RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15555
(488 letters)
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural
genomics, PSI, protein struct initiative; 1.80A
{Archaeoglobus fulgidus} SCOP: c.87.1.8
Length = 177
Score = 77.6 bits (192), Expect = 5e-17
Identities = 42/196 (21%), Positives = 73/196 (37%), Gaps = 28/196 (14%)
Query: 270 YPPCDTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLI 329
P +T K K G +SV + PEK LQL +L+ + KL
Sbjct: 9 SHPVETSKFK----FKCYGDF-WLSVNRIYPEKRIELQLEVFKKLQ---------DEKLY 54
Query: 330 FIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHF 389
+G + + + +NV+F ++ E++ +S L +E F
Sbjct: 55 IVGWFSKGDH---AERYARKIMKI-APDNVKFLGSVSEEELIDLYSRCKGLLCTAKDEDF 110
Query: 390 GIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVE-YAQTIKLILHLSQD 448
G+ +E MA+G +IA GG K + VI + G+L +V +K +
Sbjct: 111 GLTPIEAMASGKPVIAVNEGGFK-ETVINEK----TGYLVNADVNEIIDAMKKVSKNPD- 164
Query: 449 TKTRISQNAVSSVDRF 464
+ ++ F
Sbjct: 165 ---KFKKDCFRRAKEF 177
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann
fold, glycosyltransferase, transferase; 1.50A
{Helicobacter pylori}
Length = 166
Score = 76.8 bits (190), Expect = 9e-17
Identities = 28/180 (15%), Positives = 69/180 (38%), Gaps = 19/180 (10%)
Query: 289 PVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQD 348
P KI V ++ EK+ + ++A+ + ++ L+ G +E+ ++
Sbjct: 2 PFKIAMVGRYSNEKNQSVLIKAVALSKYK------QDIVLLLKGKGPDEK------KIKL 49
Query: 349 LCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKS 408
L + L ++ F + ++ + + +HA E I +E ++ G++ + S
Sbjct: 50 LAQKLGVKAEFGF---VNSNELLEILKTCTLYVHAANVESEAIACLEAISVGIVPVIANS 106
Query: 409 GGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEE 468
D R+ F + + + I L ++ + R+ S +++E
Sbjct: 107 PLSATRQFALD---ERSLFEPNNAKDLSAKIDWWLE-NKLERERMQNEYAKSALNYTLEN 162
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide,
carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Length = 394
Score = 78.1 bits (193), Expect = 7e-16
Identities = 67/414 (16%), Positives = 134/414 (32%), Gaps = 80/414 (19%)
Query: 66 GGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYLY 125
GG V L ++ ++I+ T + +++ +Y +
Sbjct: 27 GGSGVVGTELGKQLAER--GHEIHFITSGLPFRLNKVYPN----------------IYFH 68
Query: 126 RRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVA 185
V + Y F + E DI + YA + + +Y+
Sbjct: 69 E---VTVNQYSVFQYPPYDLALASKMAEVAQRENLDI-LHVH-YAIPHAICAYLA----- 118
Query: 186 CYIHYPTITKEMLTRVARRVIT-HNNSQRVANNPILTSFKLFYYKVFALLYSHVGKYSDI 244
K+M+ + V T H V + + + SD+
Sbjct: 119 ---------KQMIGERIKIVTTLHGTDITVLGS------DPSLNNLIRFGI----EQSDV 159
Query: 245 IMVNSSWTEEHVIQLWNCQLKTY--------KLYPPCDTEDLKKITHSKTDGPVKIISVA 296
+ S +L ++Y D LKK + +I ++
Sbjct: 160 VTAVSHSLINETHELVKPNKDIQTVYNFIDERVYFKRDMTQLKKEYGISESEKI-LIHIS 218
Query: 297 QFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLE 356
FR K ++A ++ + + KL+ +G E + L K+L +E
Sbjct: 219 NFRKVKRVQDVVQAFAKIVTEV------DAKLLLVGDG-PEFCT-----ILQLVKNLHIE 266
Query: 357 NNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIV 416
+ V F +++ + + + L E FG+ ++E MA G+ I + GG +++
Sbjct: 267 DRVLFLGKQ--DNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIP-EVI 323
Query: 417 IEDPETCRNGFLA--CDEVEYAQTIKLILHLSQDTKTRISQNAVSSV-DRFSME 467
G+L D A +L ++ + + A SV ++F E
Sbjct: 324 QHG----DTGYLCEVGDTTGVADQAIQLLK-DEELHRNMGERARESVYEQFRSE 372
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus
horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Length = 416
Score = 74.8 bits (184), Expect = 1e-14
Identities = 41/256 (16%), Positives = 87/256 (33%), Gaps = 31/256 (12%)
Query: 227 YYKVFALLYSHVGKYSDIIMVNSSWTEEHV-----------IQLWNCQLKTYKLYPPCDT 275
+ + L V KY I + + + I + + +
Sbjct: 162 NREFWEFLRRFVEKYDRYIFHLPEYVQPELDRNKAVIMPPSI---DPLSEKNVELKQTEI 218
Query: 276 EDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTR 335
+ + + P+ I V++F P K + ++++ I ++L+ +G
Sbjct: 219 LRILERFDVDPEKPI-ITQVSRFDPWKGIFDVIEIYRKVKEKI-----PGVQLLLVGVMA 272
Query: 336 NEEDE---VCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIG 392
+++ E K ++ + + ++ + + ++ + L E FG+
Sbjct: 273 HDDPEGWIYFEKTLRKIGEDYDVKVLTNL-IGVHAREVNAFQRASDVILQMSIREGFGLT 331
Query: 393 IVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILHLSQDTKTR 452
+ E M G +I GG K I D ET GFL D E + + +L +
Sbjct: 332 VTEAMWKGKPVIGRAVGGIK--FQIVDGET---GFLVRDANEAVEVVLYLLK-HPEVSKE 385
Query: 453 ISQNAVSSV-DRFSME 467
+ A V F +
Sbjct: 386 MGAKAKERVRKNFIIT 401
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus
stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Length = 413
Score = 67.9 bits (165), Expect = 2e-12
Identities = 61/433 (14%), Positives = 110/433 (25%), Gaps = 72/433 (16%)
Query: 44 KKRKSYNVLKTVAFFHPYCNAGG--GGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSE 101
R S K + P N GG K +I + + +
Sbjct: 38 NARTSSIKGKRLNLLVPSINQEHMFGGISTALKLFEQFDNKKFKKRIILTDATPNPKDLQ 97
Query: 102 IIKRAHQRFNIVLPDQVINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPD 161
K D + V R + + D
Sbjct: 98 SFKSFKYVMPEEDKDFALQIVPFNDRYNRTIPVAKH-----------------------D 134
Query: 162 IYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILT 221
I+I T + Y + S + P + + +SQ V
Sbjct: 135 IFIATAWWT-AYAAQRIV--SWQSDTYGIPPNKILYIIQDFEPGFYQWSSQYV------- 184
Query: 222 SFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKI 281
+ Y + + I + NS +++ Y P +T LK
Sbjct: 185 --------LAESTYKY--RGPQIAVFNSELLKQYFNNKGYNFTDEYFFQPKINTT-LKNY 233
Query: 282 THSKTDGPVKIISVAQF-RPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDE 340
+ K I+ + L + A+ Q + K+I +G +
Sbjct: 234 INDKRQKEKIILVYGRPSVKRNAFTLIVEALKIFVQKYDR--SNEWKIISVGEKHKDI-- 289
Query: 341 VCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAG 400
L ++ L ED IG+ M + H +E G
Sbjct: 290 -----------ALGKGIHLNSLGKLTLEDYADLLKRSSIGISLMISPHPSYPPLEMAHFG 338
Query: 401 LIMIAHKSGGPKMDIVIEDPETCRNGFLAC--DEVEYAQTIKLILHLSQ--DTKTRISQN 456
L +I +K + N + A+T+ + D + S N
Sbjct: 339 LRVITNKYENK------DLSNWHSNIVSLEQLNPENIAETLVELCMSFNNRDVDKKESSN 392
Query: 457 AVSSVDRFSMEEF 469
+ ++ F+ F
Sbjct: 393 MMFYINEFNEFSF 405
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta
alpha beta, substrate AS catalysis; 2.10A
{Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Length = 438
Score = 64.2 bits (157), Expect = 3e-11
Identities = 46/244 (18%), Positives = 93/244 (38%), Gaps = 30/244 (12%)
Query: 238 VGKYSDIIMVNSSWTEEHVIQLWNCQ------------LKTYKLYPPCDTEDLKKITHSK 285
+ +D++ VN+ + ++ ++ ++ Y TE ++
Sbjct: 181 LVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGNDRATERSRRELGIP 240
Query: 286 TDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIG--STRNEEDEVCV 343
V + V + +P K + ++A+ L + NL++I G S N +
Sbjct: 241 LHTKV-VAFVGRLQPFKGPQVLIKAVAALFDRDPD---RNLRVIICGGPSGPNATPDTY- 295
Query: 344 KDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIM 403
+ + + L +E + F P ++ + I +NE FG+ +E A+G +
Sbjct: 296 ---RHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPV 352
Query: 404 IAHKSGGPKMDIVIEDPETCRNGFL--ACDEVEYAQTIKLILHLSQDTKTRISQNAVSSV 461
IA + GG V E G L +A + +L +T+ R+ ++AV
Sbjct: 353 IAARVGGLP-IAVAE----GETGLLVDGHSPHAWADALATLLD-DDETRIRMGEDAVEHA 406
Query: 462 DRFS 465
FS
Sbjct: 407 RTFS 410
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase,
lipopolysaccharide biosynthesis, family GT-4,
glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia
coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Length = 374
Score = 62.0 bits (151), Expect = 1e-10
Identities = 30/185 (16%), Positives = 64/185 (34%), Gaps = 25/185 (13%)
Query: 287 DGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDM 346
+ ++ V K + A+ L E L N L +G + +
Sbjct: 195 QQNL-LLQVGSDFGRKGVDRSIEALASLP----ESLRHNTLLFVVGQDKPRK-------F 242
Query: 347 QDLCKHLSLENNVEFKVNLPY-EDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIA 405
+ L + L + +NV F D+ + + + LH + E GI ++E + AGL ++
Sbjct: 243 EALAEKLGVRSNVHF---FSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLT 299
Query: 406 HKSGGPKMDIVIEDPETCRNGFLAC---DEVEYAQTIKLILHLSQDTKTRISQNAVSSVD 462
G + + G + + + + ++ L + ++NA D
Sbjct: 300 TAVCGYA-HYIADA----NCGTVIAEPFSQEQLNEVLRKALT-QSPLRMAWAENARHYAD 353
Query: 463 RFSME 467
+
Sbjct: 354 TQDLY 358
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar
donar complex rossmann fold, GT-B fold,
glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A
{Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Length = 816
Score = 61.1 bits (148), Expect = 5e-10
Identities = 37/214 (17%), Positives = 75/214 (35%), Gaps = 30/214 (14%)
Query: 269 LYPPCDTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKL 328
LY + ++ + P+ + ++A+ K+ + + L + L
Sbjct: 554 LYSDVENKEHLCV-LKDKKKPI-LFTMARLDRVKNLSGLVEWYGKNT-----RLRELANL 606
Query: 329 IFIG------STRNEEDEVCVKDMQDLCKHLSLENNVEF-KVNLPYEDM----KKEFSEG 377
+ +G S NEE +K M DL + L + + +
Sbjct: 607 VVVGGDRRKESKDNEEKAE-MKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTK 665
Query: 378 LIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLA--CDEVEY 435
+ E FG+ +VE M GL A GGP +I++ ++GF +
Sbjct: 666 GAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPA-EIIVH----GKSGFHIDPYHGDQA 720
Query: 436 AQTI-KLILHLSQDTKTR--ISQNAVSSV-DRFS 465
A T+ +D IS+ + + ++++
Sbjct: 721 ADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYT 754
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside
mannosyltransferase...; GT-B fold,
alpha-mannosyltransferase; HET: GDD; 2.00A
{Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Length = 394
Score = 55.0 bits (133), Expect = 2e-08
Identities = 43/243 (17%), Positives = 76/243 (31%), Gaps = 40/243 (16%)
Query: 221 TSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTED--- 277
+G D++ S +T + L D +
Sbjct: 120 HEVGWSMLPGSRQSLRKIGTEVDVLTYISQYTLRRFKSAFGSHPTFEHLPSGVDVKRFTP 179
Query: 278 --------LKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLI 329
+K PV I ++ P K ++AM Q+ + +L+
Sbjct: 180 ATPEDKSATRKKLGFTDTTPV-IACNSRLVPRKGQDSLIKAMPQVIAAR-----PDAQLL 233
Query: 330 FIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEG-------LIGLH 382
+GS R E ++ L + NV+F L Y+DM +
Sbjct: 234 IVGSGRYEST------LRRLAT--DVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGG 285
Query: 383 AMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFL--ACDEVEYAQTIK 440
+ E GI +E A G+ +IA SGG + V G + D + ++ +
Sbjct: 286 GLDVEGLGIVYLEAQACGVPVIAGTSGGAP-ETVTP-----ATGLVVEGSDVDKLSELLI 339
Query: 441 LIL 443
+L
Sbjct: 340 ELL 342
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A
{Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Length = 499
Score = 54.4 bits (131), Expect = 4e-08
Identities = 38/213 (17%), Positives = 81/213 (38%), Gaps = 31/213 (14%)
Query: 271 PPCDTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIF 330
+ + + + P II+ ++ +K+H + A Q + EL D L+
Sbjct: 245 AKITKYLERDLGSERMELPA-IIASSRLDQKKNHYGLVEAYVQNK-----ELQDKANLVL 298
Query: 331 IG-----------STRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLI 379
EE E+ + + +L + V +++ ++
Sbjct: 299 TLRGIENPFEDYSRAGQEEKEI-LGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLAS 357
Query: 380 --GLHAM--WNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLA--CDEV 433
+ A+ + E FG+ VE MA+GL + ++GGP +I+ + G L D
Sbjct: 358 KGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPA-EILDG----GKYGVLVDPEDPE 412
Query: 434 EYAQTIKLILHLSQDTKTRISQNAVSSV-DRFS 465
+ A+ + S++T + + V +R++
Sbjct: 413 DIARGLLKAFE-SEETWSAYQEKGKQRVEERYT 444
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU
proteins, viral protein,transferase; 2.31A {Paramecium
bursaria chlorella virus NY} PDB: 3oy7_A*
Length = 413
Score = 54.0 bits (129), Expect = 4e-08
Identities = 29/273 (10%), Positives = 73/273 (26%), Gaps = 24/273 (8%)
Query: 216 NNPILTSFKLFYYKVFALLYSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDT 275
+L + L + +M S + C++ + DT
Sbjct: 108 TKIVLYVDLVSKNIRENLWWIFSHPKVVGVMAMSKCWISDICNYG-CKVPINIVSHFVDT 166
Query: 276 EDL----KKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLI-- 329
+ + K + S+ + V +++ + K + + A + + L
Sbjct: 167 KTIYDARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHH 226
Query: 330 FIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHF 389
+ + L + + L E + ++ + ++ E F
Sbjct: 227 ESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSSGEGF 286
Query: 390 GIGIVECMAAGLIMIAHKSGG--------------PKMDIVIEDPETCRNGFLACDEVEY 435
G+ E G +I GG P I ++D + D +
Sbjct: 287 GLCSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDL 346
Query: 436 AQTIKLILHLSQDTKTRISQNAVSSV-DRFSME 467
+ + + + V + + +
Sbjct: 347 VEAFTFFKD--EKNRKEYGKRVQDFVKTKPTWD 377
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.4 bits (122), Expect = 5e-07
Identities = 45/365 (12%), Positives = 114/365 (31%), Gaps = 112/365 (30%)
Query: 203 RRVITHNNSQRVAN--NPILTSFKLFY---------YKVFALLYSHVGKYSDIIMVNSSW 251
+ +++ + + + + +LF+ + F V +++ +N +
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF------VE---EVLRINYKF 93
Query: 252 TEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKIIS---VAQFRPEKDHPLQL 308
L + +KT + P T + + ++ + V+ R + L+
Sbjct: 94 -------LMS-PIKTEQRQPSMMTRMYIE-QRDRLYNDNQVFAKYNVS--RLQPYLKLR- 141
Query: 309 RAMYQLR---------------QIISEELWDNLKL-------IF-IGSTRNEEDEVCVKD 345
+A+ +LR ++ ++ + K+ IF + E ++
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 346 MQDLCKHL--SLENNVEFKVNLPY--EDMK---------KEFSEGLIGLHAMWN----EH 388
+Q L + + + + N+ ++ K + L+ L + N
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 389 FGIG-----------IVECMAAGL---IMIAHKSGG-----------PKMDIVIED--PE 421
F + + + ++A I + H S +D +D E
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 422 TCRNGFLACDEV-----EYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLTF 476
+ + T H++ D T I + SS++ E++ F
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE---SSLNVLEPAEYRKMFDRL 378
Query: 477 TQPLF 481
+ +F
Sbjct: 379 S--VF 381
Score = 46.8 bits (110), Expect = 1e-05
Identities = 55/394 (13%), Positives = 110/394 (27%), Gaps = 124/394 (31%)
Query: 39 KYYVSKKRKSYNVLKTVAF---FHPY---CNAGGGGERVLWTAVLALH--QKYPDYKIY- 89
KY VS+ + Y L+ G G+ + V + Q D+KI+
Sbjct: 128 KYNVSRLQP-YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 90 IYTGDVDASPSEIIK---------------RAHQRFNIVLPDQVINFVYLYRRKFVEASL 134
+ + + SP +++ R+ NI L I+ + R+ +++
Sbjct: 187 LNLKNCN-SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR---IHSIQAELRRLLKSKP 242
Query: 135 YP----------------YFTLLGQSIGSMIL------GVEALLSFQP--DIYIDTMGYA 170
Y F ++ IL V LS I +D
Sbjct: 243 YENCLLVLLNVQNAKAWNAF-----NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 171 FTYP----LFS-YIGGS-----KVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPIL 220
T L Y+ + + P + + + T +N + V + +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 221 TSFKLF-----------YYKVFALLYSHV-------------GKYSDIIMV-----NSS- 250
T + + ++ SD+++V S
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 251 ---WTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKIIS----VAQFRPEKD 303
+E I + + L+ E+ + H I+ F +
Sbjct: 417 VEKQPKESTISIPSIYLELK-----VKLENEYAL-HRS------IVDHYNIPKTFDSDDL 464
Query: 304 HPLQLRA------MYQLRQIISEELWDNLKLIFI 331
P L + L+ I E +++F+
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4
glycosyltransferase, rossmann fold, complex; HET: GDP;
2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Length = 406
Score = 41.5 bits (98), Expect = 5e-04
Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 41/193 (21%)
Query: 287 DGPVKIISVAQF-RPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKD 345
+G ++ + ++ P K + L A+ +L + +++++ +G R +EDE+
Sbjct: 207 EGRT-VLFLGRYDEPRKGMAVLLAALPKLV-----ARFPDVEILIVG--RGDEDEL---- 254
Query: 346 MQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAM---------WNEHFGIGIVEC 396
+ L ++ F + E FGI +VE
Sbjct: 255 ---REQAGDLAGHLRFLGQVDDAT--------KASAMRSADVYCAPHLGGESFGIVLVEA 303
Query: 397 MAAGLIMIAHKSGGPKMDIVIEDPETCRNGFL--ACDEVEYAQTIKLILHLSQDTKTRIS 454
MAAG ++A + ++ + G L D A + IL +
Sbjct: 304 MAAGTAVVASDLDAFR-RVLADG----DAGRLVPVDDADGMAAALIGILE-DDQLRAGYV 357
Query: 455 QNAVSSVDRFSME 467
A V R+
Sbjct: 358 ARASERVHRYDWS 370
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 8e-04
Identities = 75/497 (15%), Positives = 146/497 (29%), Gaps = 191/497 (38%)
Query: 93 GDVDAS---PSEIIKRAHQ---RFNIVLPDQVINFVY---------LYRR--KFVEASLY 135
G ++ P+ A Q +FN +LP+ F L + +V + +
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE 73
Query: 136 PYFTLLGQSIGSMILGVEALL-SFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTIT 194
P +G + L F+ Y+ G+ IH
Sbjct: 74 P------SKVGQFDQVLNLCLTEFENC----------------YLEGND----IH----- 102
Query: 195 KEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVF-------------ALLYSHVGKY 241
+A +++ N++ V ++ + Y AL +
Sbjct: 103 -----ALAAKLLQENDTTLVKTKELIKN----YITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 242 SDIIMV------NSSWTEEHVIQLWNCQLKTYKLYPP-----CDT--EDLKKITHSKTDG 288
+ ++ + + EE ++ Y+ Y E L ++ + D
Sbjct: 154 AQLVAIFGGQGNTDDYFEE--LR------DLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 289 PV---KIISVAQF------RPEKDH--------PL----QLRAMYQLRQIISEELWDNLK 327
+ +++ ++ P+KD+ PL QL A Y + + L+
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL-AHYVVTAKLLGFTPGELR 264
Query: 328 LIFIGSTRNEEDEVCVKDMQD-LCKHLSLENNVE-FKVNLPYEDMKKEFSEGLIGLHAMW 385
G+T + + + ++ ++ E F + ++K + +
Sbjct: 265 SYLKGAT------GHSQGLVTAVA--IAETDSWESF-----FVSVRK-------AITVL- 303
Query: 386 NEHFGIGIVEC-MAAGLIMIAHKSGGPKMDIVIEDPETCRNGF----LACDEVEYAQTIK 440
F IG V C A + P + +ED G L+ + Q
Sbjct: 304 ---FFIG-VRCYEAYPNTSLP-----PSI---LEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 441 LI----LHLSQDTKTRIS-----QNAV---------------------SSVDR----FSM 466
+ HL + IS +N V S +D+ FS
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 467 E--EFKNGFLTFTQPLF 481
+F N FL P F
Sbjct: 412 RKLKFSNRFLPVASP-F 427
Score = 33.9 bits (77), Expect = 0.16
Identities = 29/132 (21%), Positives = 41/132 (31%), Gaps = 54/132 (40%)
Query: 383 AMWNE---HF----GIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDEVEY 435
+WN HF G I+ DIVI +P F E
Sbjct: 1644 DVWNRADNHFKDTYGFSIL-------------------DIVINNPVNLTIHFGG----EK 1680
Query: 436 AQTI-----KLILHLSQDTKTRISQ-----NAVSSVDRFSMEEFKNGFLT---FTQP--- 479
+ I +I D K + + N S+ F E+ G L+ FTQP
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK---GLLSATQFTQPALT 1737
Query: 480 -----LFKVMKK 486
F+ +K
Sbjct: 1738 LMEKAAFEDLKS 1749
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin
A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB:
2iv3_A*
Length = 342
Score = 35.5 bits (82), Expect = 0.029
Identities = 25/236 (10%), Positives = 55/236 (23%), Gaps = 55/236 (23%)
Query: 196 EMLTRVARR----VITHNNS-------QRVANNPILTSFKLFYYKVFALLYSHVGKYSDI 244
E + R R V+ H++S ++S V + ++ +
Sbjct: 74 EEIERWLRTADVDVV-HDHSGGVIGPAGLPPGTAFISSHHFTTRPVNPVGCTYSSRAQRA 132
Query: 245 IMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKIISVAQFRPEKDH 304
VI P D + ++ + + P K
Sbjct: 133 HCGGGDDA--PVI------------PIPVDPARYRSAADQVAKEDF-LLFMGRVSPHKGA 177
Query: 305 PLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLSLENNVEFKVN 364
+ +L+ G E ++ + + VE
Sbjct: 178 LEAAAFAHAC----------GRRLVLAGPAWEPEY------FDEITRRYG--STVEPIGE 219
Query: 365 LPYEDMKKEFSE----------GLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGG 410
+ E + +W E + E +G ++ +G
Sbjct: 220 VGGERRLDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNGC 275
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase,
glucose-6-phosphate, yeast, allosteric AC transferase;
HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A*
3nch_A 3naz_A 3o3c_A* 3rsz_A*
Length = 725
Score = 34.4 bits (78), Expect = 0.081
Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 14/122 (11%)
Query: 364 NLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPK--MDIVIEDPE 421
L Y++ +G+ + E +G EC G+ I G M+ +IE +
Sbjct: 509 GLDYDEF---VRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGSYMEDLIETNQ 565
Query: 422 TCRNG-------FLACDEV--EYAQTIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNG 472
G F A DE + ++ + ++ + + D +
Sbjct: 566 AKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALSDLLDWKRMGLE 625
Query: 473 FL 474
++
Sbjct: 626 YV 627
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 30.3 bits (69), Expect = 1.2
Identities = 6/57 (10%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 304 HPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCV-KDMQDLCKHLSLENNV 359
+ + + +WD +++ R + E+ ++++ K L++ +
Sbjct: 270 QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFGLQSML 326
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 30.6 bits (70), Expect = 1.2
Identities = 8/42 (19%), Positives = 21/42 (50%)
Query: 8 SVVMWLVFLFYSILALLLLSIIVLPLSVLLFKYYVSKKRKSY 49
++++ L +F+ + L L ++ + P +L + + RK
Sbjct: 148 TIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLT 189
>1lql_A OSMC, osmotical inducible protein C like family; NEW fold,
structural genomics, BSGC structure funded by NIH,
protein structure initiative; 2.85A {Mycoplasma
pneumoniae} SCOP: d.227.1.1
Length = 166
Score = 28.4 bits (63), Expect = 3.5
Identities = 8/78 (10%), Positives = 19/78 (24%), Gaps = 12/78 (15%)
Query: 387 EHFGIGIVECMAAGLIMIAHKSGGPKMDIVIE-------DPETCRNGFLACDEVEYAQTI 439
G+ C A ++A +++ +P G E+
Sbjct: 68 AALLSGLAACELATANLMAPAKMITINKLLMNVTGSRSTNPTDGYFGL---REINL--HW 122
Query: 440 KLILHLSQDTKTRISQNA 457
++ S+
Sbjct: 123 EIHSPNSETEIKEFIDFV 140
>3rhz_A GTF3, nucleotide sugar synthetase-like protein;
glycosyltransferase, transferase; HET: UDP; 1.90A
{Streptococcus parasanguinis} PDB: 3qkw_A*
Length = 339
Score = 28.9 bits (64), Expect = 4.0
Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 14/101 (13%)
Query: 351 KHLSLENNVEFKVNLPYEDMKKEFSEGLIGL---HAMWNEHFGIGI----VECMAAGLIM 403
+++ L NV P E + E S+G GL E+ + +AAG+ +
Sbjct: 208 QNVELPQNVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPV 267
Query: 404 IAHKSGGP-------KMDIVIEDPETCRNGFLACDEVEYAQ 437
I + + +++D E +E EY +
Sbjct: 268 IVQEGIANQELIENNGLGWIVKDVEEAIMKVKNVNEDEYIE 308
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 4.5
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 397 MAAGLIMIAHKSGGPKMDIV 416
M+A + M+ S GP V
Sbjct: 1084 MSAWVNMLLISSSGPIKTPV 1103
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 28.7 bits (65), Expect = 5.1
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 8 SVVMWLVFLFYSILALLLLSIIVLPLSVLLFKYYVSKKRK 47
S++ L +F++ L L+ I+V P+ + + RK
Sbjct: 152 SIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRK 191
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 5.5
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 12/38 (31%)
Query: 274 DTEDLKKITHSKTDGPVKIISVAQFRPEKDHP-LQLRA 310
+ + LKK+ S +K+ + + P L ++A
Sbjct: 18 EKQALKKLQAS-----LKL-----YADDS-APALAIKA 44
>2vtf_A Endo-beta-N-acetylglucosaminidase; hydrolase, family 85,
glycosidase, carbohydrat binding; HET: B3P PGE; 1.79A
{Arthrobacter protophormiae} PDB: 3fhq_A* 3fha_A*
Length = 626
Score = 28.6 bits (63), Expect = 5.5
Identities = 12/55 (21%), Positives = 21/55 (38%)
Query: 378 LIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNGFLACDE 432
L W G GI+ +A +I +H++G P + V P ++
Sbjct: 91 YTDLMVYWAGSAGEGIIVPPSADVIDASHRNGVPILGNVFFPPTVYGGQLEWLEQ 145
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 28.3 bits (64), Expect = 6.3
Identities = 6/40 (15%), Positives = 19/40 (47%)
Query: 8 SVVMWLVFLFYSILALLLLSIIVLPLSVLLFKYYVSKKRK 47
S++ + +FY L ++ +++ P+ + + + R
Sbjct: 152 SIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRS 191
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.425
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,551,098
Number of extensions: 457519
Number of successful extensions: 1317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1305
Number of HSP's successfully gapped: 34
Length of query: 488
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 391
Effective length of database: 3,993,456
Effective search space: 1561441296
Effective search space used: 1561441296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.4 bits)