RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15555
(488 letters)
>gnl|CDD|99978 cd03806, GT1_ALG11_like, This family is most closely related to the
GT1 family of glycosyltransferases. ALG11 in yeast is
involved in adding the final 1,2-linked Man to the
Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of
the ER. The deletion analysis of ALG11 was shown to
block the early steps of core biosynthesis that takes
place on the cytoplasmic face of the ER and lead to a
defect in the assembly of lipid-linked oligosaccharides.
Length = 419
Score = 638 bits (1649), Expect = 0.0
Identities = 227/419 (54%), Positives = 294/419 (70%), Gaps = 1/419 (0%)
Query: 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNI 112
TV FFHPYCNAGGGGERVLW AV AL ++YP+ + IYTGD+DA+P EI+++ RFNI
Sbjct: 1 NTVGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNI 60
Query: 113 VLPDQVINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFT 172
L I F L RK VEAS YP FTLLGQ++GSMILG+EALL PDI+IDTMGY FT
Sbjct: 61 ELDRPRIVFFLLKYRKLVEASTYPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFT 120
Query: 173 YPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFA 232
YPL +GG V Y+HYPTI+ +ML +V R ++NNS +A +P+L+ KL YY++FA
Sbjct: 121 YPLVRLLGGCPVGAYVHYPTISTDMLQKVRSREASYNNSATIARSPVLSKAKLLYYRLFA 180
Query: 233 LLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKI 292
LY G ++D++MVNS+WT H+ LW K +YPPCD E+L K+ + +I
Sbjct: 181 FLYGLAGSFADVVMVNSTWTRNHIRSLWKRNTKPSIVYPPCDVEELLKLPLDEKTRENQI 240
Query: 293 ISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKH 352
+S+AQFRPEK+HPLQLRA +L + + EE+ + +KL+ IGS RNE+DE V+D++ L K
Sbjct: 241 LSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKE 300
Query: 353 LSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPK 412
L LE+ VEF VN P+E++ +E S IGLH MWNEHFGIG+VE MAAGLI +AH SGGP
Sbjct: 301 LGLEDKVEFVVNAPFEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL 360
Query: 413 MDIVIEDPETCRNGFLACDEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKN 471
+DIV+ GFLA EYA+ I+ IL LS++ + RI + A SSV RFS EEF+
Sbjct: 361 LDIVVPWDGG-PTGFLASTAEEYAEAIEKILSLSEEERLRIRRAARSSVKRFSDEEFER 418
>gnl|CDD|215511 PLN02949, PLN02949, transferase, transferring glycosyl groups.
Length = 463
Score = 484 bits (1248), Expect = e-169
Identities = 198/474 (41%), Positives = 280/474 (59%), Gaps = 19/474 (4%)
Query: 10 VMWLVFL-FYSILALLLLSIIVLPLSVLLFKYYVSKKRKSYNVLKTVAFFHPYCNAGGGG 68
+WL+ + + LLL++I + L R + + V FFHPY N GGGG
Sbjct: 2 AIWLILYHLLTSIVLLLVAIALSVL------------RARRSRKRAVGFFHPYTNDGGGG 49
Query: 69 ERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYRRK 128
ERVLW AV A+ ++ PD IYTGD DASP + RA RF + L V+L +RK
Sbjct: 50 ERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSLAARARDRFGVELL-SPPKVVHLRKRK 108
Query: 129 FVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYI 188
++E YP FT++GQS+GS+ L EAL F P + DT GYAFTYPL + + G KV CY
Sbjct: 109 WIEEETYPRFTMIGQSLGSVYLAWEALCKFTPLYFFDTSGYAFTYPL-ARLFGCKVVCYT 167
Query: 189 HYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVN 248
HYPTI+ +M++RV R +NN +A + L++ K+ YY+ FA +Y VG+ + + MVN
Sbjct: 168 HYPTISSDMISRVRDRSSMYNNDASIARSFWLSTCKILYYRAFAWMYGLVGRCAHLAMVN 227
Query: 249 SSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQL 308
SSWT+ H+ LW + ++YPPCDT L+ + +++ P IISVAQFRPEK H LQL
Sbjct: 228 SSWTKSHIEALWRIPERIKRVYPPCDTSGLQALPLERSEDPPYIISVAQFRPEKAHALQL 287
Query: 309 RAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYE 368
A + + ++ KL F+GS RN+EDE ++ ++D K L L+ +VEF N+ Y
Sbjct: 288 EAFALALEKLDADV-PRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYR 346
Query: 369 DMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVI-EDPETCRNGF 427
D+ + + GLH+M +EHFGI +VE MAAG + IAH S GPKMDIV+ ED + + GF
Sbjct: 347 DLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQ--QTGF 404
Query: 428 LACDEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTFTQPLF 481
LA EYA I +L + + + I+ A +RFS + F F +P+
Sbjct: 405 LATTVEEYADAILEVLRMRETERLEIAAAARKRANRFSEQRFNEDFKDAIRPIL 458
>gnl|CDD|99977 cd03805, GT1_ALG2_like, This family is most closely related to the
GT1 family of glycosyltransferases. ALG2, a
1,3-mannosyltransferase, in yeast catalyzes the
mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate
and Man(1)GlcNAc(2)-dolichol diphosphate to form
Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of
this enzyme causes an abnormal accumulation of
Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol,
which is associated with a type of congenital disorders
of glycosylation (CDG), designated CDG-Ii, in humans.
Length = 392
Score = 99 bits (250), Expect = 6e-23
Identities = 114/445 (25%), Positives = 185/445 (41%), Gaps = 85/445 (19%)
Query: 53 KTVAFFHPYCNAG-GGGERVLWTAVLALHQKYPDYKIYIYTGDVDAS--PSEIIKRAHQR 109
VAF HP G GG ER++ A LAL + +++ IYT D S E
Sbjct: 1 LRVAFIHPDL--GIGGAERLVVDAALALQSR--GHEVTIYTSHHDPSHCFEETK------ 50
Query: 110 FNIVLPDQVINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSF---QPDIYI-D 165
+ LP +V R ++ S++ F +L + M+ LL + D++I D
Sbjct: 51 -DGTLPVRV-------RGDWLPRSIFGRFHILCAYL-RMLYLALYLLLLPDEKYDVFIVD 101
Query: 166 TMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKL 225
+ + PL SK+ Y H+P Q +A + K
Sbjct: 102 QV--SACVPLLKLFSPSKILFYCHFP-------------------DQLLAQRG--SLLKR 138
Query: 226 FYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYK---LYPPCDTEDLKKIT 282
Y K F L +D I+VNS++T + + L +YP DT+ + +
Sbjct: 139 LYRKPFDWLEEFTTGMADKIVVNSNFTASVFKKTFP-SLAKNPREVVYPCVDTDSFESTS 197
Query: 283 HSKTDGPVKI-------ISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGS-- 333
G + +S+ +F +K+ L + A L+ ++E + N++L+ G
Sbjct: 198 EDPDPGLLIPKSGKKTFLSINRFERKKNIALAIEAFAILKDKLAE--FKNVRLVIAGGYD 255
Query: 334 TRNEEDEVCVKDMQDLC-KHLSLENNVEFKVNLPYEDMKKE--FSEGLIGLHAMWNEHFG 390
R E+ ++++Q L + L LE+ V F ++ D +KE S L+ NEHFG
Sbjct: 256 PRVAENVEYLEELQRLAEELLLLEDQVIFLPSIS--DSQKELLLSSARALLYTPSNEHFG 313
Query: 391 IGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRN---GFLACD--EVEYAQTIKLILHL 445
I +E M AG +IA SGGP ET + GFL C+ E+A+ + + +
Sbjct: 314 IVPLEAMYAGKPVIACNSGGPL--------ETVVDGETGFL-CEPTPEEFAEAMLKLAN- 363
Query: 446 SQDTKTRISQNAVSSV-DRFSMEEF 469
D R+ V ++FS E F
Sbjct: 364 DPDLADRMGAAGRKRVKEKFSTEAF 388
>gnl|CDD|223515 COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer
membrane].
Length = 381
Score = 89.6 bits (221), Expect = 2e-19
Identities = 64/367 (17%), Positives = 126/367 (34%), Gaps = 26/367 (7%)
Query: 118 VINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFS 177
V+ R + + +G +L + ++ + + L
Sbjct: 21 VLELAKALRLLGRGHEVLVIAPEKLEGLGIEVLRLPSVSLPLLIVRLRPALLRLLLLLKR 80
Query: 178 YIGGSKVACYIHYPTITKEMLTRVARR------VITHNNSQRVANNPILTSFKLFYYKVF 231
+ + + + + + V H R+ P L +
Sbjct: 81 LLPYDIIHAHSLLLAPGGLLALLLLKLLGIPLVVTLHGLIPRILLLPRLLLLLGLLRLLL 140
Query: 232 ALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITH--SKTDGP 289
L + +D ++ S +E + L K + DTE G
Sbjct: 141 KRLKKALRLLADRVIAVSPALKELLEALGV-PNKIVVIPNGIDTEKFAPARIGLLPEGGK 199
Query: 290 VKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDL 349
++ V + PEK L + A +L++ ++KL+ +G +E ++ L
Sbjct: 200 FVVLYVGRLDPEKGLDLLIEAAAKLKKRG-----PDIKLVIVGDGPERREE-----LEKL 249
Query: 350 CKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSG 409
K L LE+NV+F +P E++ + + + + +E FG+ ++E MAAG +IA G
Sbjct: 250 AKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVG 309
Query: 410 GPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSME 467
G ++V + G L D E A ++ +L + + + FS E
Sbjct: 310 GIP-EVVEDG----ETGLLVPPGDVEELADALEQLLEDPELREELGEAARERVEEEFSWE 364
Query: 468 EFKNGFL 474
L
Sbjct: 365 RIAEQLL 371
>gnl|CDD|99974 cd03801, GT1_YqgM_like, This family is most closely related to the
GT1 family of glycosyltransferases and named after YqgM
in Bacillus licheniformis about which little is known.
Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The
acceptor molecule can be a lipid, a protein, a
heterocyclic compound, or another carbohydrate residue.
This group of glycosyltransferases is most closely
related to the previously defined glycosyltransferase
family 1 (GT1). The members of this family may transfer
UDP, ADP, GDP, or CMP linked sugars. The diverse
enzymatic activities among members of this family
reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found
mainly in certain bacteria and archaea.
Length = 374
Score = 87.1 bits (216), Expect = 1e-18
Identities = 79/426 (18%), Positives = 143/426 (33%), Gaps = 75/426 (17%)
Query: 55 VAFFHPYCN-AGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIV 113
+ P + GG ER + AL + +++ + T P V
Sbjct: 2 ILLVTPEYPPSVGGAERHVLELARALAAR--GHEVTVLTPGDGGLP---------DEEEV 50
Query: 114 LPDQVINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTY 173
V+ L R + + L L L + D+ +A +
Sbjct: 51 GGIVVVRPPPLLRVRRLLLLLLLALRLR-----------RLLRRERFDVV-----HAHDW 94
Query: 174 PLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFAL 233
+ V+T + + L +
Sbjct: 95 LALLAAALAARL--------------LGIPLVLTVHGLEFGRPGNELGLLLKLARALERR 140
Query: 234 LYSHVGKYSDIIMVNSSWTEEHVIQLWNCQL-KTYKLYPPCDTE-------DLKKITHSK 285
+ +D I+ S T E + +L K + DTE ++
Sbjct: 141 AL----RRADRIIAVSEATREELRELGGVPPEKITVIPNGVDTERFRPAPRAARRRLGIP 196
Query: 286 TDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKD 345
D PV I+ V + P K L L A+ +LR+ +++L+ +G +E
Sbjct: 197 EDEPV-ILFVGRLVPRKGVDLLLEALAKLRKEYP-----DVRLVIVG-DGPLREE----- 244
Query: 346 MQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIA 405
++ L L L + V F +P ED+ ++ + + E FG+ ++E MAAGL ++A
Sbjct: 245 LEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVA 304
Query: 406 HKSGGPKMDIVIEDPETCRNGFLA--CDEVEYAQTIKLILHLSQDTKTRISQNAVSSV-D 462
GG ++V + G L D A+ I +L + + R+ + A V +
Sbjct: 305 SDVGGIP-EVVEDG----ETGLLVPPGDPEALAEAILRLLD-DPELRRRLGEAARERVAE 358
Query: 463 RFSMEE 468
RFS +
Sbjct: 359 RFSWDR 364
>gnl|CDD|215979 pfam00534, Glycos_transf_1, Glycosyl transferases group 1.
Mutations in this domain of human PIGA lead to disease
(Paroxysmal Nocturnal haemoglobinuria). Members of this
family transfer activated sugars to a variety of
substrates, including glycogen, Fructose-6-phosphate and
lipopolysaccharides. Members of this family transfer
UDP, ADP, GDP or CMP linked sugars. The eukaryotic
glycogen synthases may be distant members of this
family.
Length = 158
Score = 80.0 bits (198), Expect = 9e-18
Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 19/172 (11%)
Query: 288 GPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQ 347
I+ V + PEK L L A L++ NLKL+ +G EE + ++
Sbjct: 1 DKPIILFVGRLVPEKGLDLLLEAFALLKEQH-----PNLKLVIVGD-GEEEKK-----LK 49
Query: 348 DLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHK 407
L L LE+NV F +P ED+ + + + + E FG+ ++E MAAG+ +IA
Sbjct: 50 KLALKLGLEDNVIFVGFVPDEDLIELYRIADLFVLPSRYEGFGLVLLEAMAAGVPVIATD 109
Query: 408 SGGPKMDIVIEDPETCRNGFL--ACDEVEYAQTIKLILHLSQDTKTRISQNA 457
GGP +IV + G L D A+ I+ +L ++ + R+ +NA
Sbjct: 110 VGGPA-EIVKDG----ETGLLVDPGDAEALAEAIEKLLK-DEELRERLGENA 155
>gnl|CDD|99976 cd03804, GT1_wbaZ_like, This family is most closely related to the
GT1 family of glycosyltransferases. wbaZ in Salmonella
enterica has been shown to possess the mannosyl
transferase activity. The members of this family are
found in certain bacteria and Archaea.
Length = 351
Score = 68.3 bits (168), Expect = 2e-12
Identities = 88/431 (20%), Positives = 138/431 (32%), Gaps = 94/431 (21%)
Query: 55 VAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIY-IYTGDVDASPSEIIKRAHQRFNIV 113
VA H + GGGE+V V AL + +PD I+ + +K+ F
Sbjct: 2 VAIVHDWLVNIGGGEKV----VEALARLFPDADIFTLVDDPDKLPRLLRLKKIRTSFIQK 57
Query: 114 LPDQVINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTY 173
LP RR++ Y M L +E D+ I + +A
Sbjct: 58 LP--------FARRRYR---KYLPL---------MPLAIEQFDLSGYDLVISS-SHAVAK 96
Query: 174 PLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFY-YKVFA 232
+ + + CY H P R + + + L
Sbjct: 97 GVITRPDQLHI-CYCHTPM-----------RYAWDLYHDYLKESGLGKRLALRLLLHYLR 144
Query: 233 LLYSHVGKYSDIIMVNSSWTEEHV---IQLWNCQLKTYK-----LYPPCDTEDLKKITHS 284
+ D + NS V I+ K Y +YPP DT+ + T +
Sbjct: 145 IWDRRSAARVDYFIANS----RFVARRIK------KYYGRDATVIYPPVDTD---RFTPA 191
Query: 285 KTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVK 344
+ +SV + P K L + A +L +L+ IG E D + K
Sbjct: 192 EEKEDY-YLSVGRLVPYKRIDLAIEAFNKL----------GKRLVVIGDGP-ELDRLRAK 239
Query: 345 DMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMI 404
NV F + ++ ++ E FGI VE MA+G +I
Sbjct: 240 ----------AGPNVTFLGRVS-DEELRDLYARARAFLFPAEEDFGIVPVEAMASGTPVI 288
Query: 405 AHKSGGPKMDIVIEDPETCRNGFL-ACDEVE-YAQTIKLILHLSQDTKTRISQNAVSSVD 462
A+ GG + VI+ G L VE A ++ I +A +
Sbjct: 289 AYGKGGAL-ETVIDGV----TGILFEEQTVESLAAAVERFEKNEDFDPQAIRAHA----E 339
Query: 463 RFSMEEFKNGF 473
RFS F+
Sbjct: 340 RFSESRFREKI 350
>gnl|CDD|99971 cd03798, GT1_wlbH_like, This family is most closely related to the
GT1 family of glycosyltransferases. wlbH in Bordetella
parapertussis has been shown to be required for the
biosynthesis of a trisaccharide that, when attached to
the B. pertussis lipopolysaccharide (LPS) core (band B),
generates band A LPS.
Length = 377
Score = 67.8 bits (166), Expect = 3e-12
Identities = 77/432 (17%), Positives = 149/432 (34%), Gaps = 83/432 (19%)
Query: 51 VLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRF 110
+L + + P N GGG + AL + ++ + +++ R
Sbjct: 1 ILVISSLYPPPNN--GGGGIFVKELARALAK--RGVEVTVLAPG--PWGPKLLDLLKGRL 54
Query: 111 NIVLPDQVINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDI----YIDT 166
V V+ V + + + L +++ ++ L F+PD+ +
Sbjct: 55 VGVERLPVLLPVVPLLKGPL------LYLLAARALLKLL----KLKRFRPDLIHAHFAYP 104
Query: 167 MGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLF 226
G+A L G + +H + R+ R ++
Sbjct: 105 DGFAAA--LLKRKLGIPLVVTLHGSDVNLLPRKRLLRALLRR------------------ 144
Query: 227 YYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTY--------KLYPPCDTEDL 278
+ +D ++ S + + L K + + P D +
Sbjct: 145 -----------ALRRADAVIAVSEALADELKALGIDPEKVTVIPNGVDTERFSPADRAEA 193
Query: 279 KKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEE 338
+K + I+ V + P K + A+ +L + ++ L+ +G E
Sbjct: 194 RK--LGLPEDKKVILFVGRLVPRKGIDYLIEALARLLKKR-----PDVHLVIVGDGPLRE 246
Query: 339 DEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMA 398
+ L L LE+ V F +P+E++ ++ + + E FG+ ++E MA
Sbjct: 247 AL------EALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMA 300
Query: 399 AGLIMIAHKSGGPKMDIVIEDPETCRNGFL--ACDEVEYAQTIKLILHLSQDTKTRISQN 456
GL ++A GG +I D E NG L D A+ I +L D R+ +
Sbjct: 301 CGLPVVATDVGGIPE--IITDGE---NGLLVPPGDPEALAEAILRLL---ADPWLRLGRA 352
Query: 457 AVSSV-DRFSME 467
A V +RFS E
Sbjct: 353 ARRRVAERFSWE 364
>gnl|CDD|99982 cd03811, GT1_WabH_like, This family is most closely related to the
GT1 family of glycosyltransferases. WabH in Klebsiella
pneumoniae has been shown to transfer a GlcNAc residue
from UDP-GlcNAc onto the acceptor GalUA residue in the
cellular outer core.
Length = 353
Score = 65.8 bits (161), Expect = 9e-12
Identities = 80/434 (18%), Positives = 140/434 (32%), Gaps = 101/434 (23%)
Query: 55 VAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVL 114
+ F P GGG ERVL LA Y + + ++ R + +L
Sbjct: 2 ILFVIP-SLGGGGAERVL--LNLANGLDKRGYDVTL-----------VVLRDEGDYLELL 47
Query: 115 PDQVINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMG-YAFTY 173
P V + L L L +PD+ I +
Sbjct: 48 PSNVKLIPVRVLKLKSLRDLLAILRL-----------RRLLRKEKPDVVISHLTTTPNVL 96
Query: 174 PLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFAL 233
L + G+K+ + H + + +L + Y +
Sbjct: 97 ALLAARLGTKLIVWEH-----------------NSLSLELKRKLRLLLLIRKLYRRA--- 136
Query: 234 LYSHVGKYSDIIMVNSSWTEEHVIQLWNCQL-KTYKLYPPCDTEDLKK-----ITHSKTD 287
D I+ S +E +++L K +Y P D E+++ +
Sbjct: 137 ---------DKIVAVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIRALAEEPLELGIPP 187
Query: 288 GPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQ 347
I++V + P+K +RA LR+ + +L+ +G E +++
Sbjct: 188 DGPVILAVGRLSPQKGFDTLIRAFALLRK-----EGPDARLVILG--DGPLRE----ELE 236
Query: 348 DLCKHLSLENNVEF--KVNLPYEDMKK-------EFSEGLIGLHAMWNEHFGIGIVECMA 398
L K L L + V F + PY +K EG F ++E MA
Sbjct: 237 ALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSRYEG-----------FPNVLLEAMA 285
Query: 399 AGLIMIAHKSGGPKMDIVIEDPETCRNGFLA--CDEVEYAQTIKLILHLSQDTKTRISQN 456
G ++A GP+ +I+ + NG L DE A +L L D + R +
Sbjct: 286 LGTPVVATDCPGPR-EILEDG----ENGLLVPVGDEAALAAAALALLDLLLDPELR--ER 338
Query: 457 AVSSVDRFSMEEFK 470
++ E+
Sbjct: 339 LAAAARERVAREYS 352
>gnl|CDD|99973 cd03800, GT1_Sucrose_synthase, This family is most closely related
to the GT1 family of glycosyltransferases. The
sucrose-phosphate synthases in this family may be unique
to plants and photosynthetic bacteria. This enzyme
catalyzes the synthesis of sucrose 6-phosphate from
fructose 6-phosphate and uridine 5'-diphosphate-glucose,
a key regulatory step of sucrose metabolism. The
activity of this enzyme is regulated by phosphorylation
and moderated by the concentration of various
metabolites and light.
Length = 398
Score = 62.2 bits (152), Expect = 2e-10
Identities = 52/237 (21%), Positives = 94/237 (39%), Gaps = 31/237 (13%)
Query: 234 LYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKII 293
LYS G Y I V+ + + P E + D P I+
Sbjct: 178 LYSLYGAYPRRI---------RVVP---PGVDLERFTPYGRAEARRARLLRDPDKPR-IL 224
Query: 294 SVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHL 353
+V + P K +RA +L EL + L+ +G R++ + +++++L + L
Sbjct: 225 AVGRLDPRKGIDTLIRAYAELP-----ELRERANLVIVGGPRDDILAMDEEELRELAREL 279
Query: 354 SLENNVEFKVNLPYEDMKKEFSEGLIGLHAM--WNEHFGIGIVECMAAGLIMIAHKSGGP 411
+ + V+F + ED+ + + E FG+ +E MA GL ++A GGP
Sbjct: 280 GVIDRVDFPGRVSREDLPALYRAA--DVFVNPALYEPFGLTALEAMACGLPVVATAVGGP 337
Query: 412 KMDIVIEDPETCRNGFLA--CDEVEYAQTIKLILHLSQDTKTRISQNAVSSV-DRFS 465
+ DIV G L D A ++ +L + R+S+ + R++
Sbjct: 338 R-DIV----VDGVTGLLVDPRDPEALAAALRRLLT-DPALRRRLSRAGLRRARARYT 388
>gnl|CDD|99959 cd01635, Glycosyltransferase_GTB_type, Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. The structures of the formed
glycoconjugates are extremely diverse, reflecting a wide
range of biological functions. The members of this
family share a common GTB topology, one of the two
protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility.
Length = 229
Score = 59.9 bits (145), Expect = 3e-10
Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 17/136 (12%)
Query: 294 SVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHL 353
V + PEK + A L++ +LKL+ G E +++L L
Sbjct: 109 FVGRLAPEKGLDDLIEAFALLKERGP-----DLKLVIAGDGPEREY------LEELLAAL 157
Query: 354 SLENNVEFKVNLPYEDMKKEFSEGL-IGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPK 412
L + V F L E++ + + E FG+ ++E MA GL +IA GGP
Sbjct: 158 LLLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217
Query: 413 MDIVIEDPETCRNGFL 428
+IV + G L
Sbjct: 218 -EIVEDG----LTGLL 228
>gnl|CDD|99987 cd03817, GT1_UGDG_like, This family is most closely related to the
GT1 family of glycosyltransferases.
UDP-glucose-diacylglycerol glucosyltransferase (UGDG;
also known as 1,2-diacylglycerol 3-glucosyltransferase)
catalyzes the transfer of glucose from UDP-glucose to
1,2-diacylglycerol forming
3-D-glucosyl-1,2-diacylglycerol.
Length = 374
Score = 59.2 bits (144), Expect = 1e-09
Identities = 54/201 (26%), Positives = 97/201 (48%), Gaps = 21/201 (10%)
Query: 270 YPPCDTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLI 329
+ P D +D ++ D PV ++ V + EK+ +RA +L + ++KL+
Sbjct: 184 FEPVDGDDERRKLGIPEDEPV-LLYVGRLAKEKNIDFLIRAFARLL-----KEEPDVKLV 237
Query: 330 FIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHF 389
+G E +++++L + L L + V F +P E++ + + + A E
Sbjct: 238 IVGDG-PER-----EELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQ 291
Query: 390 GIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILHLSQD- 448
G+ ++E MAAGL ++A + G D+V D E NGFL E + +L L QD
Sbjct: 292 GLVLLEAMAAGLPVVAVDAPGLP-DLV-ADGE---NGFLFPPGDEAL--AEALLRLLQDP 344
Query: 449 -TKTRISQNAVSSVDRFSMEE 468
+ R+S+NA S ++FS +
Sbjct: 345 ELRRRLSKNAEESAEKFSFAK 365
>gnl|CDD|99990 cd03820, GT1_amsD_like, This family is most closely related to the
GT1 family of glycosyltransferases. AmSD in Erwinia
amylovora has been shown to be involved in the
biosynthesis of amylovoran, the acidic exopolysaccharide
acting as a virulence factor. This enzyme may be
responsible for the formation of galactose alpha-1,6
linkages in amylovoran.
Length = 348
Score = 56.1 bits (136), Expect = 1e-08
Identities = 70/412 (16%), Positives = 151/412 (36%), Gaps = 88/412 (21%)
Query: 63 NAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFV 122
GG ERVL AL +K +++ I + + + F + P + +
Sbjct: 10 GNAGGAERVLSNLANALAEK--GHEVTIIS----------LDKGEPPFYELDPKIKVIDL 57
Query: 123 YLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGS 182
R + A L + L + +PD+ I + T + +G
Sbjct: 58 GDKRDSKLLARFKKLRRLR-----------KLLKNNKPDVVISFLTSLLT--FLASLG-- 102
Query: 183 KVACYIHYPTITKEMLTRVARRVIT-HNNSQRVANNPILTSFKLFYYKVFALLYSHVGKY 241
++ + +++ HN+ LL + +
Sbjct: 103 ----------------LKIVKLIVSEHNSP-----------DAYKKRLRRLLLRRLLYRR 135
Query: 242 SDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKIISVAQFRPE 301
+D ++V + E+ + + P ++ + +I++V + P+
Sbjct: 136 ADAVVVLTE--EDRALYYKKFNKNVVVIPNPL-PFPPEEPSSDLKS--KRILAVGRLVPQ 190
Query: 302 KDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEF 361
K L + A ++ + + W KL +G E + ++ L K L LE+ V
Sbjct: 191 KGFDLLIEAWAKIAKKHPD--W---KLRIVGDG-PEREA-----LEALIKELGLEDRVIL 239
Query: 362 KVNLPYEDMKKEFSEGLIGLHAM---WNEHFGIGIVECMAAGLIMIAHK-SGGPKMDIVI 417
+++++ +++ + + + E F + ++E MA GL +I+ GP +I+
Sbjct: 240 LG--FTKNIEEYYAKA--SIFVLTSRF-EGFPMVLLEAMAFGLPVISFDCPTGPS-EIIE 293
Query: 418 EDPETCRNGFL--ACDEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSME 467
+ NG L D A+ + ++ ++ + R+ NA S +RFS+E
Sbjct: 294 DG----VNGLLVPNGDVEALAEALLRLME-DEELRKRMGANARESAERFSIE 340
>gnl|CDD|99981 cd03809, GT1_mtfB_like, This family is most closely related to the
GT1 family of glycosyltransferases. mtfB
(mannosyltransferase B) in E. coli has been shown to
direct the growth of the O9-specific polysaccharide
chain. It transfers two mannoses into the position 3 of
the previously synthesized polysaccharide.
Length = 365
Score = 50.1 bits (120), Expect = 1e-06
Identities = 56/323 (17%), Positives = 89/323 (27%), Gaps = 66/323 (20%)
Query: 101 EIIKRAHQRFNIVLPDQVINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQP 160
++K + ++LP + R P L G LL
Sbjct: 27 ALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRLLLLLLGL 86
Query: 161 DIYIDTMGYAFTYPLFSYIGGSKVACYIH--YPTITKEMLTRVARRVITHNNSQRVANNP 218
D+ A L G V IH P E
Sbjct: 87 DLLHSPHNTAPLLRLR----GVPVVVTIHDLIPLRFPE---------------------- 120
Query: 219 ILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQL-KTYKLYPPCD--- 274
F + + F L + +D I+ S T+ +++ K + D
Sbjct: 121 ---YFSPGFRRYFRRLLRRALRRADAIITVSEATKRDLLRYLGVPPDKIVVIPLGVDPRF 177
Query: 275 ----TEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIF 330
E P + V P K+ L A +L + KL+
Sbjct: 178 RPPPAEAEVLRALYLLPRPY-FLYVGTIEPRKNLERLLEAFARLP-----AKGPDPKLVI 231
Query: 331 IGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGL--HAM---- 384
+G +E+ + L L + V F + E+ L L A
Sbjct: 232 VGKRGWLNEEL-----LARLRELGLGDRVRFLGYVSDEE--------LAALYRGARAFVF 278
Query: 385 --WNEHFGIGIVECMAAGLIMIA 405
E FG+ ++E MA G +IA
Sbjct: 279 PSLYEGFGLPVLEAMACGTPVIA 301
>gnl|CDD|99980 cd03808, GT1_cap1E_like, This family is most closely related to the
GT1 family of glycosyltransferases. cap1E in
Streptococcus pneumoniae is required for the synthesis
of type 1 capsular polysaccharides.
Length = 359
Score = 49.5 bits (119), Expect = 2e-06
Identities = 49/254 (19%), Positives = 94/254 (37%), Gaps = 41/254 (16%)
Query: 229 KVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTE-------DLKKI 281
+++ LL +++D ++ + E L + T DL +
Sbjct: 126 RLYLLLERLALRFTDKVIFQN----EDDRDL----ALKLGIIKKKKTVLIPGSGVDLDRF 177
Query: 282 THSKT---DGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEE 338
+ S + + VA+ +K L A L+ N++L+ +G +E
Sbjct: 178 SPSPEPIPEDDPVFLFVARLLKDKGIDELLEAARILKAK-----GPNVRLLLVGDG--DE 230
Query: 339 DEVCVKDMQDLCKHLSLENNVEFKVNLPY-EDMKKEFSEGLIGLHAMWNEHFGIGIVECM 397
+ + L LE VEF L + +D+ + + + + + E ++E M
Sbjct: 231 EN---PAAILEIEKLGLEGRVEF---LGFRDDVPELLAAADVFVLPSYREGLPRVLLEAM 284
Query: 398 AAGLIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILHLSQDTKTRISQ 455
A G +IA G + + VI+ NGFL D A I+ ++ + + R+ Q
Sbjct: 285 AMGRPVIATDVPGCR-EAVIDG----VNGFLVPPGDAEALADAIERLIE-DPELRARMGQ 338
Query: 456 NAVSSV-DRFSMEE 468
A + F E
Sbjct: 339 AARKRAEEEFDEEI 352
>gnl|CDD|99998 cd04949, GT1_gtfA_like, This family is most closely related to the
GT1 family of glycosyltransferases and is named after
gtfA in Streptococcus gordonii, where it plays a role in
the O-linked glycosylation of GspB, a cell surface
glycoprotein involved in platelet binding. In general
glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The
acceptor molecule can be a lipid, a protein, a
heterocyclic compound, or another carbohydrate residue.
This group of glycosyltransferases is most closely
related to the previously defined glycosyltransferase
family 1 (GT1). The members of this family may transfer
UDP, ADP, GDP, or CMP linked sugars. The diverse
enzymatic activities among members of this family
reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found in
bacteria.
Length = 372
Score = 49.1 bits (118), Expect = 2e-06
Identities = 69/280 (24%), Positives = 128/280 (45%), Gaps = 45/280 (16%)
Query: 198 LTRVARRVIT-HNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEE-- 254
+ + A+ V+ H+N N+P+ + FY VF ++ K +I+ TE+
Sbjct: 118 MKKAAKVVVVLHSNHVSDNNDPVHSLINNFYEYVF----ENLDKVDGVIVA----TEQQK 169
Query: 255 HVIQLWNCQLKTYKLYPPCDT------EDLKKITHSKTDGPVKIISVAQFRPEKDHPLQL 308
+Q K + Y P T + LK K P KII+VA+ PEK +
Sbjct: 170 QDLQ------KQFGNYNPIYTIPVGSIDPLKLPAQFKQRKPHKIITVARLAPEKQLDQLI 223
Query: 309 RAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYE 368
+A ++ + + + L G +EE++ +++L + L LE+ V K
Sbjct: 224 KAFAKVVKQVPD-----ATLDIYGYG-DEEEK-----LKELIEELGLEDYVFLKGYTR-- 270
Query: 369 DMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSG-GPKMDIVIEDPETCRNGF 427
D+ + + + + L +E FG+ ++E ++ GL +I++ GP +I IED E NG+
Sbjct: 271 DLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYGP-SEI-IEDGE---NGY 325
Query: 428 LA--CDEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFS 465
L D A+ I +L+ + + + S+ A + +R+S
Sbjct: 326 LVPKGDIEALAEAIIELLNDPKLLQ-KFSEAAYENAERYS 364
>gnl|CDD|100003 cd05844, GT1_like_7, Glycosyltransferases catalyze the transfer of
sugar moieties from activated donor molecules to
specific acceptor molecules, forming glycosidic bonds.
The acceptor molecule can be a lipid, a protein, a
heterocyclic compound, or another carbohydrate residue.
This group of glycosyltransferases is most closely
related to the previously defined glycosyltransferase
family 1 (GT1). The members of this family may transfer
UDP, ADP, GDP, or CMP linked sugars. The diverse
enzymatic activities among members of this family
reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility.
Length = 367
Score = 46.1 bits (110), Expect = 3e-05
Identities = 37/177 (20%), Positives = 67/177 (37%), Gaps = 52/177 (29%)
Query: 289 PVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGS--TRNEEDEVCVKDM 346
P +I+ V +F +K L L A +L + ++L+ IG +
Sbjct: 188 PPRILFVGRFVEKKGPLLLLEAFARLAR-----RVPEVRLVIIGDGPLLAA--------L 234
Query: 347 QDLCKHLSLENNVEFKVNLPYEDMKKEF-----------------SEGLIGLHAMWNEHF 389
+ L + L L V F P+ ++++ +EGL
Sbjct: 235 EALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGL----------- 283
Query: 390 GIGIVECMAAGLIMIAHKSGG-PKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLIL 443
+ ++E A+G+ ++A + GG P+ +ED ET G L D A + +L
Sbjct: 284 PVVLLEAQASGVPVVATRHGGIPE---AVEDGET---GLLVPEGDVAALAAALGRLL 334
>gnl|CDD|100000 cd04951, GT1_WbdM_like, This family is most closely related to the
GT1 family of glycosyltransferases and is named after
WbdM in Escherichia coli. In general
glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The
acceptor molecule can be a lipid, a protein, a
heterocyclic compound, or another carbohydrate residue.
This group of glycosyltransferases is most closely
related to the previously defined glycosyltransferase
family 1 (GT1). The members of this family may transfer
UDP, ADP, GDP, or CMP linked sugars. The diverse
enzymatic activities among members of this family
reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found in
bacteria.
Length = 360
Score = 44.2 bits (105), Expect = 9e-05
Identities = 50/219 (22%), Positives = 89/219 (40%), Gaps = 35/219 (15%)
Query: 263 QLKTYKLYPPCDTEDLKKITHSK---------TDGPVKIISVAQFRPEKDHPLQLRAMYQ 313
K++ +Y DT+ +K + + I++V + KD+P L+A +
Sbjct: 153 ANKSFVVYNGIDTDRFRKDPARRLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAK 212
Query: 314 LRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNL-PYEDMKK 372
L ++KL+ G ++ L K L L N V+ L +D+
Sbjct: 213 LLSDYL-----DIKLLIAGD--GPLR----ATLERLIKALGLSNRVKL---LGLRDDIAA 258
Query: 373 EFSEG-LIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFL-AC 430
++ L L + W E FG+ + E MA L ++A +GG + V+ D +G +
Sbjct: 259 YYNAADLFVLSSAW-EGFGLVVAEAMACELPVVATDAGGVRE--VVGD-----SGLIVPI 310
Query: 431 DEVE-YAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEE 468
+ E A I IL +S + + I V +FS+
Sbjct: 311 SDPEALANKIDEILKMSGEERDIIGARRERIVKKFSINS 349
>gnl|CDD|99979 cd03807, GT1_WbnK_like, This family is most closely related to the
GT1 family of glycosyltransferases. WbnK in Shigella
dysenteriae has been shown to be involved in the type 7
O-antigen biosynthesis.
Length = 365
Score = 43.0 bits (102), Expect = 2e-04
Identities = 43/181 (23%), Positives = 71/181 (39%), Gaps = 27/181 (14%)
Query: 292 IISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCK 351
I VA+ P+KDH LRA L + N +L+ +G D +++ L
Sbjct: 196 IGIVARLHPQKDHATLLRAAALLLKKFP-----NARLLLVG------DGPDRANLELLAL 244
Query: 352 H-LSLENNVEFKVNL-PYEDMKKEFSEGL-IGLHAMWNEHFGIGIVECMAAGLIMIAHKS 408
L LE+ V L D+ L + + + +E F ++E MA GL ++A
Sbjct: 245 KELGLEDKVIL---LGERSDV-PALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDV 300
Query: 409 GGPKMDIVIEDPETCRNGFL--ACDEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSM 466
G ++V + GFL D A+ I+ +L + + FS+
Sbjct: 301 GDNA-ELVGD------TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEENFSI 353
Query: 467 E 467
E
Sbjct: 354 E 354
>gnl|CDD|99972 cd03799, GT1_amsK_like, This is a family of GT1
glycosyltransferases found specifically in certain
bacteria. amsK in Erwinia amylovora, has been reported
to be involved in the biosynthesis of amylovoran, a
exopolysaccharide acting as a virulence factor.
Length = 355
Score = 42.2 bits (100), Expect = 4e-04
Identities = 43/226 (19%), Positives = 87/226 (38%), Gaps = 28/226 (12%)
Query: 242 SDIIMVNSSWTEEHVIQLWNCQL-KTYKLYPPCDTEDLKKITHSKTDGPVKIISVAQFRP 300
+D ++ S + + +I+L C K + ++ D E P++I+SV +
Sbjct: 131 ADFVVAISEYNRQQLIRLLGCDPDKIHVVHCGVDLERFPPRPPPPPGEPLRILSVGRLVE 190
Query: 301 EKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVE 360
+K L A+ L+ + +L +G + +++ L L LE+ V
Sbjct: 191 KKGLDYLLEALALLKDR-----GIDFRLDIVGDGPLRD------ELEALIAELGLEDRVT 239
Query: 361 FKVNLPYEDMKKEFSEG----LIGLHAMWNEHFGIGIV--ECMAAGLIMIAHKSGG-PKM 413
E++++ L + A + G+ +V E MA GL +I+ G P
Sbjct: 240 LLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIP-- 297
Query: 414 DIVIEDPETCRNGFLA--CDEVEYAQTIKLILHLSQDTKTRISQNA 457
++V + G L D A I+ +L + + + +
Sbjct: 298 ELVEDG----ETGLLVPPGDPEALADAIERLLDDPELRR-EMGEAG 338
>gnl|CDD|234438 TIGR03999, thiol_BshA, N-acetyl-alpha-D-glucosaminyl L-malate
synthase BshA. Members of this protein family are BshA,
a glycosyltransferase required for bacillithiol
biosynthesis. This enzyme combines UDP-GlcNAc and
L-malate to form N-acetyl-alpha-D-glucosaminyl L-malate
synthase. Bacillithiol is a low-molecular-weight thiol,
an analog of glutathione and mycothiol, and is found
largely in the Firmicutes [Biosynthesis of cofactors,
prosthetic groups, and carriers, Glutathione and
analogs].
Length = 374
Score = 41.1 bits (97), Expect = 0.001
Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 46/212 (21%)
Query: 270 YPPCDTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLI 329
Y + LK+ + D V +I ++ FRP K + +++Q + KL+
Sbjct: 181 YRRKNDPALKRKLGAPEDEKV-LIHISNFRPVKRVEDVIEVFARVQQEVPA------KLL 233
Query: 330 FIGSTRNEEDEVCVKDMQDLCKHLSLENNVEF--KVN-----LPYEDMKKEFSEGLIGLH 382
+G + E + L + L L + V F K + L D+ SE
Sbjct: 234 LVG----DGPERS--PAEQLVRELGLTDRVLFLGKQDDVAELLSISDLFLLPSE------ 281
Query: 383 AMWNEHFGIGIVECMAAGLIMIAHKSGG-PKMDIVIEDPETCRNGFLA----CDEV-EYA 436
E FG+ +E MA G+ +IA +GG P+ V+E T GFL + + EYA
Sbjct: 282 ---KESFGLAALEAMACGVPVIASNAGGIPE---VVEHGVT---GFLCDVGDVETMAEYA 332
Query: 437 QTIKLILHLSQDTKTRISQNAVSSV-DRFSME 467
+ +L ++ R S A +RF E
Sbjct: 333 IS---LLE-DEELLQRFSAAARERAKERFDSE 360
>gnl|CDD|99968 cd03794, GT1_wbuB_like, This family is most closely related to the
GT1 family of glycosyltransferases. wbuB in E. coli is
involved in the biosynthesis of the O26 O-antigen. It
has been proposed to function as an
N-acetyl-L-fucosamine (L-FucNAc) transferase.
Length = 394
Score = 40.7 bits (96), Expect = 0.001
Identities = 34/169 (20%), Positives = 68/169 (40%), Gaps = 30/169 (17%)
Query: 308 LRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPY 367
L A L+ +++ + +G D +++++L K L L +NV F +P
Sbjct: 239 LEAAALLKDR------PDIRFLIVG------DGPEKEELKELAKALGL-DNVTFLGRVPK 285
Query: 368 EDMKKEFSEGLIGLHAMWNEHFGIGIV-----ECMAAGLIMIAHKSGGPKMDIVIEDPET 422
E++ + + +GL + G+ E MAAG ++A S + ++E+
Sbjct: 286 EELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLA--SVDGESAELVEEAGA 343
Query: 423 CRNGFL--ACDEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEF 469
G + D A I +L + + + +N R+ E+F
Sbjct: 344 ---GLVVPPGDPEALAAAILELL-DDPEERAEMGENGR----RYVEEKF 384
>gnl|CDD|131525 TIGR02472, sucr_P_syn_N, sucrose-phosphate synthase, putative,
glycosyltransferase domain. This family consists of the
N-terminal regions, or in some cases the entirety, of
bacterial proteins closely related to plant
sucrose-phosphate synthases (SPS). The C-terminal domain
(TIGR02471), found with most members of this family,
resembles both bona fide plant sucrose-phosphate
phosphatases (SPP) and the SPP-like domain of plant SPS.
At least two members of this family lack the SPP-like
domain, which may have binding or regulatory rather than
enzymatic activity by analogy to plant SPS. This enzyme
produces sucrose 6-phosphate and UDP from UDP-glucose
and D-fructose 6-phosphate, and may be encoded near the
gene for fructokinase.
Length = 439
Score = 38.2 bits (89), Expect = 0.009
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 387 EHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILH-- 444
E FG+ ++E A GL ++A GGP+ DI+ CRNG L +V + I L
Sbjct: 351 EPFGLTLLEAAACGLPIVATDDGGPR-DII----ANCRNGLLV--DVLDLEAIASALEDA 403
Query: 445 LSQDTKTRI-SQNAVSSVDR 463
LS ++ ++ S+N + V R
Sbjct: 404 LSDSSQWQLWSRNGIEGVRR 423
>gnl|CDD|99985 cd03814, GT1_like_2, This family is most closely related to the GT1
family of glycosyltransferases. Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. This group of glycosyltransferases
is most closely related to the previously defined
glycosyltransferase family 1 (GT1). The members of this
family may transfer UDP, ADP, GDP, or CMP linked sugars.
The diverse enzymatic activities among members of this
family reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found
mainly in bacteria and eukaryotes.
Length = 364
Score = 38.0 bits (89), Expect = 0.010
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 387 EHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLA--CDEVEYAQTIKLILH 444
E FG+ ++E MA+GL ++A +GGP ++ D E NG L D +A + +L
Sbjct: 277 ETFGLVVLEAMASGLPVVAPDAGGPAD--IVTDGE---NGLLVEPGDAEAFAAALAALLA 331
Query: 445 LSQDTKTRISQNAVSSVDRFSMEEFKNGFL 474
+ + R++ A + +R S E F + L
Sbjct: 332 DPELRR-RMAARARAEAERRSWEAFLDNLL 360
>gnl|CDD|100002 cd04962, GT1_like_5, This family is most closely related to the GT1
family of glycosyltransferases. Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. This group of glycosyltransferases
is most closely related to the previously defined
glycosyltransferase family 1 (GT1). The members of this
family may transfer UDP, ADP, GDP, or CMP linked sugars.
The diverse enzymatic activities among members of this
family reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found
mainly in bacteria, while some of them are also found in
Archaea and eukaryotes.
Length = 371
Score = 36.4 bits (85), Expect = 0.026
Identities = 50/208 (24%), Positives = 85/208 (40%), Gaps = 38/208 (18%)
Query: 270 YPPCDTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLI 329
+ P E LK+ + V +I ++ FRP K +R ++R+ + +L+
Sbjct: 179 FRPKPDEALKRRLGAPEGEKV-LIHISNFRPVKRIDDVIRIFAKVRKEV------PARLL 231
Query: 330 FIGSTRNEEDEVCVKDMQDLCKHLSLENNVEF--KVN-----LPYEDMKKEFSEGLIGLH 382
+G + L + L L+++V F K + L D+ SE
Sbjct: 232 LVGDGPERSP------AERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSE------ 279
Query: 383 AMWNEHFGIGIVECMAAGLIMIAHKSGG-PKMDIVIEDPETCRNGFLA-CDEVEYAQTIK 440
E FG+ +E MA G+ ++A +GG P+ V++ ET GFL +VE
Sbjct: 280 ---KESFGLAALEAMACGVPVVASNAGGIPE---VVKHGET---GFLVDVGDVEAMAEYA 330
Query: 441 LILHLSQDTKTRISQNAVSSV-DRFSME 467
L L + S+ A + +RF E
Sbjct: 331 LSLLEDDELWQEFSRAARNRAAERFDSE 358
>gnl|CDD|99975 cd03802, GT1_AviGT4_like, This family is most closely related to
the GT1 family of glycosyltransferases. aviGT4 in
Streptomyces viridochromogenes has been shown to be
involved in biosynthesis of oligosaccharide antibiotic
avilamycin A. Inactivation of aviGT4 resulted in a
mutant that accumulated a novel avilamycin derivative
lacking the terminal eurekanate residue.
Length = 335
Score = 34.9 bits (81), Expect = 0.087
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 17/84 (20%)
Query: 385 WNEHFGIGIVECMAAGLIMIAHKSGG-PKMDIVIEDPETCRNGFLACDEVEYAQTIKLIL 443
W E FG+ ++E MA G +IA + G P ++V + GFL E A +
Sbjct: 253 WEEPFGLVMIEAMACGTPVIAFRRGAVP--EVVEDG----VTGFLVDSVEELAAAVARAD 306
Query: 444 HLSQDTKTRISQNAV--SSVDRFS 465
R+ + A + RFS
Sbjct: 307 --------RLDRAACRRRAERRFS 322
>gnl|CDD|233879 TIGR02468, sucrsPsyn_pln, sucrose phosphate synthase/possible
sucrose phosphate phosphatase, plant. Members of this
family are sucrose-phosphate synthases of plants. This
enzyme is known to exist in multigene families in
several species of both monocots and dicots. The
N-terminal domain is the glucosyltransferase domain.
Members of this family also have a variable linker
region and a C-terminal domain that resembles sucrose
phosphate phosphatase (SPP) (EC 3.1.3.24) (see
TIGR01485), the next and final enzyme of sucrose
biosynthesis. The SPP-like domain likely serves a
binding and not a catalytic function, as the reported
SPP is always encoded by a distinct protein.
Length = 1050
Score = 34.0 bits (78), Expect = 0.19
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 387 EHFGIGIVECMAAGLIMIAHKSGGPKMDI 415
E FG+ ++E A GL M+A K+GGP +DI
Sbjct: 582 EPFGLTLIEAAAHGLPMVATKNGGP-VDI 609
>gnl|CDD|222322 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1.
Length = 134
Score = 31.9 bits (73), Expect = 0.28
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 355 LENNVEFKVNLPY-EDMKKEFSEGLIGLHAM-WNEHFGIGIVECMAAGLIMIAHKSGGPK 412
L NV F L + ED+ + + L + + + ++E +AAGL ++A G
Sbjct: 50 LAPNVHF---LGFVEDLAALLASADVALAPLRFGAGSPLKLLEALAAGLPVVATDIGAEG 106
Query: 413 MDIVIEDPETCRNGFLACDEVEYAQTIKLILH 444
+ + +A D E+A+ I +L
Sbjct: 107 LPEDLGWG-----VLVADDPEEFAEAIVRLLA 133
>gnl|CDD|215469 PLN02871, PLN02871, UDP-sulfoquinovose:DAG
sulfoquinovosyltransferase.
Length = 465
Score = 33.1 bits (76), Expect = 0.37
Identities = 47/238 (19%), Positives = 104/238 (43%), Gaps = 36/238 (15%)
Query: 241 YSDIIMVNSS----------WTEEHVIQLWNCQLKTYKLYPP-CDTEDLKKITHSKTDGP 289
+D+ +V S T + I++WN + + +P E +++ + + P
Sbjct: 205 AADLTLVTSPALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRSEEMRARLSGGEPEKP 264
Query: 290 VKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDL 349
+ I+ V + EK+ + L++++ E +L F+G E+ L
Sbjct: 265 L-IVYVGRLGAEKN-------LDFLKRVM--ERLPGARLAFVGDGPYREE---------L 305
Query: 350 CKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSG 409
K + V F L +++ + ++ G + + +E G ++E MA+G+ ++A ++G
Sbjct: 306 EKMFAGTPTV-FTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPVVAARAG 364
Query: 410 GPKMDIVIEDPETCRNGFLA--CDEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFS 465
G DI+ D E + GFL D + + ++ +L + + R+ A V+++
Sbjct: 365 GIP-DIIPPDQEG-KTGFLYTPGDVDDCVEKLETLLA-DPELRERMGAAAREEVEKWD 419
>gnl|CDD|238929 cd01967, Nitrogenase_MoFe_alpha_like, Nitrogenase_MoFe_alpha_like:
Nitrogenase MoFe protein, alpha subunit_like. The
nitrogenase enzyme catalyzes the ATP-dependent reduction
of dinitrogen to ammonia. Three genetically distinct
types of nitrogenase systems are known to exist: a
molybdenum-dependent nitrogenase (Mo-nitrogenase), a
vanadium dependent nitrogenase (V-nitrogenase), and an
iron-only nitrogenase (Fe-nitrogenase). These
nitrogenase systems consist of component 1 (MoFe
protein, VFe protein or, FeFe protein respectively) and,
component 2 (Fe protein). This group contains the alpha
subunit of component 1 of all three different forms. The
most widespread and best characterized of these systems
is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer,
the alternative nitrogenases are alpha2beta2delta2
hexamers having alpha and beta subunits similar to the
alpha and beta subunits of MoFe. The role of the delta
subunit is unknown. For MoFe, each alphabeta pair of
subunits contains one P-cluster (located at the
alphabeta interface) and, one molecule of iron
molybdenum cofactor (FeMoco) contained within the alpha
subunit. The Fe protein is a homodimer which contains, a
single [4Fe-4S] cluster from which electrons are
transferred to the P-cluster of the MoFe and in turn,
to FeMoCo the site of substrate reduction. The
V-nitrogenase requires an iron-vanadium cofactor
(FeVco), the iron only-nitrogenase an iron only cofactor
(FeFeco). These cofactors are analogous to the FeMoco.
The V-nitrogenase has P clusters identical to those of
MoFe. In addition to N2, nitrogenase also catalyzes the
reduction of a variety of other substrates such as
acetylene The V-nitrogenase differs from the Mo-
nitrogenase in that it produces free hydrazine, as a
minor product during dinitrogen reduction and, ethane
as a minor product during acetylene reduction.
Length = 406
Score = 33.0 bits (76), Expect = 0.37
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 13/58 (22%)
Query: 67 GGERVLWTAVLALHQKYPDYKIYIYTG--------DVDASPSEIIKRAHQRFNI-VLP 115
GGE+ L A+ ++++P I++Y+ D++A + K A + I V+P
Sbjct: 70 GGEKKLKKAIKEAYERFPPKAIFVYSTCPTGLIGDDIEA----VAKEASKELGIPVIP 123
>gnl|CDD|233881 TIGR02470, sucr_synth, sucrose synthase. This model represents
sucrose synthase, an enzyme that, despite its name,
generally uses rather produces sucrose. Sucrose plus UDP
(or ADP) becomes D-fructose plus UDP-glucose (or
ADP-glucose), which is then available for cell wall (or
starch) biosynthesis. The enzyme is homologous to
sucrose phosphate synthase, which catalyzes the
penultimate step in sucrose synthesis. Sucrose synthase
is found, so far, exclusively in plants and
cyanobacteria [Energy metabolism, Biosynthesis and
degradation of polysaccharides].
Length = 784
Score = 32.7 bits (75), Expect = 0.52
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 12/81 (14%)
Query: 387 EHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILHLS 446
E FG+ ++E M GL A + GGP +I+D +GF D + + I+
Sbjct: 654 EAFGLTVLEAMTCGLPTFATRFGGPLE--IIQDG---VSGFHI-DPYHGEEAAEKIVDFF 707
Query: 447 QDTKT------RISQNAVSSV 461
+ +ISQ + +
Sbjct: 708 EKCDEDPSYWQKISQGGLQRI 728
>gnl|CDD|132132 TIGR03088, stp2, sugar transferase, PEP-CTERM/EpsH1 system
associated. Members of this family include a match to
the pfam00534 Glycosyl transferases group 1 domain.
Nearly all are found in species that encode the
PEP-CTERM/exosortase system predicted to act in protein
sorting in a number of Gram-negative bacteria. In
particular, these transferases are found proximal to a
particular variant of exosortase, EpsH1, which appears
to travel with a conserved group of genes summarized by
Genome Property GenProp0652. The nature of the sugar
transferase reaction catalyzed by members of this clade
is unknown and may conceivably be variable with respect
to substrate by species, but we hypothesize a conserved
substrate.
Length = 374
Score = 31.6 bits (72), Expect = 0.90
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 287 DGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIG 332
D V + +V + + KD P +RA L + + E + L+L+ +G
Sbjct: 192 DESVVVGTVGRLQAVKDQPTLVRAFALLVRQLP-EGAERLRLVIVG 236
>gnl|CDD|99984 cd03813, GT1_like_3, This family is most closely related to the GT1
family of glycosyltransferases. Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. This group of glycosyltransferases
is most closely related to the previously defined
glycosyltransferase family 1 (GT1). The members of this
family may transfer UDP, ADP, GDP, or CMP linked sugars.
The diverse enzymatic activities among members of this
family reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found
mainly in bacteria, while some of them are also found in
Archaea and eukaryotes.
Length = 475
Score = 31.8 bits (73), Expect = 0.93
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 30/104 (28%)
Query: 308 LRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEF--KVNL 365
+RA +R+ I + + IG T +ED ++ ++L + L LE+NV+F N+
Sbjct: 312 IRAAAIVRKKI-----PDAEGWVIGPT--DEDPEYAEECRELVESLGLEDNVKFTGFQNV 364
Query: 366 PYEDMKKEF--------SEGLIGLHAMWNEHFGIGIVECMAAGL 401
++ + SEG + I+E MAAG+
Sbjct: 365 --KEYLPKLDVLVLTSISEG-----------QPLVILEAMAAGI 395
>gnl|CDD|132490 TIGR03449, mycothiol_MshA, D-inositol-3-phosphate
glycosyltransferase. Members of this protein family,
found exclusively in the Actinobacteria, are MshA, the
glycosyltransferase of mycothiol biosynthesis. Mycothiol
replaces glutathione in these species.
Length = 405
Score = 30.9 bits (70), Expect = 1.5
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 346 MQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIA 405
+ +L L + + V F P E++ + + +NE FG+ +E A G ++A
Sbjct: 272 LIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVA 331
Query: 406 HKSGGPKMDIVIEDPETCRNGFL--ACDEVEYAQTIKLILHLSQDTKTRISQNAVSSVDR 463
+ GG + + + D ET G L D ++A + +L T+ R+ AV
Sbjct: 332 ARVGG--LPVAVADGET---GLLVDGHDPADWADALARLL-DDPRTRIRMGAAAVEHAAG 385
Query: 464 FSME 467
FS
Sbjct: 386 FSWA 389
>gnl|CDD|215118 PLN02177, PLN02177, glycerol-3-phosphate acyltransferase.
Length = 497
Score = 31.0 bits (70), Expect = 1.6
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 15/95 (15%)
Query: 130 VEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIH 189
+ S +PY+ L+ GS++ + LLS P +Y FTY S K +I
Sbjct: 35 ISRSAFPYYLLVALEAGSLLRALILLLSV-PFVY-------FTYLFISESLAIKTFVFIA 86
Query: 190 YPTITKEMLTRVARRVI-------THNNSQRVANN 217
+ + + V+R V+ H + RV N+
Sbjct: 87 FAGLKIRDIELVSRSVLPKFYAEDVHPETWRVFNS 121
>gnl|CDD|99970 cd03796, GT1_PIG-A_like, This family is most closely related to the
GT1 family of glycosyltransferases. Phosphatidylinositol
glycan-class A (PIG-A), an X-linked gene in humans, is
necessary for the synthesis of
N-acetylglucosaminyl-phosphatidylinositol, a very early
intermediate in glycosyl phosphatidylinositol
(GPI)-anchor biosynthesis. The GPI-anchor is an
important cellular structure that facilitates the
attachment of many proteins to cell surfaces. Somatic
mutations in PIG-A have been associated with Paroxysmal
Nocturnal Hemoglobinuria (PNH), an acquired
hematological disorder.
Length = 398
Score = 31.0 bits (71), Expect = 1.6
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 355 LENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGG 410
L++ VE +P+E ++ +G I L+ E F I IVE + GL++++ + GG
Sbjct: 248 LQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGG 303
>gnl|CDD|216655 pfam01708, Gemini_mov, Geminivirus putative movement protein.
This family consists of putative movement proteins from
Maize streak and wheat dwarf virus.
Length = 92
Score = 28.9 bits (65), Expect = 1.7
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 6 WKSVVMWLVFLFYSILALLLLSIIVLPLSVLLFKYYVSKKRKS 48
W V +F ++ L LL VL +L+ K +K+ +S
Sbjct: 34 WSRVGEIAIFTLVAVGVLYLLYTWVLKDLILVLK---AKRGRS 73
>gnl|CDD|99989 cd03819, GT1_WavL_like, This family is most closely related to the
GT1 family of glycosyltransferases. WavL in Vibrio
cholerae has been shown to be involved in the
biosynthesis of the lipopolysaccharide core.
Length = 355
Score = 29.9 bits (68), Expect = 3.0
Identities = 46/248 (18%), Positives = 87/248 (35%), Gaps = 34/248 (13%)
Query: 213 RVANNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNC---QLKT--- 266
R P +T+ FY Y+ + D ++ S++ +H+ + + +++
Sbjct: 98 RRTRPPFVTTVHGFYS--VNFRYNAIMARGDRVIAVSNFIADHIRENYGVDPDRIRVIPR 155
Query: 267 ---YKLYPPC---DTEDLKKITHSKTDGPVKIIS-VAQFRPEKDHPLQLRAMYQLRQIIS 319
+ P L +I + K + + A+ +L+
Sbjct: 156 GVDLDRFDPGAVPPERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLK---- 211
Query: 320 EELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPY-EDMKKEFSEGL 378
+ ++ L+ +G ++ +L K L L++ V F + + DM ++
Sbjct: 212 -KDDPDVHLLIVGDA-QGRRFY-YAELLELIKRLGLQDRVTF---VGHCSDMPAAYALAD 265
Query: 379 IGLHA-MWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFL--ACDEVEY 435
I + A E FG VE A G +IA GG + V G L D
Sbjct: 266 IVVSASTEPEAFGRTAVEAQAMGRPVIASDHGGA-RETVRPGET----GLLVPPGDAEAL 320
Query: 436 AQTIKLIL 443
AQ + IL
Sbjct: 321 AQALDQIL 328
>gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase.
Length = 565
Score = 29.9 bits (67), Expect = 3.6
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 40 YYVSKKRKSYNVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPD 85
Y + KKR S L+T A P N G RV A H+ + +
Sbjct: 197 YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 242
>gnl|CDD|236051 PRK07565, PRK07565, dihydroorotate dehydrogenase 2; Reviewed.
Length = 334
Score = 29.4 bits (67), Expect = 4.5
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 13/47 (27%)
Query: 130 VEASLYPYFTLLGQSIGSMI-----LGVEALLSF----QPDIYIDTM 167
V L PYF+ ++ +M G + L+ F QPDI ++T+
Sbjct: 168 VAVKLSPYFS----NLANMAKRLDAAGADGLVLFNRFYQPDIDLETL 210
>gnl|CDD|215073 PLN00142, PLN00142, sucrose synthase.
Length = 815
Score = 29.6 bits (67), Expect = 4.7
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 387 EHFGIGIVECMAAGLIMIAHKSGGPKMDIV 416
E FG+ +VE M GL A GGP IV
Sbjct: 677 EAFGLTVVEAMTCGLPTFATCQGGPAEIIV 706
>gnl|CDD|223563 COG0489, Mrp, ATPases involved in chromosome partitioning [Cell
division and chromosome partitioning].
Length = 265
Score = 28.9 bits (65), Expect = 4.8
Identities = 9/58 (15%), Positives = 21/58 (36%)
Query: 274 DTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFI 331
+ + + +K++S+ P P L + Q++ + LW + I
Sbjct: 115 ELLAGEALEPVIQHDGIKVLSILPLGPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVII 172
>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl
glycosylphosphotransferase. Members of this family are
generally found near other genes involved in the
biosynthesis of a variety of exopolysaccharides. These
proteins consist of two fused domains, an N-terminal
hydrophobic domain of generally low conservation and a
highly conserved C-terminal sugar transferase domain
(pfam02397). Characterized and partially characterized
members of this subfamily include Salmonella WbaP
(originally RfbP) , E. coli WcaJ , Methylobacillus EpsB,
Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B
Streptococcus CpsE (originally CpsD), and Streptococcus
suis Cps2E. Each of these is believed to act in
transferring the sugar from, for instance, UDP-glucose
or UDP-galactose, to a lipid carrier such as
undecaprenyl phosphate as the first (priming) step in
the synthesis of an oligosaccharide "block". This
function is encoded in the C-terminal domain. The
liposaccharide is believed to be subsequently
transferred through a "flippase" function from the
cytoplasmic to the periplasmic face of the inner
membrane by the N-terminal domain. Certain closely
related transferase enzymes such as Sinorhizobium ExoY
and Lactococcus EpsD lack the N-terminal domain and are
not found by this model.
Length = 445
Score = 29.5 bits (67), Expect = 5.0
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 17/100 (17%)
Query: 9 VVMWLVFLF----YSILALLL---LSIIVLPLSVLLFKYYVSKKRKSYNVLKTVAFFHPY 61
+++ L FL +S L LLL L++++L L LL + + + RK L+ V
Sbjct: 75 LLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRLRKRGKNLRRVLIV--- 131
Query: 62 CNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSE 101
G GE A Y++ G VD PS+
Sbjct: 132 ----GTGEAAEELAKALSRNPALGYRV---VGFVDDRPSD 164
>gnl|CDD|240090 cd04739, DHOD_like, Dihydroorotate dehydrogenase (DHOD) like
proteins. DHOD catalyzes the oxidation of
(S)-dihydroorotate to orotate. This is the fourth step
and the only redox reaction in the de novo biosynthesis
of UMP, the precursor of all pyrimidine nucleotides.
DHOD requires FMN as co-factor. DHOD divides into class
1 and class 2 based on their amino acid sequences and
cellular location. Members of class 1 are cytosolic
enzymes and multimers while class 2 enzymes are membrane
associated and monomeric. The class 1 enzymes can be
further divided into subtypes 1A and 1B which are
homodimers and heterotetrameric proteins, respectively.
This subgroup has the conserved FMN binding site, but
lacks some catalytic residues and may therefore be
inactive.
Length = 325
Score = 29.1 bits (66), Expect = 5.0
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 13/47 (27%)
Query: 130 VEASLYPYFTLLGQSIGSMI-----LGVEALLSF----QPDIYIDTM 167
V L P+F+ ++ M G + L+ F QPDI ++T+
Sbjct: 166 VAVKLSPFFS----ALAHMAKQLDAAGADGLVLFNRFYQPDIDLETL 208
>gnl|CDD|222495 pfam14012, DUF4229, Protein of unknown function (DUF4229). This
family of integral membrane proteins is functionally
uncharacterized. This family of proteins is found in
bacteria. Proteins in this family are typically between
95 and 122 amino acids in length.
Length = 65
Score = 26.8 bits (60), Expect = 5.1
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 9 VVMWLVFLFYSILALLLLS-----IIVLPLSVLLFK 39
VV+ V L +L +L++ ++ LPLS LLF+
Sbjct: 13 VVLTAVILLLGVLLGVLVAALLALVVALPLSYLLFR 48
>gnl|CDD|220281 pfam09531, Ndc1_Nup, Nucleoporin protein Ndc1-Nup. Ndc1 is a
nucleoporin protein that is a component of the Nuclear
Pore Complex, and, in fungi, also of the Spindle Pole
Body. It consists of six transmembrane segments, three
lumenal loops, both concentrated at the N-terminus and
cytoplasmic domains largely at the C-terminus, all of
which are well conserved.
Length = 557
Score = 29.2 bits (66), Expect = 5.2
Identities = 10/51 (19%), Positives = 19/51 (37%)
Query: 6 WKSVVMWLVFLFYSILALLLLSIIVLPLSVLLFKYYVSKKRKSYNVLKTVA 56
W S L Y+ + LLL + +L + +L R + + +
Sbjct: 34 WSSGSWSLFPSGYTGIRSLLLFLALLLIGILRKNQLHVGYRPYSSRIAQIL 84
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 29.3 bits (66), Expect = 5.3
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 8 SVVMWLVFLFYSILALLLLSIIVLPLSVLLFKYYVSKKRK 47
+V+ + L Y L L+ +++LP+ +L + + R+
Sbjct: 141 TVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRR 180
>gnl|CDD|214864 smart00860, SMI1_KNR4, SMI1 / KNR4 family. Proteins in this family
are involved in the regulation of 1,3-beta-glucan
synthase activity and cell-wall formation.
Length = 127
Score = 28.0 bits (62), Expect = 6.4
Identities = 14/91 (15%), Positives = 24/91 (26%), Gaps = 1/91 (1%)
Query: 101 EIIKRAHQRFNIVLPDQVINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALL-SFQ 159
E I ++ I LP+ F+ LY + S L +
Sbjct: 5 EEIAELEKKLGIKLPEDYKEFLLLYNGGELGGSAELPLGGLSLLDLLELEAAIEDQEEID 64
Query: 160 PDIYIDTMGYAFTYPLFSYIGGSKVACYIHY 190
DI + + GG + +
Sbjct: 65 SDIEEEEYALPGWLIFIADGGGGGILIDLDD 95
>gnl|CDD|236598 PRK09631, PRK09631, DNA topoisomerase IV subunit A; Provisional.
Length = 635
Score = 28.9 bits (65), Expect = 6.4
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 84 PDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLYR---RKFVEASLYPYF 138
PD K +I +V +I Q F+I+ D+ NF Y+ R KF+ +Y +
Sbjct: 516 PD-KTFIDKKNVYVGVVDINNSKEQVFSIIYRDKKDNFYYVKRFKIDKFILDKVYRFL 572
>gnl|CDD|172161 PRK13595, ubiA, prenyltransferase; Provisional.
Length = 292
Score = 28.7 bits (64), Expect = 6.9
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 5 LWKSVVMWLV-FLFYSILALLLLSIIVLPLSVLLFKYYVS-----KKRKSYNVLKTVAFF 58
L ++V++ FL Y L L + ++L L LF Y K R + L A+
Sbjct: 97 LLRAVLLLNAPFLLYLALLLPPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSNAAYA 156
Query: 59 HPYC-NAGGGGERVLWTAVLAL 79
P A G V W +LAL
Sbjct: 157 LPLALPALALGAPVPWPPLLAL 178
>gnl|CDD|238930 cd01968, Nitrogenase_NifE_I, Nitrogenase_NifE_I: a subgroup of the
NifE subunit of the NifEN complex: NifE forms an
alpha2beta2 tetramer with NifN. NifE and NifN are
structurally homologous to nitrogenase MoFe protein
alpha and beta subunits respectively. NifEN
participates in the synthesis of the iron-molybdenum
cofactor (FeMoco) of the MoFe protein. NifB-co (an iron
and sulfur containing precursor of the FeMoco) from NifB
is transferred to the NifEN complex where it is further
processed to FeMoco. The NifEN bound precursor of FeMoco
has been identified as a molybdenum-free, iron- and
sulfur- containing analog of FeMoco. It has been
suggested that this NifEN bound precursor also acts as a
cofactor precursor in nitrogenase systems which require
a cofactor other than FeMoco: i.e. iron-vanadium
cofactor (FeVco) or iron only cofactor (FeFeco).
Length = 410
Score = 28.8 bits (65), Expect = 7.8
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 12/57 (21%)
Query: 67 GGERVLWTAVLALHQKYPDYKIYIY----TG----DVDASPSEIIKRAHQRFNIVLP 115
GGE+ L+ A+L + ++Y +++Y D+DA + K A ++F I +
Sbjct: 69 GGEKKLYKAILEIIERYHPKAVFVYSTCVVALIGDDIDA----VCKTASEKFGIPVI 121
>gnl|CDD|206204 pfam14034, Spore_YtrH, Sporulation protein YtrH. This family of
proteins is involved in sporulation. It may contribute
to the formation and stability of the thick
peptidoglycan layer between the two membranes of the
spore, known as the cortex. In Bacillus subtilis its
expression is regulated by sigma-E.
Length = 102
Score = 27.1 bits (61), Expect = 8.7
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 134 LYPYFTLLGQSIG-SMILGVEALLSFQP 160
+ +F G IG S+I G+ A L+ +P
Sbjct: 4 ILSFFIAFGVVIGGSLIGGLGAFLTGEP 31
>gnl|CDD|166000 PLN02359, PLN02359, ethanolaminephosphotransferase.
Length = 389
Score = 28.6 bits (64), Expect = 8.9
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 12/71 (16%)
Query: 113 VLPDQVINFVYLYRRKFVE----------ASLYPYFTLLGQSIGSMILGVEALLSFQPDI 162
V+P N +Y K V+ A LYP+ TLLG + L L+ P +
Sbjct: 230 VIPTVAFNVSNVY--KVVQARKGSMLLALAMLYPFVTLLGGVLIWDYLSPSDLMRNYPHL 287
Query: 163 YIDTMGYAFTY 173
+ G AF +
Sbjct: 288 VVLGTGLAFGF 298
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.139 0.425
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,256,398
Number of extensions: 2502218
Number of successful extensions: 4253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4212
Number of HSP's successfully gapped: 110
Length of query: 488
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 387
Effective length of database: 6,457,848
Effective search space: 2499187176
Effective search space used: 2499187176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.6 bits)