BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15556
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 131 bits (329), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/100 (67%), Positives = 81/100 (81%), Gaps = 8/100 (8%)
Query: 60 GDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLGG 111
G RLKEGA+INKSL TLG VIS+LAE+ + KK+ FIPYRDSVLTWLL+++LGG
Sbjct: 262 GTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGG 321
Query: 112 NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVN 151
NS+T M+AA+SPAD+NY ETLSTLRYA+RAK I N +VN
Sbjct: 322 NSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 131 bits (329), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/100 (67%), Positives = 81/100 (81%), Gaps = 8/100 (8%)
Query: 60 GDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLGG 111
G RLKEGA+INKSL TLG VIS+LAE+ + KK+ FIPYRDSVLTWLL+++LGG
Sbjct: 262 GTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGG 321
Query: 112 NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVN 151
NS+T M+AA+SPAD+NY ETLSTLRYA+RAK I N +VN
Sbjct: 322 NSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 131 bits (329), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/100 (67%), Positives = 81/100 (81%), Gaps = 8/100 (8%)
Query: 60 GDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLGG 111
G RLKEGA+INKSL TLG VIS+LAE+ + KK+ FIPYRDSVLTWLL+++LGG
Sbjct: 262 GTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGG 321
Query: 112 NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVN 151
NS+T M+AA+SPAD+NY ETLSTLRYA+RAK I N +VN
Sbjct: 322 NSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 131 bits (329), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/100 (67%), Positives = 81/100 (81%), Gaps = 8/100 (8%)
Query: 60 GDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLGG 111
G RLKEGA+INKSL TLG VIS+LAE+ + KK+ FIPYRDSVLTWLL+++LGG
Sbjct: 278 GTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGG 337
Query: 112 NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVN 151
NS+T M+AA+SPAD+NY ETLSTLRYA+RAK I N +VN
Sbjct: 338 NSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 377
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/104 (62%), Positives = 77/104 (74%), Gaps = 3/104 (2%)
Query: 60 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 119
G+RLKE IN SL LG+VIS+L + KST IPYRDS LT LL+DSLGGN+KT+M+A
Sbjct: 272 GERLKEATKINLSLSALGNVISALVD---GKSTHIPYRDSKLTRLLQDSLGGNAKTVMVA 328
Query: 120 AISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELH 163
+ PA N ETL+TLRYANRAKNI NKP VNEDP ++RE
Sbjct: 329 NVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLREFQ 372
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 72/85 (84%), Gaps = 2/85 (2%)
Query: 60 GDRLKEGAHINKSLVTLGSVISSLAELST--KKSTFIPYRDSVLTWLLKDSLGGNSKTIM 117
GDRLKEG++INKSL TLG VIS+LA+ S K+ F+PYRDSVLTWLLKDSLGGNSKT M
Sbjct: 264 GDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAM 323
Query: 118 IAAISPADVNYSETLSTLRYANRAK 142
+A +SPA NY ETLSTLRYA+RAK
Sbjct: 324 VATVSPAADNYDETLSTLRYADRAK 348
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 77/102 (75%), Gaps = 3/102 (2%)
Query: 61 DRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAA 120
+R KE + IN SL LG+VI++LA +ST IPYRDS LT LL+DSLGGN+KTIM+A
Sbjct: 297 ERPKEASKINLSLSALGNVIAALA---GNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVAT 353
Query: 121 ISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIREL 162
+ PA +Y E+LSTLR+ANRAKNI NKP VNEDP ++RE
Sbjct: 354 LGPASHSYDESLSTLRFANRAKNIKNKPRVNEDPKDTLLREF 395
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/96 (66%), Positives = 71/96 (73%), Gaps = 4/96 (4%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
TG+ L EGA IN SL LG VIS L E +T IPYRDS LT LL+DSLGGNSKT+M
Sbjct: 254 TGETLVEGAKINLSLSALGLVISKLVE----GATHIPYRDSKLTRLLQDSLGGNSKTLMC 309
Query: 119 AAISPADVNYSETLSTLRYANRAKNIINKPTVNEDP 154
A ISPA NY ET+STLRYA+RAK I NKP +NEDP
Sbjct: 310 ANISPASTNYDETMSTLRYADRAKQIKNKPRINEDP 345
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 75/112 (66%), Gaps = 20/112 (17%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKS------------------TFIPYRDSV 100
TG RL+EG++INKSL TLG VI++LA+ + S + +PYRDSV
Sbjct: 312 TGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSV 371
Query: 101 LTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNE 152
LTWLLKDSLGGNSKT MIA ISP D Y ETLSTLRYA++AK I + VN+
Sbjct: 372 LTWLLKDSLGGNSKTAMIACISPTD--YDETLSTLRYADQAKRIRTRAVVNQ 421
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 69/85 (81%), Gaps = 1/85 (1%)
Query: 60 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 119
G R EG +IN+SL+ LG+VI++LA+ S +K+ IPYR+S LT LLKDSLGGN +TIMIA
Sbjct: 272 GTRFVEGTNINRSLLALGNVINALAD-SKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIA 330
Query: 120 AISPADVNYSETLSTLRYANRAKNI 144
A+SP+ V Y +T +TL+YANRAK+I
Sbjct: 331 AVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 62 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 121
R +E +IN+SL+TLG VI++L E ++ +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 281 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
Query: 122 SPADVNYSETLSTLRYANRAKNIINKPTVNE 152
SPA +N ETLSTL YA+RAKNI+NKP VN+
Sbjct: 337 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 62 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 121
R +E +IN+SL+TLG VI++L E ++ +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 281 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
Query: 122 SPADVNYSETLSTLRYANRAKNIINKPTVNE 152
SPA +N ETLSTL YA+RAKNI+NKP VN+
Sbjct: 337 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 62 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 121
R +E +IN+SL+TLG VI++L E ++ +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 280 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 335
Query: 122 SPADVNYSETLSTLRYANRAKNIINKPTVNE 152
SPA +N ETLSTL YA+RAKNI+NKP VN+
Sbjct: 336 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 366
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 62 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 121
R +E +IN+SL+TLG VI++L E ++ +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 281 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
Query: 122 SPADVNYSETLSTLRYANRAKNIINKPTVNE 152
SPA +N ETLSTL YA+RAKNI+NKP VN+
Sbjct: 337 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 62 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 121
R +E +IN+SL+TLG VI++L E ++ +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 272 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 327
Query: 122 SPADVNYSETLSTLRYANRAKNIINKPTVNE 152
SPA +N ETLSTL YA+RAKNI+NKP VN+
Sbjct: 328 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 62 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 121
R +E +IN+SL+TLG VI++L E ++ +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 281 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
Query: 122 SPADVNYSETLSTLRYANRAKNIINKPTVNE 152
SPA +N ETLSTL YA+RAKNI+NKP VN+
Sbjct: 337 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 62 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 121
R +E +IN+SL+TLG VI++L E ++ +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 281 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
Query: 122 SPADVNYSETLSTLRYANRAKNIINKPTVNE 152
SPA +N ETLSTL YA+RAKNI+NKP VN+
Sbjct: 337 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 62 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 121
R +E +IN+SL+TLG VI++L E ++ +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 283 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 338
Query: 122 SPADVNYSETLSTLRYANRAKNIINKPTVNE 152
SPA +N ETLSTL YA+RAKNI+NKP VN+
Sbjct: 339 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 369
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 100 bits (249), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 74/108 (68%), Gaps = 3/108 (2%)
Query: 37 GQYLKGLFHLI--PQYNQGIFYSITGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFI 94
GQ L FH + + + TG+RLKE IN SL+ LG+VIS+L + ++ + I
Sbjct: 238 GQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGD-PQRRGSHI 296
Query: 95 PYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAK 142
PYRDS +T +LKDSLGGN+KT+MIA +SP+ ++ ETL+TL YA+RA+
Sbjct: 297 PYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 67/87 (77%), Gaps = 4/87 (4%)
Query: 62 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 121
R +E +IN+SL+TLG VI++L E ++ +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 266 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 321
Query: 122 SPADVNYSETLSTLRYANRAKNIINKP 148
SPA +N ETLSTL YA+RAKNI+NKP
Sbjct: 322 SPASLNLEETLSTLEYAHRAKNILNKP 348
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 97.4 bits (241), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 69/93 (74%), Gaps = 4/93 (4%)
Query: 60 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 119
G R++E +IN+SL+TLG VI++L + ++ +PYR+S LT LL++SLGG +KT +IA
Sbjct: 281 GIRVRETVNINQSLLTLGRVITALVD----RAPHVPYRESKLTRLLQESLGGRTKTSIIA 336
Query: 120 AISPADVNYSETLSTLRYANRAKNIINKPTVNE 152
ISP + ETLSTL YA+RAKNI NKP VN+
Sbjct: 337 TISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQ 369
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Query: 37 GQYLKGLFHLI--PQYNQGIFYSITGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFI 94
GQ L FH + + + TG+ KE IN SL+ LG+VIS+L + ++ + I
Sbjct: 238 GQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGD-PQRRGSNI 296
Query: 95 PYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAK 142
PYRDS +T +LKDSLGGN+KT+MIA +SP+ ++ ETL+TL YA+RA+
Sbjct: 297 PYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 66/95 (69%), Gaps = 3/95 (3%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
+G L+E INKSL LG VI++L + KS+ +PYRDS LT +L++SLGGNS+T +I
Sbjct: 248 SGQTLEEAKKINKSLSALGMVINALTD---GKSSHVPYRDSKLTRILQESLGGNSRTTLI 304
Query: 119 AAISPADVNYSETLSTLRYANRAKNIINKPTVNED 153
SP+ N +ETLSTLR+ RAK+I NK VN +
Sbjct: 305 INCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAE 339
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 90.5 bits (223), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 61/92 (66%), Gaps = 4/92 (4%)
Query: 60 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 119
G L E +INKSL LG+VIS+LAE ST++PYRDS +T +L+DSLGGN +T ++
Sbjct: 245 GAVLDEAKNINKSLSALGNVISALAE----GSTYVPYRDSKMTRILQDSLGGNCRTTIVI 300
Query: 120 AISPADVNYSETLSTLRYANRAKNIINKPTVN 151
SP+ N SET STL + RAK I N VN
Sbjct: 301 CCSPSSYNESETKSTLLFGQRAKTIKNTVCVN 332
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 90.5 bits (223), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 63/92 (68%), Gaps = 4/92 (4%)
Query: 60 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 119
G++LKE INKSL LG VIS+L + + IPYR+ LT L+ DSLGGN+KT+M
Sbjct: 247 GNQLKEAQSINKSLSALGDVISAL----SSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFV 302
Query: 120 AISPADVNYSETLSTLRYANRAKNIINKPTVN 151
ISPA+ N ET ++L YA+R ++I+N P+ N
Sbjct: 303 NISPAESNLDETHNSLTYASRVRSIVNDPSKN 334
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 61/92 (66%), Gaps = 4/92 (4%)
Query: 60 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 119
G L E +INKSL LG+VIS+LAE ST++PYRDS +T +L+DSLGGN +T ++
Sbjct: 245 GAVLDEAKNINKSLSALGNVISALAE----GSTYVPYRDSKMTRILQDSLGGNCRTTIVI 300
Query: 120 AISPADVNYSETLSTLRYANRAKNIINKPTVN 151
SP+ N SET STL + RAK I N VN
Sbjct: 301 CCSPSSYNESETKSTLLFGQRAKTIKNTVCVN 332
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 62/94 (65%), Gaps = 3/94 (3%)
Query: 60 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 119
G L E +INKSL LG+VIS+LA+ T IPYRDS LT +L++SLGGN++T ++
Sbjct: 252 GTVLDEAKNINKSLSALGNVISALAD---GNKTHIPYRDSKLTRILQESLGGNARTTIVI 308
Query: 120 AISPADVNYSETLSTLRYANRAKNIINKPTVNED 153
SPA N SET STL + RAK + N VNE+
Sbjct: 309 CCSPASFNESETKSTLDFGRRAKTVKNVVCVNEE 342
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 58/85 (68%), Gaps = 4/85 (4%)
Query: 60 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 119
G L E +INKSL LG+VIS+LAE ST++PYRDS +T +L+DSLGGN +T ++
Sbjct: 245 GAVLDEAKNINKSLSALGNVISALAE----GSTYVPYRDSKMTRILQDSLGGNCRTTIVI 300
Query: 120 AISPADVNYSETLSTLRYANRAKNI 144
SP+ N SET STL + RAK I
Sbjct: 301 CCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
Query: 60 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 119
G++LKE INKSL LG VI +L + + IPYR+ LT L+ DSLGGN+KT+M
Sbjct: 255 GNQLKEAQSINKSLSALGDVIGAL----SSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFV 310
Query: 120 AISPADVNYSETLSTLRYANRAKNIINKPT 149
+SPA+ N ET ++L YA+R + I+N P+
Sbjct: 311 NVSPAESNLDETYNSLLYASRVRTIVNDPS 340
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 61/89 (68%), Gaps = 4/89 (4%)
Query: 60 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 119
GDRLKE INKSL LG VI SL + K + +PYR+S LT+LLK SLGGNSKT+M
Sbjct: 630 GDRLKETQAINKSLSCLGDVIHSL---NLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFV 686
Query: 120 AISPADVNYSETLSTLRYANRAKNI-INK 147
ISP + +ET+++LR+A + N INK
Sbjct: 687 NISPLTKDLNETINSLRFATKVNNTRINK 715
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 60/85 (70%), Gaps = 4/85 (4%)
Query: 60 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 119
G RL+E HINKSL LG VI++L + +P+R+S LT+LL+DSL G+SKT+M+
Sbjct: 248 GSRLREAQHINKSLSALGDVIAAL----RSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVV 303
Query: 120 AISPADVNYSETLSTLRYANRAKNI 144
+SP + N SETL +L++A R +++
Sbjct: 304 QVSPVEKNTSETLYSLKFAERVRSV 328
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 65/93 (69%), Gaps = 4/93 (4%)
Query: 60 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 119
G RLKEG +IN+SL LG VI L++ + FI YRDS LT +L++SLGGN+KT +I
Sbjct: 248 GVRLKEGCNINRSLFILGQVIKKLSD--GQVGGFINYRDSKLTRILQNSLGGNAKTRIIC 305
Query: 120 AISPADVNYSETLSTLRYANRAKNIINKPTVNE 152
I+P V++ ETL+ L++A+ AK + N P VNE
Sbjct: 306 TITP--VSFDETLTALQFASTAKYMKNTPYVNE 336
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 4/93 (4%)
Query: 60 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 119
G RLKE IN SL LG V+ +L + + +PYRDS LT LL+DSLGG++ +I+IA
Sbjct: 267 GLRLKESGAINTSLFVLGKVVDALNQGLPR----VPYRDSKLTRLLQDSLGGSAHSILIA 322
Query: 120 AISPADVNYSETLSTLRYANRAKNIINKPTVNE 152
I+P Y +T+S L +A R+K +IN+P NE
Sbjct: 323 NIAPERRFYLDTVSALNFAARSKEVINRPFTNE 355
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 57/82 (69%), Gaps = 3/82 (3%)
Query: 70 NKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYS 129
NKSL LG+VIS+LAE TK T +PYRDS +T +L+DSLGGN +T ++ SP+ N +
Sbjct: 1 NKSLSALGNVISALAE-GTK--THVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEA 57
Query: 130 ETLSTLRYANRAKNIINKPTVN 151
ET STL + RAK I N +VN
Sbjct: 58 ETKSTLMFGQRAKTIKNTVSVN 79
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 58/84 (69%), Gaps = 3/84 (3%)
Query: 68 HINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVN 127
+INKSL LG+VIS+LAE TK T +PYRDS +T +L+DSL GN +T ++ SP+ N
Sbjct: 3 NINKSLSALGNVISALAE-GTK--THVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFN 59
Query: 128 YSETLSTLRYANRAKNIINKPTVN 151
+ET STL + RAK I N +VN
Sbjct: 60 EAETKSTLMFGQRAKTIKNTVSVN 83
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 58 ITGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIM 117
+ GDRL+E +INKSL LG VI +L + + K IP+R+S LT+LL+ SL G+SKT+M
Sbjct: 267 VVGDRLRETQNINKSLSCLGDVIHALGQPDSTKR-HIPFRNSKLTYLLQYSLTGDSKTLM 325
Query: 118 IAAISPADVNYSETLSTLRYANRA 141
ISP+ + +ETL++LR+A++
Sbjct: 326 FVNISPSSSHINETLNSLRFASKV 349
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 58 ITGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIM 117
+ GDRL+E +INKSL LG VI +L + + K IP+R+S LT+LL+ SL G+SKT+M
Sbjct: 256 VVGDRLRETQNINKSLSCLGDVIHALGQPDSTKR-HIPFRNSKLTYLLQYSLTGDSKTLM 314
Query: 118 IAAISPADVNYSETLSTLRYANRA 141
ISP+ + +ETL++LR+A++
Sbjct: 315 FVNISPSSSHINETLNSLRFASKV 338
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 58 ITGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIM 117
+ GDRL+E +INKSL LG VI +L + + K IP+R+S LT+LL+ SL G+SKT+M
Sbjct: 255 VVGDRLRETQNINKSLSCLGDVIHALGQPDSTKR-HIPFRNSKLTYLLQYSLTGDSKTLM 313
Query: 118 IAAISPADVNYSETLSTLRYANRA 141
ISP+ + +ETL++LR+A++
Sbjct: 314 FVNISPSSSHINETLNSLRFASKV 337
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 58 ITGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIM 117
+ GDRL+E +INKSL LG VI +L + + K IP+R+S LT+LL+ SL G+SKT+M
Sbjct: 256 VVGDRLRETQNINKSLSCLGDVIHALGQPDSTKR-HIPFRNSKLTYLLQYSLTGDSKTLM 314
Query: 118 IAAISPADVNYSETLSTLRYANRA 141
ISP+ + +ETL++LR+A++
Sbjct: 315 FVNISPSSSHINETLNSLRFASKV 338
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Query: 58 ITGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIM 117
+ GDRL+E +INKSL LG VI +L + + K IP+R+S LT+LL+ SL G+SKT+M
Sbjct: 312 VVGDRLRETQNINKSLSALGDVIHALGQPDSTKR-HIPFRNSKLTYLLQYSLTGDSKTLM 370
Query: 118 IAAISPADVNYSETLSTLRYANR 140
ISP+ + +ETL++LR+A++
Sbjct: 371 FVNISPSSSHINETLNSLRFASK 393
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Query: 58 ITGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIM 117
+ G+RL+E INKSL LG VI +L +K IP+R+S LT+LL+ SL G+SKT+M
Sbjct: 280 VVGERLRETQSINKSLSCLGDVIHALNSPDGQKR-HIPFRNSKLTYLLQYSLIGSSKTLM 338
Query: 118 IAAISPADVNYSETLSTLRYANRAKN 143
ISPA ++ +ET+++LR+A++ N
Sbjct: 339 FVNISPAALHLNETINSLRFASKVNN 364
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
Query: 58 ITGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIM 117
+ GDRL+E +I KSL LG VI +L + + K IP+R+S LT+LL+ SL G+SKT+M
Sbjct: 256 VVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKR-HIPFRNSKLTYLLQYSLTGDSKTLM 314
Query: 118 IAAISPADVNYSETLSTLRYANRA 141
ISP+ + +ETL++LR+A++
Sbjct: 315 FVNISPSSSHINETLNSLRFASKV 338
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 58/80 (72%), Gaps = 4/80 (5%)
Query: 61 DRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAA 120
+RL+E IN SL TLG VI +L + K + +PYR+S LT+LL++SLGG++K +M
Sbjct: 297 ERLRETQAINSSLSTLGLVIMAL----SNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVN 352
Query: 121 ISPADVNYSETLSTLRYANR 140
ISP + N SE+L++LR+A++
Sbjct: 353 ISPLEENVSESLNSLRFASK 372
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Query: 57 SITGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTI 116
++TG+RL+E +INKSL LG VI +L K +IP+R+S LT+LL+ SL G+SKT+
Sbjct: 258 AVTGERLRETQNINKSLSCLGDVIYALNTPDAGKR-YIPFRNSKLTYLLQYSLVGDSKTL 316
Query: 117 MIAAISPADVNYSETLSTLRYANRA 141
M I P + SETL++LR+A++
Sbjct: 317 MFVNIPPDPNHISETLNSLRFASKV 341
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 50/81 (61%), Gaps = 5/81 (6%)
Query: 65 EGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS-LGGNSKTIMIAAISP 123
EGA INKSL+ L I +L + P+R S LT +L+DS +G NS+T MIA ISP
Sbjct: 344 EGAEINKSLLALKECIRALG----RNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISP 399
Query: 124 ADVNYSETLSTLRYANRAKNI 144
+ TL+TLRYANR K +
Sbjct: 400 GMASCENTLNTLRYANRVKEL 420
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 65 EGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS-LGGNSKTIMIAAISP 123
EGA INKSL+ L I +L + P+R+S LT +L+DS +G NS+T MIA ISP
Sbjct: 326 EGAEINKSLLALKECIRALGQ----NKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISP 381
Query: 124 ADVNYSETLSTLRYANRAKNI 144
+ TL+TLRYA+R K +
Sbjct: 382 GISSCEYTLNTLRYADRVKEL 402
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 65 EGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS-LGGNSKTIMIAAISP 123
EGA INKSL+ L I +L + P+R+S LT +L+DS +G NS+T MIA ISP
Sbjct: 306 EGAEINKSLLALKECIRALGQ----NKAHTPFRESKLTQVLRDSFIGENSRTCMIATISP 361
Query: 124 ADVNYSETLSTLRYANRAKNI 144
+ TL+TLRYA+R K +
Sbjct: 362 GISSCEYTLNTLRYADRVKEL 382
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 65 EGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS-LGGNSKTIMIAAISP 123
EGA INKSL+ L I +L + P+R+S LT +L+DS +G NS+T MIA ISP
Sbjct: 254 EGAEINKSLLALKECIRALGQ----NKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISP 309
Query: 124 ADVNYSETLSTLRYANRAKNI 144
+ TL+TLRYA+R K +
Sbjct: 310 GISSCEYTLNTLRYADRVKEL 330
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Query: 65 EGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPA 124
+GA+IN+SL+ L I ++ IP+RDS LT +L+D G SK+IMIA ISP
Sbjct: 256 DGANINRSLLALKECIRAMDS----DKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPT 311
Query: 125 DVNYSETLSTLRYANRAKN 143
+TL+TLRY++R KN
Sbjct: 312 ISCCEQTLNTLRYSSRVKN 330
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 64 KEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISP 123
+EG +IN L+++ V+ S+A T IPYRDSVLT +L+ SL S +A ISP
Sbjct: 259 QEGVNINLGLLSINKVVMSMA----AGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISP 314
Query: 124 ADVNYSETLSTLRYANRAKNI 144
+ SETLSTLR+ AK +
Sbjct: 315 HQCDLSETLSTLRFGTSAKKL 335
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 64 KEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISP 123
+EG +IN L+++ V+ S+A T IPYRDSVLT +L+ SL S +A ISP
Sbjct: 259 QEGVNINLGLLSINKVVMSMA----AGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISP 314
Query: 124 ADVNYSETLSTLRYANRAK 142
+ SETLSTLR+ AK
Sbjct: 315 HQCDLSETLSTLRFGTSAK 333
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 4/80 (5%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
T R+ E +IN+SL L +VI +L + K IPYR+S LT LL SLGGNSKT+M
Sbjct: 309 TSTRMTETKNINRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMF 364
Query: 119 AAISPADVNYSETLSTLRYA 138
+SP + E++ +LR+A
Sbjct: 365 INVSPFQDCFQESVKSLRFA 384
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 4/80 (5%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
T R+ E +IN+SL L +VI +L + K IPYR+S LT LL SLGGNSKT+M
Sbjct: 298 TSTRMTETKNINRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMF 353
Query: 119 AAISPADVNYSETLSTLRYA 138
+SP + E++ +LR+A
Sbjct: 354 INVSPFQDCFQESVKSLRFA 373
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 4/80 (5%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
T R+ E +IN+SL L +VI +L + K IPYR+S LT LL SLGGNSKT+M
Sbjct: 301 TSTRMTETKNINRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMF 356
Query: 119 AAISPADVNYSETLSTLRYA 138
+SP + E++ +LR+A
Sbjct: 357 INVSPFQDCFQESVKSLRFA 376
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 4/80 (5%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
T R+ E +IN+SL L +VI +L + K IPYR+S LT LL SLGGNSKT+M
Sbjct: 295 TSTRMTETKNINRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMF 350
Query: 119 AAISPADVNYSETLSTLRYA 138
+SP + E++ +LR+A
Sbjct: 351 INVSPFQDCFQESVKSLRFA 370
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 60 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 119
G LKE +INKSL L I +L + +K IP+R LT LKDSLGGN +++
Sbjct: 278 GQVLKEATYINKSLSFLEQAIIALGD---QKRDHIPFRQCKLTHALKDSLGGNCNMVLVT 334
Query: 120 AISPADVNYSETLSTLRYANRAK 142
I ETLS+LR+A+R K
Sbjct: 335 NIYGEAAQLEETLSSLRFASRMK 357
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
T R+ E +I +SL L +VI +L + K IPYR+S LT LL SLGGNSKT+M
Sbjct: 298 TSTRMTETKNIKRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMF 353
Query: 119 AAISPADVNYSETLSTLRYA 138
+SP + E++ +LR+A
Sbjct: 354 INVSPFQDCFQESVKSLRFA 373
>pdb|4EGX|A Chain A, Crystal Structure Of Kif1a Cc1-Fha Tandem
pdb|4EGX|B Chain B, Crystal Structure Of Kif1a Cc1-Fha Tandem
pdb|4EGX|C Chain C, Crystal Structure Of Kif1a Cc1-Fha Tandem
pdb|4EGX|D Chain D, Crystal Structure Of Kif1a Cc1-Fha Tandem
Length = 184
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 203 ALQAKQEQEKV---LTEEWAEKWRETQKILQEQQAL----GLRMGKDGT--GVVLDSDRP 253
A++ +E EK+ L E W EK R T+ I E++AL G+ M +DG GV P
Sbjct: 10 AIERLKETEKIIAELNETWEEKLRRTEAIRMEREALLAEMGVAMREDGGTLGVFSPKKTP 69
Query: 254 HLVRIDDDLYSTGVTLY 270
HLV +++D + LY
Sbjct: 70 HLVNLNEDPLMSECLLY 86
>pdb|2C6N|A Chain A, Structure Of Human Somatic Angiontensin-I Converting
Enzyme N Domain With Lisinopril
pdb|2C6N|B Chain B, Structure Of Human Somatic Angiontensin-I Converting
Enzyme N Domain With Lisinopril
pdb|2C6F|A Chain A, Structure Of Human Somatic Angiontensin-I Converting
Enzyme N Domain
pdb|2C6F|B Chain B, Structure Of Human Somatic Angiontensin-I Converting
Enzyme N Domain
Length = 612
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 171 AMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQEKVLTEEWAEKWRETQKILQ 230
A L + NS A Q L + + + A +QE+ +L++E+AE W + K L
Sbjct: 17 AQLFAQSYNSSAEQVLFQSVAASWAHDTNITAENARRQEEAALLSQEFAEAWGQKAKELY 76
Query: 231 E 231
E
Sbjct: 77 E 77
>pdb|3C7A|A Chain A, A Structural Basis For Substrate And Stereo Selectivity In
Octopine Dehydrogenase (Odh-Nadh)
pdb|3C7D|B Chain B, A Structural Basis For Substrate And Stereo Selectivity In
Octopine Dehydrogenase (Odh-Nadh-Pyruvate)
pdb|3C7C|B Chain B, A Structural Basis For Substrate And Stereo Selectivity In
Octopine Dehydrogenase (Odh-Nadh-L-Arginine)
Length = 404
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 195 GNQPQMLAALQAKQE--QEKVLT--EEWAEKWRETQKILQEQQALGLRMGKDGTGVVLDS 250
GN L+ L A ++ + +VLT + AE+W K L + + KDGT + S
Sbjct: 11 GNGAHTLSGLAASRDGVEVRVLTLFADEAERW---TKALGADELTVIVNEKDGTQTEVKS 67
Query: 251 DRPHLVRIDDDLYSTGVTLYDSVLPSFALHMYVRVM 286
RP ++ D ++ +G + +P+FA Y + M
Sbjct: 68 -RPKVITKDPEIAISGADVVILTVPAFAHEGYFQAM 102
>pdb|3IQD|B Chain B, Structure Of Octopine-Dehydrogenase In Complex With Nadh
And Agmatine
Length = 404
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 195 GNQPQMLAALQAKQE--QEKVLT--EEWAEKWRETQKILQEQQALGLRMGKDGTGVVLDS 250
GN L+ L A ++ + +VLT + AE+W K L + + KDGT + S
Sbjct: 11 GNGAHTLSGLAASRDGVEVRVLTLFADEAERW---TKALGADELTVIVNEKDGTQTEVKS 67
Query: 251 DRPHLVRIDDDLYSTGVTLYDSVLPSFALHMYVRVM 286
RP ++ D ++ +G + +P+FA Y + M
Sbjct: 68 -RPKVITKDPEIAISGADVVILTVPAFAHEGYFQAM 102
>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 251
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 1 MAVGDTMLNGCLTKD----KQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQYNQGIFY 56
+ +GDT+ CL + Q +P FV+GW ++++G + +GL ++ Y
Sbjct: 115 VELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVD-------Y 167
Query: 57 SITGDRLKEGAHINKSLVTLG--SVISSL 83
+ R G + +++V G VIS+
Sbjct: 168 ATCSQRDWWGTTVKETMVCAGGDGVISAC 196
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 191 QQTQGNQPQMLAALQAKQEQEKVLTEEWAEKWRETQKILQEQQALGLRMGKDGTGVVL 248
Q T+GN P LA + + E+ K+L + A + E + ++ L++ K G G++L
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENK-----EEKTPLQVAKGGLGLIL 220
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 191 QQTQGNQPQMLAALQAKQEQEKVLTEEWAEKWRETQKILQEQQALGLRMGKDGTGVVL 248
Q T+GN P LA + + E+ K+L + A + E + ++ L++ K G G++L
Sbjct: 169 QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENK-----EEKTPLQVAKGGLGLIL 221
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 191 QQTQGNQPQMLAALQAKQEQEKVLTEEWAEKWRETQKILQEQQALGLRMGKDGTGVVL 248
Q T+GN P LA + + E+ K L + A + E + ++ L++ K G G++L
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENK-----EEKTPLQVAKGGLGLIL 220
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 191 QQTQGNQPQMLAALQAKQEQEKVLTEEWAEKWRETQKILQEQQALGLRMGKDGTGVVL 248
Q T+GN P LA + + E+ K L + A + E + ++ L++ K G G++L
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENK-----EEKTPLQVAKGGLGLIL 220
>pdb|3CZ7|A Chain A, Molecular Basis For The Autoregulation Of The Protein
Acetyl Transferase Rtt109
Length = 364
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 144 IINKPTVNEDPNTRIIRELHDEITKLKAMLTSVKVNSVARQQL-LSKAQQTQGNQPQMLA 202
+ N P +DP R I +L +E LK L+S + RQ+ LS G LA
Sbjct: 240 VYNIPLFPDDPXARFIHQLAEEDRLLKVSLSSFWIELQERQEFKLSVTSSVXGISGYSLA 299
Query: 203 ALQAKQEQEKVLTEEWAEKWRETQKIL 229
V+ + +++R +K +
Sbjct: 300 TPSLFPSSADVIVPKSRKQFRAIKKYI 326
>pdb|3Q88|A Chain A, Glucose-6-Phosphate Isomerase From Francisella Tularensis
Complexed With Ribose 1,5-Bisphosphate.
pdb|3Q7I|A Chain A, Glucose-6-Phosphate Isomerase From Francisella Tularensis
Complexed With 6-Phosphogluconic Acid
Length = 543
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 137 YANRAKNIINKPTVNEDPNTRIIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGN 196
Y + +KN+IN + + L D K+K M K+NS + +L A + +
Sbjct: 43 YFDYSKNLINDYILKSLLESAEKSSLKD---KIKQMFNGAKINSTEHRAVLHTALRDLSS 99
Query: 197 QPQMLAALQAKQE--QEKVLTEEWAEK-----WR 223
P ++ +QE +EK +E EK WR
Sbjct: 100 TPLIVDGQDIRQEVTKEKQRVKELVEKVVSGRWR 133
>pdb|4F7A|A Chain A, Crystal Structure Of A Susd Homolog (Bvu_2203) From
Bacteroides Vulgatus Atcc 8482 At 1.85 A Resolution
Length = 511
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 198 PQMLAALQAKQEQEKVLTEEWAEKWRETQKILQEQQALG----LRMGKDGTGVVLDSD 251
P A+ +++ EK++T++W W E + EQ+ G ++ + + +D+D
Sbjct: 408 PNFDDAVNQEEQLEKIITQKWIACWPEGXEAWAEQRRTGYPKLFKVQTNNSNGTIDTD 465
>pdb|3I00|A Chain A, Crystal Structure Of The Huntingtin Interacting Protein 1
Coiled Coil Domain
pdb|3I00|B Chain B, Crystal Structure Of The Huntingtin Interacting Protein 1
Coiled Coil Domain
Length = 120
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 143 NIINKPTVNEDPNTRIIRELHDEITKLKAMLTSVKVNS 180
N ++ VN+D +I L+ EI+ LKA L ++K S
Sbjct: 1 NFNSQNGVNKDEKDHLIERLYREISGLKAQLENMKTES 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,291,247
Number of Sequences: 62578
Number of extensions: 326966
Number of successful extensions: 1197
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1057
Number of HSP's gapped (non-prelim): 97
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)