RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15555
(488 letters)
>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA
{Escherichia coli [TaxId: 562]}
Length = 456
Score = 64.9 bits (157), Expect = 7e-12
Identities = 24/218 (11%), Positives = 59/218 (27%), Gaps = 25/218 (11%)
Query: 274 DTEDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGS 333
L ++ + I SV + K P + A L + + +
Sbjct: 240 LPPKLAQLKAELKNVQN-IFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPT 298
Query: 334 TRNEEDEV---------CVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAM 384
+R + + L + + + K F +GL
Sbjct: 299 SRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTP 358
Query: 385 WNEHFGIGIVECMAAGL-----IMIAHKSGGPKMDIVIEDPETCRNGFLA--CDEVEYAQ 437
+ + E +AA +++ + G + + D E A
Sbjct: 359 LRDGMNLVAKEYVAAQDPANPGVLVLSQFAGA--------ANELTSALIVNPYDRDEVAA 410
Query: 438 TIKLILHLSQDTKTRISQNAVSSVDRFSMEEFKNGFLT 475
+ L +S + + + + + ++ F++
Sbjct: 411 ALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFIS 448
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus
abyssi [TaxId: 29292]}
Length = 437
Score = 56.4 bits (134), Expect = 3e-09
Identities = 65/417 (15%), Positives = 122/417 (29%), Gaps = 32/417 (7%)
Query: 66 GGGERVLWTAVLALHQKYPDYKIYI-YTGDVDASPSEIIKRAHQRFNIVLPDQVINFVYL 124
GG L AL + ++ G I+ + + + + + +
Sbjct: 16 GGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRI 75
Query: 125 YR----RKFVEASLYPYFTLLGQSIGSMILGVEALLS------FQPDI-YIDTMGYAFTY 173
YR E P + L + + LL+ PD+ + F
Sbjct: 76 YRIGGGLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFAG 135
Query: 174 PLFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFAL 233
L IH +++ +A P + Y +
Sbjct: 136 ALIKKYFKIPAVFTIHRL-----NKSKLPAFYFHEAGLSELAPYPDIDPEHTGGYIADIV 190
Query: 234 LYSHVGKYSDIIMVNSSWTEE-HVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKI 292
G D ++ + + + Y ++ KK SK +
Sbjct: 191 TTVSRGYLIDEWGFFRNFEGKITYVFNGIDCSFWNESYLTGSRDERKKSLLSKFGMDEGV 250
Query: 293 ISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKH 352
+ R ++ + + + S++ + ++ I IG +
Sbjct: 251 TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGD------PELEGWARSLE 304
Query: 353 LSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPK 412
N L E +++ + + + E FG+ +E M G I IA GG +
Sbjct: 305 EKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLR 364
Query: 413 MDIVIEDPETCRNGFL--ACDEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFSME 467
DI+ + G L A D E A I L LS+ ++ +N FS E
Sbjct: 365 -DIITNE-----TGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFSWE 415
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium
tumefaciens [TaxId: 358]}
Length = 477
Score = 54.7 bits (130), Expect = 1e-08
Identities = 30/254 (11%), Positives = 65/254 (25%), Gaps = 29/254 (11%)
Query: 226 FYYKVFALLYSHVGKYSDI---IMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKIT 282
F + ++ S I I + + N K +
Sbjct: 226 FGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFR 285
Query: 283 HSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVC 342
P+ +++ +K L A+ ++ +L+ +G+ +
Sbjct: 286 IDDDGSPL-FCVISRLTWQKGIDLMAEAVDEIVS-------LGGRLVVLGAGDVALEGAL 337
Query: 343 VKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLI 402
+ V + + + E G+ + + G I
Sbjct: 338 LAAASRH------HGRVGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCI 391
Query: 403 MIAHKSGGPKMDIVIE-----DPETCRNGFL--ACDEVEYAQTIKLILHLSQDTKTR--I 453
+ ++GG D VI+ G Q I+ + D K +
Sbjct: 392 PVVARTGGLA-DTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQM 450
Query: 454 SQNAVSSVDRFSME 467
+ + S S E
Sbjct: 451 QKLGMKS--DVSWE 462
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus
abyssi [TaxId: 29292]}
Length = 196
Score = 34.4 bits (77), Expect = 0.017
Identities = 39/180 (21%), Positives = 65/180 (36%), Gaps = 14/180 (7%)
Query: 287 DGPVKIISVAQF-RPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKD 345
D V + + +F R +K + L+A+ L + ++ I IG E +
Sbjct: 30 DEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKE---FQEMRFIIIGKGDPELEGWARSL 86
Query: 346 MQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIA 405
+ N L E +++ + + + E FG+ +E M G I IA
Sbjct: 87 EEKHG------NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIA 140
Query: 406 HKSGGPKMDIVIEDPETCRNGFLACDEVEYAQTIKLILHLSQDTKTRISQNAVSSVDRFS 465
GG + I E + G D E A I L LS+ ++ +N FS
Sbjct: 141 SAVGGLRDIITNETGILVKAG----DPGELANAILKALELSRSDLSKFRENCKKRAMSFS 196
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis
protein RfaG {Escherichia coli [TaxId: 562]}
Length = 370
Score = 30.7 bits (67), Expect = 0.38
Identities = 45/415 (10%), Positives = 103/415 (24%), Gaps = 61/415 (14%)
Query: 55 VAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVL 114
VAF GG +R + + + + +YT + +
Sbjct: 2 VAFCLYKYFPFGGLQRDFMRIASTVAAR--GHHVRVYTQSWEGDCPK------------- 46
Query: 115 PDQVINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP 174
+ + + + V+ L P +
Sbjct: 47 ---AFELIQVPVKSHTNHGRNAEY----------YAWVQNHLKEHPADRVVGFNKMPGLD 93
Query: 175 LFSYIGGSKVACYIHYPTITKEMLTRVARRVITHNNSQRVANNPILTSFKLFYYKVFALL 234
++ CY K L R+ R + +R K L+
Sbjct: 94 VYFAADV----CYAEKVAQEKGFLYRLTSRYRHYAAFERA---------TFEQGKSTKLM 140
Query: 235 YSHVGKYSDIIMVNSSWTEEHVIQLWNCQLKTYKLYPPCDTEDLKKITHSKTDGPVKIIS 294
+ +D + E I ++ ++ + + + ++
Sbjct: 141 MLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQ 200
Query: 295 VAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGSTRNEEDEVCVKDMQDLCKHLS 354
V K + A+ L + + + E
Sbjct: 201 VGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFS-- 258
Query: 355 LENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFGIGIVECMAAGLIMIAHKSGGPKMD 414
D+ + + + LH + E GI ++E + AGL ++ G
Sbjct: 259 -----------GRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYA-H 306
Query: 415 IVIEDPETCRNGFLACDEVEYAQTIKLILHLSQDTKTR--ISQNAVSSVDRFSME 467
+ + G + + Q +++ + R ++NA D +
Sbjct: 307 YIADA----NCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLY 357
>d1hska1 d.145.1.2 (A:15-208) Uridine
diphospho-N-Acetylenolpyruvylglucosamine reductase
(MurB), N-terminal domain {Staphylococcus aureus [TaxId:
1280]}
Length = 194
Score = 27.1 bits (59), Expect = 4.4
Identities = 21/156 (13%), Positives = 47/156 (30%), Gaps = 22/156 (14%)
Query: 276 EDLKKITHSKTDGPVKIISVAQFRPEKDHPLQLRAMYQLRQIISEELWDNLKLIFIGS-- 333
E LK+ T++KT G P K+ +++ ++ + + + ++G+
Sbjct: 21 EPLKRYTYTKTGGNADFY----ITPTKNE--------EVQAVVKYAYQNEIPVTYLGNGS 68
Query: 334 ---TRNEEDEVCVKDMQDLCKHLSLENNVEFKVNLPYEDMKKEFSEGLIGLHAMWNEHFG 390
R V + L ++ + D+ + + + G
Sbjct: 69 NIIIREGGIRGIVISLLSLDHIEVSDDAIIAGSGAAIIDVSRVARDYALTGLEFACGIPG 128
Query: 391 IGIVECMAAGLIMIAHKSGGPKMDIVIEDPETCRNG 426
+ + M A GG D + G
Sbjct: 129 -----SIGGAVYMNAGAYGGEVKDCIDYALCVNEQG 159
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 26.9 bits (59), Expect = 5.4
Identities = 10/92 (10%), Positives = 20/92 (21%), Gaps = 11/92 (11%)
Query: 49 YNVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108
+ + + + G A +AL + I R +
Sbjct: 118 RHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVL---GALPEDRHIDRLAK 174
Query: 109 RFNIVLPDQVINFVYLYR-----RKFVEASLY 135
R P + ++ L Y
Sbjct: 175 RQR---PGERLDLAMLAAIRRVYGLLANTVRY 203
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.139 0.425
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,868,643
Number of extensions: 89198
Number of successful extensions: 297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 15
Length of query: 488
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 399
Effective length of database: 1,185,626
Effective search space: 473064774
Effective search space used: 473064774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.4 bits)