25 E-value=1.1e+02 Score=21.95 Aligned_cols=105 Identities=10% Similarity=0.146 Sum_probs=56.1
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH---cC
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA---AG 400 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a---~G 400 (488)
++.++.+.+ ...+.+++..+..|.. .+.... +..+....+.. .|+++.-. ..+.-|..+++.+. .+
T Consensus 4 ~ilivdd~~-----~~~~~l~~~l~~~g~~-vv~~~~--~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~ 75 (120)
T 1tmy_A 4 RVLIVDDAA-----FMRMMLKDIITKAGYE-VAGEAT--NGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPN 75 (120)
T ss_dssp EEEEECSCH-----HHHHHHHHHHHHTTCE-EEEEES--SHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTT
T ss_pred eEEEEcCcH-----HHHHHHHHHHhhcCcE-EEEEEC--CHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCC
Confidence 566666543 4556677777665531 122222 23555555443 56555433 33334556666553 46
Q ss_pred CcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHH
Q psy15555 401 LIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLIL 443 (488)
Q Consensus 401 ~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll 443 (488)
.|+|........+ +..+.+ ..+++.. +.+++.+++.+++
T Consensus 76 ~~ii~~s~~~~~~~~~~~~~~g----~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 76 AKIIVCSAMGQQAMVIEAIKAG----AKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp CCEEEEECTTCHHHHHHHHHTT----CCEEEESSCCHHHHHHHHHHHC
T ss_pred CeEEEEeCCCCHHHHHHHHHhC----cceeEeCCCCHHHHHHHHHHHh
Confidence 7877643322221 223333 5567765 8899998887764
No 209
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=38.12 E-value=34 Score=30.73 Aligned_cols=68 Identities=7% Similarity=0.041 Sum_probs=40.0
Q ss_pred CceEEEEE-ecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCc
Q psy15555 324 DNLKLIFI-GSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLI 402 (488)
Q Consensus 324 ~~~~l~iv-G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~P 402 (488)
+++.++-+ .+.+ +..++.+++.|.+. + +++.+++...|+++..+....-.-.+.+++..|++
T Consensus 30 ~~~~l~av~d~~~--------~~~~~~a~~~~~~~------~---~~~~~ll~~~D~V~i~tp~~~h~~~~~~al~~gk~ 92 (308)
T 3uuw_A 30 ERFEFVGAFTPNK--------VKREKICSDYRIMP------F---DSIESLAKKCDCIFLHSSTETHYEIIKILLNLGVH 92 (308)
T ss_dssp SSSEEEEEECSCH--------HHHHHHHHHHTCCB------C---SCHHHHHTTCSEEEECCCGGGHHHHHHHHHHTTCE
T ss_pred CCeEEEEEECCCH--------HHHHHHHHHcCCCC------c---CCHHHHHhcCCEEEEeCCcHhHHHHHHHHHHCCCc
Confidence 67777743 3332 44556666666431 2 23334444899766655333223346789999999
Q ss_pred EEEeCC
Q psy15555 403 MIAHKS 408 (488)
Q Consensus 403 vI~~~~ 408 (488)
|++-..
T Consensus 93 vl~EKP 98 (308)
T 3uuw_A 93 VYVDKP 98 (308)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 998643
No 210
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=38.11 E-value=95 Score=26.55 Aligned_cols=106 Identities=11% Similarity=0.052 Sum_probs=55.7
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHHc--C
Q psy15555 326 LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMAA--G 400 (488)
Q Consensus 326 ~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a~--G 400 (488)
.+++|+.+.+ ...+.+....+..+. .|..... ..+....+.. .|+++.-. ..+.-|..+++.+.. .
T Consensus 38 ~~ILivdd~~-----~~~~~l~~~L~~~g~--~v~~~~~--~~~al~~~~~~~~DlvllD~~lp~~~G~~l~~~lr~~~~ 108 (249)
T 3q9s_A 38 QRILVIEDDH-----DIANVLRMDLTDAGY--VVDHADS--AMNGLIKAREDHPDLILLDLGLPDFDGGDVVQRLRKNSA 108 (249)
T ss_dssp CEEEEECSCH-----HHHHHHHHHHHTTTC--EEEEESS--HHHHHHHHHHSCCSEEEEECCSCHHHHHHHHHHHHTTCC
T ss_pred CEEEEEECCH-----HHHHHHHHHHHHCCC--EEEEeCC--HHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHcCCC
Confidence 4566666543 444555665555442 2333332 2454444443 45544432 223334555555442 5
Q ss_pred CcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 401 LIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 401 ~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
+|||.-......+ +.++.+ ..+++.. +.++|.++|..++.
T Consensus 109 ~~iI~lt~~~~~~~~~~a~~~G----a~~yl~Kp~~~~~L~~~i~~~l~ 153 (249)
T 3q9s_A 109 LPIIVLTARDTVEEKVRLLGLG----ADDYLIKPFHPDELLARVKVQLR 153 (249)
T ss_dssp CCEEEEESCCSHHHHHHHHHHT----CSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCHHHHHHHHHCC----CcEEEECCCCHHHHHHHHHHHHh
Confidence 6777643332221 223333 5677765 89999999998875
No 211
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=38.06 E-value=64 Score=27.02 Aligned_cols=80 Identities=21% Similarity=0.205 Sum_probs=51.3
Q ss_pred ceEEEEEecCCC-CCcHHHHHHHHHHHHhcCCCCcEEEec--CCChHHHHHHHHhCcEEEEcCCCCcC---------C--
Q psy15555 325 NLKLIFIGSTRN-EEDEVCVKDMQDLCKHLSLENNVEFKV--NLPYEDMKKEFSEGLIGLHAMWNEHF---------G-- 390 (488)
Q Consensus 325 ~~~l~ivG~~~~-~~~~~~~~~l~~~~~~~~l~~~v~~~g--~~~~~el~~~~~~ad~~v~~s~~e~~---------g-- 390 (488)
..++.+++.... .+..++.+.+++..+++|.. +..+. ..+.++..+.+..||.++.|- .+.+ |
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~--v~~~~i~~~~~~~~~~~l~~ad~I~l~G-G~~~~l~~~L~~~gl~ 103 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLL--VEELDIATESLGEITTKLRKNDFIYVTG-GNTFFLLQELKRTGAD 103 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCE--EEECCTTTSCHHHHHHHHHHSSEEEECC-SCHHHHHHHHHHHTHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCe--EEEEEecCCChHHHHHHHHhCCEEEECC-CCHHHHHHHHHHCChH
Confidence 357777774321 12236778889999999863 55552 124477888999999766654 2211 2
Q ss_pred ccHHHHHHcCCcEEEeC
Q psy15555 391 IGIVECMAAGLIMIAHK 407 (488)
Q Consensus 391 ~~~lEa~a~G~PvI~~~ 407 (488)
-.+-|+...|+|++.+-
T Consensus 104 ~~l~~~~~~G~p~~G~s 120 (206)
T 3l4e_A 104 KLILEEIAAGKLYIGES 120 (206)
T ss_dssp HHHHHHHHTTCEEEEET
T ss_pred HHHHHHHHcCCeEEEEC
Confidence 13567788899999854
No 212
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=38.06 E-value=1.8e+02 Score=24.44 Aligned_cols=38 Identities=11% Similarity=0.074 Sum_probs=22.0
Q ss_pred ccccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 50 NVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 50 ~~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
.+++||+++.+ |...-+..++.+..+. .+++|..+.++
T Consensus 3 ~~~~riavl~S------G~Gsnl~all~~~~~~-~~~eI~~Vis~ 40 (215)
T 3tqr_A 3 REPLPIVVLIS------GNGTNLQAIIGAIQKG-LAIEIRAVISN 40 (215)
T ss_dssp -CCEEEEEEES------SCCHHHHHHHHHHHTT-CSEEEEEEEES
T ss_pred CCCcEEEEEEe------CCcHHHHHHHHHHHcC-CCCEEEEEEeC
Confidence 34689987632 3445566677776653 35666655443
No 213
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=38.04 E-value=1.3e+02 Score=28.09 Aligned_cols=58 Identities=16% Similarity=0.059 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh-------CcEEEEcCCCCcCCccHHHHHHcCCcEEEeC
Q psy15555 344 KDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE-------GLIGLHAMWNEHFGIGIVECMAAGLIMIAHK 407 (488)
Q Consensus 344 ~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~-------ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~ 407 (488)
+..++.++++|++.. .. + .++.++++. .|+++..+....-.-.+.+|+..|++|++-.
T Consensus 52 ~~a~~~a~~~g~~~~-~~--~---~~~~~ll~~~~~~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EK 116 (398)
T 3dty_A 52 IRGSAFGEQLGVDSE-RC--Y---ADYLSMFEQEARRADGIQAVSIATPNGTHYSITKAALEAGLHVVCEK 116 (398)
T ss_dssp HHHHHHHHHTTCCGG-GB--C---SSHHHHHHHHTTCTTCCSEEEEESCGGGHHHHHHHHHHTTCEEEECS
T ss_pred HHHHHHHHHhCCCcc-ee--e---CCHHHHHhcccccCCCCCEEEECCCcHHHHHHHHHHHHCCCeEEEeC
Confidence 456667777776421 11 1 345555554 8965554432222235789999999999944
No 214
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=37.82 E-value=1.3e+02 Score=26.29 Aligned_cols=39 Identities=10% Similarity=-0.027 Sum_probs=24.1
Q ss_pred ccccEEEEeccCCCCCCCce-ehHHHHHHHHHHhCCCeeEEEEeCCCC
Q psy15555 50 NVLKTVAFFHPYCNAGGGGE-RVLWTAVLALHQKYPDYKIYIYTGDVD 96 (488)
Q Consensus 50 ~~~~rI~~~~~~~~~~gG~e-~~~~~l~~~L~~~~~~~~v~~~~~~~~ 96 (488)
+++|||++..++ |.. .-+..|+++|++ + ++|+++....+
T Consensus 9 ~~~m~ILlTNDD-----Gi~apGi~aL~~~l~~-~--~~V~VVAP~~~ 48 (261)
T 3ty2_A 9 TPKLRLLLSNDD-----GVYAKGLAILAKTLAD-L--GEVDVVAPDRN 48 (261)
T ss_dssp --CCEEEEECSS-----CTTCHHHHHHHHHHTT-T--SEEEEEEESSC
T ss_pred CCCCeEEEEcCC-----CCCCHHHHHHHHHHHh-c--CCEEEEecCCC
Confidence 445999987766 333 446677888877 3 45666665433
No 215
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=37.75 E-value=1.9e+02 Score=26.17 Aligned_cols=27 Identities=11% Similarity=0.000 Sum_probs=17.9
Q ss_pred cccEEEEeccCCCCCCCceehHHHHHHHHHHhCCC
Q psy15555 51 VLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPD 85 (488)
Q Consensus 51 ~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~ 85 (488)
.+|||+|+ |+......+.++|.+.+++
T Consensus 21 ~~mrIvf~--------G~~~fa~~~L~~L~~~~~~ 47 (329)
T 2bw0_A 21 QSMKIAVI--------GQSLFGQEVYCHLRKEGHE 47 (329)
T ss_dssp CCCEEEEE--------CCHHHHHHHHHHHHHTTCE
T ss_pred CCCEEEEE--------cCcHHHHHHHHHHHHCCCe
Confidence 45999997 3444555667888887433
No 216
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=37.67 E-value=41 Score=31.46 Aligned_cols=36 Identities=11% Similarity=-0.019 Sum_probs=24.2
Q ss_pred HHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEE
Q psy15555 369 DMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIA 405 (488)
Q Consensus 369 el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~ 405 (488)
.+.+.+..+|+||+.|...-+.--+++.|+ --|||.
T Consensus 251 ~L~eav~~ADV~IG~Sapgl~T~EmVk~Ma-~~pIIf 286 (398)
T 2a9f_A 251 TLEDALEGADIFIGVSAPGVLKAEWISKMA-ARPVIF 286 (398)
T ss_dssp SCSHHHHTTCSEEECCSTTCCCHHHHHTSC-SSCEEE
T ss_pred hHHHHhccCCEEEecCCCCCCCHHHHHhhC-CCCEEE
Confidence 477788889999999864444445666666 345554
No 217
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=37.41 E-value=33 Score=26.72 Aligned_cols=42 Identities=12% Similarity=0.053 Sum_probs=27.2
Q ss_pred ccccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCe-eEEEE
Q psy15555 50 NVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDY-KIYIY 91 (488)
Q Consensus 50 ~~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~-~v~~~ 91 (488)
...||++|+....+.+.-..+.++.++.++.+.++++ .|+++
T Consensus 10 ~~~~~~~ivv~~~Pyg~~~a~~Al~~A~aala~g~eV~~VFf~ 52 (140)
T 2d1p_A 10 HGSMRFAIVVTGPAYGTQQASSAFQFAQALIADGHELSSVFFY 52 (140)
T ss_dssp -CCCEEEEEECSCSSSSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CCceEEEEEEcCCCCCcHHHHHHHHHHHHHHHCCCccCEEEEe
Confidence 3469999876544332223377889999999887666 44444
No 218
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=37.27 E-value=1.3e+02 Score=27.88 Aligned_cols=63 Identities=5% Similarity=-0.125 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCC--CCcCCc---cHHHHHH-------cCCcEEEe
Q psy15555 344 KDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMW--NEHFGI---GIVECMA-------AGLIMIAH 406 (488)
Q Consensus 344 ~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~--~e~~g~---~~lEa~a-------~G~PvI~~ 406 (488)
+.+.+.+.+.|..-.+.-+...+..++..-+..+|.++.++. ..+.+- +.++.+. .|+|+...
T Consensus 275 ~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~iiigsP~y~~~~~~~~k~~ld~l~~~~~~~l~~k~~~~~ 349 (404)
T 2ohh_A 275 HAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNRTLTRKALVF 349 (404)
T ss_dssp HHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCEETTEECTHHHHHHHHHHHHCGGGTCCEEEEEE
T ss_pred HHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECccccccchHHHHHHHHHhhhccccccCCCEEEEE
Confidence 444444444343212222334445667777889996665553 222222 2344332 58887753
No 219
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=37.13 E-value=61 Score=29.74 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=22.5
Q ss_pred CceehHHHHHHHHHHhCCCeeEEEEeCCCC
Q psy15555 67 GGERVLWTAVLALHQKYPDYKIYIYTGDVD 96 (488)
Q Consensus 67 G~e~~~~~l~~~L~~~~~~~~v~~~~~~~~ 96 (488)
|=...+.+++..|+++ +.+|+++..++.
T Consensus 38 GKTTvA~~LA~~lA~~--G~rVLlvD~D~~ 65 (349)
T 3ug7_A 38 GKTTMSAATGVYLAEK--GLKVVIVSTDPA 65 (349)
T ss_dssp THHHHHHHHHHHHHHS--SCCEEEEECCTT
T ss_pred cHHHHHHHHHHHHHHC--CCeEEEEeCCCC
Confidence 4557788899999998 778888888864
No 220
>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A
Probab=36.69 E-value=1.3e+02 Score=26.03 Aligned_cols=54 Identities=11% Similarity=0.004 Sum_probs=36.6
Q ss_pred HHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCc
Q psy15555 308 LRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGL 378 (488)
Q Consensus 308 l~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad 378 (488)
...|.++.++++ +++.++++|+|+ +=++.++.+++| |..--++.++.+++.+-+
T Consensus 217 esCFerI~~RFG----~k~~yvvIGDG~---------eEe~AAk~~n~P----FwrI~~h~Dl~~l~~al~ 270 (274)
T 3geb_A 217 ESCFERIMQRFG----RKAVYVVIGDGV---------EEEQGAKKHNMP----FWRISCHADLEALRHALE 270 (274)
T ss_dssp HHHHHHHHHHHC----TTSEEEEEESSH---------HHHHHHHHTTCC----EEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC----CCceEEEECCCH---------HHHHHHHHcCCC----eEEeecCccHHHHHHhhc
Confidence 356777877774 899999999995 335566677665 333335577877776544
No 221
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=36.26 E-value=88 Score=24.95 Aligned_cols=82 Identities=12% Similarity=0.099 Sum_probs=50.6
Q ss_pred EEEecCCChHHHHHHHHh-----Cc-EEEEcCCCCcCCccHHHHH-HcCCcEEEeCCCCC-ccc------eeccCCCccc
Q psy15555 359 VEFKVNLPYEDMKKEFSE-----GL-IGLHAMWNEHFGIGIVECM-AAGLIMIAHKSGGP-KMD------IVIEDPETCR 424 (488)
Q Consensus 359 v~~~g~~~~~el~~~~~~-----ad-~~v~~s~~e~~g~~~lEa~-a~G~PvI~~~~~~~-~~e------iv~~~~~~~~ 424 (488)
+.+...=..+|+.+.+.. .| +++.|..+-..+..+.+|+ +.++|+|=--.... .+| ++.+. .
T Consensus 61 v~~~QSN~EGeLId~Ih~A~~~~~dgIIINpgAyTHtSvAlrDAL~~v~~P~VEVHiSNihaRE~FRh~S~~s~~----a 136 (167)
T 3kip_A 61 VLVFQSNTEGFIIDRIHEAKRQGVGFVVINAGAYTHTSVGIRDALLGTAIPFIEVHITNVHQREPFRHQSYLSDK----A 136 (167)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCEEEEECGGGGGTCHHHHHHHHHTTCCEEEEESSCGGGSCGGGGCCSSGGG----S
T ss_pred EEEEecCCHHHHHHHHHHhhhcCccEEEEccccceeccHHHHHHHHhcCCCEEEEEcCCccccccchhccccccc----c
Confidence 444443344555555443 45 7788888888899999987 56899997433222 113 33333 4
Q ss_pred cceecC-CHHHHHHHHHHHHc
Q psy15555 425 NGFLAC-DEVEYAQTIKLILH 444 (488)
Q Consensus 425 ~g~~~~-~~~~l~~~i~~ll~ 444 (488)
.|.++. -.+...-++..+++
T Consensus 137 ~GvI~G~G~~gY~lAl~~l~~ 157 (167)
T 3kip_A 137 VAVICGLGVYGYTAAIEYALN 157 (167)
T ss_dssp SEEEESSTTHHHHHHHHHHTT
T ss_pred eEEEEeCChhhHHHHHHHHHH
Confidence 566666 67777777777664
No 222
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=36.22 E-value=94 Score=24.45 Aligned_cols=96 Identities=9% Similarity=0.135 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhC----c-EEEEcCCCCcCCccHHHHHHc-CCcEEEeCCCCC--cc
Q psy15555 342 CVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEG----L-IGLHAMWNEHFGIGIVECMAA-GLIMIAHKSGGP--KM 413 (488)
Q Consensus 342 ~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~a----d-~~v~~s~~e~~g~~~lEa~a~-G~PvI~~~~~~~--~~ 413 (488)
..+.+++.++++|+ .+.+...=..+|+.+.+..| | +++.|..+-+.+..+.+|++. ++|+|=-..... ++
T Consensus 31 i~~~l~~~a~~~g~--~l~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE 108 (154)
T 1uqr_A 31 IEQHLQQSAQAQGY--ELDYFQANGEESLINRIHQAFQNTDFIIINPGAFTHTSVAIRDALLAVSIPFIEVHLSNVHARE 108 (154)
T ss_dssp HHHHHHHHHHHTTC--EEEEEECSSHHHHHHHHHHTTTTCCEEEEECTTHHHHCHHHHHHHHHHTCCEEEEESSCGGGSC
T ss_pred HHHHHHHHHHHCCC--EEEEEeeCCHHHHHHHHHHhhhcCcEEEECcchhccchHHHHHHHHhCCCCEEEEEecCccccc
Confidence 33555666666664 35555544556777776655 4 677787777788889988754 899997433222 11
Q ss_pred -----ceeccCCCccccceecC-CHHHHHHHHHHHH
Q psy15555 414 -----DIVIEDPETCRNGFLAC-DEVEYAQTIKLIL 443 (488)
Q Consensus 414 -----eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll 443 (488)
.++.+. ..|.++. -.+...-++..++
T Consensus 109 ~FRh~S~~s~~----a~GvI~G~G~~gY~lAl~a~~ 140 (154)
T 1uqr_A 109 PFRHHSYLSDV----AKGVICGLGAKGYDYALDFAI 140 (154)
T ss_dssp GGGSCCSSGGG----SSEEEESSTTHHHHHHHHHHH
T ss_pred ccccccccCcc----eeEEEEecCHHHHHHHHHHHH
Confidence 233333 4566665 5565555555544
No 223
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=35.62 E-value=1.7e+02 Score=23.78 Aligned_cols=67 Identities=4% Similarity=-0.073 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCCCCcEEEecC-CChHHHHHHHHh-----CcEEEEcCCCCcCCccHHHHHHcCCcEEEeCC
Q psy15555 341 VCVKDMQDLCKHLSLENNVEFKVN-LPYEDMKKEFSE-----GLIGLHAMWNEHFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 341 ~~~~~l~~~~~~~~l~~~v~~~g~-~~~~el~~~~~~-----ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~ 408 (488)
...++..+.++++|++..+...+- ...+++.++.+. ++++|.....++ .+.-+=|...-+|||.-+.
T Consensus 35 ~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa-~LpgvvA~~t~~PVIgVP~ 107 (182)
T 1u11_A 35 ETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAA-HLPGMCAAWTRLPVLGVPV 107 (182)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSC-CHHHHHHHHCSSCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchh-hhHHHHHhccCCCEEEeeC
Confidence 445555555566665544444432 233555555543 456655432222 3344455556777777554
No 224
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=35.58 E-value=1.4e+02 Score=27.26 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=40.6
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHH--HhCcEEEEcCCCCcCCccHHHHHHcCC
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEF--SEGLIGLHAMWNEHFGIGIVECMAAGL 401 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~--~~ad~~v~~s~~e~~g~~~lEa~a~G~ 401 (488)
+++.++-+-+.. . +..++.+++.|.+. ..++.+++ ...|+++..+....-.-.+.+++..|+
T Consensus 28 ~~~~lvav~d~~----~---~~~~~~~~~~g~~~---------~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk 91 (354)
T 3db2_A 28 EKLKLVTCYSRT----E---DKREKFGKRYNCAG---------DATMEALLAREDVEMVIITVPNDKHAEVIEQCARSGK 91 (354)
T ss_dssp SSEEEEEEECSS----H---HHHHHHHHHHTCCC---------CSSHHHHHHCSSCCEEEECSCTTSHHHHHHHHHHTTC
T ss_pred CCcEEEEEECCC----H---HHHHHHHHHcCCCC---------cCCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHHcCC
Confidence 677776443321 1 44555566666431 14556666 357866665533322334678999999
Q ss_pred cEEEeCC
Q psy15555 402 IMIAHKS 408 (488)
Q Consensus 402 PvI~~~~ 408 (488)
+|++-..
T Consensus 92 ~vl~EKP 98 (354)
T 3db2_A 92 HIYVEKP 98 (354)
T ss_dssp EEEEESS
T ss_pred EEEEccC
Confidence 9998654
No 225
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=35.26 E-value=91 Score=26.30 Aligned_cols=40 Identities=10% Similarity=0.017 Sum_probs=22.4
Q ss_pred ccccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCC
Q psy15555 50 NVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVD 96 (488)
Q Consensus 50 ~~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~ 96 (488)
..+|||+++.+ |....+..++.++.+ ..+++|..+.+.++
T Consensus 10 ~~~~ri~vl~S------G~gsnl~all~~~~~-~~~~eI~~Vis~~~ 49 (215)
T 3da8_A 10 SAPARLVVLAS------GTGSLLRSLLDAAVG-DYPARVVAVGVDRE 49 (215)
T ss_dssp CSSEEEEEEES------SCCHHHHHHHHHSST-TCSEEEEEEEESSC
T ss_pred CCCcEEEEEEe------CChHHHHHHHHHHhc-cCCCeEEEEEeCCc
Confidence 45679988632 333455566666644 23456665555443
No 226
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=35.23 E-value=1.4e+02 Score=27.42 Aligned_cols=79 Identities=9% Similarity=-0.000 Sum_probs=44.4
Q ss_pred HHhCc-EEEEcCCCCcCCcc-HHHHHHcCCcEEEeCCCCCcccee-ccCCCccccceecC-CHHHHHHHHHHHHccCHHH
Q psy15555 374 FSEGL-IGLHAMWNEHFGIG-IVECMAAGLIMIAHKSGGPKMDIV-IEDPETCRNGFLAC-DEVEYAQTIKLILHLSQDT 449 (488)
Q Consensus 374 ~~~ad-~~v~~s~~e~~g~~-~lEa~a~G~PvI~~~~~~~~~eiv-~~~~~~~~~g~~~~-~~~~l~~~i~~ll~~~~~~ 449 (488)
...|| +++.++....+|.. +.+....|.|+|.-|..... .+- ... ...+.+. +.++....|.+.+. -.+.
T Consensus 217 ~~~aDllLviGTSl~V~Paa~l~~~~~~g~~~v~IN~~~t~-~~~~~~~----~~d~~i~g~~~evl~~L~~~Lg-~~~~ 290 (361)
T 1q14_A 217 HPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVG-DFKANKR----PTDLIVHQYSDEFAEQLVEELG-WQED 290 (361)
T ss_dssp --CCCEEEEESCCCCSTTGGGHHHHSCTTSEEEEESSSCCH-HHHHTCC----TTCEEECSCHHHHHHHHHHHHT-CHHH
T ss_pred hccCCEEEEECCCCCchhHHHHHHHHhcCCeEEEEeCCCcc-ccccCcc----cccEEEeCCHHHHHHHHHHHcC-ChhH
Confidence 45899 44555554445543 45555569999988764331 110 111 2234443 88888888877777 6666
Q ss_pred HHHHHHHHH
Q psy15555 450 KTRISQNAV 458 (488)
Q Consensus 450 ~~~~~~~a~ 458 (488)
..++.....
T Consensus 291 l~~~~~~~~ 299 (361)
T 1q14_A 291 FEKILTAQG 299 (361)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhhh
Confidence 666655544
No 227
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=34.59 E-value=99 Score=25.76 Aligned_cols=106 Identities=9% Similarity=0.108 Sum_probs=61.3
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH--cC
Q psy15555 326 LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA--AG 400 (488)
Q Consensus 326 ~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a--~G 400 (488)
.++.|+.+.+ ...+.+....+..|. .|.... +.++....+.. .|+++.-. ..+.-|..+++.+. ..
T Consensus 5 ~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~al~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~ 75 (230)
T 2oqr_A 5 TSVLIVEDEE-----SLADPLAFLLRKEGF--EATVVT--DGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSS 75 (230)
T ss_dssp CEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEEC--SHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHHCS
T ss_pred CeEEEEeCCH-----HHHHHHHHHHHHCCC--EEEEEC--CHHHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHHcCCC
Confidence 4667777654 555677777776654 244333 33565555543 57655543 33334555555543 47
Q ss_pred CcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 401 LIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 401 ~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
+|||.-....... +.++.+ ..+++.. +.+++.+++..++.
T Consensus 76 ~~ii~lt~~~~~~~~~~~~~~g----a~~~l~Kp~~~~~l~~~i~~~~~ 120 (230)
T 2oqr_A 76 VPVIMVTARDSEIDKVVGLELG----ADDYVTKPYSARELIARIRAVLR 120 (230)
T ss_dssp CSEEEEECCHHHHHHHHHHHHC----CSCCCCSSCCHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCcHHHHHHHHHcC----CCEEEeCCCCHHHHHHHHHHHHh
Confidence 8888743322211 223333 5567765 89999999998876
No 228
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=34.54 E-value=2.6e+02 Score=25.21 Aligned_cols=38 Identities=13% Similarity=-0.088 Sum_probs=22.3
Q ss_pred ccccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 50 NVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 50 ~~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
+.++||+++-. |. ......+..|.+..++++++.++..
T Consensus 16 ~~~irvgiIG~------G~-~~g~~~~~~l~~~~~~~~lvav~d~ 53 (340)
T 1zh8_A 16 LRKIRLGIVGC------GI-AARELHLPALKNLSHLFEITAVTSR 53 (340)
T ss_dssp CCCEEEEEECC------SH-HHHHTHHHHHHTTTTTEEEEEEECS
T ss_pred CCceeEEEEec------CH-HHHHHHHHHHHhCCCceEEEEEEcC
Confidence 44689998731 10 2223345677665468888776654
No 229
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=34.43 E-value=1.6e+02 Score=25.22 Aligned_cols=40 Identities=10% Similarity=-0.070 Sum_probs=22.3
Q ss_pred ccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 52 ~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
+++++++.+... -.+..+-..+..+.++|..+.+++.|..
T Consensus 3 ~~~vL~v~aHPD---De~l~~Ggtia~~~~~G~~V~vv~lT~G 42 (242)
T 2ixd_A 3 GLHILAFGAHAD---DVEIGMAGTIAKYTKQGYEVGICDLTEA 42 (242)
T ss_dssp CCSEEEEESSTT---HHHHHHHHHHHHHHHTTCCEEEEEEECC
T ss_pred CccEEEEEeCCC---hHHHhHHHHHHHHHHCCCeEEEEEEcCC
Confidence 357777765433 1222223334455667777877777653
No 230
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=34.36 E-value=66 Score=28.27 Aligned_cols=34 Identities=21% Similarity=0.490 Sum_probs=23.7
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
..|+++- ++.+| ...++++.++.|+.+++.+..+
T Consensus 6 ~~IgvfD--SGvGG------ltv~~~i~~~lP~~~~iy~~D~ 39 (269)
T 3ist_A 6 QAIGFID--SGVGG------LTVVREVLKQLPHEQVYYLGDT 39 (269)
T ss_dssp CCEEEEE--SSSTT------HHHHHHHHHHCTTCCEEEEECG
T ss_pred CcEEEEE--CCccH------HHHHHHHHHHCCCCcEEEEeCC
Confidence 4688874 44455 5566888888888887766554
No 231
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=34.34 E-value=1.7e+02 Score=25.24 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=21.4
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
|+|+++.. +.+| ..+.+++.+..|+.+++.+..+
T Consensus 1 ~~IgvfDS--G~Gg------ltv~~~l~~~~P~~~~iy~~D~ 34 (254)
T 1b73_A 1 MKIGIFDS--GVGG------LTVLKAIRNRYRKVDIVYLGDT 34 (254)
T ss_dssp CEEEEEES--SSGG------GTHHHHHHHHSTTCEEEEEECT
T ss_pred CcEEEEEC--CccH------HHHHHHHHHhCCCCcEEEeecC
Confidence 68998843 3222 3455777887877776655554
No 232
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=34.23 E-value=37 Score=25.91 Aligned_cols=38 Identities=8% Similarity=-0.021 Sum_probs=24.1
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCe-eEEE
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDY-KIYI 90 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~-~v~~ 90 (488)
||++++....+.+.-..+.+..++.++.+.++++ .|++
T Consensus 1 mk~~iiv~~~p~~~~~~~~al~~a~a~~~~g~~v~~vff 39 (130)
T 2hy5_A 1 MKFALQINEGPYQHQASDSAYQFAKAALEKGHEIFRVFF 39 (130)
T ss_dssp CEEEEEECSCTTTSTHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCeeCEEEE
Confidence 6788766443322223367888999999987766 4443
No 233
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=33.72 E-value=2.4e+02 Score=25.30 Aligned_cols=107 Identities=8% Similarity=-0.060 Sum_probs=59.0
Q ss_pred HHHHHHHHhCcEEEE-cCCCCcCCccHHHHHHcCCc-EEEeCCCCCc-cceecc--CCCccccceecC-CHHHHHHHHHH
Q psy15555 368 EDMKKEFSEGLIGLH-AMWNEHFGIGIVECMAAGLI-MIAHKSGGPK-MDIVIE--DPETCRNGFLAC-DEVEYAQTIKL 441 (488)
Q Consensus 368 ~el~~~~~~ad~~v~-~s~~e~~g~~~lEa~a~G~P-vI~~~~~~~~-~eiv~~--~~~~~~~g~~~~-~~~~l~~~i~~ 441 (488)
..-..-++.||++|. +...|+|--.++++.. +.+ +|.... +.. .....+ + .....-|+-+ +...+++.|.+
T Consensus 79 p~d~~~l~~ADlvv~~G~~lE~w~~~~~~~~~-~~~~~v~~s~-~i~~~~~~~~~~~-~~DPHvWldp~n~~~~a~~I~~ 155 (313)
T 1toa_A 79 AGDVEWLGNADLILYNGLHLETKMGEVFSKLR-GSRLVVAVSE-TIPVSQRLSLEEA-EFDPHVWFDVKLWSYSVKAVYE 155 (313)
T ss_dssp HHHHHHHHHCSEEEECCTTCSTTCHHHHHHHT-TSSEEEEGGG-GSCGGGSCBSTTS-CBCCCGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEcCCCcHHHHHHHHHhcc-CCCeEEEeec-CcccccccccCCC-CCCCceeCCHHHHHHHHHHHHH
Confidence 344466799997665 4467888888888876 444 444221 221 011110 1 0002233333 55666666665
Q ss_pred HH-ccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q psy15555 442 IL-HLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQP 479 (488)
Q Consensus 442 ll-~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~ 479 (488)
.| +.||+......+|+.++.++ .+..-+++.+.+..
T Consensus 156 ~L~~~DP~~a~~Y~~N~~~~~~~--L~~Ld~~~~~~l~~ 192 (313)
T 1toa_A 156 SLCKLLPGKTREFTQRYQAYQQQ--LDKLDAYVRRKAQS 192 (313)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHH--HHHHHHHHHHHHHT
T ss_pred HHHHHChhhHHHHHHHHHHHHHH--HHHHHHHHHHHHhh
Confidence 44 34888888888888776655 45555555555543
No 234
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=33.04 E-value=40 Score=25.85 Aligned_cols=72 Identities=8% Similarity=0.017 Sum_probs=48.9
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCC------CcE--EEecCCChHHHHHHH--Hh-------CcEE-EEcCC
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLE------NNV--EFKVNLPYEDMKKEF--SE-------GLIG-LHAMW 385 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~------~~v--~~~g~~~~~el~~~~--~~-------ad~~-v~~s~ 385 (488)
+++.+.|++.+... .|.+-+.+++.+.|.. +.| ++....+.+++..++ .. ..+- +..+
T Consensus 12 ~~v~iyive~kmG~---sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~s~~~~~~~L~~~~~~l~~~~~~~~lLdis- 87 (133)
T 2dun_A 12 PGVAIYLVEPRMGR---SRRAFLTGLARSKGFRVLDACSSEATHVVMEETSAEEAVSWQERRMAAAPPGCTPPALLDIS- 87 (133)
T ss_dssp EEEEEEECHHHHCS---HHHHHHHHHHHHHTEEECSSCCTTCCEEEESSCCHHHHHHHHHHHHHHSCTTCCCCEEEEHH-
T ss_pred CccEEEEecCCcCH---HHHHHHHHHHHhcCCEeccccCCCceEEEecCCCHHHHHHHHHHhhcccCcCCCCcEEeccH-
Confidence 68899999987544 7888999999988862 222 223667889999888 33 2222 2211
Q ss_pred CCcCCccHHHHHHcCCcEEE
Q psy15555 386 NEHFGIGIVECMAAGLIMIA 405 (488)
Q Consensus 386 ~e~~g~~~lEa~a~G~PvI~ 405 (488)
=+.|.|.+|.||=.
T Consensus 88 ------Wltecm~~g~pV~~ 101 (133)
T 2dun_A 88 ------WLTESLGAGQPVPV 101 (133)
T ss_dssp ------HHHHHHHHTSCCCC
T ss_pred ------HHHHHHhcCCcCCc
Confidence 15799999999843
No 235
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=33.04 E-value=83 Score=23.29 Aligned_cols=70 Identities=6% Similarity=-0.145 Sum_probs=41.6
Q ss_pred HHHHhCcEEEEcCCCCcCC-----ccHHHHHHcCCcEEEeCCCCCccceeccCCCccccceecC-CHHHHHHHHHHHHc
Q psy15555 372 KEFSEGLIGLHAMWNEHFG-----IGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC-DEVEYAQTIKLILH 444 (488)
Q Consensus 372 ~~~~~ad~~v~~s~~e~~g-----~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll~ 444 (488)
.-++.||++|..+...+-. .-+-.|...|+|+|+-...|.. ++-..- .....-++. |.+.+.++|...++
T Consensus 34 ~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~-~~P~~l--~~~a~~iV~Wn~~~I~~aI~~~~~ 109 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLE-NVPPEL--EAVSSEVVGWNPHCIRDALEDALD 109 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSS-CCCTTH--HHHCSEEECSCHHHHHHHHHHHHC
T ss_pred CccccCCEEEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCC-cCCHHH--HhhCceeccCCHHHHHHHHHhccC
Confidence 4467799666544222211 2256688899999997765542 221111 001234455 89999999988764
No 236
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=32.85 E-value=1.6e+02 Score=24.10 Aligned_cols=108 Identities=6% Similarity=0.050 Sum_probs=58.6
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEec-CCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHHc-
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKV-NLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMAA- 399 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g-~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a~- 399 (488)
..++.|+.+.+ ...+.+....+..+ .+...+ .-+.++....+.. .|+++.-. ..+.-|..+++.+..
T Consensus 5 ~~~ilivdd~~-----~~~~~l~~~L~~~~---~~~vv~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~ 76 (215)
T 1a04_A 5 PATILLIDDHP-----MLRTGVKQLISMAP---DITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREK 76 (215)
T ss_dssp CEEEEEECSCH-----HHHHHHHHHHTTCT---TEEEEEEESSHHHHHHHHHHHCCSEEEEETTSTTSCHHHHHHHHHHS
T ss_pred ceEEEEECCCH-----HHHHHHHHHHhcCC---CcEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHHh
Confidence 46777777664 44455666665432 122211 1233555555543 56655533 333345666665542
Q ss_pred --CCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 --GLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 --G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..|||.-......+ +.++.+ ..+++.. +.+++.+++..++.
T Consensus 77 ~~~~~ii~ls~~~~~~~~~~~~~~G----a~~~l~Kp~~~~~L~~~i~~~~~ 124 (215)
T 1a04_A 77 SLSGRIVVFSVSNHEEDVVTALKRG----ADGYLLKDMEPEDLLKALHQAAA 124 (215)
T ss_dssp CCCSEEEEEECCCCHHHHHHHHHTT----CSEEEETTCCHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCHHHHHHHHHcC----CcEEEeCCCCHHHHHHHHHHHHc
Confidence 56777643322221 223333 5677765 89999999988875
No 237
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=32.65 E-value=79 Score=28.55 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=27.3
Q ss_pred HHHHHHHH--hCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCC
Q psy15555 368 EDMKKEFS--EGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 368 ~el~~~~~--~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~ 408 (488)
.++.++++ ..|+++..+....-.-.+.+++..|++|++-..
T Consensus 57 ~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP 99 (329)
T 3evn_A 57 DKLEDMLADESIDVIYVATINQDHYKVAKAALLAGKHVLVEKP 99 (329)
T ss_dssp SCHHHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred CCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHCCCeEEEccC
Confidence 45556676 688766655333223346789999999999654
No 238
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=32.15 E-value=1.6e+02 Score=22.12 Aligned_cols=61 Identities=8% Similarity=-0.001 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCCC---cEEEecCCChHHHHHHHH--hCcEEEEcCCCCc-----CCccHHHHH--HcCCcEEE
Q psy15555 345 DMQDLCKHLSLEN---NVEFKVNLPYEDMKKEFS--EGLIGLHAMWNEH-----FGIGIVECM--AAGLIMIA 405 (488)
Q Consensus 345 ~l~~~~~~~~l~~---~v~~~g~~~~~el~~~~~--~ad~~v~~s~~e~-----~g~~~lEa~--a~G~PvI~ 405 (488)
++.+.+++.|++. .......-+.+++.++-. .+|++|+++...+ +--++.|.+ .++|||+.
T Consensus 74 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlv 146 (147)
T 3hgm_A 74 QAKTRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLV 146 (147)
T ss_dssp HHHHHHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCCCCEEE
Confidence 3344444555443 222222235567777766 6887777764321 111334433 44788764
No 239
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=31.53 E-value=1.3e+02 Score=23.77 Aligned_cols=95 Identities=13% Similarity=0.119 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh----Cc-EEEEcCCCCcCCccHHHHHHc-C-CcEEEeCCCCC--cc
Q psy15555 343 VKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE----GL-IGLHAMWNEHFGIGIVECMAA-G-LIMIAHKSGGP--KM 413 (488)
Q Consensus 343 ~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~----ad-~~v~~s~~e~~g~~~lEa~a~-G-~PvI~~~~~~~--~~ 413 (488)
.+.+++.++++|+ .+.+...=..+|+.+.+.. .| +++.|..+-+.+..+.+|++. + +|+|=-..... ++
T Consensus 37 ~~~l~~~a~~~g~--~v~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSvAlrDAl~~v~~~P~VEVHiSNi~aRE 114 (156)
T 1gtz_A 37 EALCVKAAAAHGG--TVDFRQSNHEGELVDWIHEARLNHCGIVINPAAYSHTSVAILDALNTCDGLPVVEVHISNIHQRE 114 (156)
T ss_dssp HHHHHHHHHTTTC--CEEEEECSCHHHHHHHHHHHHHHCSEEEEECTTHHHHCHHHHHHHHTSTTCCEEEEESSCGGGSC
T ss_pred HHHHHHHHHHcCC--EEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccHHHHHHHHhcCCCCEEEEEecCccccc
Confidence 3455566666665 3666554445666655544 56 677887777788899999876 5 89987333222 11
Q ss_pred -----ceeccCCCccccceecC-CHHHHHHHHHHHH
Q psy15555 414 -----DIVIEDPETCRNGFLAC-DEVEYAQTIKLIL 443 (488)
Q Consensus 414 -----eiv~~~~~~~~~g~~~~-~~~~l~~~i~~ll 443 (488)
.++.+. ..|.++. -.+...-++..++
T Consensus 115 ~FRh~S~~s~~----a~GvI~G~G~~gY~lAl~a~~ 146 (156)
T 1gtz_A 115 PFRHHSYVSQR----ADGVVAGCGVQGYVFGVERIA 146 (156)
T ss_dssp GGGSCCSGGGT----CSEEEESSTTHHHHHHHHHHH
T ss_pred ccccccccCcc----eeEEEEecCHHHHHHHHHHHH
Confidence 233333 4566665 5566555555544
No 240
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=31.35 E-value=1.3e+02 Score=27.26 Aligned_cols=69 Identities=14% Similarity=0.056 Sum_probs=40.8
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHH--hCcEEEEcCCCCcCCccHHHHHHcCC
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS--EGLIGLHAMWNEHFGIGIVECMAAGL 401 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~--~ad~~v~~s~~e~~g~~~lEa~a~G~ 401 (488)
+++.++-+-+.. . +..++.+++.| +... .++.+++. .+|+++..+....-.-.+.+++..|+
T Consensus 27 ~~~~l~av~d~~----~---~~~~~~a~~~g----~~~~-----~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk 90 (344)
T 3euw_A 27 PDLELVVIADPF----I---EGAQRLAEANG----AEAV-----ASPDEVFARDDIDGIVIGSPTSTHVDLITRAVERGI 90 (344)
T ss_dssp TTEEEEEEECSS----H---HHHHHHHHTTT----CEEE-----SSHHHHTTCSCCCEEEECSCGGGHHHHHHHHHHTTC
T ss_pred CCcEEEEEECCC----H---HHHHHHHHHcC----Ccee-----CCHHHHhcCCCCCEEEEeCCchhhHHHHHHHHHcCC
Confidence 677776443321 1 44555566554 2222 34556677 78876665533332335678999999
Q ss_pred cEEEeCC
Q psy15555 402 IMIAHKS 408 (488)
Q Consensus 402 PvI~~~~ 408 (488)
+|++-..
T Consensus 91 ~v~~EKP 97 (344)
T 3euw_A 91 PALCEKP 97 (344)
T ss_dssp CEEECSC
T ss_pred cEEEECC
Confidence 9998654
No 241
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=31.16 E-value=1.6e+02 Score=24.83 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=13.7
Q ss_pred HHHHHHhhhcCCcEEEec
Q psy15555 149 ILGVEALLSFQPDIYIDT 166 (488)
Q Consensus 149 ~~~~~~l~~~~pDiii~~ 166 (488)
..+.+.+++++||+|+..
T Consensus 85 ~~l~~~ir~~~P~~V~t~ 102 (227)
T 1uan_A 85 LKLAQALRRLRPRVVFAP 102 (227)
T ss_dssp HHHHHHHHHHCEEEEEEE
T ss_pred HHHHHHHHHhCCCEEEeC
Confidence 446678889999998754
No 242
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=30.88 E-value=3e+02 Score=24.79 Aligned_cols=35 Identities=9% Similarity=-0.028 Sum_probs=21.5
Q ss_pred ccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 52 ~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
++||+++. ........++.+.+..++++++..+..
T Consensus 2 ~~rigiIG--------~G~~g~~~~~~l~~~~~~~~l~av~d~ 36 (344)
T 3mz0_A 2 SLRIGVIG--------TGAIGKEHINRITNKLSGAEIVAVTDV 36 (344)
T ss_dssp CEEEEEEC--------CSHHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred eEEEEEEC--------ccHHHHHHHHHHHhhCCCcEEEEEEcC
Confidence 36888873 223344566777744568887765554
No 243
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=30.81 E-value=1.5e+02 Score=21.18 Aligned_cols=105 Identities=8% Similarity=0.070 Sum_probs=55.2
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHH--hCcEEEEcC-CCCcCCccHHHHHH--cCC
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS--EGLIGLHAM-WNEHFGIGIVECMA--AGL 401 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~--~ad~~v~~s-~~e~~g~~~lEa~a--~G~ 401 (488)
++.++.+.+ ...+.+.+..+..|. .+..... ..+....+. ..|+++.-. ..+.-|..+++.+. ...
T Consensus 3 ~ilivdd~~-----~~~~~l~~~l~~~~~--~v~~~~~--~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~ 73 (121)
T 1zh2_A 3 NVLIVEDEQ-----AIRRFLRTALEGDGM--RVFEAET--LQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAV 73 (121)
T ss_dssp EEEEECSCH-----HHHHHHHHHHHTTTC--EEEEESS--HHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHTTCCC
T ss_pred EEEEEeCCH-----HHHHHHHHHHhcCCC--EEEEeCC--HHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhCCCC
Confidence 455666553 455666777766553 2333332 244433333 357655433 22334556666654 356
Q ss_pred cEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 402 IMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 402 PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
|+|......... +..+.+ ..+++.. +.+++.+++..++.
T Consensus 74 ~ii~~s~~~~~~~~~~~~~~g----~~~~l~Kp~~~~~l~~~i~~~~~ 117 (121)
T 1zh2_A 74 PVIVLSARSEESDKIAALDAG----ADDYLSKPFGIGELQARLRVALR 117 (121)
T ss_dssp CEEEEESCCSHHHHHHHHHHT----CSEEEESSCCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCHHHHHHHHhcC----CCeEEeCCcCHHHHHHHHHHHHH
Confidence 776643222211 223333 4567765 88999988887664
No 244
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=30.58 E-value=1.1e+02 Score=28.21 Aligned_cols=56 Identities=13% Similarity=0.224 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcCCCCcCCccHHHHHHcCCcEEEeC
Q psy15555 344 KDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAMWNEHFGIGIVECMAAGLIMIAHK 407 (488)
Q Consensus 344 ~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~ 407 (488)
+..++.+++++.+. .. .++.++++. .|+++..+....-.-.+.+|+..|++|++-.
T Consensus 57 ~~a~~~a~~~~~~~---~~-----~~~~~ll~~~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~EK 114 (383)
T 3oqb_A 57 EKVEALAKRFNIAR---WT-----TDLDAALADKNDTMFFDAATTQARPGLLTQAINAGKHVYCEK 114 (383)
T ss_dssp HHHHHHHHHTTCCC---EE-----SCHHHHHHCSSCCEEEECSCSSSSHHHHHHHHTTTCEEEECS
T ss_pred HHHHHHHHHhCCCc---cc-----CCHHHHhcCCCCCEEEECCCchHHHHHHHHHHHCCCeEEEcC
Confidence 55666777777531 11 345555655 6766655533332335689999999999854
No 245
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=30.31 E-value=3e+02 Score=24.69 Aligned_cols=98 Identities=15% Similarity=0.058 Sum_probs=59.3
Q ss_pred CeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChH
Q psy15555 289 PVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYE 368 (488)
Q Consensus 289 ~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 368 (488)
.-+++..|+. ..++..+....+++ .++++++.-..|..+. ..+.....+.|++ ++++. +.
T Consensus 122 g~~ILTh~~S------~tv~~~l~~A~~~g-----k~~~V~v~EsrP~~qG----~~la~~L~~~gI~--vtli~---Ds 181 (315)
T 3ecs_A 122 GATILTHAYS------RVVLRVLEAAVAAK-----KRFSVYVTESQPDLSG----KKMAKALCHLNVP--VTVVL---DA 181 (315)
T ss_dssp TEEEEECSCC------HHHHHHHHHHHTTT-----CCEEEEEECCTTTTHH----HHHHHHHHTTTCC--EEEEC---GG
T ss_pred CCEEEEcCCc------HHHHHHHHHHHHcC-----CeEEEEEecCCCcchH----HHHHHHHHHcCCC--EEEEe---hh
Confidence 3456665543 25566666665554 6788877776664321 3445555666764 55554 36
Q ss_pred HHHHHHHhCcEEEEcC--CCCcCCc--------cHHHHHHcCCcEEEe
Q psy15555 369 DMKKEFSEGLIGLHAM--WNEHFGI--------GIVECMAAGLIMIAH 406 (488)
Q Consensus 369 el~~~~~~ad~~v~~s--~~e~~g~--------~~lEa~a~G~PvI~~ 406 (488)
-+..+++..|.++.+. ....++. ..+=|-..|+|+++-
T Consensus 182 a~~~~m~~vd~VivGAd~i~~nG~v~nkiGT~~iAl~Ak~~~vP~~V~ 229 (315)
T 3ecs_A 182 AVGYIMEKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVV 229 (315)
T ss_dssp GHHHHGGGCSEEEEECSEECTTSCEEEETTHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHhCCEEEECceEEecCCCeeehhhhHHHHHHHHHhCCCEEEE
Confidence 7888999999555554 2333332 245677789999874
No 246
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=30.16 E-value=1e+02 Score=28.98 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh-------CcEEEEcCCCCcCCccHHHHHHcCCcEEEeCC
Q psy15555 344 KDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE-------GLIGLHAMWNEHFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 344 ~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~-------ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~ 408 (488)
+..++.++++|++.. .. + .++.++++. .|+++..+....-.-.+.+|+..|++|++-..
T Consensus 77 ~~a~~~a~~~g~~~~-~~--~---~~~~~ll~~~~~~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP 142 (417)
T 3v5n_A 77 EKAEASGRELGLDPS-RV--Y---SDFKEMAIREAKLKNGIEAVAIVTPNHVHYAAAKEFLKRGIHVICDKP 142 (417)
T ss_dssp HHHHHHHHHHTCCGG-GB--C---SCHHHHHHHHHHCTTCCSEEEECSCTTSHHHHHHHHHTTTCEEEEESS
T ss_pred HHHHHHHHHcCCCcc-cc--c---CCHHHHHhcccccCCCCcEEEECCCcHHHHHHHHHHHhCCCeEEEECC
Confidence 455666777776421 11 1 344555555 88666655333223356889999999999654
No 247
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=30.13 E-value=40 Score=31.39 Aligned_cols=92 Identities=14% Similarity=0.162 Sum_probs=51.2
Q ss_pred CCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEE-EEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCC
Q psy15555 288 GPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLI-FIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLP 366 (488)
Q Consensus 288 ~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~-ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 366 (488)
.+..++.+|.- . | ..-++++.++. +++.++ |+.+.+ +..++.++++|++ .....
T Consensus 6 ~~~rv~VvG~G--~-g-~~h~~a~~~~~--------~~~elvav~~~~~--------~~a~~~a~~~gv~----~~~~~- 60 (372)
T 4gmf_A 6 PKQRVLIVGAK--F-G-EMYLNAFMQPP--------EGLELVGLLAQGS--------ARSRELAHAFGIP----LYTSP- 60 (372)
T ss_dssp -CEEEEEECST--T-T-HHHHHTTSSCC--------TTEEEEEEECCSS--------HHHHHHHHHTTCC----EESSG-
T ss_pred CCCEEEEEehH--H-H-HHHHHHHHhCC--------CCeEEEEEECCCH--------HHHHHHHHHhCCC----EECCH-
Confidence 46678888852 2 3 12355554442 246766 344443 5566777888764 22333
Q ss_pred hHHHHHHHHhCcEEEEcCC-CCcCC--c-cHHHHHHcCCcEEEeCC
Q psy15555 367 YEDMKKEFSEGLIGLHAMW-NEHFG--I-GIVECMAAGLIMIAHKS 408 (488)
Q Consensus 367 ~~el~~~~~~ad~~v~~s~-~e~~g--~-~~lEa~a~G~PvI~~~~ 408 (488)
+++ +...|+.+..+. .-..+ . ...+++..|++|++-..
T Consensus 61 -~~l---~~~~D~v~i~~p~~~h~~~~~~~a~~al~aGkhVl~EKP 102 (372)
T 4gmf_A 61 -EQI---TGMPDIACIVVRSTVAGGAGTQLARHFLARGVHVIQEHP 102 (372)
T ss_dssp -GGC---CSCCSEEEECCC--CTTSHHHHHHHHHHHTTCEEEEESC
T ss_pred -HHH---hcCCCEEEEECCCcccchhHHHHHHHHHHcCCcEEEecC
Confidence 555 457885544332 22222 1 36788999999999654
No 248
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=29.67 E-value=87 Score=29.11 Aligned_cols=69 Identities=12% Similarity=0.081 Sum_probs=39.9
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcCCCCcCCccHHHHHHcCC
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAMWNEHFGIGIVECMAAGL 401 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s~~e~~g~~~lEa~a~G~ 401 (488)
+++.++-+-+.. . +..++.+++++.+ .. .++.++++. .|+++..+....-.-.+.+++..|+
T Consensus 26 ~~~~l~av~d~~----~---~~~~~~a~~~g~~----~~-----~~~~ell~~~~vD~V~i~tp~~~H~~~~~~al~aGk 89 (387)
T 3moi_A 26 PDAQIVAACDPN----E---DVRERFGKEYGIP----VF-----ATLAEMMQHVQMDAVYIASPHQFHCEHVVQASEQGL 89 (387)
T ss_dssp TTEEEEEEECSC----H---HHHHHHHHHHTCC----EE-----SSHHHHHHHSCCSEEEECSCGGGHHHHHHHHHHTTC
T ss_pred CCeEEEEEEeCC----H---HHHHHHHHHcCCC----eE-----CCHHHHHcCCCCCEEEEcCCcHHHHHHHHHHHHCCC
Confidence 677776544331 1 3445555666643 12 344455554 7876665533322235679999999
Q ss_pred cEEEeCC
Q psy15555 402 IMIAHKS 408 (488)
Q Consensus 402 PvI~~~~ 408 (488)
+|++-..
T Consensus 90 ~Vl~EKP 96 (387)
T 3moi_A 90 HIIVEKP 96 (387)
T ss_dssp EEEECSC
T ss_pred ceeeeCC
Confidence 9998654
No 249
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=29.42 E-value=2.7e+02 Score=25.27 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=20.2
Q ss_pred cccEEEEeccCCCCCCCceehHH-HHHHHHHHhCCCeeEEEEeC
Q psy15555 51 VLKTVAFFHPYCNAGGGGERVLW-TAVLALHQKYPDYKIYIYTG 93 (488)
Q Consensus 51 ~~~rI~~~~~~~~~~gG~e~~~~-~l~~~L~~~~~~~~v~~~~~ 93 (488)
+++||+++. ...... ..+..|.+ .++++++.++.
T Consensus 26 ~~~rigiIG--------~G~~g~~~~~~~l~~-~~~~~l~av~d 60 (350)
T 3rc1_A 26 NPIRVGVIG--------CADIAWRRALPALEA-EPLTEVTAIAS 60 (350)
T ss_dssp CCEEEEEES--------CCHHHHHTHHHHHHH-CTTEEEEEEEE
T ss_pred CceEEEEEc--------CcHHHHHHHHHHHHh-CCCeEEEEEEc
Confidence 457899873 222333 45567766 35788775544
No 250
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=28.98 E-value=1.5e+02 Score=21.60 Aligned_cols=107 Identities=16% Similarity=0.112 Sum_probs=56.0
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEec-CCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH---
Q psy15555 326 LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKV-NLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA--- 398 (488)
Q Consensus 326 ~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g-~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a--- 398 (488)
.++.++.+.+ ...+.+++.....+ .....+ .-+.++....+.. .|+++.-. ..+.-|..+++.+.
T Consensus 3 ~~ilivdd~~-----~~~~~l~~~l~~~~---~~~~~~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~ 74 (130)
T 1dz3_A 3 IKVCIADDNR-----ELVSLLDEYISSQP---DMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRAGF 74 (130)
T ss_dssp EEEEEECSCH-----HHHHHHHHHHHTST---TEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred eEEEEEcCCH-----HHHHHHHHHHHhCC---CceEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 3566676553 44566666665541 122221 1133565555543 57655443 33334555666553
Q ss_pred -cCCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 -AGLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 -~G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
...|+|........+ +..+.+ ..+++.. +.+++.+++.+++.
T Consensus 75 ~~~~~ii~ls~~~~~~~~~~~~~~g----a~~~l~KP~~~~~l~~~i~~~~~ 122 (130)
T 1dz3_A 75 EHQPNVIMLTAFGQEDVTKKAVELG----ASYFILKPFDMENLAHHIRQVYG 122 (130)
T ss_dssp SSCCEEEEEEETTCHHHHHHHHHTT----CEEEEECSSCCTTHHHHHHHHHH
T ss_pred CCCCcEEEEecCCCHHHHHHHHHcC----CCEEEeCCCCHHHHHHHHHHHhc
Confidence 346666532222211 223333 4567765 88899999988875
No 251
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=28.93 E-value=47 Score=30.64 Aligned_cols=41 Identities=10% Similarity=-0.072 Sum_probs=25.8
Q ss_pred HHHHHHHHhC--cEEEEcCCCCcCCccHHHHHHcCCcEEEeCC
Q psy15555 368 EDMKKEFSEG--LIGLHAMWNEHFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 368 ~el~~~~~~a--d~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~ 408 (488)
+++.++++.. |+++..+....-.-.+.+++..|++|++-..
T Consensus 58 ~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKP 100 (359)
T 3m2t_A 58 DNVPAMLNQVPLDAVVMAGPPQLHFEMGLLAMSKGVNVFVEKP 100 (359)
T ss_dssp SSHHHHHHHSCCSEEEECSCHHHHHHHHHHHHHTTCEEEECSC
T ss_pred CCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEECC
Confidence 3555666655 8666554322222346789999999998544
No 252
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=28.88 E-value=3e+02 Score=24.16 Aligned_cols=104 Identities=9% Similarity=-0.056 Sum_probs=61.7
Q ss_pred eccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecC-CCC-------CcHHHHHHHHHHHHhcCCCCcEEEecCCCh
Q psy15555 296 AQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGST-RNE-------EDEVCVKDMQDLCKHLSLENNVEFKVNLPY 367 (488)
Q Consensus 296 g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~-~~~-------~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 367 (488)
+...+....+..++....+++.. .+ ++-.+.. |.. ...+-.+.+++.+++.|++--....+.
T Consensus 43 Agpc~~~~~e~a~~~a~~~k~~g-----a~--~~k~~~~kprts~~~f~g~g~~gl~~l~~~~~~~Gl~~~te~~d~--- 112 (276)
T 1vs1_A 43 AGPCSVESWEQVREAALAVKEAG-----AH--MLRGGAFKPRTSPYSFQGLGLEGLKLLRRAGDEAGLPVVTEVLDP--- 112 (276)
T ss_dssp EECSBCCCHHHHHHHHHHHHHHT-----CS--EEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCCEEEECCCG---
T ss_pred EecCCCCCHHHHHHHHHHHHHhC-----CC--EEEeEEEeCCCChhhhcCCCHHHHHHHHHHHHHcCCcEEEecCCH---
Confidence 33346778888888888887765 22 2222211 100 024667889999999998633333333
Q ss_pred HHHHHHHHhCcEEEEcCCCCcCCccHHH-HHHcCCcEEEeCCCC
Q psy15555 368 EDMKKEFSEGLIGLHAMWNEHFGIGIVE-CMAAGLIMIAHKSGG 410 (488)
Q Consensus 368 ~el~~~~~~ad~~v~~s~~e~~g~~~lE-a~a~G~PvI~~~~~~ 410 (488)
..+..+-..+|++=.+|.. .-...+++ +...|+||+.++...
T Consensus 113 ~~~~~l~~~vd~~kIgs~~-~~n~~ll~~~a~~~kPV~lk~G~~ 155 (276)
T 1vs1_A 113 RHVETVSRYADMLQIGARN-MQNFPLLREVGRSGKPVLLKRGFG 155 (276)
T ss_dssp GGHHHHHHHCSEEEECGGG-TTCHHHHHHHHHHTCCEEEECCTT
T ss_pred HHHHHHHHhCCeEEECccc-ccCHHHHHHHHccCCeEEEcCCCC
Confidence 4444444448988777732 22334454 555799999987653
No 253
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=28.85 E-value=2.7e+02 Score=24.02 Aligned_cols=36 Identities=14% Similarity=0.008 Sum_probs=24.1
Q ss_pred cEEEEeccCCCCCCCce-ehHHHHHHHHHHhCCCeeEEEEeCCCC
Q psy15555 53 KTVAFFHPYCNAGGGGE-RVLWTAVLALHQKYPDYKIYIYTGDVD 96 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e-~~~~~l~~~L~~~~~~~~v~~~~~~~~ 96 (488)
|||++..++ |.. .-+..|+++|++.+ +|+++....+
T Consensus 2 M~ILlTNDD-----Gi~apGi~aL~~~l~~~g---~V~VVAP~~~ 38 (251)
T 2phj_A 2 PTFLLVNDD-----GYFSPGINALREALKSLG---RVVVVAPDRN 38 (251)
T ss_dssp CEEEEECSS-----CTTCHHHHHHHHHHTTTS---EEEEEEESSC
T ss_pred CEEEEECCC-----CCCCHHHHHHHHHHHhcC---CEEEEecCCC
Confidence 899987766 333 45667888888863 6666665533
No 254
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=28.83 E-value=1.5e+02 Score=25.24 Aligned_cols=54 Identities=9% Similarity=0.030 Sum_probs=33.2
Q ss_pred CcEEEecCCC--hHHHHHHHHhCc-EEEEcCCCCcCCcc-H-HHHHHcCCcEEEeCCCC
Q psy15555 357 NNVEFKVNLP--YEDMKKEFSEGL-IGLHAMWNEHFGIG-I-VECMAAGLIMIAHKSGG 410 (488)
Q Consensus 357 ~~v~~~g~~~--~~el~~~~~~ad-~~v~~s~~e~~g~~-~-lEa~a~G~PvI~~~~~~ 410 (488)
++|++.|..| .++..+.++.|| +++.++....+|.. + .++-..|.|+|.-|...
T Consensus 146 P~vv~FGE~p~~~~~a~~~~~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~~~ 204 (235)
T 1s5p_A 146 PHVVWFGEMPLGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEP 204 (235)
T ss_dssp EEECCTTSCCSSHHHHHHHHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSS
T ss_pred CcEEEeCCCHHHHHHHHHHHhcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEECCC
Confidence 4566665542 255667788899 44555544444443 3 34556799999987654
No 255
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=28.72 E-value=2.3e+02 Score=22.83 Aligned_cols=77 Identities=12% Similarity=-0.009 Sum_probs=42.8
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC-CChHHHHHHH-----HhCcEEEEcCCCCcCCccHHHHHHcCC
Q psy15555 328 LIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN-LPYEDMKKEF-----SEGLIGLHAMWNEHFGIGIVECMAAGL 401 (488)
Q Consensus 328 l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-~~~~el~~~~-----~~ad~~v~~s~~e~~g~~~lEa~a~G~ 401 (488)
.+|.|+..+ ....++..+.++++|++..+...+- ...+++.++. +.++++|.....++ .+.-+=|...-+
T Consensus 11 ~IimgS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa-~LpgvvA~~t~~ 86 (174)
T 3lp6_A 11 GVIMGSDSD---WPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAA-HLPGMVAAATPL 86 (174)
T ss_dssp EEEESCGGG---HHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSC-CHHHHHHHHCSS
T ss_pred EEEECcHHh---HHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchh-hhHHHHHhccCC
Confidence 345554432 3555666666677776655555542 2345555554 44676665543322 344455666778
Q ss_pred cEEEeCC
Q psy15555 402 IMIAHKS 408 (488)
Q Consensus 402 PvI~~~~ 408 (488)
|||.-+.
T Consensus 87 PVIgVP~ 93 (174)
T 3lp6_A 87 PVIGVPV 93 (174)
T ss_dssp CEEEEEE
T ss_pred CEEEeeC
Confidence 8887554
No 256
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Probab=28.72 E-value=1.1e+02 Score=28.19 Aligned_cols=79 Identities=13% Similarity=0.015 Sum_probs=47.9
Q ss_pred HHHHHHHhCcEEEEc--CCCCcC-CccHHHHHHcCCcEEEeCCCCCccceeccCCCcccccee-c---CCHHHHHHHHHH
Q psy15555 369 DMKKEFSEGLIGLHA--MWNEHF-GIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFL-A---CDEVEYAQTIKL 441 (488)
Q Consensus 369 el~~~~~~ad~~v~~--s~~e~~-g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g~~-~---~~~~~l~~~i~~ 441 (488)
....+++.....+.- |..+.+ -=++.+|+.+|+-.|....+... +++-. ..++ + +++++|++.|..
T Consensus 224 ~~~~~l~~YKFyLafENs~c~dYvTEK~~~al~~g~VPI~~G~~~~~-~~~Pp------~SfI~~~dF~s~~~La~yL~~ 296 (371)
T 2nzw_A 224 NKNEFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVA-KDFNP------KSFVNVHDFKNFDEAIDYIKY 296 (371)
T ss_dssp CHHHHHTTEEEEEEECSSCCTTCCCTHHHHHHHTTCEEEEESCTTGG-GTSCG------GGSEEGGGSSSHHHHHHHHHH
T ss_pred cHHHHHhcCcEEEEEeccCCCCcccHHHHHHHhCCeEEEEECCCchh-hhCCC------CceEEcccCCCHHHHHHHHHH
Confidence 445566666644431 222222 23688999999655554333332 44432 2443 3 389999999999
Q ss_pred HHccCHHHHHHHHH
Q psy15555 442 ILHLSQDTKTRISQ 455 (488)
Q Consensus 442 ll~~~~~~~~~~~~ 455 (488)
|-+ |++++.+.-.
T Consensus 297 L~~-n~~~Y~~y~~ 309 (371)
T 2nzw_A 297 LHT-HKNAYLDMLY 309 (371)
T ss_dssp HHT-CHHHHHHHHH
T ss_pred Hhc-CHHHHHHHHh
Confidence 998 8888876653
No 257
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=28.57 E-value=1e+02 Score=27.71 Aligned_cols=67 Identities=9% Similarity=0.018 Sum_probs=40.1
Q ss_pred CceEEEEEe-cCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHH--hCcEEEEcCCCCcCCccHHHHHHcC
Q psy15555 324 DNLKLIFIG-STRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS--EGLIGLHAMWNEHFGIGIVECMAAG 400 (488)
Q Consensus 324 ~~~~l~ivG-~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~--~ad~~v~~s~~e~~g~~~lEa~a~G 400 (488)
+++.++-+- ..+ +..++.+++.+. . . .++.++++ ..|+++..+....-.-.+.+++..|
T Consensus 26 ~~~~l~av~d~~~--------~~~~~~~~~~~~----~---~---~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~g 87 (331)
T 4hkt_A 26 ADARLVAVADAFP--------AAAEAIAGAYGC----E---V---RTIDAIEAAADIDAVVICTPTDTHADLIERFARAG 87 (331)
T ss_dssp TTEEEEEEECSSH--------HHHHHHHHHTTC----E---E---CCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCH--------HHHHHHHHHhCC----C---c---CCHHHHhcCCCCCEEEEeCCchhHHHHHHHHHHcC
Confidence 677776433 332 445556666553 2 1 34555666 7897666553332233567899999
Q ss_pred CcEEEeCC
Q psy15555 401 LIMIAHKS 408 (488)
Q Consensus 401 ~PvI~~~~ 408 (488)
++|++-..
T Consensus 88 k~v~~EKP 95 (331)
T 4hkt_A 88 KAIFCEKP 95 (331)
T ss_dssp CEEEECSC
T ss_pred CcEEEecC
Confidence 99998654
No 258
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=28.47 E-value=85 Score=28.54 Aligned_cols=71 Identities=8% Similarity=0.177 Sum_probs=41.1
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcCCCCcCCccHHHHHHcCC
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAMWNEHFGIGIVECMAAGL 401 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s~~e~~g~~~lEa~a~G~ 401 (488)
+++.++-+-+.. . +..++.++++++. +... +++.+++.. .|+++..+....-.-.+.+++..|+
T Consensus 26 ~~~~l~av~d~~----~---~~~~~~~~~~g~~--~~~~-----~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~Gk 91 (344)
T 3mz0_A 26 SGAEIVAVTDVN----Q---EAAQKVVEQYQLN--ATVY-----PNDDSLLADENVDAVLVTSWGPAHESSVLKAIKAQK 91 (344)
T ss_dssp SSEEEEEEECSS----H---HHHHHHHHHTTCC--CEEE-----SSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTC
T ss_pred CCcEEEEEEcCC----H---HHHHHHHHHhCCC--Ceee-----CCHHHHhcCCCCCEEEECCCchhHHHHHHHHHHCCC
Confidence 677776443321 1 4556666666642 2222 344555665 8876665533322334678999999
Q ss_pred cEEEeCC
Q psy15555 402 IMIAHKS 408 (488)
Q Consensus 402 PvI~~~~ 408 (488)
+|++-..
T Consensus 92 ~vl~EKP 98 (344)
T 3mz0_A 92 YVFCEKP 98 (344)
T ss_dssp EEEECSC
T ss_pred cEEEcCC
Confidence 9998544
No 259
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=28.41 E-value=2.5e+02 Score=26.83 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=25.7
Q ss_pred ccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 52 ~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
+++|+++.. +..|--.-+..+++.|.++ |++|+++++.
T Consensus 8 ~~~vl~~p~---p~~GHi~P~l~La~~L~~r--G~~VT~v~t~ 45 (482)
T 2pq6_A 8 KPHVVMIPY---PVQGHINPLFKLAKLLHLR--GFHITFVNTE 45 (482)
T ss_dssp CCEEEEECC---SSHHHHHHHHHHHHHHHHT--TCEEEEEEEH
T ss_pred CCEEEEecC---ccchhHHHHHHHHHHHHhC--CCeEEEEeCC
Confidence 368887642 2234667889999999998 5566555544
No 260
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=28.10 E-value=3.5e+02 Score=24.76 Aligned_cols=100 Identities=14% Similarity=-0.032 Sum_probs=48.1
Q ss_pred CChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEE
Q psy15555 302 KDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGL 381 (488)
Q Consensus 302 k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v 381 (488)
++...+++.+.+..+.. +..++.++-...........+.+.+.+.+.|..-.+.-+...+..++..-+..+|.++
T Consensus 233 ~~~~~~l~~~~~~~~~~-----~~~~i~i~y~S~~GnT~~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii 307 (398)
T 1ycg_A 233 KDPGRIIEAYARWAEGQ-----GKAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVL 307 (398)
T ss_dssp SCHHHHHHHHHHHHHTC-----CCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEE
T ss_pred CCHHHHHHHHHHHhccC-----CcCeEEEEEECCccHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHCCEEE
Confidence 35666777766655442 1234444333333322333344555554444321222233334466667778999655
Q ss_pred EcC--CCCcCCccH---HHHHH----cCCcEEEe
Q psy15555 382 HAM--WNEHFGIGI---VECMA----AGLIMIAH 406 (488)
Q Consensus 382 ~~s--~~e~~g~~~---lEa~a----~G~PvI~~ 406 (488)
.++ +..+.+-.+ ++.+. .|+++...
T Consensus 308 ~g~p~y~~~~~~~~~~~l~~l~~~~~~~k~~~~~ 341 (398)
T 1ycg_A 308 VGSPTINNDILPVVSPLLDDLVGLRPKNKVGLAF 341 (398)
T ss_dssp EECCCBTTBCCGGGHHHHHHHHHHCCSSCEEEEE
T ss_pred EECCccCccchHHHHHHHHHHhccccCCCEEEEE
Confidence 544 333333333 34332 57777653
No 261
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=27.90 E-value=85 Score=22.61 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=31.2
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCc
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGL 378 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad 378 (488)
.++++|+...-+ +.....+..+++..+++ +.+.+ +..||........
T Consensus 34 ka~lViiA~D~~---~~~~~~i~~~c~~~~ip--~~~~~--s~~eLG~a~Gk~~ 80 (101)
T 3on1_A 34 QVTLVILSSDAG---IHTKKKLLDKCGSYQIP--VKVVG--NRQMLGRAIGKHE 80 (101)
T ss_dssp CCSEEEEETTSC---HHHHHHHHHHHHHHTCC--EEEES--CHHHHHHHTTSSC
T ss_pred CCcEEEEeCCCC---HHHHHHHHHHHHHcCCC--EEEeC--CHHHHHHHhCCcC
Confidence 566666554322 24567888888888875 55554 5589998888754
No 262
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=27.86 E-value=2.2e+02 Score=22.94 Aligned_cols=67 Identities=6% Similarity=-0.102 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCCCCcEEEecC-CChHHHHHHHH-----hCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCC
Q psy15555 341 VCVKDMQDLCKHLSLENNVEFKVN-LPYEDMKKEFS-----EGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 341 ~~~~~l~~~~~~~~l~~~v~~~g~-~~~~el~~~~~-----~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~ 408 (488)
...++..+.++++|++..+...+- ...+++.++.+ .++++|.....++ .+.-+=|...-+|||.-+.
T Consensus 26 ~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa-~LpgvvA~~t~~PVIgVP~ 98 (174)
T 3kuu_A 26 ATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAA-HLPGMLAAKTLVPVLGVPV 98 (174)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSC-CHHHHHHHTCSSCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhh-hhHHHHHhccCCCEEEeeC
Confidence 444555555555555544444432 23345555543 2455554432221 3334445555677776443
No 263
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Probab=27.76 E-value=1.6e+02 Score=28.76 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=29.5
Q ss_pred HHHHHHHH--hCcEEEEcCC-CCcCCccHHHHHHc--CCcEEE
Q psy15555 368 EDMKKEFS--EGLIGLHAMW-NEHFGIGIVECMAA--GLIMIA 405 (488)
Q Consensus 368 ~el~~~~~--~ad~~v~~s~-~e~~g~~~lEa~a~--G~PvI~ 405 (488)
..+.+.+. .+|++|+.|. ...|.--++++|+. -.|||.
T Consensus 355 ~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIF 397 (564)
T 1pj3_A 355 DTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIF 397 (564)
T ss_dssp SSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEE
T ss_pred CCHHHHHhhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 35888998 5999999995 56677788999984 566665
No 264
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=27.69 E-value=3.2e+02 Score=24.70 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=26.0
Q ss_pred HHHHHHHhCcEEEE-cC-CCCcC---CccHHHHHHcCCcEEEeCCCCC
Q psy15555 369 DMKKEFSEGLIGLH-AM-WNEHF---GIGIVECMAAGLIMIAHKSGGP 411 (488)
Q Consensus 369 el~~~~~~ad~~v~-~s-~~e~~---g~~~lEa~a~G~PvI~~~~~~~ 411 (488)
++.++++.||+++. .. ..++. +-..++.|--|.-+|-+.-|+.
T Consensus 187 ~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~i 234 (334)
T 3kb6_A 187 SLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKV 234 (334)
T ss_dssp CHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGG
T ss_pred CHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCcccc
Confidence 45678999995543 33 33443 3456777766766666555543
No 265
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=27.44 E-value=2.2e+02 Score=25.81 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=28.5
Q ss_pred ccEEEEeccCCCCCC-CceehHHHHHHHHHHhCCCeeEEEEeCCCCC
Q psy15555 52 LKTVAFFHPYCNAGG-GGERVLWTAVLALHQKYPDYKIYIYTGDVDA 97 (488)
Q Consensus 52 ~~rI~~~~~~~~~~g-G~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~ 97 (488)
.++|++++. .+| |=...+.+++..|++. +.+|+++..++..
T Consensus 15 ~~~i~~~sg---kGGvGKTt~a~~lA~~la~~--g~~vllid~D~~~ 56 (334)
T 3iqw_A 15 SLRWIFVGG---KGGVGKTTTSCSLAIQLAKV--RRSVLLLSTDPAH 56 (334)
T ss_dssp TCCEEEEEC---STTSSHHHHHHHHHHHHTTS--SSCEEEEECCSSC
T ss_pred CeEEEEEeC---CCCccHHHHHHHHHHHHHhC--CCcEEEEECCCCC
Confidence 467877542 233 3447788899999987 6788888887544
No 266
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=27.43 E-value=3.7e+02 Score=24.73 Aligned_cols=36 Identities=14% Similarity=0.005 Sum_probs=19.4
Q ss_pred HHHHhhhcCCcEEEecCCccchhhhh--hhhCCCeeEE
Q psy15555 151 GVEALLSFQPDIYIDTMGYAFTYPLF--SYIGGSKVAC 186 (488)
Q Consensus 151 ~~~~l~~~~pDiii~~~~~~~~~~~~--~~~~~~~~v~ 186 (488)
...++...++|+|+...+.......+ ....|+++++
T Consensus 56 ~~ell~~~~vD~V~i~tp~~~H~~~~~~al~aGk~Vl~ 93 (387)
T 3moi_A 56 LAEMMQHVQMDAVYIASPHQFHCEHVVQASEQGLHIIV 93 (387)
T ss_dssp HHHHHHHSCCSEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred HHHHHcCCCCCEEEEcCCcHHHHHHHHHHHHCCCceee
Confidence 34566677899776554333222222 2356776655
No 267
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=26.65 E-value=1.5e+02 Score=22.29 Aligned_cols=62 Identities=8% Similarity=0.065 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCCC---c-EEEecCCChHHHHHHHH--hCcEEEEcCCCCcCC----ccHHHHH--HcCCcEEEe
Q psy15555 344 KDMQDLCKHLSLEN---N-VEFKVNLPYEDMKKEFS--EGLIGLHAMWNEHFG----IGIVECM--AAGLIMIAH 406 (488)
Q Consensus 344 ~~l~~~~~~~~l~~---~-v~~~g~~~~~el~~~~~--~ad~~v~~s~~e~~g----~~~lEa~--a~G~PvI~~ 406 (488)
+.+++.+++.+.+. . ....|. +.+++.++-. .+|++|+++...++. -++.|.+ .+.|||+.-
T Consensus 69 ~~l~~~~~~~~~~~~~v~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 69 TQLKEIAKKFSIPEDRMHFHVAEGS-PKDKILALAKSLPADLVIIASHRPDITTYLLGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp HHHHHHHTTSCCCGGGEEEEEEESC-HHHHHHHHHHHTTCSEEEEESSCTTCCSCSSCHHHHHHHHHCSSEEEEE
T ss_pred HHHHHHHHHcCCCCCceEEEEEecC-hHHHHHHHHHHhCCCEEEEeCCCCCCeeeeeccHHHHHHHhCCCCEEEe
Confidence 44555666666542 1 223353 5677888777 699877777532221 1334433 458888763
No 268
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=26.43 E-value=1.6e+02 Score=23.27 Aligned_cols=37 Identities=14% Similarity=-0.059 Sum_probs=22.3
Q ss_pred HHHHhCcEEEEcC-CCCcCCccHHH---HHHcCCcEEEeCC
Q psy15555 372 KEFSEGLIGLHAM-WNEHFGIGIVE---CMAAGLIMIAHKS 408 (488)
Q Consensus 372 ~~~~~ad~~v~~s-~~e~~g~~~lE---a~a~G~PvI~~~~ 408 (488)
+.+..||++|.-- ..+.=+-+..| |.+.|+||++-..
T Consensus 74 ~~i~~aD~vvA~ldg~~~D~GT~~EiGyA~A~gkPVv~~~~ 114 (157)
T 1f8y_A 74 NGIKTNDIMLGVYIPDEEDVGLGMELGYALSQGKYVLLVIP 114 (157)
T ss_dssp HHHHTSSEEEEECCGGGCCHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHhCCEEEEEcCCCCCCccHHHHHHHHHHCCCeEEEEEc
Confidence 4568999765432 11111224454 8899999999643
No 269
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=26.34 E-value=56 Score=30.30 Aligned_cols=101 Identities=11% Similarity=0.068 Sum_probs=51.9
Q ss_pred CCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCCh
Q psy15555 288 GPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPY 367 (488)
Q Consensus 288 ~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 367 (488)
++..+..+|.=.--+ .-+.++..+..... ..++++++-+-+.. . +..++.+++++.+ . ..
T Consensus 24 kkirvgiIG~G~ig~---~H~~a~~~~~~~~~--~~~~~~lvav~d~~-~------~~a~~~a~~~g~~-~--~y----- 83 (393)
T 4fb5_A 24 KPLGIGLIGTGYMGK---CHALAWNAVKTVFG--DVERPRLVHLAEAN-A------GLAEARAGEFGFE-K--AT----- 83 (393)
T ss_dssp CCCEEEEECCSHHHH---HHHHHHTTHHHHHC--SSCCCEEEEEECC---------TTHHHHHHHHTCS-E--EE-----
T ss_pred CCccEEEEcCCHHHH---HHHHHHHhhhhhhc--cCCCcEEEEEECCC-H------HHHHHHHHHhCCC-e--ec-----
Confidence 356677777411111 22444444432210 01566766554432 1 3355666677653 1 11
Q ss_pred HHHHHHHHh--CcEEEEcCCCCcCCccHHHHHHcCCcEEEeCC
Q psy15555 368 EDMKKEFSE--GLIGLHAMWNEHFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 368 ~el~~~~~~--ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~ 408 (488)
.++.++++. .|+++..+....-.-...+|+.+|++|++-..
T Consensus 84 ~d~~ell~~~~iDaV~IatP~~~H~~~a~~al~aGkhVl~EKP 126 (393)
T 4fb5_A 84 ADWRALIADPEVDVVSVTTPNQFHAEMAIAALEAGKHVWCEKP 126 (393)
T ss_dssp SCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred CCHHHHhcCCCCcEEEECCChHHHHHHHHHHHhcCCeEEEccC
Confidence 344455554 67666655333223357899999999999554
No 270
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=26.19 E-value=2.2e+02 Score=21.84 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCCCcEE-EecCCChHHHHHHHH--hCcEEEEcCCCCc------CCccHHHHH--HcCCcEEEeCC
Q psy15555 344 KDMQDLCKHLSLENNVE-FKVNLPYEDMKKEFS--EGLIGLHAMWNEH------FGIGIVECM--AAGLIMIAHKS 408 (488)
Q Consensus 344 ~~l~~~~~~~~l~~~v~-~~g~~~~~el~~~~~--~ad~~v~~s~~e~------~g~~~lEa~--a~G~PvI~~~~ 408 (488)
+++.+.++..|++-... ..|. +.+++.++-. .+|++|+++...+ +| ++.+.+ .+.|||+.-+.
T Consensus 86 ~~~~~~~~~~g~~~~~~v~~G~-~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~G-Sv~~~vl~~~~~pVlvv~~ 159 (162)
T 1mjh_A 86 ENIKKELEDVGFKVKDIIVVGI-PHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLG-SVTENVIKKSNKPVLVVKR 159 (162)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEC-HHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSC-HHHHHHHHHCCSCEEEECC
T ss_pred HHHHHHHHHcCCceEEEEcCCC-HHHHHHHHHHHcCCCEEEEcCCCCCCccceEec-chHHHHHHhCCCCEEEEeC
Confidence 34444444445432222 2343 5567777776 7887777664322 22 344433 36899998754
No 271
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=26.07 E-value=2.5e+02 Score=22.30 Aligned_cols=77 Identities=10% Similarity=0.046 Sum_probs=42.9
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC-CChHHHHHHHH------hCcEEEEcCCCCcCCccHHHHHHcC
Q psy15555 328 LIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN-LPYEDMKKEFS------EGLIGLHAMWNEHFGIGIVECMAAG 400 (488)
Q Consensus 328 l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-~~~~el~~~~~------~ad~~v~~s~~e~~g~~~lEa~a~G 400 (488)
.+|.|+..+ ....++..+.++++|++..+...+- ...+++.++.+ .++++|.....++ .+.-+=|...-
T Consensus 6 ~Iimgs~SD---~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa-~LpgvvA~~t~ 81 (159)
T 3rg8_A 6 IILMGSSSD---MGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSN-ALSGFVDGFVK 81 (159)
T ss_dssp EEEESSGGG---HHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSC-CHHHHHHHHSS
T ss_pred EEEECcHHH---HHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchh-hhHHHHHhccC
Confidence 345555432 3556666677777776655555442 24455555543 2566666543332 34445556677
Q ss_pred CcEEEeCC
Q psy15555 401 LIMIAHKS 408 (488)
Q Consensus 401 ~PvI~~~~ 408 (488)
+|||.-+.
T Consensus 82 ~PVIgVP~ 89 (159)
T 3rg8_A 82 GATIACPP 89 (159)
T ss_dssp SCEEECCC
T ss_pred CCEEEeeC
Confidence 88887654
No 272
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=26.03 E-value=2.5e+02 Score=22.45 Aligned_cols=77 Identities=9% Similarity=-0.059 Sum_probs=42.9
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC-CChHHHHHHHH-----hCcEEEEcCCCCcCCccHHHHHHcCC
Q psy15555 328 LIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN-LPYEDMKKEFS-----EGLIGLHAMWNEHFGIGIVECMAAGL 401 (488)
Q Consensus 328 l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-~~~~el~~~~~-----~ad~~v~~s~~e~~g~~~lEa~a~G~ 401 (488)
.+|.|+..+ ....++..+.++++|++..+...+- ...+++.++.+ .++++|.....++ .+.-+=|...-+
T Consensus 10 ~IimgS~SD---~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa-~LpgvvA~~t~~ 85 (169)
T 3trh_A 10 AILMGSDSD---LSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAA-HLAGTIAAHTLK 85 (169)
T ss_dssp EEEESCGGG---HHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSC-CHHHHHHHTCSS
T ss_pred EEEECcHHh---HHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhh-hhHHHHHhcCCC
Confidence 445555432 3556666777777777655555543 24456666543 2566665443322 344455566678
Q ss_pred cEEEeCC
Q psy15555 402 IMIAHKS 408 (488)
Q Consensus 402 PvI~~~~ 408 (488)
|||.-+.
T Consensus 86 PVIgVP~ 92 (169)
T 3trh_A 86 PVIGVPM 92 (169)
T ss_dssp CEEEEEC
T ss_pred CEEEeec
Confidence 8887554
No 273
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=26.02 E-value=1.5e+02 Score=26.69 Aligned_cols=39 Identities=5% Similarity=0.075 Sum_probs=19.8
Q ss_pred HHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC
Q psy15555 344 KDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM 384 (488)
Q Consensus 344 ~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s 384 (488)
..+++.++++|++ |.-...+..+++.+.++. .|++|..+
T Consensus 48 ~~v~~~A~~~gIp--v~~~~~~~~~~~~~~l~~~~~Dliv~~~ 88 (314)
T 3tqq_A 48 SPVKEIARQNEIP--IIQPFSLRDEVEQEKLIAMNADVMVVVA 88 (314)
T ss_dssp CHHHHHHHHTTCC--EECCSCSSSHHHHHHHHTTCCSEEEEES
T ss_pred CHHHHHHHHcCCC--EECcccCCCHHHHHHHHhcCCCEEEEcC
Confidence 3466777777765 322233333455555543 34544443
No 274
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=25.91 E-value=3.4e+02 Score=23.96 Aligned_cols=101 Identities=11% Similarity=0.172 Sum_probs=56.8
Q ss_pred CChHHHHHHHHHhHHhhhhhccCceEEEEEe------cCCC----CCc-HHHHHHHHHHHHhcCCCCcEEEecCCChHHH
Q psy15555 302 KDHPLQLRAMYQLRQIISEELWDNLKLIFIG------STRN----EED-EVCVKDMQDLCKHLSLENNVEFKVNLPYEDM 370 (488)
Q Consensus 302 k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG------~~~~----~~~-~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el 370 (488)
++.+.+++..+++++.... -.+..++-+ +... .-. ++-.+.+++.+++.|++---.. .+...+
T Consensus 28 e~~~~~~e~A~~lk~~~~~---~~~~~v~k~~f~KapRTs~~sf~Glg~~~GL~~L~~~~~e~Glp~~tev---~d~~~v 101 (288)
T 3tml_A 28 ESEQMTIDTAGRLKEICEK---LNVPFIYKSSYDKANRSSGKSFRGLGMDEGLRILSEVKRQLGLPVLTDV---HSIDEI 101 (288)
T ss_dssp CCHHHHHHHHHHHHHHHHH---HTCCEEEECBC--------------CHHHHHHHHHHHHHHHCCCEEEEC---CSGGGH
T ss_pred CCHHHHHHHHHHHHHHHHH---cCCCEEEecccccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEEEEe---CCHHHH
Confidence 4567777777777654210 123333432 1110 001 3555778888889998622222 233455
Q ss_pred HHHHHhCcEEEEcCC-CCcCCccHHHHHHcCCcEEEeCCC
Q psy15555 371 KKEFSEGLIGLHAMW-NEHFGIGIVECMAAGLIMIAHKSG 409 (488)
Q Consensus 371 ~~~~~~ad~~v~~s~-~e~~g~~~lEa~a~G~PvI~~~~~ 409 (488)
..+-..+|++-.+|. ...+++ +-|+...|+||+.++..
T Consensus 102 ~~l~~~vd~lkIgA~~~~n~~L-Lr~~a~~gkPVilK~G~ 140 (288)
T 3tml_A 102 EQVASVVDVLQTPAFLCRQTDF-IHACARSGKPVNIKKGQ 140 (288)
T ss_dssp HHHHHHCSEEEECGGGTTCHHH-HHHHHTSSSCEEEECCT
T ss_pred HHHHHhCCEEEECcccccCHHH-HHHHHccCCcEEEeCCC
Confidence 444455998877773 344442 55777889999998764
No 275
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=25.80 E-value=2.9e+02 Score=25.28 Aligned_cols=62 Identities=11% Similarity=-0.015 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh-CcEEEEcCCCCcCCccHHHHHH-cCCcEEEeCC
Q psy15555 343 VKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE-GLIGLHAMWNEHFGIGIVECMA-AGLIMIAHKS 408 (488)
Q Consensus 343 ~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~-ad~~v~~s~~e~~g~~~lEa~a-~G~PvI~~~~ 408 (488)
..+|.+.+++.|+. .+....+.+.+.-+-.. .|++=.+|. +..-..++++++ .|+|||.+.-
T Consensus 80 ~~~L~~~~~~~Gi~---~~st~fD~~svd~l~~~~v~~~KI~S~-~~~N~pLL~~va~~gKPviLstG 143 (350)
T 3g8r_A 80 MQKLVAEMKANGFK---AICTPFDEESVDLIEAHGIEIIKIASC-SFTDWPLLERIARSDKPVVASTA 143 (350)
T ss_dssp HHHHHHHHHHTTCE---EEEEECSHHHHHHHHHTTCCEEEECSS-STTCHHHHHHHHTSCSCEEEECT
T ss_pred HHHHHHHHHHcCCc---EEeccCCHHHHHHHHHcCCCEEEECcc-cccCHHHHHHHHhhCCcEEEECC
Confidence 35566666666542 12222233333333332 455544442 222334554443 5666666544
No 276
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=25.67 E-value=63 Score=25.91 Aligned_cols=35 Identities=9% Similarity=-0.138 Sum_probs=23.0
Q ss_pred HHHHhCcEEEEcCCCCcCCccHHH---HHHcCCcEEEeC
Q psy15555 372 KEFSEGLIGLHAMWNEHFGIGIVE---CMAAGLIMIAHK 407 (488)
Q Consensus 372 ~~~~~ad~~v~~s~~e~~g~~~lE---a~a~G~PvI~~~ 407 (488)
+.+..||++|.--. +.-.-+.+| |.+.|+|||+..
T Consensus 73 ~~i~~aD~vva~~~-~~d~Gt~~EiGyA~algKPVi~l~ 110 (165)
T 2khz_A 73 NWLQQADVVVAEVT-QPSLGVGYELGRAVALGKPILCLF 110 (165)
T ss_dssp HHHHHCSEEEEECS-SCCHHHHHHHHHHHHTCSSEEEEE
T ss_pred HHHHhCCEEEEECC-CCCCCHHHHHHHHHHCCCEEEEEE
Confidence 68999996654222 222334555 788899999953
No 277
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=25.27 E-value=1.7e+02 Score=20.06 Aligned_cols=46 Identities=9% Similarity=0.199 Sum_probs=33.0
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE 376 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ 376 (488)
..++++|+...-+ ++....+..++++.+++ +.+.+ +..||..+...
T Consensus 26 gkaklViiA~D~~---~~~~~~i~~lc~~~~Ip--~~~v~--sk~eLG~a~Gk 71 (82)
T 3v7e_A 26 GSVKEVVVAKDAD---PILTSSVVSLAEDQGIS--VSMVE--SMKKLGKACGI 71 (82)
T ss_dssp TCEEEEEEETTSC---HHHHHHHHHHHHHHTCC--EEEES--CHHHHHHHHTC
T ss_pred CCeeEEEEeCCCC---HHHHHHHHHHHHHcCCC--EEEEC--CHHHHHHHhCC
Confidence 3678887775532 37778899999999876 66666 44888877654
No 278
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=25.25 E-value=3.2e+02 Score=23.31 Aligned_cols=108 Identities=14% Similarity=0.145 Sum_probs=63.4
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh---CcEEEEcC-CCCcCCccHHHHHHc
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE---GLIGLHAM-WNEHFGIGIVECMAA 399 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~---ad~~v~~s-~~e~~g~~~lEa~a~ 399 (488)
...++.++-+.+ ...+.+....+..+. .|.... +.++..+.+.. .|+++.-- ..+.-|..+++.+..
T Consensus 123 ~~~~ILivDD~~-----~~~~~l~~~L~~~~~--~v~~a~--~~~eal~~l~~~~~~dlvllD~~mP~~dG~~l~~~lr~ 193 (259)
T 3luf_A 123 QQIEVLVVDDSR-----TSRHRTMAQLRKQLL--QVHEAS--HAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRE 193 (259)
T ss_dssp TTCEEEEECSCH-----HHHHHHHHHHHTTTC--EEEEES--SHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHH
T ss_pred CCCcEEEEeCCH-----HHHHHHHHHHHHcCc--EEEEeC--CHHHHHHHHhcCCCCCEEEEcCCCCCCCHHHHHHHHHh
Confidence 467888888764 444556666665542 344333 33676666654 36555543 233345666665542
Q ss_pred -----CCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 -----GLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 -----G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.+|||+........ +.++.+ ..+++.+ +.+++...+.+++.
T Consensus 194 ~~~~~~~~ii~~s~~~~~~~~~~a~~~G----a~~yl~KP~~~~~L~~~i~~~l~ 244 (259)
T 3luf_A 194 RYSKQQLAIIGISVSDKRGLSARYLKQG----ANDFLNQPFEPEELQCRVSHNLE 244 (259)
T ss_dssp HCCTTTSEEEEEECSSSSSHHHHHHHTT----CSEEEESSCCHHHHHHHHHHHHH
T ss_pred ccCCCCCeEEEEEccCCHHHHHHHHhcC----hhheEcCCCCHHHHHHHHHHHHH
Confidence 57888533222211 223444 6778876 99999999988876
No 279
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=25.20 E-value=2e+02 Score=23.81 Aligned_cols=108 Identities=5% Similarity=-0.060 Sum_probs=58.6
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCC--ChHHHHHHH--HhCcEEEEcC-CCCcCCccHHHHHH-
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNL--PYEDMKKEF--SEGLIGLHAM-WNEHFGIGIVECMA- 398 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~el~~~~--~~ad~~v~~s-~~e~~g~~~lEa~a- 398 (488)
..++.|+.+.+ ...+.++...+..+ .+...+.. ..+++..++ ...|+++.-- ..+.-|..+++.+.
T Consensus 7 ~~~IlivdD~~-----~~~~~l~~~L~~~~---~~~v~~~~~~~~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~ 78 (225)
T 3klo_A 7 KLNVRMLSDVC-----MQSRLLKEALESKL---PLALEITPFSELWLEENKPESRSIQMLVIDYSRISDDVLTDYSSFKH 78 (225)
T ss_dssp SEEEEEESCCS-----HHHHHHHHHHHHHS---SEEEEEECGGGHHHHTTCSGGGGCCEEEEEGGGCCHHHHHHHHHHHH
T ss_pred ceEEEEEcCcH-----HHHHHHHHHHhhCC---CceEEEEeCCcHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 56778888765 55566777766431 12222211 112233322 2357655433 33444566665543
Q ss_pred ---cCCcEEEeCCCCCccc---eeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 399 ---AGLIMIAHKSGGPKMD---IVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 399 ---~G~PvI~~~~~~~~~e---iv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
..+|||.-........ ....+ ..|++.. +++++.++|..++.
T Consensus 79 ~~~~~~~ii~lt~~~~~~~~~~~~~~G----a~~~l~Kp~~~~~L~~~i~~~~~ 128 (225)
T 3klo_A 79 ISCPDAKEVIINCPQDIEHKLLFKWNN----LAGVFYIDDDMDTLIKGMSKILQ 128 (225)
T ss_dssp HHCTTCEEEEEEECTTCCHHHHTTSTT----EEEEEETTCCHHHHHHHHHHHHT
T ss_pred hhCCCCcEEEEECCcchhHHHHHHHhC----CCEEEecCCCHHHHHHHHHHHHC
Confidence 3688777433222112 22233 5677765 89999999999886
No 280
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=25.18 E-value=1.6e+02 Score=24.34 Aligned_cols=101 Identities=8% Similarity=0.094 Sum_probs=53.2
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcCCCCcCCccHHHHHH--c-CCc
Q psy15555 328 LIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAMWNEHFGIGIVECMA--A-GLI 402 (488)
Q Consensus 328 l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s~~e~~g~~~lEa~a--~-G~P 402 (488)
+.++.+.+ ...+.+....+..|. .|..... .++....+.. .|++++| +.-|..+++.+. . .+|
T Consensus 3 ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~~--~~~al~~l~~~~~dlvilp---~~~g~~~~~~lr~~~~~~~ 70 (223)
T 2hqr_A 3 VLLIEKNS-----VLGGEIEKGLNVKGF--MADVTES--LEDGEYLMDIRNYDLVMVS---DKNALSFVSRIKEKHSSIV 70 (223)
T ss_dssp EEEECSCH-----HHHHHHHHHHGGGTC--CEEEESS--HHHHHHHHTTSCCSEEEEC---CTTHHHHHHHHHHHCTTSE
T ss_pred EEEEcCCH-----HHHHHHHHHHHHCCc--EEEEECC--HHHHHHHHhcCCCCEEEeC---CCCHHHHHHHHHhCCCCCc
Confidence 45555443 445666666666554 3443333 3566666554 4555522 233455555443 2 677
Q ss_pred EEEeCCCCCcc---ceeccCCCccccceecC---CHHHHHHHHHHHHc
Q psy15555 403 MIAHKSGGPKM---DIVIEDPETCRNGFLAC---DEVEYAQTIKLILH 444 (488)
Q Consensus 403 vI~~~~~~~~~---eiv~~~~~~~~~g~~~~---~~~~l~~~i~~ll~ 444 (488)
||.-......+ +.+..+ ..+++.. +.+++.+++..++.
T Consensus 71 ii~lt~~~~~~~~~~~~~~G----a~~~l~Kp~~~~~~L~~~i~~~~~ 114 (223)
T 2hqr_A 71 VLVSSDNPTSEEEVHAFEQG----ADDYIAKPYRSIKALVARIEARLR 114 (223)
T ss_dssp EEEEESSCCHHHHHHHHHHT----CSEEEETTCSCTHHHHHHHHHHTS
T ss_pred EEEEECCCCHHHHHHHHHcC----CCEEEECCCCCHHHHHHHHHHHhc
Confidence 77643322211 222333 4566643 67888888888775
No 281
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0
Probab=25.08 E-value=1.5e+02 Score=24.88 Aligned_cols=30 Identities=13% Similarity=0.066 Sum_probs=17.1
Q ss_pred cccEEEEeccCCCCCCCce-ehHHHHHHHHHHh
Q psy15555 51 VLKTVAFFHPYCNAGGGGE-RVLWTAVLALHQK 82 (488)
Q Consensus 51 ~~~rI~~~~~~~~~~gG~e-~~~~~l~~~L~~~ 82 (488)
+.|||++-. +.+.||.. .-.+.++++|.+.
T Consensus 2 ~~m~VLvTG--F~PF~~~~~NPS~~~v~~L~~~ 32 (215)
T 3giu_A 2 NAMHILVTG--FAPFDNQNINPSWEAVTQLEDI 32 (215)
T ss_dssp --CEEEEEE--ECCCTTCSCCHHHHHHHHSCSE
T ss_pred CCcEEEEEe--cCCCCCCCCChHHHHHHHhccc
Confidence 468887632 33445443 6677777777653
No 282
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=25.07 E-value=3.4e+02 Score=23.51 Aligned_cols=55 Identities=15% Similarity=0.079 Sum_probs=32.3
Q ss_pred ccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCC--CcEEEecC
Q psy15555 297 QFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLE--NNVEFKVN 364 (488)
Q Consensus 297 ~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~--~~v~~~g~ 364 (488)
....+.+. +.+++.++.+.. ++...+++... .....+.+.+++.|+. +.|.++|+
T Consensus 176 ~~~~~~~~--~~~~~~~~l~~~-----~~~~ai~~~~d------~~A~g~~~al~~~g~~vP~di~vig~ 232 (301)
T 3miz_A 176 PVGAENNY--VFAAATEMLKQD-----DRPTAIMSGND------EMAIQIYIAAMALGLRIPQDVSIVGF 232 (301)
T ss_dssp STTSCEEC--HHHHHHHHHTST-----TCCSEEEESSH------HHHHHHHHHHHTTTCCHHHHCEEECS
T ss_pred CcCccccH--HHHHHHHHHcCC-----CCCcEEEECCH------HHHHHHHHHHHHcCCCCCCCeeEEEe
Confidence 44444453 124555555544 56677777643 2224556677788875 67888887
No 283
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=24.90 E-value=2.1e+02 Score=21.15 Aligned_cols=62 Identities=11% Similarity=0.073 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCc-----CCccHHH--HHHcCCcEEEe
Q psy15555 344 KDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEH-----FGIGIVE--CMAAGLIMIAH 406 (488)
Q Consensus 344 ~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~-----~g~~~lE--a~a~G~PvI~~ 406 (488)
+++.+.+.+.|++-.......-+.+++.++-..+|++|+++...+ +| ++.| ...+.|||+.-
T Consensus 69 ~~~~~~~~~~g~~~~~~v~~g~~~~~I~~~a~~~dliV~G~~~~~~~~~~~G-s~~~~vl~~~~~pVlvv 137 (138)
T 3idf_A 69 QKFSTFFTEKGINPFVVIKEGEPVEMVLEEAKDYNLLIIGSSENSFLNKIFA-SHQDDFIQKAPIPVLIV 137 (138)
T ss_dssp HHHHHHHHTTTCCCEEEEEESCHHHHHHHHHTTCSEEEEECCTTSTTSSCCC-CTTCHHHHHCSSCEEEE
T ss_pred HHHHHHHHHCCCCeEEEEecCChHHHHHHHHhcCCEEEEeCCCcchHHHHhC-cHHHHHHhcCCCCEEEe
Confidence 444445555566543433332366788888889997777764221 22 2222 23457888763
No 284
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=24.82 E-value=2.5e+02 Score=21.94 Aligned_cols=67 Identities=4% Similarity=-0.135 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCcc---HHHHH----HcCCcEEEeCCCC
Q psy15555 344 KDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIG---IVECM----AAGLIMIAHKSGG 410 (488)
Q Consensus 344 ~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~---~lEa~----a~G~PvI~~~~~~ 410 (488)
+.+.+.+.+.|..-.+.-+...+.+++..-+..+|.++++|..-++... .++.+ ..|+++.+....+
T Consensus 19 ~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~g~~p~~~fl~~l~~~~l~gk~v~~fgs~g 92 (161)
T 3hly_A 19 QAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVLGTPPSQPSEAVATALSTIFAAAHNKQAIGLFDSYG 92 (161)
T ss_dssp HHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEEECCBSSCCHHHHHHHHHHHHHCCTTSEEEEECCCC
T ss_pred HHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEEEcCCcCCchhHHHHHHHHHhhhhCCCEEEEEEcCC
Confidence 4445555555543222222333445666666788855554422222222 34433 3688888755533
No 285
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=24.53 E-value=3.5e+02 Score=23.47 Aligned_cols=103 Identities=11% Similarity=0.022 Sum_probs=61.1
Q ss_pred ccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecC-CCCC-------cHHHHHHHHHHHHhcCCCCcEEEecCCChH
Q psy15555 297 QFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGST-RNEE-------DEVCVKDMQDLCKHLSLENNVEFKVNLPYE 368 (488)
Q Consensus 297 ~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~-~~~~-------~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 368 (488)
........+..++....+++.+ +..+-.+.. |... ..+-.+.+++.+++.|++--.... +..
T Consensus 29 gpc~~~~~e~a~~~a~~l~~~G-------a~~vk~~~fkprts~~~~~g~~~egl~~l~~~~~~~Gl~~~te~~---d~~ 98 (262)
T 1zco_A 29 GPCSIESREQIMKVAEFLAEVG-------IKVLRGGAFKPRTSPYSFQGYGEKALRWMREAADEYGLVTVTEVM---DTR 98 (262)
T ss_dssp ECSBCCCHHHHHHHHHHHHHTT-------CCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECC---CGG
T ss_pred eCCCCCCHHHHHHHHHHHHHcC-------CCEEEEEecccCCCcccccCccHHHHHHHHHHHHHcCCcEEEeeC---CHH
Confidence 4467778888898888888754 233333321 1110 145668889999999975222233 334
Q ss_pred HHHHHHHhCcEEEEcCCCCcCCccHH-HHHHcCCcEEEeCCCC
Q psy15555 369 DMKKEFSEGLIGLHAMWNEHFGIGIV-ECMAAGLIMIAHKSGG 410 (488)
Q Consensus 369 el~~~~~~ad~~v~~s~~e~~g~~~l-Ea~a~G~PvI~~~~~~ 410 (488)
.+..+-..+|++=.+|.. .....++ |....|+||+.++...
T Consensus 99 ~~~~l~~~vd~~kIga~~-~~n~~ll~~~a~~~kPV~lk~G~~ 140 (262)
T 1zco_A 99 HVELVAKYSDILQIGARN-SQNFELLKEVGKVENPVLLKRGMG 140 (262)
T ss_dssp GHHHHHHHCSEEEECGGG-TTCHHHHHHHTTSSSCEEEECCTT
T ss_pred hHHHHHhhCCEEEECccc-ccCHHHHHHHHhcCCcEEEecCCC
Confidence 444444448987777632 2234444 4555799999987643
No 286
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=24.51 E-value=2.9e+02 Score=22.49 Aligned_cols=79 Identities=9% Similarity=0.022 Sum_probs=48.0
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC-CChHHHHHHHHh-----CcEEEEcCCCCcCCccHHHHHHc
Q psy15555 326 LKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN-LPYEDMKKEFSE-----GLIGLHAMWNEHFGIGIVECMAA 399 (488)
Q Consensus 326 ~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-~~~~el~~~~~~-----ad~~v~~s~~e~~g~~~lEa~a~ 399 (488)
.-.+|.|+..+ ....++..+.++++|++-.+...+- ...+++.++.+. ++++|.....++ .+.-+=|...
T Consensus 15 ~V~IimGS~SD---~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa-~LpgvvA~~t 90 (183)
T 1o4v_A 15 RVGIIMGSDSD---LPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAA-HLPGMVASIT 90 (183)
T ss_dssp EEEEEESCGGG---HHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSC-CHHHHHHHHC
T ss_pred eEEEEeccHHH---HHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCccc-ccHHHHHhcc
Confidence 34456665533 3666777777788887765665543 244666666553 567766543322 4455556668
Q ss_pred CCcEEEeCC
Q psy15555 400 GLIMIAHKS 408 (488)
Q Consensus 400 G~PvI~~~~ 408 (488)
-+|||.-+.
T Consensus 91 ~~PVIgVP~ 99 (183)
T 1o4v_A 91 HLPVIGVPV 99 (183)
T ss_dssp SSCEEEEEE
T ss_pred CCCEEEeeC
Confidence 888888655
No 287
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=24.32 E-value=2.3e+02 Score=24.27 Aligned_cols=42 Identities=5% Similarity=-0.054 Sum_probs=25.2
Q ss_pred HHHHHHH-hCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCC
Q psy15555 369 DMKKEFS-EGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGG 410 (488)
Q Consensus 369 el~~~~~-~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~ 410 (488)
++..+.. .+|+.|-.+..+..--.+..++..|+|+|+...+.
T Consensus 37 dl~~~~~~~~DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG~ 79 (245)
T 1p9l_A 37 PLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGF 79 (245)
T ss_dssp CTHHHHHTTCCEEEECSCTTTHHHHHHHHHHTTCEEEECCCCC
T ss_pred CHHHHhccCCcEEEEccChHHHHHHHHHHHHcCCCEEEcCCCC
Confidence 3444444 68887755544443333445677888888865543
No 288
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=24.16 E-value=2.5e+02 Score=22.15 Aligned_cols=78 Identities=13% Similarity=0.017 Sum_probs=48.6
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC-CChHHHHHHHHhC--cEEEEcCCCCcCCccHHHHHHcCCcEE
Q psy15555 328 LIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN-LPYEDMKKEFSEG--LIGLHAMWNEHFGIGIVECMAAGLIMI 404 (488)
Q Consensus 328 l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-~~~~el~~~~~~a--d~~v~~s~~e~~g~~~lEa~a~G~PvI 404 (488)
.++.|+..+ ....++....++++|++..+...+- ...+++.++.+.+ +++|.....++ .+.-+=|...-+|||
T Consensus 3 ~Iimgs~SD---~~v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa-~Lpgvva~~t~~PVI 78 (157)
T 2ywx_A 3 CIIMGSESD---LKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAA-HLPGVVASLTTKPVI 78 (157)
T ss_dssp EEEESSGGG---HHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSC-CHHHHHHTTCSSCEE
T ss_pred EEEEccHHH---HHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchh-hhHHHHHhccCCCEE
Confidence 355665533 3667777888888888766666543 3556777777643 56665543322 344455666788888
Q ss_pred EeCCC
Q psy15555 405 AHKSG 409 (488)
Q Consensus 405 ~~~~~ 409 (488)
.-+.+
T Consensus 79 gVP~~ 83 (157)
T 2ywx_A 79 AVPVD 83 (157)
T ss_dssp EEEEC
T ss_pred EecCC
Confidence 86663
No 289
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=24.04 E-value=4.1e+02 Score=24.10 Aligned_cols=41 Identities=17% Similarity=0.100 Sum_probs=26.8
Q ss_pred HHHHHHHH--hCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCC
Q psy15555 368 EDMKKEFS--EGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 368 ~el~~~~~--~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~ 408 (488)
.++.++++ ..|+++..+....-.-.+.+|+..|++|++-..
T Consensus 55 ~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGkhVl~EKP 97 (359)
T 3e18_A 55 ESYEAVLADEKVDAVLIATPNDSHKELAISALEAGKHVVCEKP 97 (359)
T ss_dssp SCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred CCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCCEEeeCC
Confidence 45556666 678666655332222346789999999998654
No 290
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=23.99 E-value=2.6e+02 Score=22.27 Aligned_cols=35 Identities=14% Similarity=-0.071 Sum_probs=21.8
Q ss_pred HHHHhCcEEEEc--CCCCcCCccHH---HHHHcCCcEEEeC
Q psy15555 372 KEFSEGLIGLHA--MWNEHFGIGIV---ECMAAGLIMIAHK 407 (488)
Q Consensus 372 ~~~~~ad~~v~~--s~~e~~g~~~l---Ea~a~G~PvI~~~ 407 (488)
+.+..||++|.- ..... .-+.. =|.+.|+||++-.
T Consensus 77 ~~i~~aD~vVA~ldg~~~D-~GTa~EiGyA~algKPVv~l~ 116 (167)
T 1s2d_A 77 TGISNATCGVFLYDMDQLD-DGSAFXIGFMRAMHKPVILVP 116 (167)
T ss_dssp HHHHHCSEEEEEEESSSCC-HHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhCCEEEEECCCCCCC-CCceeehhhHhhCCCeEEEEE
Confidence 457899976552 11111 12344 4889999999984
No 291
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=23.93 E-value=3.9e+02 Score=23.88 Aligned_cols=36 Identities=17% Similarity=-0.026 Sum_probs=20.2
Q ss_pred cccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 51 VLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 51 ~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
.++||+++.. | ......++.+.+..++++++..+..
T Consensus 7 ~~~~v~iiG~-----G---~ig~~~~~~l~~~~~~~~~vav~d~ 42 (346)
T 3cea_A 7 KPLRAAIIGL-----G---RLGERHARHLVNKIQGVKLVAACAL 42 (346)
T ss_dssp CCEEEEEECC-----S---TTHHHHHHHHHHTCSSEEEEEEECS
T ss_pred CcceEEEEcC-----C---HHHHHHHHHHHhcCCCcEEEEEecC
Confidence 4589998732 1 2223455666633457887655543
No 292
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=23.83 E-value=3.2e+02 Score=22.76 Aligned_cols=17 Identities=24% Similarity=-0.085 Sum_probs=12.4
Q ss_pred HHHHhhhcCCcEEEecC
Q psy15555 151 GVEALLSFQPDIYIDTM 167 (488)
Q Consensus 151 ~~~~l~~~~pDiii~~~ 167 (488)
....++..+||+++...
T Consensus 71 ~~~~l~~~~~Dliv~a~ 87 (209)
T 1meo_A 71 IDLVLEEFSIDIVCLAG 87 (209)
T ss_dssp HHHHHHHTTCCEEEEES
T ss_pred HHHHHHhcCCCEEEEcc
Confidence 44577889999877553
No 293
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=23.81 E-value=1.4e+02 Score=27.14 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=40.2
Q ss_pred CceEEEEEe-cCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHH--hCcEEEEcCCCCcCCccHHHHHHcC
Q psy15555 324 DNLKLIFIG-STRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS--EGLIGLHAMWNEHFGIGIVECMAAG 400 (488)
Q Consensus 324 ~~~~l~ivG-~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~--~ad~~v~~s~~e~~g~~~lEa~a~G 400 (488)
+++.++-+- ..+ +..++.+++.+.. .. ..++.++++ .+|+++..+....-.-.+.+++..|
T Consensus 25 ~~~~l~av~d~~~--------~~~~~~~~~~~~~---~~-----~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~g 88 (344)
T 3ezy_A 25 DDAILYAISDVRE--------DRLREMKEKLGVE---KA-----YKDPHELIEDPNVDAVLVCSSTNTHSELVIACAKAK 88 (344)
T ss_dssp TTEEEEEEECSCH--------HHHHHHHHHHTCS---EE-----ESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCH--------HHHHHHHHHhCCC---ce-----eCCHHHHhcCCCCCEEEEcCCCcchHHHHHHHHhcC
Confidence 677776443 332 4445555665532 11 134555666 7897666553332223467899999
Q ss_pred CcEEEeCC
Q psy15555 401 LIMIAHKS 408 (488)
Q Consensus 401 ~PvI~~~~ 408 (488)
++|++-..
T Consensus 89 k~v~~EKP 96 (344)
T 3ezy_A 89 KHVFCEKP 96 (344)
T ss_dssp CEEEEESC
T ss_pred CeEEEECC
Confidence 99998654
No 294
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=23.79 E-value=1.9e+02 Score=26.34 Aligned_cols=70 Identities=11% Similarity=0.088 Sum_probs=40.3
Q ss_pred CceEEEEEe-cCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHH--hCcEEEEcCCCCcCCccHHHHHHcC
Q psy15555 324 DNLKLIFIG-STRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS--EGLIGLHAMWNEHFGIGIVECMAAG 400 (488)
Q Consensus 324 ~~~~l~ivG-~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~--~ad~~v~~s~~e~~g~~~lEa~a~G 400 (488)
+++.++-+- ..+ +..++.+++.++. +... .++.+++. ..|+++..+....-.-.+.+++..|
T Consensus 47 ~~~~lvav~d~~~--------~~~~~~a~~~g~~--~~~~-----~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aG 111 (357)
T 3ec7_A 47 SGVEVVAVCDIVA--------GRAQAALDKYAIE--AKDY-----NDYHDLINDKDVEVVIITASNEAHADVAVAALNAN 111 (357)
T ss_dssp TTEEEEEEECSST--------THHHHHHHHHTCC--CEEE-----SSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTT
T ss_pred CCcEEEEEEeCCH--------HHHHHHHHHhCCC--Ceee-----CCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCC
Confidence 677776443 333 3445556666531 2222 34445565 4787666553332233567899999
Q ss_pred CcEEEeCC
Q psy15555 401 LIMIAHKS 408 (488)
Q Consensus 401 ~PvI~~~~ 408 (488)
++|++-..
T Consensus 112 k~Vl~EKP 119 (357)
T 3ec7_A 112 KYVFCEKP 119 (357)
T ss_dssp CEEEEESS
T ss_pred CCEEeecC
Confidence 99998654
No 295
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=23.76 E-value=3.6e+02 Score=23.34 Aligned_cols=96 Identities=9% Similarity=0.062 Sum_probs=53.9
Q ss_pred HHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEe-cCCChHHHHHH--HHhCcEEEE
Q psy15555 306 LQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFK-VNLPYEDMKKE--FSEGLIGLH 382 (488)
Q Consensus 306 ~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~-g~~~~~el~~~--~~~ad~~v~ 382 (488)
..++....+.+..+ -.+.++-+.. + ....+..+++.+.+...|++-..... +.-+.+++.+. -..+|++|.
T Consensus 22 ~al~~A~~la~~~~----a~l~ll~v~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~ 95 (290)
T 3mt0_A 22 LALKRAQLIAGVTQ----SHLHLLVCEK-R-RDHSAALNDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIK 95 (290)
T ss_dssp HHHHHHHHHHHHHC----CEEEEEEECS-S-SCCHHHHHHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHhcC----CeEEEEEeeC-c-HHHHHHHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEE
Confidence 44555555555541 2344443433 2 33446667777777777765444443 33355777777 567998777
Q ss_pred cCCCCc------CCccHHHH--HHcCCcEEEeCC
Q psy15555 383 AMWNEH------FGIGIVEC--MAAGLIMIAHKS 408 (488)
Q Consensus 383 ~s~~e~------~g~~~lEa--~a~G~PvI~~~~ 408 (488)
++...+ +| +..+. ..++|||+..+.
T Consensus 96 G~~~~~~~~~~~~g-s~~~~vl~~~~~PVlvv~~ 128 (290)
T 3mt0_A 96 QHFPDNPLKKAILT-PDDWKLLRFAPCPVLMTKT 128 (290)
T ss_dssp ECCCSCTTSTTSCC-HHHHHHHHHCSSCEEEECC
T ss_pred ecccCCchhhcccC-HHHHHHHhcCCCCEEEecC
Confidence 764322 23 23332 346999999764
No 296
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=23.66 E-value=2.7e+02 Score=22.36 Aligned_cols=14 Identities=0% Similarity=-0.016 Sum_probs=7.9
Q ss_pred HHHHHcCCcEEEeC
Q psy15555 394 VECMAAGLIMIAHK 407 (488)
Q Consensus 394 lEa~a~G~PvI~~~ 407 (488)
+=|...-+|||.-+
T Consensus 84 vvA~~t~~PVIgVP 97 (173)
T 4grd_A 84 MLAAKTTVPVLGVP 97 (173)
T ss_dssp HHHHHCCSCEEEEE
T ss_pred hheecCCCCEEEEE
Confidence 34455566666644
No 297
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=23.57 E-value=2.8e+02 Score=22.07 Aligned_cols=77 Identities=9% Similarity=-0.029 Sum_probs=44.1
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC-CChHHHHHHHH-----hCcEEEEcCCCCcCCccHHHHHHcCC
Q psy15555 328 LIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN-LPYEDMKKEFS-----EGLIGLHAMWNEHFGIGIVECMAAGL 401 (488)
Q Consensus 328 l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-~~~~el~~~~~-----~ad~~v~~s~~e~~g~~~lEa~a~G~ 401 (488)
.+|.|+..+ ....++..+.++++|++..+...+- ...+++.++.+ .++++|.....++ .+.-+=|...-+
T Consensus 7 ~Iimgs~SD---~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa-~LpgvvA~~t~~ 82 (163)
T 3ors_A 7 AVIMGSSSD---WKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAA-HLPGMVASLTTL 82 (163)
T ss_dssp EEEESCGGG---HHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSC-CHHHHHHHHCSS
T ss_pred EEEECcHHH---HHHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchh-hhHHHHHhccCC
Confidence 445555432 3566677777777777655555543 24456666654 3566665543322 344455566778
Q ss_pred cEEEeCC
Q psy15555 402 IMIAHKS 408 (488)
Q Consensus 402 PvI~~~~ 408 (488)
|||.-+.
T Consensus 83 PVIgVP~ 89 (163)
T 3ors_A 83 PVIGVPI 89 (163)
T ss_dssp CEEEEEE
T ss_pred CEEEeeC
Confidence 8887543
No 298
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=23.53 E-value=3.2e+02 Score=25.21 Aligned_cols=105 Identities=16% Similarity=0.122 Sum_probs=58.0
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHH---cC
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMA---AG 400 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a---~G 400 (488)
++.|+.+.+ .....++...+..|. .|.... +..+....+.. .|+++.-. ..+.-|..+++.+. ..
T Consensus 2 ~ILIVDDd~-----~~~~~l~~~L~~~g~--~v~~a~--~~~eal~~l~~~~~DlvllD~~mp~~dG~ell~~lr~~~~~ 72 (387)
T 1ny5_A 2 NVLVIEDDK-----VFRGLLEEYLSMKGI--KVESAE--RGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPE 72 (387)
T ss_dssp EEEEECCCH-----HHHHHHHHHHHHHTC--EEEEES--SHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHHCTT
T ss_pred EEEEEECCH-----HHHHHHHHHHHHCCC--EEEEEC--CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCC
Confidence 345555443 445666666666554 244333 33566666554 46555433 23334555665553 36
Q ss_pred CcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 401 LIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 401 ~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
+|||.-...+..+ +.++.+ ..+++.. +.+++...+.+++.
T Consensus 73 ~pvIvlT~~~~~~~~~~a~~~G----a~dyl~KP~~~~~L~~~i~~~l~ 117 (387)
T 1ny5_A 73 TEVIVITGHGTIKTAVEAMKMG----AYDFLTKPCMLEEIELTINKAIE 117 (387)
T ss_dssp SEEEEEEETTCHHHHHHHHTTT----CCEEEEESCCHHHHHHHHHHHHH
T ss_pred CcEEEEeCCCCHHHHHHHHhcC----ceEEecCCCCHHHHHHHHHHHHH
Confidence 7877643322221 223333 5567654 89999999999886
No 299
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=23.32 E-value=2.8e+02 Score=24.77 Aligned_cols=108 Identities=12% Similarity=0.134 Sum_probs=56.0
Q ss_pred ChHHHHHHHHhCcEEEEc-CCCCcCCccHHHHHHcCCcEEEeCCCCCc-cceec---cCCCccccceecC-CHHHHHHHH
Q psy15555 366 PYEDMKKEFSEGLIGLHA-MWNEHFGIGIVECMAAGLIMIAHKSGGPK-MDIVI---EDPETCRNGFLAC-DEVEYAQTI 439 (488)
Q Consensus 366 ~~~el~~~~~~ad~~v~~-s~~e~~g~~~lEa~a~G~PvI~~~~~~~~-~eiv~---~~~~~~~~g~~~~-~~~~l~~~i 439 (488)
+...-..-++.||++|.. ...|+|--.+++... +.++|.... +.. ...-. ++ .....-|+-+ +...+++.|
T Consensus 70 ptp~d~~~l~~ADlvv~nG~~lE~wl~k~~~~~~-~~~~v~~s~-gi~~~~~~~~~~~~-~~DPHvWldp~n~~~~a~~I 146 (307)
T 3ujp_A 70 PTPSDIVKAQDADLILYNGMNLERWFEQFLGNVK-DVPSVVLTE-GIEPIPIADGPYTD-KPNPHAWMSPRNALVYVENI 146 (307)
T ss_dssp CCHHHHHHHHHCSEEEECCTTSSTTHHHHHHTSC-SCCEEETTT-TCCCCBCCSSSSTT-SBCCCCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCCEEEEcCCChHHHHHHHHHhCC-CCCEEEeeC-CccccccccccCCC-CCCCCcCCCHHHHHHHHHHH
Confidence 334455677889966654 456766666666552 455554322 221 01100 00 0001123322 555666666
Q ss_pred HHHH-ccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy15555 440 KLIL-HLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 440 ~~ll-~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~ 478 (488)
.+.| ..||+......+|+.++.++ .+..-+++.+.+.
T Consensus 147 ~~~L~~~DP~~a~~Y~~Na~~~~~~--L~~Ld~~~~~~l~ 184 (307)
T 3ujp_A 147 RQAFVELDPDNAKYYNANAAVYSEQ--LKAIDRQLGADLE 184 (307)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHH--HHHHHHHHHHHHS
T ss_pred HHHHHHhCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHh
Confidence 6544 34888888888888766654 3444444444443
No 300
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=23.25 E-value=54 Score=24.42 Aligned_cols=67 Identities=12% Similarity=0.153 Sum_probs=45.1
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcE
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIM 403 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~Pv 403 (488)
.+..++|.|.-.. -.++++++++++|- .+.+.++ ...|++|.+...+..|-.+-.|...|+||
T Consensus 12 ~G~~~ViTG~l~~-----~R~e~k~~ie~~Gg----kv~~sVs--------kkT~~lV~g~~~e~~gsKl~kA~~lgI~I 74 (113)
T 2cok_A 12 SNMKILTLGKLSR-----NKDEVKAMIEKLGG----KLTGTAN--------KASLCISTKKEVEKMNKKMEEVKEANIRV 74 (113)
T ss_dssp SSCEEEECSCCSS-----CHHHHHHHHHHTTC----EEESCST--------TCSEEECCHHHHHHCCHHHHHHHHTTCCE
T ss_pred CCCEEEEEecCCC-----CHHHHHHHHHHCCC----EEcCccc--------cCccEEEECCCCCCCChHHHHHHHCCCcE
Confidence 4678888887532 23788888888873 3456664 23555555522234577899999999999
Q ss_pred EEeC
Q psy15555 404 IAHK 407 (488)
Q Consensus 404 I~~~ 407 (488)
|.-+
T Consensus 75 vsE~ 78 (113)
T 2cok_A 75 VSED 78 (113)
T ss_dssp ECTH
T ss_pred EeHH
Confidence 9643
No 301
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=23.18 E-value=4.1e+02 Score=23.90 Aligned_cols=34 Identities=15% Similarity=-0.008 Sum_probs=20.7
Q ss_pred ccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 52 ~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
++||+++- ........++.+.+. ++++++..+..
T Consensus 5 ~~~vgiiG--------~G~~g~~~~~~l~~~-~~~~lvav~d~ 38 (354)
T 3db2_A 5 PVGVAAIG--------LGRWAYVMADAYTKS-EKLKLVTCYSR 38 (354)
T ss_dssp CEEEEEEC--------CSHHHHHHHHHHTTC-SSEEEEEEECS
T ss_pred cceEEEEc--------cCHHHHHHHHHHHhC-CCcEEEEEECC
Confidence 57899873 222334566777663 57887755544
No 302
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=23.14 E-value=4e+02 Score=23.73 Aligned_cols=35 Identities=6% Similarity=-0.001 Sum_probs=20.9
Q ss_pred cccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 51 VLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 51 ~~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
+++||+++.. .......++.|.+. ++++++..+..
T Consensus 4 ~~~~igiiG~--------G~~g~~~~~~l~~~-~~~~l~av~d~ 38 (330)
T 3e9m_A 4 DKIRYGIMST--------AQIVPRFVAGLRES-AQAEVRGIASR 38 (330)
T ss_dssp CCEEEEECSC--------CTTHHHHHHHHHHS-SSEEEEEEBCS
T ss_pred CeEEEEEECc--------hHHHHHHHHHHHhC-CCcEEEEEEeC
Confidence 3578998632 22334456777764 57887765554
No 303
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=23.05 E-value=3.7e+02 Score=23.22 Aligned_cols=34 Identities=9% Similarity=-0.099 Sum_probs=18.8
Q ss_pred hCcEEEE-cCCCCcCCccHHHHHHcCCcEEEeCCC
Q psy15555 376 EGLIGLH-AMWNEHFGIGIVECMAAGLIMIAHKSG 409 (488)
Q Consensus 376 ~ad~~v~-~s~~e~~g~~~lEa~a~G~PvI~~~~~ 409 (488)
..|.++. +...+...-.+-++...|+|||+.+..
T Consensus 61 ~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~ 95 (297)
T 3rot_A 61 YPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTR 95 (297)
T ss_dssp CCSEEEECCCCSSTTHHHHHHHHHHTCCEEEESCC
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 4664443 333332222344566779999997753
No 304
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=23.01 E-value=3e+02 Score=22.27 Aligned_cols=13 Identities=15% Similarity=0.112 Sum_probs=6.6
Q ss_pred HHHcCCcEEEeCC
Q psy15555 396 CMAAGLIMIAHKS 408 (488)
Q Consensus 396 a~a~G~PvI~~~~ 408 (488)
|...-+|||.-+.
T Consensus 96 Aa~T~~PVIGVPv 108 (181)
T 4b4k_A 96 AAKTNLPVIGVPV 108 (181)
T ss_dssp HTTCCSCEEEEEC
T ss_pred HhcCCCCEEEEec
Confidence 4444555555444
No 305
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=22.95 E-value=3e+02 Score=25.06 Aligned_cols=93 Identities=8% Similarity=-0.011 Sum_probs=50.7
Q ss_pred CeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChH
Q psy15555 289 PVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYE 368 (488)
Q Consensus 289 ~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 368 (488)
+..+..+|.- .-+....+.++. . ++++++-+-+.. + +..++.+++++.. .. ..
T Consensus 26 ~irvgiiG~G--~~~~~~~~~~~~----~------~~~~lvav~d~~----~---~~a~~~a~~~~~~---~~-----~~ 78 (361)
T 3u3x_A 26 ELRFAAVGLN--HNHIYGQVNCLL----R------AGARLAGFHEKD----D---ALAAEFSAVYADA---RR-----IA 78 (361)
T ss_dssp CCEEEEECCC--STTHHHHHHHHH----H------TTCEEEEEECSC----H---HHHHHHHHHSSSC---CE-----ES
T ss_pred CcEEEEECcC--HHHHHHHHHHhh----c------CCcEEEEEEcCC----H---HHHHHHHHHcCCC---cc-----cC
Confidence 4667777742 223233344332 1 577776555432 1 4455666666521 11 13
Q ss_pred HHHHHHHh--CcEEEEcCCCCcCCccHHHHHHcCCcEEEeCC
Q psy15555 369 DMKKEFSE--GLIGLHAMWNEHFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 369 el~~~~~~--ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~ 408 (488)
++.++++. .|+++..+....-.-.+.+|+.+|++|++-..
T Consensus 79 ~~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP 120 (361)
T 3u3x_A 79 TAEEILEDENIGLIVSAAVSSERAELAIRAMQHGKDVLVDKP 120 (361)
T ss_dssp CHHHHHTCTTCCEEEECCCHHHHHHHHHHHHHTTCEEEEESC
T ss_pred CHHHHhcCCCCCEEEEeCChHHHHHHHHHHHHCCCeEEEeCC
Confidence 45555665 78666554322222346799999999999654
No 306
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=22.78 E-value=4e+02 Score=24.98 Aligned_cols=105 Identities=9% Similarity=0.041 Sum_probs=59.0
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHHc----
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMAA---- 399 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a~---- 399 (488)
++.|+.+.+ .....+....+..|. .|..... ..+....+.. .|+++.-- ..+.-|..+++.+..
T Consensus 3 ~iLivdD~~-----~~~~~l~~~L~~~~~--~v~~a~~--~~~al~~~~~~~~dlvllD~~mp~~~G~~~~~~l~~~~~~ 73 (459)
T 1w25_A 3 RILVVDDIE-----ANVRLLEAKLTAEYY--EVSTAMD--GPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTT 73 (459)
T ss_dssp EEEEECSST-----THHHHHHHHHHHTTC--EEEEESS--HHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTT
T ss_pred eEEEEeCCH-----HHHHHHHHHHHHcCC--EEEEECC--HHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHhcCccc
Confidence 456666654 344666666665543 3443333 3555555543 56655433 233345666666642
Q ss_pred -CCcEEEeCCCCCcc---ceeccCCCccccceecC--CHHHHHHHHHHHHc
Q psy15555 400 -GLIMIAHKSGGPKM---DIVIEDPETCRNGFLAC--DEVEYAQTIKLILH 444 (488)
Q Consensus 400 -G~PvI~~~~~~~~~---eiv~~~~~~~~~g~~~~--~~~~l~~~i~~ll~ 444 (488)
.+|||.-...+..+ +.++.+ ..+++.+ +.+++..++..++.
T Consensus 74 ~~~pii~lt~~~~~~~~~~a~~~G----a~~~l~KP~~~~~l~~~i~~~~~ 120 (459)
T 1w25_A 74 RHIPVVLITALDGRGDRIQGLESG----ASDFLTKPIDDVMLFARVRSLTR 120 (459)
T ss_dssp TTSCEEEEECSSCHHHHHHHHHHT----CCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHcC----CCEEEeCCCCHHHHHHHHHHHHH
Confidence 57887743322221 223334 5677766 89999999998876
No 307
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=22.66 E-value=3.4e+02 Score=24.45 Aligned_cols=15 Identities=13% Similarity=-0.174 Sum_probs=9.5
Q ss_pred ccHHHHHHcCCcEEE
Q psy15555 391 IGIVECMAAGLIMIA 405 (488)
Q Consensus 391 ~~~lEa~a~G~PvI~ 405 (488)
..+-.|+..|.....
T Consensus 139 ~pi~~Ai~~G~~~tG 153 (329)
T 2bw0_A 139 SAINWTLIHGDKKGG 153 (329)
T ss_dssp CHHHHHHHTTCSEEE
T ss_pred CHHHHHHHcCCCcEE
Confidence 445567777776644
No 308
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=22.65 E-value=2.4e+02 Score=21.29 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=48.3
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHH--HHhCcEEEEcCCCCcCCccHHHH---HHc
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKE--FSEGLIGLHAMWNEHFGIGIVEC---MAA 399 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~--~~~ad~~v~~s~~e~~g~~~lEa---~a~ 399 (488)
...++++-..+ +. +++. ++.|. -.+.|..+..+...- ...+|+++.....+.-...+... +.-
T Consensus 30 g~~v~vid~~~-----~~---~~~~-~~~g~---~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~~~~~~a~~~~~ 97 (140)
T 3fwz_A 30 DIPLVVIETSR-----TR---VDEL-RERGV---RAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAGEIVASARAKNP 97 (140)
T ss_dssp TCCEEEEESCH-----HH---HHHH-HHTTC---EEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEECCH-----HH---HHHH-HHcCC---CEEECCCCCHHHHHhcCcccCCEEEEECCChHHHHHHHHHHHHHCC
Confidence 45677777653 33 3332 23342 245566555554432 46788777654322211112222 123
Q ss_pred CCcEEEeCC-CCCccceeccCCCccccceecCCHHHHHHHHHHHHc
Q psy15555 400 GLIMIAHKS-GGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILH 444 (488)
Q Consensus 400 G~PvI~~~~-~~~~~eiv~~~~~~~~~g~~~~~~~~l~~~i~~ll~ 444 (488)
++.+|+--. .... +.+... +.-.++....+.+..+.+.+.
T Consensus 98 ~~~iiar~~~~~~~-~~l~~~----G~d~vi~p~~~~a~~i~~~l~ 138 (140)
T 3fwz_A 98 DIEIIARAHYDDEV-AYITER----GANQVVMGEREIARTMLELLE 138 (140)
T ss_dssp SSEEEEEESSHHHH-HHHHHT----TCSEEEEHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCHHHH-HHHHHC----CCCEEECchHHHHHHHHHHhh
Confidence 567776433 2222 444433 333444444556666665543
No 309
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=22.59 E-value=3.4e+02 Score=22.66 Aligned_cols=86 Identities=15% Similarity=0.085 Sum_probs=0.0
Q ss_pred ccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCCCCCChhHHHHHhhhhcccccCCCeeEEEEeeccceee
Q psy15555 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRKFVE 131 (488)
Q Consensus 52 ~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 131 (488)
.+||+++.+ |...-+..++.+..+..-..+|..+.++........... ..++++..++...+..
T Consensus 2 m~riavl~S------g~Gsnl~ali~~~~~~~l~~eI~~Visn~~~a~v~~~A~----------~~gIp~~~~~~~~~~~ 65 (211)
T 3p9x_A 2 MKRVAIFAS------GSGTNAEAIIQSQKAGQLPCEVALLITDKPGAKVVERVK----------VHEIPVCALDPKTYPS 65 (211)
T ss_dssp -CEEEEECC------TTCHHHHHHHHHHHTTCCSSEEEEEEESCSSSHHHHHHH----------TTTCCEEECCGGGSSS
T ss_pred CCEEEEEEe------CCchHHHHHHHHHHcCCCCcEEEEEEECCCCcHHHHHHH----------HcCCCEEEeChhhcCc
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHhhhcCCcEEEe
Q psy15555 132 ASLYPYFTLLGQSIGSMILGVEALLSFQPDIYID 165 (488)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDiii~ 165 (488)
+..+..- ..+.++..+||+++.
T Consensus 66 r~~~d~~------------~~~~l~~~~~Dliv~ 87 (211)
T 3p9x_A 66 KEAYEIE------------VVQQLKEKQIDFVVL 87 (211)
T ss_dssp HHHHHHH------------HHHHHHHTTCCEEEE
T ss_pred hhhhHHH------------HHHHHHhcCCCEEEE
No 310
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=22.52 E-value=4.2e+02 Score=23.72 Aligned_cols=34 Identities=15% Similarity=0.294 Sum_probs=20.9
Q ss_pred ccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 52 ~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
++||+++- ........++.|.+. ++++++..+..
T Consensus 4 ~~rvgiiG--------~G~~g~~~~~~l~~~-~~~~l~av~d~ 37 (344)
T 3euw_A 4 TLRIALFG--------AGRIGHVHAANIAAN-PDLELVVIADP 37 (344)
T ss_dssp CEEEEEEC--------CSHHHHHHHHHHHHC-TTEEEEEEECS
T ss_pred ceEEEEEC--------CcHHHHHHHHHHHhC-CCcEEEEEECC
Confidence 47899873 223334566777763 57887755543
No 311
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=22.47 E-value=3.6e+02 Score=24.14 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=21.3
Q ss_pred ccEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEE
Q psy15555 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIY 91 (488)
Q Consensus 52 ~~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~ 91 (488)
.|||+++.+... .....+.|.+..|++++...
T Consensus 3 ~mkil~~~~~~~--------~~~~~~~l~~~~p~~~~~~~ 34 (315)
T 3pp8_A 3 AMEIIFYHPTFN--------AAWWVNALEKALPHARVREW 34 (315)
T ss_dssp CEEEEEECSSSC--------HHHHHHHHHHHSTTEEEEEC
T ss_pred ceEEEEEcCCCc--------hHHHHHHHHHHCCCCEEEec
Confidence 489988654321 23455788888889887654
No 312
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=22.34 E-value=3.7e+02 Score=23.01 Aligned_cols=34 Identities=18% Similarity=0.070 Sum_probs=17.9
Q ss_pred hCcEE-EEcCCCCcCCccHHHHHHcCCcEEEeCCC
Q psy15555 376 EGLIG-LHAMWNEHFGIGIVECMAAGLIMIAHKSG 409 (488)
Q Consensus 376 ~ad~~-v~~s~~e~~g~~~lEa~a~G~PvI~~~~~ 409 (488)
..|.+ +.+...+...-.+-++...|+|||+.+..
T Consensus 64 ~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~ 98 (293)
T 3l6u_A 64 KVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRM 98 (293)
T ss_dssp TCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSC
T ss_pred CCCEEEEecCChHHHHHHHHHHHHcCCCEEEecCC
Confidence 46744 43332222112233455679999998653
No 313
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=22.33 E-value=2.3e+02 Score=20.70 Aligned_cols=64 Identities=11% Similarity=0.057 Sum_probs=33.1
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcE
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIM 403 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~Pv 403 (488)
....++|.|.-+.. . .++++++++.+|. .+.+.++ ...|++|.+. +.++-.+-.|...|+||
T Consensus 34 ~G~~~v~TG~l~~~---~-R~e~~~~i~~~Gg----~v~~sVS--------kkTd~LV~G~--~~g~sK~~kA~~lgI~I 95 (109)
T 2k6g_A 34 EGLIFVITGVLESI---E-RDEAKSLIERYGG----KVTGNVS--------KKTNYLVMGR--DSGQSKSDKAAALGTKI 95 (109)
T ss_dssp TTCEEEEESBCSSC---C-HHHHHHHHHHTTC----EEESSCC--------TTCCEEEECB--CCCHHHHHHHHHHTCEE
T ss_pred CCCEEEEeeeCCCC---C-HHHHHHHHHHcCC----EeeCccc--------CCceEEEECC--CCChHHHHHHHHcCCeE
Confidence 35566666654211 1 2666666666652 3345553 2355555542 11125566666777777
Q ss_pred EE
Q psy15555 404 IA 405 (488)
Q Consensus 404 I~ 405 (488)
|.
T Consensus 96 i~ 97 (109)
T 2k6g_A 96 ID 97 (109)
T ss_dssp EC
T ss_pred Ee
Confidence 64
No 314
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=22.33 E-value=1.2e+02 Score=27.67 Aligned_cols=93 Identities=12% Similarity=0.106 Sum_probs=49.7
Q ss_pred CCeEEEEeeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEe-cCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCC
Q psy15555 288 GPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIG-STRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLP 366 (488)
Q Consensus 288 ~~~~i~~~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG-~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 366 (488)
+...+..+|.= .-+ ...+.++.+. . +++.++-+- ..+ +..++.+++.+. ...
T Consensus 12 ~~~rvgiiG~G--~~g-~~~~~~l~~~---~-----~~~~lvav~d~~~--------~~~~~~~~~~~~----~~~---- 64 (354)
T 3q2i_A 12 RKIRFALVGCG--RIA-NNHFGALEKH---A-----DRAELIDVCDIDP--------AALKAAVERTGA----RGH---- 64 (354)
T ss_dssp SCEEEEEECCS--TTH-HHHHHHHHHT---T-----TTEEEEEEECSSH--------HHHHHHHHHHCC----EEE----
T ss_pred CcceEEEEcCc--HHH-HHHHHHHHhC---C-----CCeEEEEEEcCCH--------HHHHHHHHHcCC----cee----
Confidence 45677777751 111 1233444332 2 467766433 322 445555566553 222
Q ss_pred hHHHHHHHH--hCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCC
Q psy15555 367 YEDMKKEFS--EGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKS 408 (488)
Q Consensus 367 ~~el~~~~~--~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~ 408 (488)
.++.++++ ..|+++..+....-.-.+.+++..|++|++-..
T Consensus 65 -~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP 107 (354)
T 3q2i_A 65 -ASLTDMLAQTDADIVILTTPSGLHPTQSIECSEAGFHVMTEKP 107 (354)
T ss_dssp -SCHHHHHHHCCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSS
T ss_pred -CCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHCCCCEEEeCC
Confidence 33444555 688666655333222346789999999998654
No 315
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=22.32 E-value=2.8e+02 Score=21.53 Aligned_cols=46 Identities=9% Similarity=-0.012 Sum_probs=26.3
Q ss_pred ChHHHHHHHH--hCcEEEEcCCCCc-C----CccHHHHH--HcCCcEEEeCCCCC
Q psy15555 366 PYEDMKKEFS--EGLIGLHAMWNEH-F----GIGIVECM--AAGLIMIAHKSGGP 411 (488)
Q Consensus 366 ~~~el~~~~~--~ad~~v~~s~~e~-~----g~~~lEa~--a~G~PvI~~~~~~~ 411 (488)
+.+++.++-. .+|++|+++...+ + --++.|.+ .+.|||+.-+....
T Consensus 105 ~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv~~~~~ 159 (170)
T 2dum_A 105 PWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIKEVDE 159 (170)
T ss_dssp HHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEECCCCC
T ss_pred hHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEEccCCc
Confidence 4566666666 6887776664221 1 11333432 36899999775443
No 316
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=22.25 E-value=3.5e+02 Score=22.66 Aligned_cols=17 Identities=12% Similarity=-0.117 Sum_probs=12.9
Q ss_pred HHHHhhhcCCcEEEecC
Q psy15555 151 GVEALLSFQPDIYIDTM 167 (488)
Q Consensus 151 ~~~~l~~~~pDiii~~~ 167 (488)
..+.++..+||+++...
T Consensus 74 ~~~~L~~~~~Dlivlag 90 (215)
T 3kcq_A 74 ISTVLREHDVDLVCLAG 90 (215)
T ss_dssp HHHHHHHTTCSEEEESS
T ss_pred HHHHHHHhCCCEEEEeC
Confidence 45678899999887654
No 317
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=22.20 E-value=18 Score=24.55 Aligned_cols=83 Identities=16% Similarity=0.175 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCCcCCccHHHHHHcCCcEEEeCCCCCccceeccCC
Q psy15555 341 VCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDP 420 (488)
Q Consensus 341 ~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e~~g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~ 420 (488)
+....+++.++..- +.+.+-.. .+..++..++... --.|+|.++.-.|....++-+-.+
T Consensus 13 niissvqerakhny-pgryirta-tssqdirdiiksm-------------------kdngkplvvfvngasqndvnefqn 71 (112)
T 2lnd_A 13 NIISSVQERAKHNY-PGRYIRTA-TSSQDIRDIIKSM-------------------KDNGKPLVVFVNGASQNDVNEFQN 71 (112)
T ss_dssp HHHHHHHHHHHHHS-CTTTEEEE-CSHHHHHHHHHHH-------------------TTCCSCEEEEECSCCHHHHHHHHH
T ss_pred hHHHHHHHHhhcCC-CCceeeec-cchhhHHHHHHHH-------------------HhcCCeEEEEecCcccccHHHHHH
Confidence 55667777766532 32222222 2446776665532 134888888766544322211111
Q ss_pred Cccccceec-----CCHHHHHHHHHHHHc
Q psy15555 421 ETCRNGFLA-----CDEVEYAQTIKLILH 444 (488)
Q Consensus 421 ~~~~~g~~~-----~~~~~l~~~i~~ll~ 444 (488)
+....|... .|++++.+.+.+++.
T Consensus 72 eakkegvsydvlkstdpeeltqrvreflk 100 (112)
T 2lnd_A 72 EAKKEGVSYDVLKSTDPEELTQRVREFLK 100 (112)
T ss_dssp HHHHHTCEEEEEECCCHHHHHHHHHHHHH
T ss_pred HHHhcCcchhhhccCCHHHHHHHHHHHHH
Confidence 111223322 289999999888875
No 318
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=22.19 E-value=3e+02 Score=21.95 Aligned_cols=78 Identities=10% Similarity=0.023 Sum_probs=48.7
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecC-CChHHHHHHHHh-----CcEEEEcCCCCcCCccHHHHHHcC
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN-LPYEDMKKEFSE-----GLIGLHAMWNEHFGIGIVECMAAG 400 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-~~~~el~~~~~~-----ad~~v~~s~~e~~g~~~lEa~a~G 400 (488)
-.++.|+..+ ....++..+.++++|++..+...+- .+.+++.++.+. ++++|.....++ .+.-+=|...-
T Consensus 8 V~IimgS~SD---~~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa-~LpgvvA~~t~ 83 (166)
T 3oow_A 8 VGVIMGSKSD---WSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAA-HLPGMVAAKTT 83 (166)
T ss_dssp EEEEESSGGG---HHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSC-CHHHHHHHTCS
T ss_pred EEEEECcHHh---HHHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcch-hhHHHHHhccC
Confidence 3455665533 3667777788888887656666553 245667777643 577776543332 44555566778
Q ss_pred CcEEEeCC
Q psy15555 401 LIMIAHKS 408 (488)
Q Consensus 401 ~PvI~~~~ 408 (488)
+|||.-+.
T Consensus 84 ~PVIgVP~ 91 (166)
T 3oow_A 84 LPVLGVPV 91 (166)
T ss_dssp SCEEEEEC
T ss_pred CCEEEeec
Confidence 99998655
No 319
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=22.08 E-value=1.1e+02 Score=21.98 Aligned_cols=47 Identities=11% Similarity=0.177 Sum_probs=30.7
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCc
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGL 378 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad 378 (488)
.++++|+...-. +.....+..+++..+++ +.+.+ +..||........
T Consensus 35 ka~lViiA~D~~---~~~~~~i~~~c~~~~vp--~~~~~--s~~eLG~A~Gk~~ 81 (101)
T 3v7q_A 35 RAKLVLLTEDAS---SNTAKKVTDKCNYYKVP--YKKVE--SRAVLGRSIGKEA 81 (101)
T ss_dssp CCSEEEEETTSC---HHHHHHHHHHHHHTTCC--EEEES--CHHHHHHHTTSSC
T ss_pred ceeEEEEecccc---ccchhhhcccccccCCC--eeeec--hHHHHHhhhCccc
Confidence 566666554422 24567788888888765 55554 5589988887753
No 320
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=22.04 E-value=2.3e+02 Score=23.74 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=40.1
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHhCcEEEEcCCCC---cCCccHHHHHHcC
Q psy15555 324 DNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNE---HFGIGIVECMAAG 400 (488)
Q Consensus 324 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~ad~~v~~s~~e---~~g~~~lEa~a~G 400 (488)
.++.+.+.|-.+ +..+.++++++.+|. .+...++ ..+.-+|.....+ .-..+.+.|++.|
T Consensus 6 ~~~~i~~sg~~~-----~~~~~l~~~~~~~G~----~~~~~~~--------~~~THlI~~~~~~~~~~rt~K~~~a~~~g 68 (229)
T 1l0b_A 6 RDISMVVSGLTP-----KEVMIVQKFAEKYRL----ALTDVIT--------EETTHVIIKTDAEFVCERTLKYFLGIAGG 68 (229)
T ss_dssp CCCEEEEESCCH-----HHHHHHHHHHHHTTC----EECSSCC--------SSCCEEEECBCTTSEECCCHHHHHHHHTT
T ss_pred CCeEEEEcCCCH-----HHHHHHHHHHHHcCC----EEeCCcC--------CCCCEEEEcCCccccccccHHHHHHHHCC
Confidence 345555555332 445788999988873 3333332 2345445544322 2356889999999
Q ss_pred CcEEEe
Q psy15555 401 LIMIAH 406 (488)
Q Consensus 401 ~PvI~~ 406 (488)
+|||..
T Consensus 69 ~~IV~~ 74 (229)
T 1l0b_A 69 KWIVSY 74 (229)
T ss_dssp CEEEET
T ss_pred CcEecH
Confidence 999984
No 321
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=22.01 E-value=3.6e+02 Score=22.72 Aligned_cols=83 Identities=8% Similarity=0.029 Sum_probs=42.3
Q ss_pred HHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEec-CCChHHHHHHHHhCcEEEEcCC
Q psy15555 307 QLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKV-NLPYEDMKKEFSEGLIGLHAMW 385 (488)
Q Consensus 307 ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g-~~~~~el~~~~~~ad~~v~~s~ 385 (488)
.....+.|.+. ...++++-.... +++++++++. .+.+.. ....+ .+..+|+++..+.
T Consensus 43 a~~ka~~Ll~~-------GA~VtVvap~~~-------~~l~~l~~~~----~i~~i~~~~~~~----dL~~adLVIaAT~ 100 (223)
T 3dfz_A 43 ATRRIKGFLQE-------GAAITVVAPTVS-------AEINEWEAKG----QLRVKRKKVGEE----DLLNVFFIVVATN 100 (223)
T ss_dssp HHHHHHHHGGG-------CCCEEEECSSCC-------HHHHHHHHTT----SCEEECSCCCGG----GSSSCSEEEECCC
T ss_pred HHHHHHHHHHC-------CCEEEEECCCCC-------HHHHHHHHcC----CcEEEECCCCHh----HhCCCCEEEECCC
Confidence 34445555544 345555553321 5577776643 344443 33333 3567887766554
Q ss_pred CCcCCccHHHHHHcCCcEEEeCCCCC
Q psy15555 386 NEHFGIGIVECMAAGLIMIAHKSGGP 411 (488)
Q Consensus 386 ~e~~g~~~lEa~a~G~PvI~~~~~~~ 411 (488)
.+.....+.+....|+||-..|.+..
T Consensus 101 d~~~N~~I~~~ak~gi~VNvvD~p~~ 126 (223)
T 3dfz_A 101 DQAVNKFVKQHIKNDQLVNMASSFSD 126 (223)
T ss_dssp CTHHHHHHHHHSCTTCEEEC-----C
T ss_pred CHHHHHHHHHHHhCCCEEEEeCCccc
Confidence 44434445565568999888776543
No 322
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=21.99 E-value=2.3e+02 Score=25.53 Aligned_cols=37 Identities=11% Similarity=0.125 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEc
Q psy15555 345 DMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHA 383 (488)
Q Consensus 345 ~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~ 383 (488)
.+++.++++|++ +.-......+++.+.++. .|++|..
T Consensus 54 ~v~~~A~~~gIp--v~~~~~~~~~~~~~~l~~~~~Dliv~~ 92 (318)
T 3q0i_A 54 PVKTLALEHNVP--VYQPENFKSDESKQQLAALNADLMVVV 92 (318)
T ss_dssp HHHHHHHHTTCC--EECCSCSCSHHHHHHHHTTCCSEEEES
T ss_pred HHHHHHHHcCCC--EEccCcCCCHHHHHHHHhcCCCEEEEe
Confidence 456666666664 222222333445454443 3444443
No 323
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=21.71 E-value=3.1e+02 Score=24.64 Aligned_cols=12 Identities=0% Similarity=-0.003 Sum_probs=8.1
Q ss_pred HHHHHHHhcCCC
Q psy15555 345 DMQDLCKHLSLE 356 (488)
Q Consensus 345 ~l~~~~~~~~l~ 356 (488)
.+++.++++|++
T Consensus 51 pv~~~A~~~gIp 62 (317)
T 3rfo_A 51 PVKVEAEKHGIP 62 (317)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 466777777765
No 324
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=21.62 E-value=2.6e+02 Score=22.53 Aligned_cols=99 Identities=15% Similarity=0.163 Sum_probs=53.5
Q ss_pred HHHHHHHH--hcCCCCcEEEecCCChHHHHHHHHh-----Cc-EEEEcCCCCcCCccHHHHHHc-CCcEEEeCCCCC-cc
Q psy15555 344 KDMQDLCK--HLSLENNVEFKVNLPYEDMKKEFSE-----GL-IGLHAMWNEHFGIGIVECMAA-GLIMIAHKSGGP-KM 413 (488)
Q Consensus 344 ~~l~~~~~--~~~l~~~v~~~g~~~~~el~~~~~~-----ad-~~v~~s~~e~~g~~~lEa~a~-G~PvI~~~~~~~-~~ 413 (488)
+.+++.++ ++|+ .+.+.-.=..+|+.+.+.. .| +++.|..+-+.+..+.+|++. ++|+|=-..... .+
T Consensus 41 ~~l~~~a~~~~~g~--~l~~~QSN~EGeLId~Ih~a~~~~~dgIIINpgAyTHtSvAlrDAl~~v~~P~VEVHiSNi~aR 118 (176)
T 2c4w_A 41 EIMQTFVKQGNLDV--ELEFFQTNFEGEIIDKIQESVGSEYEGIIINPGAFSHTSIAIADAIMLAGKPVIEVHLTNIQAR 118 (176)
T ss_dssp HHHHHHHHHTTCCE--EEEEEECSCHHHHHHHHHHHHSSSCCEEEEECGGGGGTCHHHHHHHHTSSSCEEEEESSCGGGS
T ss_pred HHHHHHhccccCCC--EEEEEeeCcHHHHHHHHHHhccCCeeEEEECcchhccchHHHHHHHHhCCCCEEEEEecCcccc
Confidence 34444444 4443 2444433344555555443 55 677888888889999999865 899987433322 11
Q ss_pred ceeccCC--CccccceecC-CHHHHHHHHHHHHc
Q psy15555 414 DIVIEDP--ETCRNGFLAC-DEVEYAQTIKLILH 444 (488)
Q Consensus 414 eiv~~~~--~~~~~g~~~~-~~~~l~~~i~~ll~ 444 (488)
|-+++.. .....|.++. -.+...-++..++.
T Consensus 119 E~FRh~S~is~~a~GvI~G~G~~gY~lAl~al~~ 152 (176)
T 2c4w_A 119 EEFRKNSYTGAACGGVIMGFGPLGYNMALMAMVN 152 (176)
T ss_dssp CGGGTCCHHHHHSSEEEESSTTHHHHHHHHHHHH
T ss_pred cccccccccccceeEEEEecCHHHHHHHHHHHHH
Confidence 2222210 0003566665 56666666665543
No 325
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=21.55 E-value=3.8e+02 Score=23.25 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=23.8
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
..|+++- ++.+| ...++++.+..|+.+++-+..+
T Consensus 8 ~pIgvfD--SGvGG------Ltv~~~i~~~lp~~~~iy~~D~ 41 (268)
T 3out_A 8 RPIGVFD--SGIGG------LTIVKNLMSILPNEDIIYFGDI 41 (268)
T ss_dssp SCEEEEE--SSSTT------HHHHHHHHHHCTTCCEEEEECT
T ss_pred CcEEEEE--CCCCh------HHHHHHHHHHCCCCcEEEecCC
Confidence 3588874 44444 5556888888888888777665
No 326
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=21.55 E-value=66 Score=26.56 Aligned_cols=73 Identities=11% Similarity=-0.054 Sum_probs=41.5
Q ss_pred HHHHHHHHhCcEEEEcCCCCcCCc--cHHHHHH------cCCcEEEeCCCCCccceec-------cC--C-Cccccceec
Q psy15555 368 EDMKKEFSEGLIGLHAMWNEHFGI--GIVECMA------AGLIMIAHKSGGPKMDIVI-------ED--P-ETCRNGFLA 429 (488)
Q Consensus 368 ~el~~~~~~ad~~v~~s~~e~~g~--~~lEa~a------~G~PvI~~~~~~~~~eiv~-------~~--~-~~~~~g~~~ 429 (488)
..-..+...||++|.-. .++|. -++|++. .++||+.-+..+....+++ ++ + .+...-.++
T Consensus 89 ~Rk~~~~~~sda~IvlP--GG~GTl~El~e~lt~~q~g~~~kPvvll~~~g~~~~l~~~l~~~~~~Gfi~~~~~~~~~~~ 166 (191)
T 1t35_A 89 ERKAKMSELADGFISMP--GGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSS 166 (191)
T ss_dssp HHHHHHHHHCSEEEECS--CCHHHHHHHHHHHHTTSCSSCCCCEEEECGGGTTHHHHHHHHHHHHTTSSCTTHHHHEEEE
T ss_pred HHHHHHHHHCCEEEEeC--CCccHHHHHHHHHHHHHhCCCCCCEEEecCCcccchHHHHHHHHHHCCCCCHHHcCeEEEe
Confidence 34555677899766532 23443 3788995 7899999887555433321 11 0 000112234
Q ss_pred CCHHHHHHHHHHH
Q psy15555 430 CDEVEYAQTIKLI 442 (488)
Q Consensus 430 ~~~~~l~~~i~~l 442 (488)
+|++++.+.+.+.
T Consensus 167 ~~~~e~~~~l~~~ 179 (191)
T 1t35_A 167 SRPDELIEQMQNY 179 (191)
T ss_dssp SSHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHh
Confidence 5888887777653
No 327
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=21.52 E-value=2.3e+02 Score=24.93 Aligned_cols=110 Identities=13% Similarity=0.004 Sum_probs=55.2
Q ss_pred ChHHHHHHHHhCcEEEEc-CCCCcCCccHHHHHHc-CCcEEEeCCCCCccceec--------cCC----CccccceecC-
Q psy15555 366 PYEDMKKEFSEGLIGLHA-MWNEHFGIGIVECMAA-GLIMIAHKSGGPKMDIVI--------EDP----ETCRNGFLAC- 430 (488)
Q Consensus 366 ~~~el~~~~~~ad~~v~~-s~~e~~g~~~lEa~a~-G~PvI~~~~~~~~~eiv~--------~~~----~~~~~g~~~~- 430 (488)
+...-..-++.||++|.. ...|+|--.++++... ++.+|.. ..+....... ++. .....-|+-+
T Consensus 50 ptp~d~~~l~~Adlvv~~G~~lE~w~~k~~~~~~~~~~~~v~~-~~~i~l~~~~~~~~~~~~~~~~h~~~~dPHvWldp~ 128 (286)
T 3gi1_A 50 PSVNDVAAIYDADLFVYHSHTLEAWARDLDPNLKKSKVDVFEA-SKPLTLDRVKGLEDMEVTQGIDPATLYDPHTWTDPV 128 (286)
T ss_dssp CCHHHHHHHHTSSEEEESCTTTSGGGTTCCTTTTTCCCEEEET-TTTSCCCBCC---------------CBCCCGGGSHH
T ss_pred CCHHHHHHHHhCCEEEEcCCCchHHHHHHHHhccCCCcEEEEC-CCCccccccCCcccccccccccCCCCCCCceecCHH
Confidence 334555778899966654 3567665566665533 3344432 1222100000 000 0001123322
Q ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy15555 431 DEVEYAQTIKLIL-HLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQ 478 (488)
Q Consensus 431 ~~~~l~~~i~~ll-~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~ 478 (488)
+...+++.|.+.| ..||+......+|+.++.++ .+..-+++.+.+.
T Consensus 129 ~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~--L~~Ld~~~~~~l~ 175 (286)
T 3gi1_A 129 LAGEEAVNIAKELGRLDPKHKDSYTKNAKAFKKE--AEQLTEEYTQKFK 175 (286)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH--HHHHHHHHHHHHh
Confidence 5556666666544 34888888888888776654 4444444544443
No 328
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=21.52 E-value=62 Score=28.67 Aligned_cols=39 Identities=10% Similarity=-0.086 Sum_probs=22.3
Q ss_pred ccccEEEEeccCCCCCCCce-ehHHHHHHHHHHhCCCeeEE
Q psy15555 50 NVLKTVAFFHPYCNAGGGGE-RVLWTAVLALHQKYPDYKIY 89 (488)
Q Consensus 50 ~~~~rI~~~~~~~~~~gG~e-~~~~~l~~~L~~~~~~~~v~ 89 (488)
-+.|||+++.......+ -. ..+...++.+.+.+++++++
T Consensus 20 m~~MKiLII~aHP~~~S-~n~aL~~~~~~~l~~~G~eV~v~ 59 (280)
T 4gi5_A 20 FQSMKVLLIYAHPEPRS-LNGALKNFAIRHLQQAGHEVQVS 59 (280)
T ss_dssp --CCEEEEEECCSCTTS-HHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hhCCeEEEEEeCCCCcc-HHHHHHHHHHHHHHHCCCeEEEE
Confidence 34699998864433322 23 33445677888886555544
No 329
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=21.45 E-value=2.8e+02 Score=25.34 Aligned_cols=66 Identities=6% Similarity=-0.134 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh-CcEEEEcCCCCcCCccHHHHHH-cCCcEEEeCCCC
Q psy15555 341 VCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE-GLIGLHAMWNEHFGIGIVECMA-AGLIMIAHKSGG 410 (488)
Q Consensus 341 ~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~-ad~~v~~s~~e~~g~~~lEa~a-~G~PvI~~~~~~ 410 (488)
+-...|.+.+++.|+. .+....+.+.+..+-.. +|++=.+|. +.--..++++++ .|+|||.+.-..
T Consensus 91 e~~~~L~~~~~~~Gi~---~~st~~d~~svd~l~~~~v~~~KI~S~-~~~n~~LL~~va~~gkPviLstGma 158 (349)
T 2wqp_A 91 EDEIKLKEYVESKGMI---FISTLFSRAAALRLQRMDIPAYKIGSG-ECNNYPLIKLVASFGKPIILSTGMN 158 (349)
T ss_dssp HHHHHHHHHHHHTTCE---EEEEECSHHHHHHHHHHTCSCEEECGG-GTTCHHHHHHHHTTCSCEEEECTTC
T ss_pred HHHHHHHHHHHHhCCe---EEEeeCCHHHHHHHHhcCCCEEEECcc-cccCHHHHHHHHhcCCeEEEECCCC
Confidence 5557778888887763 22222344444444343 676655553 333455676555 688888876543
No 330
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=21.44 E-value=3.3e+02 Score=24.32 Aligned_cols=107 Identities=9% Similarity=0.108 Sum_probs=56.0
Q ss_pred HHHHHHHHhCcEEEEcC-CCCcCCccHHHHHHc-CCcEEEeCCCCCccceecc----------CCC-----ccccceecC
Q psy15555 368 EDMKKEFSEGLIGLHAM-WNEHFGIGIVECMAA-GLIMIAHKSGGPKMDIVIE----------DPE-----TCRNGFLAC 430 (488)
Q Consensus 368 ~el~~~~~~ad~~v~~s-~~e~~g~~~lEa~a~-G~PvI~~~~~~~~~eiv~~----------~~~-----~~~~g~~~~ 430 (488)
..-..-++.||++|... ..|.|--.+++++.. ++++|.... +. +.+.. ++. ....-|+-+
T Consensus 62 p~d~~~l~~ADlvv~~G~~lE~w~~k~~~~~~~~~~~~v~~s~-~i--~~~~~~~~~~~~~~~~~~~~~~~~DPHvWldp 138 (312)
T 2o1e_A 62 PKDIANIQDADLFVYNSEYMETWVPSAEKSMGQGHAVFVNASK-GI--DLMEGSEEEHEEHDHGEHEHSHAMDPHVWLSP 138 (312)
T ss_dssp HHHHHHHHHSSEEEESCTTTSTTHHHHHHTTCSSSCEEEETTT-TC--CCCCC----------------CCCCCGGGGSH
T ss_pred HHHHHHHhcCCEEEEcCCChHhHHHHHHHhcccCCCeEEEecC-Cc--ccccCcccccccccccccccCCCCCCCcccCH
Confidence 44456678899766543 467666667776543 345554322 22 11100 000 001123322
Q ss_pred -CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q psy15555 431 -DEVEYAQTIKLIL-HLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQP 479 (488)
Q Consensus 431 -~~~~l~~~i~~ll-~~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~~~~ 479 (488)
+...+++.|.+.| ..||+......+|+.++.++ .+..-+++.+.+..
T Consensus 139 ~n~~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~--L~~Ld~~~~~~l~~ 187 (312)
T 2o1e_A 139 VLAQKEVKNITAQIVKQDPDNKEYYEKNSKEYIAK--LQDLDKLYRTTAKK 187 (312)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH--HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH--HHHHHHHHHHHhhc
Confidence 5556666665544 34888888888888776655 44444555554443
No 331
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=21.27 E-value=1.2e+02 Score=26.08 Aligned_cols=11 Identities=9% Similarity=0.075 Sum_probs=8.5
Q ss_pred cccCEEEEcCh
Q psy15555 240 KYSDIIMVNSS 250 (488)
Q Consensus 240 ~~~d~ii~~s~ 250 (488)
..||.+.+.-+
T Consensus 108 aGAd~itvH~E 118 (246)
T 3inp_A 108 AGATSIVFHPE 118 (246)
T ss_dssp HTCSEEEECGG
T ss_pred cCCCEEEEccc
Confidence 56888888776
No 332
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=21.16 E-value=2.4e+02 Score=24.96 Aligned_cols=96 Identities=14% Similarity=0.109 Sum_probs=50.8
Q ss_pred ChHHHHHHHHhCcEEEEc-CCCCc----CCccHHHHHHcC--CcEEEeCCCCCc-cceec---cCCCccccceecC-CHH
Q psy15555 366 PYEDMKKEFSEGLIGLHA-MWNEH----FGIGIVECMAAG--LIMIAHKSGGPK-MDIVI---EDPETCRNGFLAC-DEV 433 (488)
Q Consensus 366 ~~~el~~~~~~ad~~v~~-s~~e~----~g~~~lEa~a~G--~PvI~~~~~~~~-~eiv~---~~~~~~~~g~~~~-~~~ 433 (488)
+...-..-++.||++|.. ...|. |--.+++..... .++|.... +.. ...-. ++ .....-|+-+ +..
T Consensus 56 ptp~d~~~l~~Adlvv~~G~~lE~~~~~w~~k~~~~~~~~~~~~~v~~s~-gi~~~~~~~~~~~~-~~dPHvWldp~~~~ 133 (294)
T 3hh8_A 56 PLPEDAEKTSNADVIFYNGINLEDGGQAWFTKLVKNAQKTKNKDYFAVSD-GIDVIYLEGASEKG-KEDPHAWLNLENGI 133 (294)
T ss_dssp CCHHHHHHHHHCSEEEECCTTSSCSTTSHHHHHHHHTTCCBTTTEEETTT-TSCCCBSTTCCSTT-CBCCCGGGSHHHHH
T ss_pred CCHHHHHHHHhCCEEEEcCCCccchHHHHHHHHHHhccccCCceEEEccC-CcccccCCCccCCC-CCCCceeCCHHHHH
Confidence 334555778889966654 45666 555566665443 56665432 221 01100 00 0001223332 556
Q ss_pred HHHHHHHHHH-ccCHHHHHHHHHHHHHHHhh
Q psy15555 434 EYAQTIKLIL-HLSQDTKTRISQNAVSSVDR 463 (488)
Q Consensus 434 ~l~~~i~~ll-~~~~~~~~~~~~~a~~~~~~ 463 (488)
.+++.|.+.| ..||+......+|+.++.++
T Consensus 134 ~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~ 164 (294)
T 3hh8_A 134 IYSKNIAKQLIAKDPKNKETYEKNLKAYVAK 164 (294)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence 6666666544 34888888888888766544
No 333
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=21.09 E-value=4.8e+02 Score=23.81 Aligned_cols=105 Identities=10% Similarity=-0.021 Sum_probs=61.1
Q ss_pred eeccCCCCChHHHHHHHHHhHHhhhhhccCceEEEEEecC-CCC-------CcHHHHHHHHHHHHhcCCCCcEEEecCCC
Q psy15555 295 VAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGST-RNE-------EDEVCVKDMQDLCKHLSLENNVEFKVNLP 366 (488)
Q Consensus 295 ~g~~~~~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~-~~~-------~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 366 (488)
++........+.+++....+++.. . .++-.+.. |.. ...+-.+.+++.+++.|++--.... +
T Consensus 110 IAgpcs~es~e~a~~~a~~~k~aG-----a--~~vr~q~fKprTs~~~f~glg~egl~~l~~~~~e~Gl~~~te~~---d 179 (350)
T 1vr6_A 110 IAGPCSVEGREMLMETAHFLSELG-----V--KVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEAL---G 179 (350)
T ss_dssp EEECSBCCCHHHHHHHHHHHHHTT-----C--CEEECBSCCCCCSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECS---S
T ss_pred EEeCCCcCCHHHHHHHHHHHHHcC-----C--CeeeeeEEeCCCChHhhcCCCHHHHHHHHHHHHHcCCcEEEEeC---C
Confidence 333344677888888888887754 2 22222211 110 1246678899999999985222222 3
Q ss_pred hHHHHHHHHhCcEEEEcCCCCcCCccHH-HHHHcCCcEEEeCCCC
Q psy15555 367 YEDMKKEFSEGLIGLHAMWNEHFGIGIV-ECMAAGLIMIAHKSGG 410 (488)
Q Consensus 367 ~~el~~~~~~ad~~v~~s~~e~~g~~~l-Ea~a~G~PvI~~~~~~ 410 (488)
...+..+-..+|++=.+|.. .-...++ |....|+||+.++...
T Consensus 180 ~~~~~~l~~~vd~lkIgAr~-~~n~~LL~~va~~~kPVilk~G~~ 223 (350)
T 1vr6_A 180 EDDLPKVAEYADIIQIGARN-AQNFRLLSKAGSYNKPVLLKRGFM 223 (350)
T ss_dssp GGGHHHHHHHCSEEEECGGG-TTCHHHHHHHHTTCSCEEEECCTT
T ss_pred HHHHHHHHHhCCEEEECccc-ccCHHHHHHHHccCCcEEEcCCCC
Confidence 34444444448988777732 2233345 4555799999987643
No 334
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=21.05 E-value=4.5e+02 Score=23.53 Aligned_cols=36 Identities=19% Similarity=0.026 Sum_probs=19.6
Q ss_pred HHHHhhhcCCcEEEecCCccchhhhh--hhhCCCeeEE
Q psy15555 151 GVEALLSFQPDIYIDTMGYAFTYPLF--SYIGGSKVAC 186 (488)
Q Consensus 151 ~~~~l~~~~pDiii~~~~~~~~~~~~--~~~~~~~~v~ 186 (488)
...++...++|+|+..++...-...+ ....|+++++
T Consensus 78 ~~ell~~~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~ 115 (350)
T 4had_A 78 YEEMLASDVIDAVYIPLPTSQHIEWSIKAADAGKHVVC 115 (350)
T ss_dssp HHHHHHCSSCSEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred HHHHhcCCCCCEEEEeCCCchhHHHHHHHHhcCCEEEE
Confidence 34567777899776444333322222 2356777655
No 335
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=20.92 E-value=4.4e+02 Score=23.38 Aligned_cols=102 Identities=10% Similarity=0.048 Sum_probs=58.3
Q ss_pred CCChHHHHHHHHHhHHhhhhhccCceEEEEEe------cCCC----CCc-HHHHHHHHHHHHhcCCCCcEEEecCCChHH
Q psy15555 301 EKDHPLQLRAMYQLRQIISEELWDNLKLIFIG------STRN----EED-EVCVKDMQDLCKHLSLENNVEFKVNLPYED 369 (488)
Q Consensus 301 ~k~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG------~~~~----~~~-~~~~~~l~~~~~~~~l~~~v~~~g~~~~~e 369 (488)
-++.+.+++..+++++.... -.+..++-+ +... .-. ++-.+.+++.+++.|++ .+....+...
T Consensus 51 ies~e~~~~~A~~lk~~~~~---~~~~~v~k~~f~KapRTs~~sf~Glg~~~GL~~L~~~~~e~GLp---v~Tev~D~~~ 124 (298)
T 3fs2_A 51 METRDHAFEMAGRLKEMTDK---LGIGLVYKSSFDKANRTSLKAARGIGLEKALEVFSDLKKEYGFP---VLTDIHTEEQ 124 (298)
T ss_dssp CCCHHHHHHHHHHHHHHHHH---HTCCEEEECBCCCCC---------CCHHHHHHHHHHHHHHHCCC---EEEECCSHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH---cCCcEEEEcccccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCe---EEEEeCCHHH
Confidence 34677777777777654210 023344433 1100 001 25557788888899885 2233334455
Q ss_pred HHHHHHhCcEEEEcCC-CCcCCccHHHHHHcCCcEEEeCCC
Q psy15555 370 MKKEFSEGLIGLHAMW-NEHFGIGIVECMAAGLIMIAHKSG 409 (488)
Q Consensus 370 l~~~~~~ad~~v~~s~-~e~~g~~~lEa~a~G~PvI~~~~~ 409 (488)
+..+-..+|++-.+|. ...++ -+-|+...|+||+.++..
T Consensus 125 v~~l~~~vd~lkIgA~~~~n~~-LLr~va~~gkPVilK~Gm 164 (298)
T 3fs2_A 125 CAAVAPVVDVLQIPAFLCRQTD-LLIAAARTGRVVNVKKGQ 164 (298)
T ss_dssp HHHHTTTCSEEEECGGGTTCHH-HHHHHHHTTSEEEEECCT
T ss_pred HHHHHhhCCEEEECccccCCHH-HHHHHHccCCcEEEeCCC
Confidence 5555556888877773 33333 345677889999998764
No 336
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=20.84 E-value=2.3e+02 Score=24.71 Aligned_cols=118 Identities=8% Similarity=-0.037 Sum_probs=66.4
Q ss_pred ChHHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEe-cCCChHHHHHHHHhCcEEE
Q psy15555 303 DHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFK-VNLPYEDMKKEFSEGLIGL 381 (488)
Q Consensus 303 ~~~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~-g~~~~~el~~~~~~ad~~v 381 (488)
|.+.+++.+++. .+.-+++++-|.+ ..+++.+.++++|+. .+.+. +..+.+.+..+.+.++-|+
T Consensus 111 g~e~f~~~~~~a----------Gvdgvii~Dlp~e----e~~~~~~~~~~~gl~-~i~liaP~t~~eri~~i~~~~~gfv 175 (267)
T 3vnd_A 111 GIDEFYTKAQAA----------GVDSVLIADVPVE----ESAPFSKAAKAHGIA-PIFIAPPNADADTLKMVSEQGEGYT 175 (267)
T ss_dssp CHHHHHHHHHHH----------TCCEEEETTSCGG----GCHHHHHHHHHTTCE-EECEECTTCCHHHHHHHHHHCCSCE
T ss_pred hHHHHHHHHHHc----------CCCEEEeCCCCHh----hHHHHHHHHHHcCCe-EEEEECCCCCHHHHHHHHHhCCCcE
Confidence 556566555543 4667788887754 237788889999975 34344 4456788999999998444
Q ss_pred Ec-CCCCcCCc------cHHHHHH-----cCCcEEEeCCCCCccc---eeccCCCccccceecCCHHHHHHHHHH
Q psy15555 382 HA-MWNEHFGI------GIVECMA-----AGLIMIAHKSGGPKMD---IVIEDPETCRNGFLACDEVEYAQTIKL 441 (488)
Q Consensus 382 ~~-s~~e~~g~------~~lEa~a-----~G~PvI~~~~~~~~~e---iv~~~~~~~~~g~~~~~~~~l~~~i~~ 441 (488)
+. |.....|. .+.|.+. ..+||++.---...++ .+..+ -.|+++.+ .+.+.+.+
T Consensus 176 Y~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~vGfGI~~~e~~~~~~~~g----ADgvVVGS--aiv~~i~~ 244 (267)
T 3vnd_A 176 YLLSRAGVTGTESKAGEPIENILTQLAEFNAPPPLLGFGIAEPEQVRAAIKAG----AAGAISGS--AVVKIIEA 244 (267)
T ss_dssp EESCCCCCC--------CHHHHHHHHHTTTCCCEEECSSCCSHHHHHHHHHTT----CSEEEECH--HHHHHHHH
T ss_pred EEEecCCCCCCccCCcHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcC----CCEEEECH--HHHHHHHH
Confidence 43 44433332 2233322 3788887522111211 23333 56777753 45554443
No 337
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=20.80 E-value=2.9e+02 Score=21.22 Aligned_cols=109 Identities=10% Similarity=0.076 Sum_probs=52.6
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh--CcEEEEcC-CCCcCCccHHHHHHc--
Q psy15555 325 NLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE--GLIGLHAM-WNEHFGIGIVECMAA-- 399 (488)
Q Consensus 325 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~--ad~~v~~s-~~e~~g~~~lEa~a~-- 399 (488)
..+++|+.+.+ ...+.+++..++.+....+.... +.++....+.. .|+++.-. ..+.-|..+++.+..
T Consensus 25 ~~~ILivdd~~-----~~~~~l~~~L~~~~~~~~v~~~~--~~~~al~~l~~~~~dlvilD~~l~~~~g~~l~~~lr~~~ 97 (164)
T 3t8y_A 25 VIRVLVVDDSA-----FMRMVLKDIIDSQPDMKVVGFAK--DGLEAVEKAIELKPDVITMDIEMPNLNGIEALKLIMKKA 97 (164)
T ss_dssp CEEEEEECSCH-----HHHHHHHHHHHTSTTEEEEEEES--SHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHS
T ss_pred ccEEEEEcCCH-----HHHHHHHHHHhcCCCeEEEEecC--CHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 45677776553 44456666665543111111222 33555554433 45555543 233334555554432
Q ss_pred CCcEEEeCCCCCc-----cceeccCCCccccceecC--C---------HHHHHHHHHHHHc
Q psy15555 400 GLIMIAHKSGGPK-----MDIVIEDPETCRNGFLAC--D---------EVEYAQTIKLILH 444 (488)
Q Consensus 400 G~PvI~~~~~~~~-----~eiv~~~~~~~~~g~~~~--~---------~~~l~~~i~~ll~ 444 (488)
.+|+|........ .+..+.+ ..+++.. + .+++.+++.+.+.
T Consensus 98 ~~~ii~~s~~~~~~~~~~~~~~~~g----a~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~ 154 (164)
T 3t8y_A 98 PTRVIMVSSLTEEGAAITIEALRNG----AVDFITKPHGSISLTFRQVAPELLEKIRQAMN 154 (164)
T ss_dssp CCEEEEEESSCCTTCHHHHHHHHTT----CCEEEECSSSSSCGGGGGGHHHHHHHHHHHTT
T ss_pred CceEEEEecCCccchHHHHHHHHcC----cCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhC
Confidence 3566553221111 0223333 4566654 4 5778888887776
No 338
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=20.58 E-value=5.6e+02 Score=25.19 Aligned_cols=108 Identities=7% Similarity=-0.008 Sum_probs=55.0
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcE-------------EE---ecCCChHHHHHHHHhCcE-EEEcCCCCcC
Q psy15555 327 KLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNV-------------EF---KVNLPYEDMKKEFSEGLI-GLHAMWNEHF 389 (488)
Q Consensus 327 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v-------------~~---~g~~~~~el~~~~~~ad~-~v~~s~~e~~ 389 (488)
-++++|.+.... . +++.++++.++++--. .+ .|..........+..||+ +..++.....
T Consensus 217 pvIl~G~g~~~~---~-~~l~~lae~~~~Pv~~t~~g~g~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~ 292 (590)
T 1ybh_A 217 PVLYVGGGCLNS---S-DELGRFVELTGIPVASTLMGLGSYPADDELSLHMLGMHGTVYANYAVEHSDLLLAFGVRFDDR 292 (590)
T ss_dssp EEEEECGGGTTC---H-HHHHHHHHHHCCCEEECTTTTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCHH
T ss_pred cEEEECcccccC---H-HHHHHHHHHhCCCEEEchhhcCcCCCCCchhcCCcccccCHHHHHHHHhCCEEEEEcCCCCcc
Confidence 578899875432 2 8899999998875111 11 222223456678899994 4455432110
Q ss_pred CccHHHHHHcCCcEEEeCCCCCccceeccCCCccccc-eecCCHHHHHHHHHHHHc
Q psy15555 390 GIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNG-FLACDEVEYAQTIKLILH 444 (488)
Q Consensus 390 g~~~lEa~a~G~PvI~~~~~~~~~eiv~~~~~~~~~g-~~~~~~~~l~~~i~~ll~ 444 (488)
-..-++...-+..+|.-+.... ++-... ... .+..|..++.+++.+.+.
T Consensus 293 ~~~~~~~~~~~~~~i~id~d~~--~~~~~~----~~~~~i~~d~~~~l~~L~~~l~ 342 (590)
T 1ybh_A 293 VTGKLEAFASRAKIVHIDIDSA--EIGKNK----TPHVSVCGDVKLALQGMNKVLE 342 (590)
T ss_dssp HHSSGGGTTTTSEEEEEESCTT--TTTSSS----CCSEEEESCHHHHHHHHHHHHH
T ss_pred ccCcccccCCCCeEEEEECCHH--HhCCCc----CCCeEEecCHHHHHHHHHHhhh
Confidence 0000111222455666554322 221111 112 233488887777766554
No 339
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=20.53 E-value=2.5e+02 Score=24.84 Aligned_cols=74 Identities=9% Similarity=0.021 Sum_probs=41.1
Q ss_pred HHhCc-EEEEcCCCCcCCcc-HHHHHHcCCcEEEeCCCCCcccee-ccCCCccccceec-CCHHHHHHHHHHHHccCHHH
Q psy15555 374 FSEGL-IGLHAMWNEHFGIG-IVECMAAGLIMIAHKSGGPKMDIV-IEDPETCRNGFLA-CDEVEYAQTIKLILHLSQDT 449 (488)
Q Consensus 374 ~~~ad-~~v~~s~~e~~g~~-~lEa~a~G~PvI~~~~~~~~~eiv-~~~~~~~~~g~~~-~~~~~l~~~i~~ll~~~~~~ 449 (488)
...|| +++.++....+|.. +.+....|.|+|.-|..... ..- ... ...+.+ .+.++....+.+.+. -.+.
T Consensus 209 ~~~~DlllviGTSl~V~Pa~~l~~~~~~~~~~v~IN~~~~~-~~~~~~~----~~d~~i~~~~~~~l~~l~~~l~-~~~~ 282 (289)
T 1q1a_A 209 HPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVG-DFKANKR----PTDLIVHQYSDEFAEQLVEELG-WQED 282 (289)
T ss_dssp -CCCCEEEEESCCCCEETTTHHHHHSCTTSEEEEESSSCCT-HHHHSCC----TTCEEECCCHHHHHHHHHHHHT-CHHH
T ss_pred hccCCEEEEEccCCChhhHHHHHHHHhcCCCEEEEECCCcc-cCCCCCc----ceeEEEeCCHHHHHHHHHHHcC-CHHH
Confidence 56899 44555544444443 45555569999988764331 110 111 123444 388888888777776 5554
Q ss_pred HHHH
Q psy15555 450 KTRI 453 (488)
Q Consensus 450 ~~~~ 453 (488)
.+++
T Consensus 283 ~~~~ 286 (289)
T 1q1a_A 283 FEKI 286 (289)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 340
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=20.52 E-value=2.7e+02 Score=25.83 Aligned_cols=66 Identities=14% Similarity=0.039 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHHh-CcEEEEcCCCCcCCccHHHHHH-cCCcEEEeCCCC
Q psy15555 341 VCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSE-GLIGLHAMWNEHFGIGIVECMA-AGLIMIAHKSGG 410 (488)
Q Consensus 341 ~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~~-ad~~v~~s~~e~~g~~~lEa~a-~G~PvI~~~~~~ 410 (488)
+-..+|.+.+++.|+. .+....+.+.+..+-.. +|++=.+|. +.--..++++++ .|+|||.+.-..
T Consensus 101 e~~~~L~~~~~~~Gi~---~~stpfD~~svd~l~~~~vd~~KIgS~-~~~N~pLL~~va~~gKPViLStGma 168 (385)
T 1vli_A 101 EWILPLLDYCREKQVI---FLSTVCDEGSADLLQSTSPSAFKIASY-EINHLPLLKYVARLNRPMIFSTAGA 168 (385)
T ss_dssp GGHHHHHHHHHHTTCE---EECBCCSHHHHHHHHTTCCSCEEECGG-GTTCHHHHHHHHTTCSCEEEECTTC
T ss_pred HHHHHHHHHHHHcCCc---EEEccCCHHHHHHHHhcCCCEEEECcc-cccCHHHHHHHHhcCCeEEEECCCC
Confidence 4447777777777752 22233344444333332 566655552 333445676554 588888876543
No 341
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2
Probab=20.38 E-value=3.3e+02 Score=22.05 Aligned_cols=109 Identities=15% Similarity=0.031 Sum_probs=59.1
Q ss_pred CCChHHH-HHHHHHhHHhhhhhccCceEEEEEecC---CCCCcHHHHHHHHHHHHhcCCCCcEEEecCCCh---HHHH--
Q psy15555 301 EKDHPLQ-LRAMYQLRQIISEELWDNLKLIFIGST---RNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPY---EDMK-- 371 (488)
Q Consensus 301 ~k~~~~l-l~a~~~l~~~~~~~~~~~~~l~ivG~~---~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~---~el~-- 371 (488)
..|.+.+ .++...+++.+ |+++|.++=.. ....+++..+.+..+.+. .+.|..+...+. +.+.
T Consensus 52 a~G~D~~aae~vl~lk~~y-----~~i~L~~v~Pf~~~~~~w~~~~~~~y~~ll~~---aD~v~~l~~~~y~~~~~~~~r 123 (181)
T 2nx2_A 52 QLGVELWAAEAAYDLQEEY-----PDLKVAVITPFYEQEKNWKEPNKEQYEAVLAQ---ADYEASLTHRPYESPLQFKQK 123 (181)
T ss_dssp CTTHHHHHHHHHHTTTTTC-----TTCEEEEEESSBCTTTTSCHHHHHHHHHHHHH---CSEEEESSSSBCCCHHHHHHH
T ss_pred CccHHHHHHHHHHHhcccc-----CCceEEEEecccchhhCCCHHHHHHHHHHHHh---CCeEEecccCCCCCHHHHHHH
Confidence 3466654 56666666666 78888876532 222233444555555554 356666665442 2222
Q ss_pred --HHHHhCcEEEEcCC--CCcCCccHHHHHHc-----CCcEEEeCCCCCccceecc
Q psy15555 372 --KEFSEGLIGLHAMW--NEHFGIGIVECMAA-----GLIMIAHKSGGPKMDIVIE 418 (488)
Q Consensus 372 --~~~~~ad~~v~~s~--~e~~g~~~lEa~a~-----G~PvI~~~~~~~~~eiv~~ 418 (488)
-+...||..+.--. .+++.--.++.+.. |.||..-+..+.. +++++
T Consensus 124 n~~mvd~sD~liavyDg~~~GgT~~~v~~A~~~~~~~~~pv~~I~~~~l~-~~~~~ 178 (181)
T 2nx2_A 124 NQFFIDKSDGLLLLYDPEKEGSPKYMLGTAEKRREQDGYPIYFITMDDLR-VTVEE 178 (181)
T ss_dssp HHHHHHHSSEEEEECCTTTCCTTHHHHHHHHHHHHHHCCCEEEECHHHHH-HHHHC
T ss_pred HHHHHHHCCEEEEEEcCCCCCCHHHHHHHHHHhccccCCeEEEEcHHHHH-HHHhc
Confidence 25778995544332 23333334444433 7999887665553 55543
No 342
>4ax2_A RAP1B; toxin, resistance protein, helical fold, S-SAD phasing; 1.88A {Serratia marcescens}
Probab=20.32 E-value=2.5e+02 Score=21.77 Aligned_cols=50 Identities=6% Similarity=0.002 Sum_probs=39.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHH--hhcCHHHHHHHHHHHHHHhhhh
Q psy15555 434 EYAQTIKLILHLSQDTKTRISQNAVSSV--DRFSMEEFKNGFLTFTQPLFKV 483 (488)
Q Consensus 434 ~l~~~i~~ll~~~~~~~~~~~~~a~~~~--~~~s~~~~~~~~~~~~~~~~~~ 483 (488)
.|+..|.+....+++..+..+..+.... ..|++|..-+.+..++++.+.+
T Consensus 41 VLA~CiA~aY~~d~~~~~DA~sSasAllEwt~yD~E~~~~ai~~LV~kYLar 92 (142)
T 4ax2_A 41 ALSRCLAQVSDSDKAFSLDAARTANAMREWMPFDIESGDEKINVLIDKYKSR 92 (142)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHGGGSCBCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccCchhhHhHHHHHHHHHHhccCChhhCcHHHHHHHHHHHhc
Confidence 3677788887646777777777777666 7899999988899999988774
No 343
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=20.28 E-value=3.8e+02 Score=22.61 Aligned_cols=56 Identities=9% Similarity=0.124 Sum_probs=30.9
Q ss_pred HHHHHHHHHhHHhhhhhccCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCCcEEEecCCChHHHHHHHH
Q psy15555 305 PLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFS 375 (488)
Q Consensus 305 ~~ll~a~~~l~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~el~~~~~ 375 (488)
..+++++.+.++.. . ++-++|....- ..++.+.+-+++ ++......+.+|+...+.
T Consensus 93 ~Dil~aL~~a~~~~-----~--kIavVg~~~~~------~~~~~i~~ll~~--~i~~~~~~~~ee~~~~i~ 148 (225)
T 2pju_A 93 YDVLQFLAKAGKLT-----S--SIGVVTYQETI------PALVAFQKTFNL--RLDQRSYITEEDARGQIN 148 (225)
T ss_dssp HHHHHHHHHTTCTT-----S--CEEEEEESSCC------HHHHHHHHHHTC--CEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-----C--cEEEEeCchhh------hHHHHHHHHhCC--ceEEEEeCCHHHHHHHHH
Confidence 45677777775542 2 55566654322 445555555554 366666656677665444
No 344
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=20.27 E-value=3.8e+02 Score=22.30 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=20.5
Q ss_pred cEEEEeccCCCCCCCceehHHHHHHHHHHhCCCeeEEEEeCC
Q psy15555 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (488)
Q Consensus 53 ~rI~~~~~~~~~~gG~e~~~~~l~~~L~~~~~~~~v~~~~~~ 94 (488)
|||+++.. |....+..+++++.+...++++..+.+.
T Consensus 4 ~ki~vl~s------G~g~~~~~~l~~l~~~~l~~~I~~Vit~ 39 (212)
T 3av3_A 4 KRLAVFAS------GSGTNFQAIVDAAKRGDLPARVALLVCD 39 (212)
T ss_dssp EEEEEECC------SSCHHHHHHHHHHHTTCCCEEEEEEEES
T ss_pred cEEEEEEE------CCcHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 58877531 3334677778888775324565444333
No 345
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=20.26 E-value=2.9e+02 Score=20.99 Aligned_cols=61 Identities=10% Similarity=0.028 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCC-CcEE-Ee-cCCChHHHHHHH---HhCcEEEEcCCCCc-----CCccHHHH--HHcCCcEEEe
Q psy15555 344 KDMQDLCKHLSLE-NNVE-FK-VNLPYEDMKKEF---SEGLIGLHAMWNEH-----FGIGIVEC--MAAGLIMIAH 406 (488)
Q Consensus 344 ~~l~~~~~~~~l~-~~v~-~~-g~~~~~el~~~~---~~ad~~v~~s~~e~-----~g~~~lEa--~a~G~PvI~~ 406 (488)
+++.+.+++.|+. -... .. |. +.+++.++. ..+|++|.++...+ +| ++.|. ..+.|||+.-
T Consensus 82 ~~~~~~~~~~g~~~~~~~v~~~g~-~~~~I~~~~a~~~~~DlIV~G~~g~~~~~~~~G-s~~~~vl~~a~~PVlvV 155 (156)
T 3fg9_A 82 AEYVQLAEQRGVNQVEPLVYEGGD-VDDVILEQVIPEFKPDLLVTGADTEFPHSKIAG-AIGPRLARKAPISVIVV 155 (156)
T ss_dssp HHHHHHHHHHTCSSEEEEEEECSC-HHHHHHHTHHHHHCCSEEEEETTCCCTTSSSCS-CHHHHHHHHCSSEEEEE
T ss_pred HHHHHHHHHcCCCceEEEEEeCCC-HHHHHHHHHHHhcCCCEEEECCCCCCccceeec-chHHHHHHhCCCCEEEe
Confidence 4445555566663 1222 23 43 556777763 67887777764222 12 23333 3457888753
Done!