Query psy15556
Match_columns 288
No_of_seqs 280 out of 1714
Neff 6.6
Searched_HMMs 46136
Date Sat Aug 17 00:18:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0245|consensus 100.0 2.1E-71 4.6E-76 561.1 19.1 270 2-277 203-479 (1221)
2 KOG0241|consensus 100.0 1.3E-53 2.8E-58 427.2 20.2 255 2-276 207-469 (1714)
3 KOG4280|consensus 100.0 2.7E-48 5.8E-53 383.0 13.1 170 2-177 198-369 (574)
4 KOG0243|consensus 100.0 4.4E-46 9.5E-51 382.2 17.2 172 2-180 253-427 (1041)
5 PLN03188 kinesin-12 family pro 100.0 4.7E-42 1E-46 356.1 15.8 170 2-173 291-469 (1320)
6 KOG0242|consensus 100.0 8.2E-41 1.8E-45 339.3 11.9 169 2-179 196-367 (675)
7 KOG0240|consensus 100.0 6.4E-40 1.4E-44 318.1 17.3 144 2-154 196-341 (607)
8 cd01373 KISc_KLP2_like Kinesin 100.0 1.7E-39 3.6E-44 307.6 13.1 139 2-144 197-337 (337)
9 KOG0244|consensus 100.0 3.5E-40 7.5E-45 334.4 1.9 169 2-177 180-350 (913)
10 cd01370 KISc_KIP3_like Kinesin 100.0 6.3E-38 1.4E-42 296.9 12.6 139 2-144 198-338 (338)
11 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.1E-37 2.3E-42 296.6 13.1 145 2-153 206-352 (352)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.4E-37 3.1E-42 296.2 13.2 148 2-151 203-356 (356)
13 cd01368 KISc_KIF23_like Kinesi 100.0 6.3E-37 1.4E-41 290.9 12.5 141 2-142 199-345 (345)
14 cd01371 KISc_KIF3 Kinesin moto 100.0 1E-35 2.3E-40 281.1 13.0 137 2-144 195-333 (333)
15 cd01372 KISc_KIF4 Kinesin moto 100.0 1.7E-35 3.7E-40 280.1 12.6 143 2-145 193-341 (341)
16 cd01376 KISc_KID_like Kinesin 100.0 1.5E-35 3.2E-40 278.6 11.9 129 2-142 189-319 (319)
17 KOG0247|consensus 100.0 1.8E-34 3.9E-39 286.3 18.5 145 2-150 295-442 (809)
18 cd01369 KISc_KHC_KIF5 Kinesin 100.0 3E-35 6.5E-40 276.9 12.0 134 2-144 190-325 (325)
19 cd01375 KISc_KIF9_like Kinesin 100.0 4.9E-35 1.1E-39 276.7 12.5 134 2-142 199-334 (334)
20 cd01374 KISc_CENP_E Kinesin mo 100.0 6.6E-35 1.4E-39 274.2 12.7 137 2-144 183-321 (321)
21 cd01367 KISc_KIF2_like Kinesin 100.0 4.4E-35 9.6E-40 275.7 11.3 128 2-142 192-322 (322)
22 cd01366 KISc_C_terminal Kinesi 100.0 1.6E-34 3.5E-39 272.2 12.4 135 2-146 192-328 (329)
23 smart00129 KISc Kinesin motor, 100.0 5.7E-34 1.2E-38 268.8 13.6 144 2-151 190-335 (335)
24 KOG0239|consensus 100.0 2E-34 4.3E-39 292.1 8.2 140 2-151 506-647 (670)
25 PF00225 Kinesin: Kinesin moto 100.0 1.1E-33 2.4E-38 266.6 8.8 139 2-144 194-335 (335)
26 cd01363 Motor_domain Myosin an 100.0 4.9E-32 1.1E-36 236.3 10.1 115 2-123 70-186 (186)
27 cd00106 KISc Kinesin motor dom 100.0 1.3E-31 2.8E-36 251.8 12.6 135 2-142 192-328 (328)
28 KOG0246|consensus 100.0 9.5E-32 2.1E-36 261.0 10.5 133 2-147 408-544 (676)
29 COG5059 KIP1 Kinesin-like prot 100.0 1.2E-30 2.6E-35 261.8 13.4 143 2-152 200-344 (568)
30 COG5059 KIP1 Kinesin-like prot 84.9 0.13 2.9E-06 52.5 -2.3 71 3-83 493-565 (568)
31 PF12325 TMF_TATA_bd: TATA ele 81.1 19 0.00042 29.4 9.4 26 150-175 9-34 (120)
32 PF13851 GAS: Growth-arrest sp 77.2 24 0.00052 31.3 9.5 14 158-171 28-41 (201)
33 PRK10884 SH3 domain-containing 72.0 46 0.001 29.7 10.0 28 152-179 88-115 (206)
34 KOG2129|consensus 64.8 1.1E+02 0.0024 30.4 11.5 22 157-178 253-274 (552)
35 PF09726 Macoilin: Transmembra 63.3 64 0.0014 34.1 10.5 24 156-179 417-440 (697)
36 KOG2751|consensus 63.1 1.7E+02 0.0036 29.2 12.4 74 93-175 83-161 (447)
37 PF09789 DUF2353: Uncharacteri 62.9 92 0.002 29.8 10.5 41 195-235 126-166 (319)
38 COG2433 Uncharacterized conser 62.0 89 0.0019 32.5 10.7 8 42-49 231-238 (652)
39 PF15079 DUF4546: Domain of un 56.7 50 0.0011 28.7 6.9 56 158-223 48-103 (205)
40 PF12325 TMF_TATA_bd: TATA ele 56.5 1.1E+02 0.0024 25.0 10.2 24 156-179 22-45 (120)
41 PF00038 Filament: Intermediat 53.3 1.3E+02 0.0028 27.8 9.9 36 197-232 257-292 (312)
42 KOG2391|consensus 53.0 54 0.0012 31.6 7.1 35 147-181 208-242 (365)
43 COG2433 Uncharacterized conser 52.8 72 0.0016 33.1 8.4 13 42-54 255-268 (652)
44 KOG2264|consensus 50.0 1.9E+02 0.0042 30.0 10.8 18 258-275 187-204 (907)
45 KOG1962|consensus 49.7 91 0.002 28.1 7.7 9 165-173 135-143 (216)
46 PF14282 FlxA: FlxA-like prote 49.4 79 0.0017 25.0 6.7 24 155-178 17-40 (106)
47 PF06810 Phage_GP20: Phage min 48.6 1.7E+02 0.0036 24.8 9.5 39 188-226 44-82 (155)
48 COG1196 Smc Chromosome segrega 47.4 1.8E+02 0.004 32.5 11.3 19 254-272 1036-1055(1163)
49 PRK10636 putative ABC transpor 44.6 96 0.0021 32.2 8.2 24 199-222 602-625 (638)
50 PF12004 DUF3498: Domain of un 44.2 7.5 0.00016 39.2 0.0 21 158-178 370-390 (495)
51 PRK10884 SH3 domain-containing 43.0 2E+02 0.0042 25.7 8.8 18 161-178 90-107 (206)
52 PF13094 CENP-Q: CENP-Q, a CEN 43.0 2E+02 0.0043 24.1 8.9 26 199-224 59-84 (160)
53 PF10392 COG5: Golgi transport 42.6 1.9E+02 0.004 23.6 11.0 96 130-227 6-104 (132)
54 PF05667 DUF812: Protein of un 42.1 2E+02 0.0044 29.8 9.9 25 196-220 395-419 (594)
55 PF07946 DUF1682: Protein of u 41.5 2.3E+02 0.005 26.8 9.6 24 61-85 164-187 (321)
56 TIGR02231 conserved hypothetic 41.5 2.9E+02 0.0064 27.7 11.0 25 155-179 69-93 (525)
57 PF04102 SlyX: SlyX; InterPro 40.2 93 0.002 22.6 5.3 8 247-254 61-68 (69)
58 PF06785 UPF0242: Uncharacteri 39.0 84 0.0018 30.3 6.0 21 156-176 133-153 (401)
59 PF10168 Nup88: Nuclear pore c 38.2 1.6E+02 0.0034 31.3 8.6 10 134-143 537-546 (717)
60 PF07106 TBPIP: Tat binding pr 37.1 2.5E+02 0.0055 23.6 8.8 10 76-85 35-44 (169)
61 PF09738 DUF2051: Double stran 36.7 2.4E+02 0.0053 26.7 8.9 66 158-226 78-143 (302)
62 TIGR02449 conserved hypothetic 36.6 1.1E+02 0.0024 22.3 5.1 17 160-176 17-33 (65)
63 TIGR03752 conj_TIGR03752 integ 36.2 4.2E+02 0.0092 26.7 10.7 20 159-178 61-80 (472)
64 PF14662 CCDC155: Coiled-coil 35.6 3.2E+02 0.0069 24.3 9.3 28 195-222 81-108 (193)
65 COG3074 Uncharacterized protei 35.6 1.9E+02 0.004 21.6 8.7 24 201-224 48-71 (79)
66 PRK11637 AmiB activator; Provi 34.6 3.8E+02 0.0083 26.2 10.3 20 157-176 47-66 (428)
67 PF15188 CCDC-167: Coiled-coil 34.5 88 0.0019 24.1 4.5 20 157-176 5-24 (85)
68 KOG0977|consensus 34.4 1.4E+02 0.003 30.7 7.2 72 159-230 298-370 (546)
69 KOG0995|consensus 34.1 3.9E+02 0.0084 27.7 10.2 24 158-181 295-318 (581)
70 PF08317 Spc7: Spc7 kinetochor 33.9 3.7E+02 0.0081 25.3 9.8 7 104-110 105-111 (325)
71 PF11932 DUF3450: Protein of u 33.6 3.3E+02 0.0072 24.5 9.1 17 160-176 52-68 (251)
72 PLN03230 acetyl-coenzyme A car 33.5 1.9E+02 0.0041 28.8 7.7 40 133-172 56-95 (431)
73 PRK00736 hypothetical protein; 33.2 1.4E+02 0.0031 21.6 5.4 6 249-254 62-67 (68)
74 KOG4302|consensus 32.2 2.4E+02 0.0051 29.8 8.5 58 199-263 100-157 (660)
75 PF04111 APG6: Autophagy prote 32.1 4.1E+02 0.0088 25.1 9.7 18 159-176 52-69 (314)
76 PF15290 Syntaphilin: Golgi-lo 31.7 2.3E+02 0.0049 26.7 7.5 7 158-164 69-75 (305)
77 PF14988 DUF4515: Domain of un 31.7 3.7E+02 0.008 23.9 10.3 21 157-177 40-60 (206)
78 PF08614 ATG16: Autophagy prot 31.6 3.4E+02 0.0075 23.5 9.7 23 156-178 115-137 (194)
79 KOG0994|consensus 31.6 4.1E+02 0.0089 30.2 10.3 17 133-149 1179-1195(1758)
80 KOG0288|consensus 31.6 3.9E+02 0.0084 26.6 9.4 20 245-267 148-167 (459)
81 PF09731 Mitofilin: Mitochondr 31.2 5.3E+02 0.011 26.2 11.0 26 153-178 247-272 (582)
82 PRK05431 seryl-tRNA synthetase 30.6 5.1E+02 0.011 25.5 10.4 21 158-178 29-49 (425)
83 KOG3990|consensus 30.1 2.3E+02 0.005 26.4 7.1 21 156-176 224-244 (305)
84 PF03915 AIP3: Actin interacti 29.9 4.8E+02 0.01 26.0 10.0 69 164-232 220-291 (424)
85 KOG0971|consensus 29.9 2.3E+02 0.0049 31.1 8.0 23 158-180 225-247 (1243)
86 PF09726 Macoilin: Transmembra 29.9 4.6E+02 0.01 27.8 10.4 19 159-177 547-565 (697)
87 COG1579 Zn-ribbon protein, pos 29.8 4E+02 0.0086 24.4 8.7 8 265-272 227-234 (239)
88 PF04420 CHD5: CHD5-like prote 29.5 1.1E+02 0.0024 26.0 4.9 26 153-178 36-61 (161)
89 KOG4360|consensus 29.5 2.8E+02 0.0061 28.4 8.2 17 65-81 80-96 (596)
90 PF09755 DUF2046: Uncharacteri 29.0 2.8E+02 0.0061 26.4 7.8 23 156-178 228-250 (310)
91 PF03195 DUF260: Protein of un 28.9 60 0.0013 25.6 2.9 78 93-177 21-98 (101)
92 PF03961 DUF342: Protein of un 28.8 2.8E+02 0.0061 27.4 8.3 20 158-177 335-354 (451)
93 COG3883 Uncharacterized protei 28.7 4.8E+02 0.011 24.3 9.9 63 156-221 37-99 (265)
94 KOG0995|consensus 28.1 5.6E+02 0.012 26.5 10.2 28 208-235 293-320 (581)
95 TIGR03319 YmdA_YtgF conserved 27.4 6.1E+02 0.013 25.8 10.5 9 165-173 59-67 (514)
96 PF04849 HAP1_N: HAP1 N-termin 27.2 4.1E+02 0.0089 25.3 8.6 12 64-75 79-90 (306)
97 PRK04325 hypothetical protein; 27.1 2.3E+02 0.005 20.9 5.7 7 248-254 67-73 (74)
98 COG1422 Predicted membrane pro 27.0 2.7E+02 0.0059 24.9 6.9 19 156-174 71-89 (201)
99 PRK00295 hypothetical protein; 26.3 2.1E+02 0.0046 20.8 5.2 6 249-254 62-67 (68)
100 PLN02678 seryl-tRNA synthetase 26.1 6.7E+02 0.015 25.1 10.7 23 196-218 72-94 (448)
101 PF10146 zf-C4H2: Zinc finger- 26.0 5E+02 0.011 23.5 9.8 75 156-240 31-106 (230)
102 PF11068 YlqD: YlqD protein; 26.0 3.8E+02 0.0082 22.1 9.2 36 144-179 7-42 (131)
103 PF13851 GAS: Growth-arrest sp 25.8 4.6E+02 0.01 23.1 10.1 20 156-175 47-66 (201)
104 PRK02119 hypothetical protein; 25.2 2.8E+02 0.0061 20.4 5.9 14 161-174 6-19 (73)
105 PRK09039 hypothetical protein; 24.9 4.4E+02 0.0096 25.2 8.6 17 159-175 139-155 (343)
106 PF15619 Lebercilin: Ciliary p 24.8 4.8E+02 0.01 22.9 9.3 24 158-181 13-36 (194)
107 PF10186 Atg14: UV radiation r 24.4 5.2E+02 0.011 23.2 10.0 7 131-137 21-27 (302)
108 KOG2185|consensus 24.2 4.4E+02 0.0095 26.3 8.3 34 114-147 323-356 (486)
109 PF04508 Pox_A_type_inc: Viral 23.9 1.2E+02 0.0026 17.6 2.8 18 159-176 3-20 (23)
110 COG5185 HEC1 Protein involved 23.9 7.7E+02 0.017 25.2 10.0 23 157-179 330-352 (622)
111 PRK00106 hypothetical protein; 23.7 8E+02 0.017 25.2 10.5 9 165-173 80-88 (535)
112 PF06785 UPF0242: Uncharacteri 23.5 6.9E+02 0.015 24.3 9.8 21 202-222 155-175 (401)
113 PF10498 IFT57: Intra-flagella 23.3 6.6E+02 0.014 24.3 9.5 7 79-85 105-111 (359)
114 KOG0163|consensus 22.5 8.4E+02 0.018 26.6 10.4 15 247-261 1023-1037(1259)
115 PF11221 Med21: Subunit 21 of 22.5 4.5E+02 0.0097 21.7 8.5 34 201-234 103-136 (144)
116 PRK12704 phosphodiesterase; Pr 22.3 8.4E+02 0.018 24.8 10.5 79 157-235 57-136 (520)
117 PF15619 Lebercilin: Ciliary p 22.0 5.5E+02 0.012 22.6 10.6 19 159-177 21-39 (194)
118 PRK11637 AmiB activator; Provi 21.9 7.5E+02 0.016 24.1 12.8 15 159-173 56-70 (428)
119 PF02403 Seryl_tRNA_N: Seryl-t 21.7 2.1E+02 0.0045 22.1 4.8 67 156-222 35-101 (108)
120 PF12240 Angiomotin_C: Angiomo 21.6 3.4E+02 0.0073 24.3 6.5 32 197-228 59-93 (205)
121 PF05557 MAD: Mitotic checkpoi 21.6 3.4E+02 0.0074 28.6 7.7 71 157-227 566-638 (722)
122 TIGR00414 serS seryl-tRNA synt 21.5 2.7E+02 0.0059 27.4 6.6 19 199-217 73-91 (418)
123 PF07888 CALCOCO1: Calcium bin 21.1 7.7E+02 0.017 25.4 9.7 85 157-241 371-456 (546)
124 PF10458 Val_tRNA-synt_C: Valy 20.8 3.2E+02 0.0069 19.4 6.1 20 157-176 4-23 (66)
125 PF07200 Mod_r: Modifier of ru 20.7 4.7E+02 0.01 21.3 8.9 31 198-228 58-88 (150)
126 PRK05431 seryl-tRNA synthetase 20.7 2.9E+02 0.0063 27.2 6.6 23 156-178 34-56 (425)
127 PF10267 Tmemb_cc2: Predicted 20.6 8.2E+02 0.018 24.1 9.6 77 157-233 4-82 (395)
128 COG5185 HEC1 Protein involved 20.6 9.2E+02 0.02 24.6 10.3 12 204-215 339-350 (622)
129 PHA02562 46 endonuclease subun 20.6 6.3E+02 0.014 25.2 9.2 10 101-110 152-161 (562)
130 TIGR00414 serS seryl-tRNA synt 20.5 8.2E+02 0.018 24.0 10.2 16 161-176 34-49 (418)
131 PF07208 DUF1414: Protein of u 20.2 72 0.0015 21.5 1.5 16 70-85 6-21 (44)
No 1
>KOG0245|consensus
Probab=100.00 E-value=2.1e-71 Score=561.10 Aligned_cols=270 Identities=43% Similarity=0.599 Sum_probs=237.5
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhhHHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVTLGSV 79 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~L~~v 79 (288)
+||||+||+.|||||+||||...+... ....+......|+|+|||| |||+..+|+.|+|++||.+|||||++||+|
T Consensus 203 TtAATnMNdtSSRSHaVFtIvftQk~~--~~~~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkV 280 (1221)
T KOG0245|consen 203 TTAATNMNDTSSRSHAVFTIVFTQKKH--DQDTGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKV 280 (1221)
T ss_pred hhhhhccccccccceeEEEEEEEeeec--cccCCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHH
Confidence 689999999999999999999999543 2233345789999999999 999999999999999999999999999999
Q ss_pred HHHHhhhhc---CCCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhccccccccccCCccH
Q psy15556 80 ISSLAELST---KKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNT 156 (288)
Q Consensus 80 I~~L~~~~~---~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak~i~~~~~~n~~~~~ 156 (288)
|+||++.++ ++..+||||||.|||||++.||||+||+|||+|||++.||+|||||||||+|||+|+|+|+||+||++
T Consensus 281 ISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpna 360 (1221)
T KOG0245|consen 281 ISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNA 360 (1221)
T ss_pred HHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccH
Confidence 999999775 45569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15556 157 RIIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQEKVLTEEWAEKWRETQKILQEQQALG 236 (288)
Q Consensus 157 ~~i~~l~~ei~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~e~~~e~~~~~~e~~~l~ 236 (288)
++||+|++|+.+||..+............ .......+.+.++++++|++.|+.+++++++|+|||++++++..+++++
T Consensus 361 KLIRELreEv~rLksll~~~~~~~~~~~~-~p~~~~~~~~~e~~~~~L~E~Ek~mael~etW~EKl~~aEair~e~~~~- 438 (1221)
T KOG0245|consen 361 KLIRELREEVARLKSLLRAQGLGDIAVEG-SPSALLSQPEIEELRERLQETEKIMAELNETWEEKLREAEAIRMEREAL- 438 (1221)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccC-CcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-
Confidence 99999999999999999765443221000 0001123456788999999999999999999999999999999988766
Q ss_pred cccccCCcceeeCC--CCCceeecCCCccccceEEEEecCCcc
Q psy15556 237 LRMGKDGTGVVLDS--DRPHLVRIDDDLYSTGVTLYDSVLPSF 277 (288)
Q Consensus 237 ~~~~~~~~~~~~~~--~~p~LvnlneDp~~s~~~~y~~~~~~~ 277 (288)
+ .+.|+++..|. ++||||||||||+|||||+|+||-+.|
T Consensus 439 L--~emGva~~~D~~kk~phLVNLneDPllSe~LlY~ikeG~T 479 (1221)
T KOG0245|consen 439 L--AEMGVAVREDGGKKTPHLVNLNEDPLLSECLLYYIKEGET 479 (1221)
T ss_pred H--HhcCceeeecCCccCcceeccCCCchhhccEEEEeccCce
Confidence 2 36788888888 999999999999999999999998865
No 2
>KOG0241|consensus
Probab=100.00 E-value=1.3e-53 Score=427.18 Aligned_cols=255 Identities=40% Similarity=0.597 Sum_probs=226.5
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhhHHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVTLGSV 79 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~L~~v 79 (288)
+|++|+||..|||||++|.|.|.++.. ....+......|+|+|||| |||+.++|+.|.|++||.+||+||++||.|
T Consensus 207 tvaatnmn~EssrsHaVFslvvtQ~l~--D~ktg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglV 284 (1714)
T KOG0241|consen 207 TVAATNMNEESSRSHAVFSLVVTQTLY--DLKTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLV 284 (1714)
T ss_pred eeeeecccccccccceeEEEEEeeEEe--ccccCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHH
Confidence 689999999999999999999999543 2233334457899999999 999999999999999999999999999999
Q ss_pred HHHHhhhhc--CCCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhccccccccccCCccHH
Q psy15556 80 ISSLAELST--KKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTR 157 (288)
Q Consensus 80 I~~L~~~~~--~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak~i~~~~~~n~~~~~~ 157 (288)
|.+|++... ++..+||||||.|||||+|+|||||+|+||+||||+.++|+||++|||||+|||+|+|.+++|++|+..
T Consensus 285 IsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnar 364 (1714)
T KOG0241|consen 285 ISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNAR 364 (1714)
T ss_pred HHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHH
Confidence 999998653 446799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q psy15556 158 IIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQEKVLTEEWAEKWRETQKILQEQQ---- 233 (288)
Q Consensus 158 ~i~~l~~ei~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~e~~~e~~~~~~e~~---- 233 (288)
.|+++++|++.|+.+|.+... ....++.+.+++.++.++++..+|+|++.+++.+.+|++
T Consensus 365 virElReEve~lr~qL~~ae~----------------~~~~el~e~l~esekli~ei~~twEEkl~ktE~in~erq~~L~ 428 (1714)
T KOG0241|consen 365 VIRELREEVEKLREQLEQAEA----------------MKLPELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQAQLE 428 (1714)
T ss_pred HHHHHHHHHHHHHHHHhhhhh----------------ccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999975221 234567789999999999999999999999999888875
Q ss_pred HhccccccCCcceeeCCCCCceeecCCCccccceEEEEecCCc
Q psy15556 234 ALGLRMGKDGTGVVLDSDRPHLVRIDDDLYSTGVTLYDSVLPS 276 (288)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~p~LvnlneDp~~s~~~~y~~~~~~ 276 (288)
.+++.+.. -|+++..+..||||+|.||-+.+.++|||+..+
T Consensus 429 ~~gis~~~--sgikv~dDK~ylvnlnadP~lnellvyyl~~~t 469 (1714)
T KOG0241|consen 429 SMGISLEN--SGIKVGDDKCYLVNLNADPALNELLVYYLKDHT 469 (1714)
T ss_pred HHHHHHhc--ccccccccceEEEeccCCccHHHHHHHhhcCce
Confidence 34555443 456667788999999999999999999998765
No 3
>KOG4280|consensus
Probab=100.00 E-value=2.7e-48 Score=383.00 Aligned_cols=170 Identities=44% Similarity=0.583 Sum_probs=157.5
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhhHHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVTLGSV 79 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~L~~v 79 (288)
+||+|.||..|||||+||||+|++.. ...++......|+|+|||| |||..++++.|+|++||.+||+||++||+|
T Consensus 198 ~vgat~mn~~SsRSH~ift~~i~~~~---~~~~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~v 274 (574)
T KOG4280|consen 198 RVGATSMNEESSRSHAIFTIHIESSE---KSDGGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNV 274 (574)
T ss_pred chhhccCCcccccceEEEEEEEEeec---ccCCCccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHH
Confidence 58999999999999999999999922 1133445678999999999 999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhccccccccccCCccHHHH
Q psy15556 80 ISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRII 159 (288)
Q Consensus 80 I~~L~~~~~~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak~i~~~~~~n~~~~~~~i 159 (288)
|.+|++. ...||||||||||+||||+|||||+|+|||||+|+..+++||++||+||+|||.|+|+|++|+++....+
T Consensus 275 I~aLvd~---~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~ 351 (574)
T KOG4280|consen 275 ISALVDG---SKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPKDALL 351 (574)
T ss_pred HHHHhcc---ccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcchhhH
Confidence 9999983 3339999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy15556 160 RELHDEITKLKAMLTSVK 177 (288)
Q Consensus 160 ~~l~~ei~~L~~~l~~~~ 177 (288)
++|++||+.|+.++....
T Consensus 352 ~~lq~ei~~Lk~~l~~~~ 369 (574)
T KOG4280|consen 352 RELQEEIERLKKELDPGG 369 (574)
T ss_pred HHHHHHHHHHHHhhcccc
Confidence 999999999999998753
No 4
>KOG0243|consensus
Probab=100.00 E-value=4.4e-46 Score=382.16 Aligned_cols=172 Identities=39% Similarity=0.504 Sum_probs=158.9
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhhHHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVTLGSV 79 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~L~~v 79 (288)
.||+|.||..|||||+||+|+|..+. ...++...+..|+|+|||| ||-..+.|+.|.|.+||+.||+||++||+|
T Consensus 253 rtAaTl~N~~SSRSHsIFsItvhike---~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRV 329 (1041)
T KOG0243|consen 253 RTAATLMNDQSSRSHSIFSITVHIKE---NTPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRV 329 (1041)
T ss_pred HHHHHHhhhhccccceEEEEEEEEec---CCCcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHH
Confidence 48999999999999999999998743 2344556788999999999 999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhccccccccccCCc-cHHH
Q psy15556 80 ISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDP-NTRI 158 (288)
Q Consensus 80 I~~L~~~~~~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak~i~~~~~~n~~~-~~~~ 158 (288)
|+||.+ +..|||||+|||||||||+|||..||+|||||||+..+++||+|||.||.|||.|+|+|.+|+.. ...+
T Consensus 330 InALVe----~s~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~l 405 (1041)
T KOG0243|consen 330 INALVE----HSGHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTL 405 (1041)
T ss_pred HHHHHc----cCCCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHH
Confidence 999998 78899999999999999999999999999999999999999999999999999999999999875 5678
Q ss_pred HHHHHHHHHHHHHHHhhhhhch
Q psy15556 159 IRELHDEITKLKAMLTSVKVNS 180 (288)
Q Consensus 159 i~~l~~ei~~L~~~l~~~~~~~ 180 (288)
++.|-.||++|+..|...+..+
T Consensus 406 lKd~~~EIerLK~dl~AaReKn 427 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKN 427 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhC
Confidence 9999999999999998776544
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=4.7e-42 Score=356.05 Aligned_cols=170 Identities=42% Similarity=0.573 Sum_probs=148.6
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhhHHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVTLGSV 79 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~L~~v 79 (288)
++|+|.+|..|||||+||+|+|+++... ..++......|+|+|||| |||..++++.|.+++||++||+||++||+|
T Consensus 291 ~tasT~mN~~SSRSHaIFtI~Ves~~k~--~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnV 368 (1320)
T PLN03188 291 RTGATSINAESSRSHSVFTCVVESRCKS--VADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNL 368 (1320)
T ss_pred eeccCCCCCccCCCceeEEEEEEEeecc--cCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHH
Confidence 5899999999999999999999985542 233445567899999999 999999999999999999999999999999
Q ss_pred HHHHhhhh-cCCCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhccccccccccCCccH--
Q psy15556 80 ISSLAELS-TKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNT-- 156 (288)
Q Consensus 80 I~~L~~~~-~~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak~i~~~~~~n~~~~~-- 156 (288)
|.+|++.+ .++..||||||||||+||+|+|||||+|+|||||||+..+++||++||+||+||+.|+|+|++|+....
T Consensus 369 I~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~v 448 (1320)
T PLN03188 369 INILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDV 448 (1320)
T ss_pred HHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhH
Confidence 99999754 345679999999999999999999999999999999999999999999999999999999999986532
Q ss_pred ----HHHHHHHHHHHHHHHHH
Q psy15556 157 ----RIIRELHDEITKLKAML 173 (288)
Q Consensus 157 ----~~i~~l~~ei~~L~~~l 173 (288)
.+|++|++|+.+|+...
T Consensus 449 n~LrelIr~Lk~EL~rLK~~~ 469 (1320)
T PLN03188 449 NFLREVIRQLRDELQRVKANG 469 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 35666666666666654
No 6
>KOG0242|consensus
Probab=100.00 E-value=8.2e-41 Score=339.31 Aligned_cols=169 Identities=41% Similarity=0.535 Sum_probs=150.2
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhhHHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVTLGSV 79 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~L~~v 79 (288)
+||.|.+|..|||||+||+|.|++...... . ..|+|+|||| |||+..++..|.|++||++||+||++||+|
T Consensus 196 ~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~------~-~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtV 268 (675)
T KOG0242|consen 196 TTGETNLNEQSSRSHAILRITVESRGREAS------S-RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTV 268 (675)
T ss_pred cccccccccccchhhheeeEEEEecccccc------c-hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHH
Confidence 579999999999999999999999665321 1 7799999999 999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhccccccccccCCcc-HHH
Q psy15556 80 ISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPN-TRI 158 (288)
Q Consensus 80 I~~L~~~~~~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak~i~~~~~~n~~~~-~~~ 158 (288)
|++|++. ....||||||||||||||++|||||+|+|||||+|+..+|+||.+||.||+|||.|++++.+|.... ..+
T Consensus 269 I~~Ls~~--~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~ 346 (675)
T KOG0242|consen 269 INKLSEG--KRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKAL 346 (675)
T ss_pred HHHHccc--cccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhh
Confidence 9999872 2355999999999999999999999999999999999999999999999999999999999998654 345
Q ss_pred HHHHHHHHHHHHHHHhhhhhc
Q psy15556 159 IRELHDEITKLKAMLTSVKVN 179 (288)
Q Consensus 159 i~~l~~ei~~L~~~l~~~~~~ 179 (288)
+..++.++..|+.++...+..
T Consensus 347 ~~~~~~~i~~l~~e~~~~~~~ 367 (675)
T KOG0242|consen 347 LKYLQREIAELEAELERLKKK 367 (675)
T ss_pred hHHHHHHHHHHHHHHHhhccc
Confidence 555568899999888775443
No 7
>KOG0240|consensus
Probab=100.00 E-value=6.4e-40 Score=318.09 Aligned_cols=144 Identities=40% Similarity=0.463 Sum_probs=135.4
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhhHHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVTLGSV 79 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~L~~v 79 (288)
.||.|+||..|||||.||+|+|.+... .......|+|.|||| ||+.+++|+.|..+.||++||+||++||+|
T Consensus 196 ~va~t~mn~~sSRSHsIF~i~VkQ~n~------e~~~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnv 269 (607)
T KOG0240|consen 196 HVAVTNMNEHSSRSHSIFLIHVKQENV------EDKRKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNV 269 (607)
T ss_pred hhhhccccccccccceEEEEEEEeccc------cchhhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHH
Confidence 478999999999999999999999554 335678999999999 999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhccccccccccCCc
Q psy15556 80 ISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDP 154 (288)
Q Consensus 80 I~~L~~~~~~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak~i~~~~~~n~~~ 154 (288)
|++|++ ++..|||||||||||+|+|+|||||+|.+|.|++|+.-+-.||.+||+|+.|||.|+|.+.+|...
T Consensus 270 I~aLa~---g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~ 341 (607)
T KOG0240|consen 270 INALAE---GPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLEL 341 (607)
T ss_pred HHHHhc---CCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhccccccccchhhhhhHh
Confidence 999998 558899999999999999999999999999999999999999999999999999999999988754
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.7e-39 Score=307.56 Aligned_cols=139 Identities=40% Similarity=0.557 Sum_probs=127.6
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhhHHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVTLGSV 79 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~L~~v 79 (288)
++|+|.+|..|||||+||+|+|++... .+.......|+|+|||| |||..++++.|.+++|+++||+||++|++|
T Consensus 197 ~~~~t~~n~~SSRSH~i~~i~v~~~~~----~~~~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~v 272 (337)
T cd01373 197 KVAATSMNSESSRSHAVFTCTIESWEK----KASSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHV 272 (337)
T ss_pred CcccCcCCCCCCCccEEEEEEEEEeec----CCCCCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHH
Confidence 479999999999999999999988543 22223567899999999 999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhccc
Q psy15556 80 ISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 144 (288)
Q Consensus 80 I~~L~~~~~~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak~i 144 (288)
|.+|++...++..|||||+||||+||+|+|||||+|+||+||||+..+++||++||+||.|||+|
T Consensus 273 i~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 273 IMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred HHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 99999866556789999999999999999999999999999999999999999999999999986
No 9
>KOG0244|consensus
Probab=100.00 E-value=3.5e-40 Score=334.40 Aligned_cols=169 Identities=43% Similarity=0.567 Sum_probs=156.6
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhhHHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVTLGSV 79 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~L~~v 79 (288)
+|++|+||++|||||+|||+.+++.... .......|+|+|||| |||.++++++|.|++||.+||.+|++||+|
T Consensus 180 tvasTnMN~qssRshAifti~lkq~kk~-----~~~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnV 254 (913)
T KOG0244|consen 180 TVASTNMNAQSSRSHAIFTITLKQRKKL-----SKRSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNV 254 (913)
T ss_pred HHHHHhcchhhhhhhHHHHHHHHHHHHh-----hccchhhhhhheeeccccccccccccchhhhhhccCcchHHHHHHHH
Confidence 5899999999999999999999885542 223356799999999 999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhccccccccccCCccHHHH
Q psy15556 80 ISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRII 159 (288)
Q Consensus 80 I~~L~~~~~~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak~i~~~~~~n~~~~~~~i 159 (288)
|++|.+.+ +..||||||||||+||||+||||+.|+||+||||++.+..||++||+||.||++|+|+|++|.++....+
T Consensus 255 IsaLg~~k--k~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~ 332 (913)
T KOG0244|consen 255 ISALGEAK--KGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVNQDPKSFEM 332 (913)
T ss_pred HHHHHhhh--cCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHhcccccccccHHHHHH
Confidence 99999843 3679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy15556 160 RELHDEITKLKAMLTSVK 177 (288)
Q Consensus 160 ~~l~~ei~~L~~~l~~~~ 177 (288)
..++.+++.|+.++....
T Consensus 333 ~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 333 LKLKAQLEPLQVELLSKA 350 (913)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999987765
No 10
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=6.3e-38 Score=296.91 Aligned_cols=139 Identities=44% Similarity=0.560 Sum_probs=126.8
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhhHHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVTLGSV 79 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~L~~v 79 (288)
++++|.+|..|||||+||+|+|++.... .+.......|+|+|||| |||..+++..|.+++|+++||+||++|++|
T Consensus 198 ~~~~t~~n~~SSRSH~i~~i~i~~~~~~---~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~v 274 (338)
T cd01370 198 TQEPTEANATSSRSHAVLQITVRQKDRT---ASINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNC 274 (338)
T ss_pred ccccccccCccCcceEEEEEEEEEEecC---CCCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHH
Confidence 5789999999999999999999986542 22345678899999999 999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhccc
Q psy15556 80 ISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 144 (288)
Q Consensus 80 I~~L~~~~~~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak~i 144 (288)
|.+|++.+. +..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 275 i~~L~~~~~-~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 275 INALVDGKK-KNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred HHHHHhccC-CCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999997332 3479999999999999999999999999999999999999999999999999986
No 11
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.1e-37 Score=296.58 Aligned_cols=145 Identities=43% Similarity=0.520 Sum_probs=133.1
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhhHHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVTLGSV 79 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~L~~v 79 (288)
++++|.+|..|||||+||+|.|.+.... ..+......|+|+|||| ||+.++.++.|.+++|++.||+||++|++|
T Consensus 206 ~~~~t~~n~~sSRSH~i~~i~i~~~~~~---~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~v 282 (352)
T cd01364 206 KTAATLMNDQSSRSHSIFSITIHIKETT---ISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRV 282 (352)
T ss_pred ccccCcCCCCCCCCceEEEEEEEEeccC---CCCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHH
Confidence 4689999999999999999999985432 22334456799999999 999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhccccccccccCC
Q psy15556 80 ISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNED 153 (288)
Q Consensus 80 I~~L~~~~~~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak~i~~~~~~n~~ 153 (288)
|.+|++ +..|||||+|+||+||+|+|||||+|+||+||||...+++||++||+||++|++|+|+|.+|.+
T Consensus 283 i~al~~----~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~~ 352 (352)
T cd01364 283 INALVE----KSPHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQK 352 (352)
T ss_pred HHHHHc----CCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCCC
Confidence 999987 5679999999999999999999999999999999999999999999999999999999999864
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.4e-37 Score=296.22 Aligned_cols=148 Identities=51% Similarity=0.685 Sum_probs=134.7
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhhHHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVTLGSV 79 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~L~~v 79 (288)
++++|.+|.+|||||+||+|+|.+.... +.........|+|+|||| |||.++.+..|.+++|+.+||+||++|++|
T Consensus 203 ~~~~t~~n~~SSRSH~i~~l~v~~~~~~--~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~v 280 (356)
T cd01365 203 TTASTNMNDTSSRSHAVFTIVLTQKKLD--KETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKV 280 (356)
T ss_pred cccCCCCCCCcCCceEEEEEEEEEEecc--cCCCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHH
Confidence 4689999999999999999999985442 222345678999999999 999999999999999999999999999999
Q ss_pred HHHHhhhhc----CCCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhcccccccccc
Q psy15556 80 ISSLAELST----KKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVN 151 (288)
Q Consensus 80 I~~L~~~~~----~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak~i~~~~~~n 151 (288)
|.+|++.+. ++..|||||+||||+||+|+|||||+|+||+||+|...+++||++||+||.++++|++.|++|
T Consensus 281 i~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 281 ISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred HHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 999998542 356899999999999999999999999999999999999999999999999999999999876
No 13
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=6.3e-37 Score=290.88 Aligned_cols=141 Identities=29% Similarity=0.373 Sum_probs=125.7
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecC--CCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhhHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSH--GDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVTLG 77 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~--~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~L~ 77 (288)
++++|.+|..|||||+||+|+|.+....... ....+....|+|+|||| |||..++++.|.+++|+++||+||++|+
T Consensus 199 ~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~ 278 (345)
T cd01368 199 RVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLG 278 (345)
T ss_pred eeccccCcCCCCCceEEEEEEEEEeccCcccccccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHH
Confidence 4789999999999999999999985542110 11235678899999999 9999999999999999999999999999
Q ss_pred HHHHHHhhhhcC--CCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhc
Q psy15556 78 SVISSLAELSTK--KSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAK 142 (288)
Q Consensus 78 ~vI~~L~~~~~~--~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak 142 (288)
+||.+|++.+.. +..||||||||||+||+|+|||||+|+||+||||...+++||++||+||.+|+
T Consensus 279 ~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 279 KCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred HHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999986532 57899999999999999999999999999999999999999999999999985
No 14
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1e-35 Score=281.12 Aligned_cols=137 Identities=51% Similarity=0.626 Sum_probs=125.4
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhhHHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVTLGSV 79 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~L~~v 79 (288)
++++|.+|+.|||||+||+|+|++.... .+..+....|+|+|||| |||..+++..|.+++|+++||+||++|++|
T Consensus 195 ~~~~t~~n~~ssRSH~i~~i~v~~~~~~---~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~v 271 (333)
T cd01371 195 SVGATNMNEDSSRSHSIFTITIECSEKG---EDGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNV 271 (333)
T ss_pred ccccccccCCCCCCcEEEEEEEEEEecc---CCCCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHH
Confidence 4789999999999999999999986542 12345677899999999 999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhccc
Q psy15556 80 ISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 144 (288)
Q Consensus 80 I~~L~~~~~~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak~i 144 (288)
|.+|++ ++..|||||+||||+||+|+|||||+|+||+||+|...+++||++||+||+|||.|
T Consensus 272 i~al~~---~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 272 ISALVD---GKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHh---CCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 999986 34459999999999999999999999999999999999999999999999999986
No 15
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1.7e-35 Score=280.08 Aligned_cols=143 Identities=45% Similarity=0.608 Sum_probs=128.1
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeec----CCCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhh
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWS----HGDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVT 75 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s----~~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~ 75 (288)
++++|.+|..|||||+||+|+|.+...... ..+.......|+|+|||| ||+.++++..|.+++|+.+||+||++
T Consensus 193 ~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~a 272 (341)
T cd01372 193 TTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLA 272 (341)
T ss_pred ccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHH
Confidence 468999999999999999999999665311 112345678899999999 99999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCCCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhcccc
Q psy15556 76 LGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNII 145 (288)
Q Consensus 76 L~~vI~~L~~~~~~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak~i~ 145 (288)
|++||.+|+..++ +..|||||+|+||+||+|+|||||+|+||+||||...+++||++||+||++||+|+
T Consensus 273 L~~vi~al~~~~~-~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 273 LGNVISALGDESK-KGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred HHHHHHHHHhcCC-CCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 9999999987432 35799999999999999999999999999999999999999999999999999985
No 16
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=1.5e-35 Score=278.62 Aligned_cols=129 Identities=40% Similarity=0.508 Sum_probs=120.7
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhhHHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVTLGSV 79 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~L~~v 79 (288)
++++|.+|..|||||+||+|.|.+... .....|+|+|||| |||..+++..|.+++|+++||+||++|++|
T Consensus 189 ~~~~t~~n~~SSRSH~i~~i~v~~~~~--------~~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~v 260 (319)
T cd01376 189 TVAATKLNDNSSRSHAVLRIKVTQPAS--------NIQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKV 260 (319)
T ss_pred ccccCcCCCccCCCeEEEEEEEEEECC--------CceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHH
Confidence 468999999999999999999988543 2367899999999 999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhc
Q psy15556 80 ISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAK 142 (288)
Q Consensus 80 I~~L~~~~~~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak 142 (288)
|.+|+. +..|||||+|+||+||+|+|||||+|+||+||||...+++||++||+||+|||
T Consensus 261 i~aL~~----~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 261 VDALNK----GLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred HHHHhc----CCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 999986 56899999999999999999999999999999999999999999999999986
No 17
>KOG0247|consensus
Probab=100.00 E-value=1.8e-34 Score=286.33 Aligned_cols=145 Identities=29% Similarity=0.379 Sum_probs=133.6
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhhHHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVTLGSV 79 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~L~~v 79 (288)
++|+|.+|+.|||||+||+|.|-+..+. .+.+....|.|+|||| |||..+++++|.||+||++||.||++||+|
T Consensus 295 ~~asT~lN~~SSRSHsVFtIkl~q~~~~----~~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~C 370 (809)
T KOG0247|consen 295 RVASTKLNANSSRSHSVFTIKLVQAPRS----QDSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRC 370 (809)
T ss_pred hhhheeccccccccceeEEEEeeecccc----cccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHH
Confidence 5899999999999999999999986652 3567889999999999 999999999999999999999999999999
Q ss_pred HHHHhhhhc-CCCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhccccccccc
Q psy15556 80 ISSLAELST-KKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTV 150 (288)
Q Consensus 80 I~~L~~~~~-~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak~i~~~~~~ 150 (288)
|.+|.+++. +...+|||||||||++++.+|.|+.+.+||+||+|.+.+|+|+++.|+||.-|+.|...+.+
T Consensus 371 ie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~ 442 (809)
T KOG0247|consen 371 IDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPV 442 (809)
T ss_pred HHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCcc
Confidence 999999774 34579999999999999999999999999999999999999999999999999999765444
No 18
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=3e-35 Score=276.89 Aligned_cols=134 Identities=43% Similarity=0.531 Sum_probs=123.7
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhhHHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVTLGSV 79 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~L~~v 79 (288)
++++|.+|+.|||||+||+|+|++... ..+....|+|+|||| ||+.++.++.|.+++|++.||+||++|++|
T Consensus 190 ~~~~t~~n~~ssRSH~i~~i~v~~~~~------~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~v 263 (325)
T cd01369 190 AVASTNMNEESSRSHSIFLITLKQENV------ETGSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNV 263 (325)
T ss_pred ccccCcCCCccccccEEEEEEEEEEec------CCCCEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHH
Confidence 468999999999999999999998543 224567899999999 999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhccc
Q psy15556 80 ISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 144 (288)
Q Consensus 80 I~~L~~~~~~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak~i 144 (288)
|.+|++ +...|||||+|+||+||+|+|||+|+|+||+||+|...+++||++||+||+|||+|
T Consensus 264 i~aL~~---~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 264 INALTD---GKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHc---CCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 999987 23379999999999999999999999999999999999999999999999999986
No 19
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=4.9e-35 Score=276.72 Aligned_cols=134 Identities=36% Similarity=0.451 Sum_probs=122.9
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhhHHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVTLGSV 79 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~L~~v 79 (288)
++++|.+|..|||||+||+|+|++... .+.......|+|+|||| |||..+++..|.+++|+++||+||++|++|
T Consensus 199 ~~~~t~~n~~sSRSH~i~~l~v~~~~~----~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~v 274 (334)
T cd01375 199 TIAETSMNQASSRSHCIFTIHLESRSR----EAGSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQV 274 (334)
T ss_pred ccccCcCcCCcCcCeEEEEEEEEEEec----CCCCCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHH
Confidence 468899999999999999999998643 22345678899999999 999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhc
Q psy15556 80 ISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAK 142 (288)
Q Consensus 80 I~~L~~~~~~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak 142 (288)
|.+|++ +...||||||||||+||+|+|||||+|+||+||||...+++||++||+||+|++
T Consensus 275 i~~l~~---~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 275 INALSE---KARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred HHHHHh---CCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999987 224799999999999999999999999999999999999999999999999985
No 20
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=6.6e-35 Score=274.24 Aligned_cols=137 Identities=40% Similarity=0.535 Sum_probs=124.6
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhhHHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVTLGSV 79 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~L~~v 79 (288)
++++|.+|.+|||||+||+|+|.+.... .+..+....|+|+|||| |||..+.+ .|.+++|+.+||+||++|++|
T Consensus 183 ~~~~t~~n~~ssRSH~i~~i~v~~~~~~---~~~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~v 258 (321)
T cd01374 183 HVGETDFNERSSRSHTIFQLTIESRERG---DSESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTV 258 (321)
T ss_pred ccccCcCCCccccccEEEEEEEEEEecC---CCCCCcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHH
Confidence 4689999999999999999999985542 22346778899999999 99999998 999999999999999999999
Q ss_pred HHHHhhhhcCCCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhccc
Q psy15556 80 ISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 144 (288)
Q Consensus 80 I~~L~~~~~~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak~i 144 (288)
|.+|++.+ +..|||||+||||+||+|+|||||+|+||+||||...+++||++||+||++|++|
T Consensus 259 i~al~~~~--~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 259 ISKLSEGK--NSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred HHHHHhcC--CCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 99999722 2589999999999999999999999999999999999999999999999999986
No 21
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=4.4e-35 Score=275.74 Aligned_cols=128 Identities=38% Similarity=0.491 Sum_probs=118.5
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCcccccc-ccchhhcchhccccchhhHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYS-ITGDRLKEGAHINKSLVTLGS 78 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~-~~g~rl~E~~~IN~SL~~L~~ 78 (288)
++++|.+|..|||||+||+|+|.+... ....|+|+|||| |||..+.+ ..|.+++|+++||+||++|++
T Consensus 192 ~~~~t~~n~~SSRSH~i~~i~v~~~~~---------~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~ 262 (322)
T cd01367 192 TTGSTGANDQSSRSHAILQIILKNKKL---------NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKE 262 (322)
T ss_pred ccccCcCCCCcccceEEEEEEEEEecC---------CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHH
Confidence 478999999999999999999998442 456799999999 99998865 578999999999999999999
Q ss_pred HHHHHhhhhcCCCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhc
Q psy15556 79 VISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAK 142 (288)
Q Consensus 79 vI~~L~~~~~~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak 142 (288)
||.+|++ +..||||||||||+||+|+|||||+|+||+||||...+++||++||+||+|+|
T Consensus 263 vi~al~~----~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 263 CIRALAS----NKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred HHHHHhc----CCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 9999987 55899999999999999999999999999999999999999999999999986
No 22
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1.6e-34 Score=272.24 Aligned_cols=135 Identities=42% Similarity=0.593 Sum_probs=126.6
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhhHHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVTLGSV 79 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~L~~v 79 (288)
++++|.+|+.|||||+||+|+|.+... ..+....|+|+|||| ||+..+.++.|.+++|+..||+||++|++|
T Consensus 192 ~~~~t~~n~~sSRsH~i~~i~v~~~~~------~~~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~v 265 (329)
T cd01366 192 SVASTNMNEHSSRSHAVFQLKIRGTNL------QTGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDV 265 (329)
T ss_pred ccccccccCCCCCccEEEEEEEEEEcC------CCCcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHH
Confidence 468999999999999999999998553 145678899999999 999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhccccc
Q psy15556 80 ISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIIN 146 (288)
Q Consensus 80 I~~L~~~~~~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak~i~~ 146 (288)
|.+|+. +..|||||+|+||+||+|+|||+|+|+||+||||...+++||++||+||+++++|++
T Consensus 266 l~~l~~----~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 266 ISALRS----KDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVEL 328 (329)
T ss_pred HHHHhc----CCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccC
Confidence 999987 578999999999999999999999999999999999999999999999999999976
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=5.7e-34 Score=268.85 Aligned_cols=144 Identities=47% Similarity=0.589 Sum_probs=132.6
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhhHHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVTLGSV 79 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~L~~v 79 (288)
++++|.+|.+|||||+||+|+|++... .+..+....|+|+|||| +|+..+.++.|.+++|+..||+||.+|++|
T Consensus 190 ~~~~t~~n~~ssRsH~i~~l~v~~~~~----~~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~ 265 (335)
T smart00129 190 TVAATKMNEESSRSHAVFTITVESKIK----NSSSGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNV 265 (335)
T ss_pred ccccCCCCCCCCcceEEEEEEEEEEec----CCCCCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHH
Confidence 468999999999999999999998533 23446678999999999 999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhcccccccccc
Q psy15556 80 ISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVN 151 (288)
Q Consensus 80 I~~L~~~~~~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak~i~~~~~~n 151 (288)
|.+|++. .+..+||||+|+||+||+++|||+|+|+||+||+|...+++||++||+||+++++|+++|+++
T Consensus 266 l~~l~~~--~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 266 INALADG--QKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred HHHHHhc--CCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 9999862 356799999999999999999999999999999999999999999999999999999999875
No 24
>KOG0239|consensus
Probab=100.00 E-value=2e-34 Score=292.07 Aligned_cols=140 Identities=40% Similarity=0.558 Sum_probs=131.2
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhhHHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVTLGSV 79 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~L~~v 79 (288)
+||+|.+|.+|||||+||+|+|...+ ...+....+.++|||| |||..+++++|+|++|+.+||+||++||.|
T Consensus 506 sv~~T~~Ne~SSRSH~v~~v~v~g~~------~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdV 579 (670)
T KOG0239|consen 506 SVASTASNERSSRSHLVFRVRIRGIN------ELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDV 579 (670)
T ss_pred cccccccchhhhccceEEEEEEeccc------cCcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHH
Confidence 68999999999999999999988843 3457788999999999 999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhcccccccccc
Q psy15556 80 ISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVN 151 (288)
Q Consensus 80 I~~L~~~~~~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak~i~~~~~~n 151 (288)
|.+|+. +..||||||||||+||+|+|||++||.|+++|||...++.||+++|+||.|++.+...+..-
T Consensus 580 i~AL~~----k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~ 647 (670)
T KOG0239|consen 580 ISALAS----KRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARK 647 (670)
T ss_pred HHHHhh----cCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceecccccc
Confidence 999997 78899999999999999999999999999999999999999999999999999998776543
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=1.1e-33 Score=266.62 Aligned_cols=139 Identities=41% Similarity=0.518 Sum_probs=122.5
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccc-cchhhcchhccccchhhHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSI-TGDRLKEGAHINKSLVTLGS 78 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~-~g~rl~E~~~IN~SL~~L~~ 78 (288)
.+++|.+|..|||||+||+|+|.+..... .........|+|+|||| +|+..+.+. .|.+++|++.||+||.+|++
T Consensus 194 ~~~~t~~n~~sSRSH~i~~i~v~~~~~~~--~~~~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~ 271 (335)
T PF00225_consen 194 RTASTKMNARSSRSHAIFTIHVEQKDRDP--SDDEESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGN 271 (335)
T ss_dssp TCTSSSCTHHGGGSEEEEEEEEEEEETTT--TTEEEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccc--cccccceeecceeeeecccccccccccccccccccccceecchhhhhhh
Confidence 46789999999999999999999955421 11111368899999999 999999986 48899999999999999999
Q ss_pred HHHHHhhhhcCCCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhccc
Q psy15556 79 VISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 144 (288)
Q Consensus 79 vI~~L~~~~~~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak~i 144 (288)
||.+|++. ....+||||+||||+||+|+|||||+|+||+||+|...+++||++||+||.++|+|
T Consensus 272 vi~~L~~~--~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 272 VIRALAQG--SKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHCT--TSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred hHhhhhcc--ccchhhhhhcccccceecccccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 99999972 34789999999999999999999999999999999999999999999999999986
No 26
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=99.97 E-value=4.9e-32 Score=236.32 Aligned_cols=115 Identities=42% Similarity=0.570 Sum_probs=105.5
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhhHHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVTLGSV 79 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~L~~v 79 (288)
++++|.+|..|||||+||+|+|+++... .+..+....|+|+|||| ||+.++++..|.+++|++.||+||++|++|
T Consensus 70 ~~~~t~~N~~SSRsH~i~~i~v~~~~~~---~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~ 146 (186)
T cd01363 70 TTAATAMNEHSSRSHSVFRIHFGGKNAL---ASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNV 146 (186)
T ss_pred cccccCCCCccCcccEEEEEEEEEeecC---CCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHH
Confidence 4789999999999999999999986643 22335678899999999 999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCccccCCCcchhhhhcccCCCCcceEEEeecCC
Q psy15556 80 ISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISP 123 (288)
Q Consensus 80 I~~L~~~~~~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp 123 (288)
|.+|++ +..+||||+||||+||+|+|||||+|+||+||||
T Consensus 147 i~~l~~----~~~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 147 ISALAE----RDSHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred HHHHhc----CCCCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 999987 5679999999999999999999999999999999
No 27
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=99.97 E-value=1.3e-31 Score=251.81 Aligned_cols=135 Identities=46% Similarity=0.567 Sum_probs=122.2
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhhHHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVTLGSV 79 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~L~~v 79 (288)
++++|.+|+.|||||+||+|+|.+..... .......|+|+|||| +|+..+.+..|.++.|++.||+||.+|++|
T Consensus 192 ~~~~t~~n~~ssRSH~i~~i~v~~~~~~~----~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~v 267 (328)
T cd00106 192 TTASTAMNERSSRSHAIFTIHVEQRNTTN----DGRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNV 267 (328)
T ss_pred CcccCcCCCCcCcCcEEEEEEEEEEecCC----CCccEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHH
Confidence 46889999999999999999999955421 112478899999999 999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhc
Q psy15556 80 ISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAK 142 (288)
Q Consensus 80 I~~L~~~~~~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak 142 (288)
|.+|+... +..|||||+||||+||+|+|||+|+|+||+||+|...+++||++||+||+|||
T Consensus 268 l~~l~~~~--~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 268 ISALSSGQ--KKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred HHHHHhcC--CCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999721 14899999999999999999999999999999999999999999999999986
No 28
>KOG0246|consensus
Probab=99.97 E-value=9.5e-32 Score=261.00 Aligned_cols=133 Identities=37% Similarity=0.472 Sum_probs=118.8
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccc-cchhhcchhccccchhhHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSI-TGDRLKEGAHINKSLVTLGS 78 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~-~g~rl~E~~~IN~SL~~L~~ 78 (288)
+.|.|..|+.|||||+||+|.+.... +...+++++|||| +||...+.. ..+...||+.|||||++|..
T Consensus 408 tsG~TsANs~SSRSHAvfQIilr~~~---------~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKE 478 (676)
T KOG0246|consen 408 TSGQTSANSNSSRSHAVFQIILRKHG---------EFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKE 478 (676)
T ss_pred ccCcccCcccccccceeEeeeeecCC---------cceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHH
Confidence 46899999999999999999876611 2457899999999 999877754 44667799999999999999
Q ss_pred HHHHHhhhhcCCCccccCCCcchhhhhcccCCC-CcceEEEeecCCCCCChHhHHHHHHHHHHhcccccc
Q psy15556 79 VISSLAELSTKKSTFIPYRDSVLTWLLKDSLGG-NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINK 147 (288)
Q Consensus 79 vI~~L~~~~~~~~~~iPyRdSkLT~lL~d~LgG-n~kt~~I~~isp~~~~~~ETlsTL~fa~rak~i~~~ 147 (288)
||++|.. ...|+|||.||||.+|+|+|=| |++||||+||||+..+++.||+|||||+|+|.....
T Consensus 479 CIRaLg~----nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~ 544 (676)
T KOG0246|consen 479 CIRALGR----NKSHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVD 544 (676)
T ss_pred HHHHhcC----CCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCC
Confidence 9999975 7889999999999999999977 999999999999999999999999999999998643
No 29
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.97 E-value=1.2e-30 Score=261.84 Aligned_cols=143 Identities=41% Similarity=0.564 Sum_probs=131.9
Q ss_pred ceecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhhHHHH
Q psy15556 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVTLGSV 79 (288)
Q Consensus 2 ~v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~L~~v 79 (288)
.+++|.+|..|||||++|++++.+..+. .+....++++|||| ||++..++..|.|++||..||+||.+||+|
T Consensus 200 ~~~~te~n~~ssRshsi~~i~~~~~~~~------~~~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~v 273 (568)
T COG5059 200 TTASTEINDESSRSHSIFQIELASKNKV------SGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNV 273 (568)
T ss_pred ccccchhccccccceEEEEEEEEEeccC------ccceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHH
Confidence 4789999999999999999999996652 23334489999999 999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCccccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhccccccccccC
Q psy15556 80 ISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNE 152 (288)
Q Consensus 80 I~~L~~~~~~~~~~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak~i~~~~~~n~ 152 (288)
|++|.+ .++..|||||+||||++|+++|||+|+|+|||||+|...+++||.+||+||.+|+.|++.+..|.
T Consensus 274 I~~L~~--~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 274 INALGD--KKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred HHHHhc--cccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 999986 24678999999999999999999999999999999999999999999999999999999999995
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=84.85 E-value=0.13 Score=52.49 Aligned_cols=71 Identities=25% Similarity=0.323 Sum_probs=57.4
Q ss_pred eecccccCCCCCceeEEEEEEEeeeeeecCCCCCCceeeeeeEEeec--CCccccccccchhhcchhccccchhhHHHHH
Q psy15556 3 VGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQ--YNQGIFYSITGDRLKEGAHINKSLVTLGSVI 80 (288)
Q Consensus 3 v~~T~~N~~SSRSH~Iftl~V~~~~~~~s~~~~~~~~~~s~l~lVDL--sEr~~~~~~~g~rl~E~~~IN~SL~~L~~vI 80 (288)
.++++.|..++|+|++|........... .. . . ++.||| +||. .....|.++++..++|++|..++.+|
T Consensus 493 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~------~~-~-~-~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~ 562 (568)
T COG5059 493 SASTKLNLRSSRSHSKFRDHLNGSNSST------KE-L-S-LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVI 562 (568)
T ss_pred hcccchhhhhcccchhhhhcccchhhhh------HH-H-H-hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhh
Confidence 5678999999999999988654422210 11 1 1 799999 8999 88899999999999999999999999
Q ss_pred HHH
Q psy15556 81 SSL 83 (288)
Q Consensus 81 ~~L 83 (288)
.++
T Consensus 563 ~~~ 565 (568)
T COG5059 563 HAL 565 (568)
T ss_pred hhc
Confidence 875
No 31
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=81.14 E-value=19 Score=29.39 Aligned_cols=26 Identities=19% Similarity=0.502 Sum_probs=11.8
Q ss_pred ccCCccHHHHHHHHHHHHHHHHHHhh
Q psy15556 150 VNEDPNTRIIRELHDEITKLKAMLTS 175 (288)
Q Consensus 150 ~n~~~~~~~i~~l~~ei~~L~~~l~~ 175 (288)
.+..++..++.+|...|.++..++..
T Consensus 9 ~~~~~~~~~ve~L~s~lr~~E~E~~~ 34 (120)
T PF12325_consen 9 SSGGPSVQLVERLQSQLRRLEGELAS 34 (120)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 32
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=77.19 E-value=24 Score=31.28 Aligned_cols=14 Identities=36% Similarity=0.762 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q psy15556 158 IIRELHDEITKLKA 171 (288)
Q Consensus 158 ~i~~l~~ei~~L~~ 171 (288)
+|+.|+++|+.++.
T Consensus 28 lIksLKeei~emkk 41 (201)
T PF13851_consen 28 LIKSLKEEIAEMKK 41 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 33
>PRK10884 SH3 domain-containing protein; Provisional
Probab=72.04 E-value=46 Score=29.67 Aligned_cols=28 Identities=11% Similarity=0.240 Sum_probs=21.1
Q ss_pred CCccHHHHHHHHHHHHHHHHHHhhhhhc
Q psy15556 152 EDPNTRIIRELHDEITKLKAMLTSVKVN 179 (288)
Q Consensus 152 ~~~~~~~i~~l~~ei~~L~~~l~~~~~~ 179 (288)
..+....+.+++.|++.|++++......
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445567888999999999998876544
No 34
>KOG2129|consensus
Probab=64.83 E-value=1.1e+02 Score=30.43 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q psy15556 157 RIIRELHDEITKLKAMLTSVKV 178 (288)
Q Consensus 157 ~~i~~l~~ei~~L~~~l~~~~~ 178 (288)
..|+.|+.||++|+..+...+.
T Consensus 253 ~hi~~l~~EveRlrt~l~~Aqk 274 (552)
T KOG2129|consen 253 LHIDKLQAEVERLRTYLSRAQK 274 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3588899999999999976554
No 35
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=63.33 E-value=64 Score=34.11 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhc
Q psy15556 156 TRIIRELHDEITKLKAMLTSVKVN 179 (288)
Q Consensus 156 ~~~i~~l~~ei~~L~~~l~~~~~~ 179 (288)
...+.+|+.++++||.+|...+..
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~ 440 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQS 440 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhh
Confidence 456778999999999998876654
No 36
>KOG2751|consensus
Probab=63.07 E-value=1.7e+02 Score=29.22 Aligned_cols=74 Identities=19% Similarity=0.169 Sum_probs=33.8
Q ss_pred cccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhccccccccccCCc-----cHHHHHHHHHHHH
Q psy15556 93 FIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDP-----NTRIIRELHDEIT 167 (288)
Q Consensus 93 ~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak~i~~~~~~n~~~-----~~~~i~~l~~ei~ 167 (288)
..|||++-.-+=. .+-...|.+-+ .+..+-..|..-+.++..|...-.-++-| ...++.++.+|++
T Consensus 83 ~~p~r~~~~~~~~--------~~~~~~~~~~~-~~~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~ 153 (447)
T KOG2751|consen 83 SPPVRDSDTEHNL--------SFELGENGSDG-SNTKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVE 153 (447)
T ss_pred cCccccccccccc--------ccccccccchh-hhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHH
Confidence 4578765433332 22333333322 23333333455555665554332222222 2345666666666
Q ss_pred HHHHHHhh
Q psy15556 168 KLKAMLTS 175 (288)
Q Consensus 168 ~L~~~l~~ 175 (288)
.+..+...
T Consensus 154 ~~~~e~~~ 161 (447)
T KOG2751|consen 154 DAEDEVDT 161 (447)
T ss_pred HHHHHHHH
Confidence 66655443
No 37
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=62.92 E-value=92 Score=29.77 Aligned_cols=41 Identities=17% Similarity=0.299 Sum_probs=33.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15556 195 GNQPQMLAALQAKQEQEKVLTEEWAEKWRETQKILQEQQAL 235 (288)
Q Consensus 195 ~~~~~~~~~l~~~~~~~~~l~~~~~e~~~e~~~~~~e~~~l 235 (288)
.+.++++.+|+...++.+.+..+++.-+.+.++...||..+
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~y 166 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAY 166 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888999999999998888888888887654
No 38
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=61.96 E-value=89 Score=32.45 Aligned_cols=8 Identities=13% Similarity=0.434 Sum_probs=4.6
Q ss_pred eeeEEeec
Q psy15556 42 GLFHLIPQ 49 (288)
Q Consensus 42 s~l~lVDL 49 (288)
.+|-||||
T Consensus 231 ~rief~pl 238 (652)
T COG2433 231 DRIEFVPL 238 (652)
T ss_pred cccccccC
Confidence 45556666
No 39
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=56.74 E-value=50 Score=28.68 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15556 158 IIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQEKVLTEEWAEKWR 223 (288)
Q Consensus 158 ~i~~l~~ei~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~e~~~ 223 (288)
.-++|+.|+...+++|... .+.+.|...-.++-...|++-.+.+++++..+.|++.
T Consensus 48 ~T~eLkNeLREVREELkEK----------meEIKQIKdiMDKDFDKL~EFVEIMKeMQkDMDEKMD 103 (205)
T PF15079_consen 48 GTQELKNELREVREELKEK----------MEEIKQIKDIMDKDFDKLHEFVEIMKEMQKDMDEKMD 103 (205)
T ss_pred ccHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHhhh
Confidence 4566777777777766432 2333444444556678888899999999999988775
No 40
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=56.49 E-value=1.1e+02 Score=24.98 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhc
Q psy15556 156 TRIIRELHDEITKLKAMLTSVKVN 179 (288)
Q Consensus 156 ~~~i~~l~~ei~~L~~~l~~~~~~ 179 (288)
...|+++..|+..++.++..+...
T Consensus 22 ~s~lr~~E~E~~~l~~el~~l~~~ 45 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELARLEAE 45 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888889999999988876543
No 41
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=53.28 E-value=1.3e+02 Score=27.79 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=22.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15556 197 QPQMLAALQAKQEQEKVLTEEWAEKWRETQKILQEQ 232 (288)
Q Consensus 197 ~~~~~~~l~~~~~~~~~l~~~~~e~~~e~~~~~~e~ 232 (288)
.......+...+.++..+....+..+.+.+..+.-.
T Consensus 257 ~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K 292 (312)
T PF00038_consen 257 REEYQAEIAELEEELAELREEMARQLREYQELLDVK 292 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566667777777777777777766655543
No 42
>KOG2391|consensus
Probab=52.98 E-value=54 Score=31.57 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=25.6
Q ss_pred cccccCCccHHHHHHHHHHHHHHHHHHhhhhhchH
Q psy15556 147 KPTVNEDPNTRIIRELHDEITKLKAMLTSVKVNSV 181 (288)
Q Consensus 147 ~~~~n~~~~~~~i~~l~~ei~~L~~~l~~~~~~~~ 181 (288)
++.++.....++.++.++|++++..+.+.++....
T Consensus 208 rasvisa~~eklR~r~eeeme~~~aeq~slkRt~E 242 (365)
T KOG2391|consen 208 RASVISAVREKLRRRREEEMERLQAEQESLKRTEE 242 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34455666677888888999999988887766443
No 43
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=52.79 E-value=72 Score=33.10 Aligned_cols=13 Identities=0% Similarity=-0.401 Sum_probs=7.3
Q ss_pred eeeEEeec-CCccc
Q psy15556 42 GLFHLIPQ-YNQGI 54 (288)
Q Consensus 42 s~l~lVDL-sEr~~ 54 (288)
.-|.++|| .+-.+
T Consensus 255 tgiAvldldGevl~ 268 (652)
T COG2433 255 TGIAVLDLDGEVLD 268 (652)
T ss_pred eeEEEEecCCcEEe
Confidence 34667777 44444
No 44
>KOG2264|consensus
Probab=49.99 E-value=1.9e+02 Score=30.02 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=11.2
Q ss_pred cCCCccccceEEEEecCC
Q psy15556 258 IDDDLYSTGVTLYDSVLP 275 (288)
Q Consensus 258 lneDp~~s~~~~y~~~~~ 275 (288)
-+-=|+-||+-+|.-+.-
T Consensus 187 ySRCsltSgfPVYvyd~D 204 (907)
T KOG2264|consen 187 YSRCSLTSGFPVYVYDSD 204 (907)
T ss_pred cccccccCCceeEEeccc
Confidence 344477777777765544
No 45
>KOG1962|consensus
Probab=49.68 E-value=91 Score=28.13 Aligned_cols=9 Identities=44% Similarity=0.375 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q psy15556 165 EITKLKAML 173 (288)
Q Consensus 165 ei~~L~~~l 173 (288)
+.+.++..+
T Consensus 135 ~~~~lk~~~ 143 (216)
T KOG1962|consen 135 ENEALKKQL 143 (216)
T ss_pred HHHHHHHhh
Confidence 333333333
No 46
>PF14282 FlxA: FlxA-like protein
Probab=49.35 E-value=79 Score=24.99 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhh
Q psy15556 155 NTRIIRELHDEITKLKAMLTSVKV 178 (288)
Q Consensus 155 ~~~~i~~l~~ei~~L~~~l~~~~~ 178 (288)
....|..|...|..|+.+|..+..
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 377899999999999999987765
No 47
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=48.59 E-value=1.7e+02 Score=24.82 Aligned_cols=39 Identities=13% Similarity=0.277 Sum_probs=25.4
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15556 188 SKAQQTQGNQPQMLAALQAKQEQEKVLTEEWAEKWRETQ 226 (288)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~e~~~e~~ 226 (288)
..........+++..++...+.......+.|+.++.+..
T Consensus 44 ~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~ 82 (155)
T PF06810_consen 44 KDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMK 82 (155)
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333455677777777777777777777777665544
No 48
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=47.42 E-value=1.8e+02 Score=32.45 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=13.9
Q ss_pred ceeecC-CCccccceEEEEe
Q psy15556 254 HLVRID-DDLYSTGVTLYDS 272 (288)
Q Consensus 254 ~Lvnln-eDp~~s~~~~y~~ 272 (288)
.|...+ +||+.+|+-++--
T Consensus 1036 ~L~l~~~dd~l~~Giei~a~ 1055 (1163)
T COG1196 1036 ELELTEPDDPLTAGIEISAR 1055 (1163)
T ss_pred EEEeCCCCchhhcCcEEEEE
Confidence 566676 6798888877664
No 49
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=44.57 E-value=96 Score=32.16 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15556 199 QMLAALQAKQEQEKVLTEEWAEKW 222 (288)
Q Consensus 199 ~~~~~l~~~~~~~~~l~~~~~e~~ 222 (288)
++.+++.+.+.++.++.++|++--
T Consensus 602 ~~~~~~~~~~~~l~~~~~~w~~l~ 625 (638)
T PRK10636 602 ACLQQQASAKSGLEECEMAWLEAQ 625 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666666665433
No 50
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=44.16 E-value=7.5 Score=39.21 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy15556 158 IIRELHDEITKLKAMLTSVKV 178 (288)
Q Consensus 158 ~i~~l~~ei~~L~~~l~~~~~ 178 (288)
..++|++||..||+.|.....
T Consensus 370 ~~e~YEqEI~~LkErL~~S~r 390 (495)
T PF12004_consen 370 EVEKYEQEIQSLKERLRMSHR 390 (495)
T ss_dssp ---------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 345688888888887765443
No 51
>PRK10884 SH3 domain-containing protein; Provisional
Probab=43.04 E-value=2e+02 Score=25.68 Aligned_cols=18 Identities=11% Similarity=0.283 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhhhhh
Q psy15556 161 ELHDEITKLKAMLTSVKV 178 (288)
Q Consensus 161 ~l~~ei~~L~~~l~~~~~ 178 (288)
..+..+..|+.++..++.
T Consensus 90 ~~~~rlp~le~el~~l~~ 107 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTD 107 (206)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 344556666666655543
No 52
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=43.01 E-value=2e+02 Score=24.08 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15556 199 QMLAALQAKQEQEKVLTEEWAEKWRE 224 (288)
Q Consensus 199 ~~~~~l~~~~~~~~~l~~~~~e~~~e 224 (288)
...+.+++.+...+.+..+|++..+.
T Consensus 59 ~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 59 RDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33455555555555555555554443
No 53
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=42.58 E-value=1.9e+02 Score=23.60 Aligned_cols=96 Identities=18% Similarity=0.224 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHhccccccccccCCccHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHH---HHHhcCCchHHHHHHHH
Q psy15556 130 ETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKAMLTSVKVNSVARQQLLSK---AQQTQGNQPQMLAALQA 206 (288)
Q Consensus 130 ETlsTL~fa~rak~i~~~~~~n~~~~~~~i~~l~~ei~~L~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~ 206 (288)
+.+..-.||..+=...|.+....-.-...+.+|..-|+.+..++...-..+. ..++.. ....+.....+...+..
T Consensus 6 ~dFd~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~--~~LL~q~~~~~~~~~~l~~v~~~v~~ 83 (132)
T PF10392_consen 6 PDFDPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNH--EDLLSQASSIEELESVLQAVRSSVES 83 (132)
T ss_pred CCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4456678888877766666554444566788888888888888766533322 112221 22222233334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy15556 207 KQEQEKVLTEEWAEKWRETQK 227 (288)
Q Consensus 207 ~~~~~~~l~~~~~e~~~e~~~ 227 (288)
.+.-.+.++.+..+.+++.+.
T Consensus 84 L~~s~~RL~~eV~~Py~~~~~ 104 (132)
T PF10392_consen 84 LQSSYERLRSEVIEPYEKIQK 104 (132)
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 444455555555544444433
No 54
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=42.08 E-value=2e+02 Score=29.85 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=17.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q psy15556 196 NQPQMLAALQAKQEQEKVLTEEWAE 220 (288)
Q Consensus 196 ~~~~~~~~l~~~~~~~~~l~~~~~e 220 (288)
...++...++...+.+..|...|+.
T Consensus 395 ni~kL~~~v~~s~~rl~~L~~qWe~ 419 (594)
T PF05667_consen 395 NIAKLQALVEASEQRLVELAQQWEK 419 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556667788888888875
No 55
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=41.52 E-value=2.3e+02 Score=26.80 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=17.2
Q ss_pred hhhcchhccccchhhHHHHHHHHhh
Q psy15556 61 DRLKEGAHINKSLVTLGSVISSLAE 85 (288)
Q Consensus 61 ~rl~E~~~IN~SL~~L~~vI~~L~~ 85 (288)
.-+.|+.-|+..+.+ ..++.+|..
T Consensus 164 ~vmsEs~e~~~~il~-~~~~~~l~~ 187 (321)
T PF07946_consen 164 VVMSESNEVTDFILT-PELIKALNK 187 (321)
T ss_pred EEEEccHhHHHHHhC-hHHHHHHHh
Confidence 346677888888887 667777764
No 56
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=41.48 E-value=2.9e+02 Score=27.74 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=16.7
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhc
Q psy15556 155 NTRIIRELHDEITKLKAMLTSVKVN 179 (288)
Q Consensus 155 ~~~~i~~l~~ei~~L~~~l~~~~~~ 179 (288)
....+.+|++++..|+.+++.....
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~ 93 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDR 93 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777777777777777665543
No 57
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=40.15 E-value=93 Score=22.60 Aligned_cols=8 Identities=25% Similarity=0.430 Sum_probs=0.0
Q ss_pred eeCCCCCc
Q psy15556 247 VLDSDRPH 254 (288)
Q Consensus 247 ~~~~~~p~ 254 (288)
..+...||
T Consensus 61 ~~~~~PPH 68 (69)
T PF04102_consen 61 PEEEPPPH 68 (69)
T ss_dssp --------
T ss_pred CCCCCcCC
Confidence 34455666
No 58
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=38.96 E-value=84 Score=30.32 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy15556 156 TRIIRELHDEITKLKAMLTSV 176 (288)
Q Consensus 156 ~~~i~~l~~ei~~L~~~l~~~ 176 (288)
..+++++++|..+|+-+|..+
T Consensus 133 E~li~~~~EEn~~lqlqL~~l 153 (401)
T PF06785_consen 133 EGLIRHLREENQCLQLQLDAL 153 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHH
Confidence 344555555555555555443
No 59
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=38.23 E-value=1.6e+02 Score=31.34 Aligned_cols=10 Identities=20% Similarity=0.282 Sum_probs=4.1
Q ss_pred HHHHHHHhcc
Q psy15556 134 TLRYANRAKN 143 (288)
Q Consensus 134 TL~fa~rak~ 143 (288)
+|+|-.+|-+
T Consensus 537 ~l~lL~~a~~ 546 (717)
T PF10168_consen 537 CLELLSQATK 546 (717)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 60
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=37.12 E-value=2.5e+02 Score=23.61 Aligned_cols=10 Identities=30% Similarity=0.474 Sum_probs=4.4
Q ss_pred HHHHHHHHhh
Q psy15556 76 LGSVISSLAE 85 (288)
Q Consensus 76 L~~vI~~L~~ 85 (288)
+.+++..|++
T Consensus 35 v~k~Ld~L~~ 44 (169)
T PF07106_consen 35 VQKALDSLVE 44 (169)
T ss_pred HHHHHHHHHh
Confidence 3344444443
No 61
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=36.75 E-value=2.4e+02 Score=26.67 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15556 158 IIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQEKVLTEEWAEKWRETQ 226 (288)
Q Consensus 158 ~i~~l~~ei~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~e~~~e~~ 226 (288)
.++.++.++..+++.....+..+.. +-.......-..+-+...|.+.++.+.++.+++.++.++.+
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQ---LDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elE 143 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQ---LDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELE 143 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777776665544332221 11111111112334455666666666666666665555443
No 62
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=36.59 E-value=1.1e+02 Score=22.28 Aligned_cols=17 Identities=24% Similarity=0.173 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy15556 160 RELHDEITKLKAMLTSV 176 (288)
Q Consensus 160 ~~l~~ei~~L~~~l~~~ 176 (288)
.+|+.|...|++++...
T Consensus 17 ~~L~~EN~~Lr~q~~~~ 33 (65)
T TIGR02449 17 ERLKSENRLLRAQEKTW 33 (65)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555443
No 63
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=36.16 E-value=4.2e+02 Score=26.75 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q psy15556 159 IRELHDEITKLKAMLTSVKV 178 (288)
Q Consensus 159 i~~l~~ei~~L~~~l~~~~~ 178 (288)
+|-|-.++.+++.++..+..
T Consensus 61 lrTlva~~k~~r~~~~~l~~ 80 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLIS 80 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 64
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=35.65 E-value=3.2e+02 Score=24.28 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=13.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15556 195 GNQPQMLAALQAKQEQEKVLTEEWAEKW 222 (288)
Q Consensus 195 ~~~~~~~~~l~~~~~~~~~l~~~~~e~~ 222 (288)
+....+.++....+...+.+...|+.--
T Consensus 81 E~~~~L~aq~rqlEkE~q~L~~~i~~Lq 108 (193)
T PF14662_consen 81 EENRSLLAQARQLEKEQQSLVAEIETLQ 108 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555554433
No 65
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.55 E-value=1.9e+02 Score=21.58 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15556 201 LAALQAKQEQEKVLTEEWAEKWRE 224 (288)
Q Consensus 201 ~~~l~~~~~~~~~l~~~~~e~~~e 224 (288)
.+.|+...++++.-...|+++++.
T Consensus 48 reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 48 REALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666777777788877653
No 66
>PRK11637 AmiB activator; Provisional
Probab=34.58 E-value=3.8e+02 Score=26.17 Aligned_cols=20 Identities=5% Similarity=0.217 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q psy15556 157 RIIRELHDEITKLKAMLTSV 176 (288)
Q Consensus 157 ~~i~~l~~ei~~L~~~l~~~ 176 (288)
..+.+++.+++.++.++...
T Consensus 47 ~~l~~l~~qi~~~~~~i~~~ 66 (428)
T PRK11637 47 DQLKSIQQDIAAKEKSVRQQ 66 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555433
No 67
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=34.50 E-value=88 Score=24.08 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q psy15556 157 RIIRELHDEITKLKAMLTSV 176 (288)
Q Consensus 157 ~~i~~l~~ei~~L~~~l~~~ 176 (288)
..|..+.+.+.+.+..++..
T Consensus 5 ~eId~lEekl~~cr~~le~v 24 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAV 24 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHH
Confidence 34555666666666655543
No 68
>KOG0977|consensus
Probab=34.40 E-value=1.4e+02 Score=30.69 Aligned_cols=72 Identities=22% Similarity=0.297 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15556 159 IRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQ-TQGNQPQMLAALQAKQEQEKVLTEEWAEKWRETQKILQ 230 (288)
Q Consensus 159 i~~l~~ei~~L~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~l~~~~~e~~~e~~~~~~ 230 (288)
+++.+..+..|+..|..+...+......+..... ..++.....+.|..++.++.+|+++.+..+.+.++++.
T Consensus 298 l~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD 370 (546)
T KOG0977|consen 298 LRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLD 370 (546)
T ss_pred HHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444555555554444443433333322 22333444567788888889999888888888777654
No 69
>KOG0995|consensus
Probab=34.06 E-value=3.9e+02 Score=27.67 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhchH
Q psy15556 158 IIRELHDEITKLKAMLTSVKVNSV 181 (288)
Q Consensus 158 ~i~~l~~ei~~L~~~l~~~~~~~~ 181 (288)
.+..+..|++.-..+++.++..+.
T Consensus 295 ~l~~l~~Eie~kEeE~e~lq~~~d 318 (581)
T KOG0995|consen 295 KLEMLKSEIEEKEEEIEKLQKEND 318 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555544433
No 70
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=33.88 E-value=3.7e+02 Score=25.33 Aligned_cols=7 Identities=14% Similarity=0.401 Sum_probs=4.2
Q ss_pred hhcccCC
Q psy15556 104 LLKDSLG 110 (288)
Q Consensus 104 lL~d~Lg 110 (288)
|+++|+.
T Consensus 105 Lf~EY~~ 111 (325)
T PF08317_consen 105 LFREYYT 111 (325)
T ss_pred HHHHHHc
Confidence 6666654
No 71
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=33.59 E-value=3.3e+02 Score=24.51 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy15556 160 RELHDEITKLKAMLTSV 176 (288)
Q Consensus 160 ~~l~~ei~~L~~~l~~~ 176 (288)
..|..++..|+.+++.+
T Consensus 52 ~~L~~e~~~l~~e~e~L 68 (251)
T PF11932_consen 52 QELLAEYRQLEREIENL 68 (251)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 72
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=33.49 E-value=1.9e+02 Score=28.82 Aligned_cols=40 Identities=28% Similarity=0.420 Sum_probs=32.5
Q ss_pred HHHHHHHHhccccccccccCCccHHHHHHHHHHHHHHHHH
Q psy15556 133 STLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKAM 172 (288)
Q Consensus 133 sTL~fa~rak~i~~~~~~n~~~~~~~i~~l~~ei~~L~~~ 172 (288)
-.|+|-++.+-++++|+.+--...+-|.+|++.|+.|+..
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~l~fe~pi~ele~ki~el~~~ 95 (431)
T PLN03230 56 GALKILNRFKPLKNKPKPVTLPFEKPIVDLENRIDEVREL 95 (431)
T ss_pred cHHHHHHhcCCCCCCCCCCccchhhHHHHHHHHHHHHHhh
Confidence 4589999999999999977666677788888888887764
No 73
>PRK00736 hypothetical protein; Provisional
Probab=33.17 E-value=1.4e+02 Score=21.65 Aligned_cols=6 Identities=33% Similarity=0.656 Sum_probs=3.7
Q ss_pred CCCCCc
Q psy15556 249 DSDRPH 254 (288)
Q Consensus 249 ~~~~p~ 254 (288)
+...||
T Consensus 62 ~~~PPH 67 (68)
T PRK00736 62 VTKPPH 67 (68)
T ss_pred CCCcCC
Confidence 456676
No 74
>KOG4302|consensus
Probab=32.15 E-value=2.4e+02 Score=29.79 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcceeeCCCCCceeecCCCcc
Q psy15556 199 QMLAALQAKQEQEKVLTEEWAEKWRETQKILQEQQALGLRMGKDGTGVVLDSDRPHLVRIDDDLY 263 (288)
Q Consensus 199 ~~~~~l~~~~~~~~~l~~~~~e~~~e~~~~~~e~~~l~~~~~~~~~~~~~~~~~p~LvnlneDp~ 263 (288)
-+.+++......+..|+....++..+...+..+.+.+-..++ |. ...|+.++.|+-++
T Consensus 100 tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~--g~-----~~~~~~~~~D~~dl 157 (660)
T KOG4302|consen 100 TLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELG--GP-----EDLPSFLIADESDL 157 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CC-----ccCCcccccCcccc
Confidence 566777777888888888888898888888777665533322 21 34556666665544
No 75
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=32.09 E-value=4.1e+02 Score=25.13 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy15556 159 IRELHDEITKLKAMLTSV 176 (288)
Q Consensus 159 i~~l~~ei~~L~~~l~~~ 176 (288)
+..++.|.+.+.++|..+
T Consensus 52 l~~le~Ee~~l~~eL~~L 69 (314)
T PF04111_consen 52 LEKLEQEEEELLQELEEL 69 (314)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 76
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=31.73 E-value=2.3e+02 Score=26.73 Aligned_cols=7 Identities=43% Similarity=0.586 Sum_probs=3.7
Q ss_pred HHHHHHH
Q psy15556 158 IIRELHD 164 (288)
Q Consensus 158 ~i~~l~~ 164 (288)
.||.|+.
T Consensus 69 ~iRHLka 75 (305)
T PF15290_consen 69 CIRHLKA 75 (305)
T ss_pred HHHHHHH
Confidence 4555554
No 77
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=31.68 E-value=3.7e+02 Score=23.87 Aligned_cols=21 Identities=10% Similarity=0.265 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q psy15556 157 RIIRELHDEITKLKAMLTSVK 177 (288)
Q Consensus 157 ~~i~~l~~ei~~L~~~l~~~~ 177 (288)
.+...|...+..|+.++....
T Consensus 40 ~l~s~y~~q~~~Lq~qLlq~~ 60 (206)
T PF14988_consen 40 ELVSRYAKQTSELQDQLLQKE 60 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666554443
No 78
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=31.62 E-value=3.4e+02 Score=23.47 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q psy15556 156 TRIIRELHDEITKLKAMLTSVKV 178 (288)
Q Consensus 156 ~~~i~~l~~ei~~L~~~l~~~~~ 178 (288)
...+..|+.++..|+..+..+..
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~ 137 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEE 137 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666666555443
No 79
>KOG0994|consensus
Probab=31.61 E-value=4.1e+02 Score=30.20 Aligned_cols=17 Identities=35% Similarity=0.378 Sum_probs=10.8
Q ss_pred HHHHHHHHhcccccccc
Q psy15556 133 STLRYANRAKNIINKPT 149 (288)
Q Consensus 133 sTL~fa~rak~i~~~~~ 149 (288)
.|=+|-.+|+.|+...+
T Consensus 1179 rt~rl~~~A~~l~~tGv 1195 (1758)
T KOG0994|consen 1179 RTHRLINRAKELKQTGV 1195 (1758)
T ss_pred HHHHHHHHHHHhhhccC
Confidence 35566777777766443
No 80
>KOG0288|consensus
Probab=31.55 E-value=3.9e+02 Score=26.64 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=10.6
Q ss_pred ceeeCCCCCceeecCCCccccce
Q psy15556 245 GVVLDSDRPHLVRIDDDLYSTGV 267 (288)
Q Consensus 245 ~~~~~~~~p~LvnlneDp~~s~~ 267 (288)
|..-+...||+| +|-++|.+
T Consensus 148 ga~~~~~~d~~v---~~~lpS~~ 167 (459)
T KOG0288|consen 148 GAVPRTEDDHFV---EDTLPSRA 167 (459)
T ss_pred CCCccccCchhh---hcccchhh
Confidence 444444557766 45555544
No 81
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=31.25 E-value=5.3e+02 Score=26.22 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=17.9
Q ss_pred CccHHHHHHHHHHHHHHHHHHhhhhh
Q psy15556 153 DPNTRIIRELHDEITKLKAMLTSVKV 178 (288)
Q Consensus 153 ~~~~~~i~~l~~ei~~L~~~l~~~~~ 178 (288)
+.....+.....++..|..+|..+..
T Consensus 247 ~~~~~~i~~a~~~i~~L~~~l~~l~~ 272 (582)
T PF09731_consen 247 SDLNSLIAHAKERIDALQKELAELKE 272 (582)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777788888877766544
No 82
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=30.58 E-value=5.1e+02 Score=25.52 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy15556 158 IIRELHDEITKLKAMLTSVKV 178 (288)
Q Consensus 158 ~i~~l~~ei~~L~~~l~~~~~ 178 (288)
.+-++..+-.+++.++..++.
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~ 49 (425)
T PRK05431 29 ELLELDEERRELQTELEELQA 49 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554443
No 83
>KOG3990|consensus
Probab=30.11 E-value=2.3e+02 Score=26.36 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy15556 156 TRIIRELHDEITKLKAMLTSV 176 (288)
Q Consensus 156 ~~~i~~l~~ei~~L~~~l~~~ 176 (288)
...|..|++||++|+..|.+.
T Consensus 224 ~V~i~~lkeeia~Lkk~L~qk 244 (305)
T KOG3990|consen 224 MVKIQKLKEEIARLKKLLHQK 244 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 456889999999999998754
No 84
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=29.95 E-value=4.8e+02 Score=26.00 Aligned_cols=69 Identities=19% Similarity=0.324 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhhhhchHHHHHHH--HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy15556 164 DEITKLKAMLTSVKVNSVARQQLL--SKAQQTQGNQPQMLAALQAKQEQEKVLTEEWAEKWR-ETQKILQEQ 232 (288)
Q Consensus 164 ~ei~~L~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~e~~~-e~~~~~~e~ 232 (288)
..+..|++-++.++.....+.-.. ........+...+...|...+..+..+.-.|..-|+ |++.+-+|+
T Consensus 220 ~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQ 291 (424)
T PF03915_consen 220 TKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQ 291 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 445556666555554433211110 111122222333445555556666666666666664 233343433
No 85
>KOG0971|consensus
Probab=29.94 E-value=2.3e+02 Score=31.14 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhch
Q psy15556 158 IIRELHDEITKLKAMLTSVKVNS 180 (288)
Q Consensus 158 ~i~~l~~ei~~L~~~l~~~~~~~ 180 (288)
.-.+|+.++.+|.+.|+.++...
T Consensus 225 te~eLr~QvrdLtEkLetlR~kR 247 (1243)
T KOG0971|consen 225 TEEELRAQVRDLTEKLETLRLKR 247 (1243)
T ss_pred chHHHHHHHHHHHHHHHHHHhhh
Confidence 34457788888888877765543
No 86
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=29.86 E-value=4.6e+02 Score=27.84 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q psy15556 159 IRELHDEITKLKAMLTSVK 177 (288)
Q Consensus 159 i~~l~~ei~~L~~~l~~~~ 177 (288)
.++|+.|+.+|+.+|....
T Consensus 547 ~~~lE~E~~~lr~elk~ke 565 (697)
T PF09726_consen 547 RRQLESELKKLRRELKQKE 565 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566667777777665443
No 87
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=29.78 E-value=4e+02 Score=24.44 Aligned_cols=8 Identities=38% Similarity=0.542 Sum_probs=4.1
Q ss_pred cceEEEEe
Q psy15556 265 TGVTLYDS 272 (288)
Q Consensus 265 s~~~~y~~ 272 (288)
+|.+||+.
T Consensus 227 CgRILy~~ 234 (239)
T COG1579 227 CGRILYYD 234 (239)
T ss_pred cchHHHhh
Confidence 45555554
No 88
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=29.54 E-value=1.1e+02 Score=25.99 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=19.0
Q ss_pred CccHHHHHHHHHHHHHHHHHHhhhhh
Q psy15556 153 DPNTRIIRELHDEITKLKAMLTSVKV 178 (288)
Q Consensus 153 ~~~~~~i~~l~~ei~~L~~~l~~~~~ 178 (288)
.......++++.|+.+++.|+.....
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~ 61 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISA 61 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-T
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCc
Confidence 34556678899999999999876644
No 89
>KOG4360|consensus
Probab=29.51 E-value=2.8e+02 Score=28.38 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=10.5
Q ss_pred chhccccchhhHHHHHH
Q psy15556 65 EGAHINKSLVTLGSVIS 81 (288)
Q Consensus 65 E~~~IN~SL~~L~~vI~ 81 (288)
=|++|.+||..=.++|.
T Consensus 80 laAkiGqsllk~nk~Lq 96 (596)
T KOG4360|consen 80 LAAKIGQSLLKANKALQ 96 (596)
T ss_pred HHHHHHHHHHhhhhhhh
Confidence 36677777765555543
No 90
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=29.00 E-value=2.8e+02 Score=26.41 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q psy15556 156 TRIIRELHDEITKLKAMLTSVKV 178 (288)
Q Consensus 156 ~~~i~~l~~ei~~L~~~l~~~~~ 178 (288)
...|+.|+.|+.+|+.+|...+.
T Consensus 228 ~shI~~Lr~EV~RLR~qL~~sq~ 250 (310)
T PF09755_consen 228 SSHIRSLRQEVSRLRQQLAASQQ 250 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588899999999999876544
No 91
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=28.87 E-value=60 Score=25.64 Aligned_cols=78 Identities=18% Similarity=0.284 Sum_probs=54.3
Q ss_pred cccCCCcchhhhhcccCCCCcceEEEeecCCCCCChHhHHHHHHHHHHhccccccccccCCccHHHHHHHHHHHHHHHHH
Q psy15556 93 FIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKAM 172 (288)
Q Consensus 93 ~iPyRdSkLT~lL~d~LgGn~kt~~I~~isp~~~~~~ETlsTL~fa~rak~i~~~~~~n~~~~~~~i~~l~~ei~~L~~~ 172 (288)
+.|..+..-.......||-..-+-|+-.+.|.. -.++..||-|-+.++.. -+...-...|..|+.++..++.+
T Consensus 21 yFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~--R~~a~~Sl~yEA~~R~~-----dPv~Gc~G~i~~L~~ql~~~~~e 93 (101)
T PF03195_consen 21 YFPADQPQRFANVHKVFGVSNISKMLQELPPEQ--REDAMRSLVYEANARAR-----DPVYGCVGIISQLQQQLQQLQAE 93 (101)
T ss_pred CCChhHHHHHHHHHHHHchhHHHHHHHhCCccc--hhhHHHHHHHHHHhhcc-----CCCcchHHHHHHHHHHHHHHHHH
Confidence 344455455555666666666666677776654 78999999999888753 11123467899999999999998
Q ss_pred Hhhhh
Q psy15556 173 LTSVK 177 (288)
Q Consensus 173 l~~~~ 177 (288)
|...+
T Consensus 94 l~~~~ 98 (101)
T PF03195_consen 94 LALVR 98 (101)
T ss_pred HHHHH
Confidence 87554
No 92
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=28.76 E-value=2.8e+02 Score=27.39 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy15556 158 IIRELHDEITKLKAMLTSVK 177 (288)
Q Consensus 158 ~i~~l~~ei~~L~~~l~~~~ 177 (288)
.+.+|++++..++.++..+.
T Consensus 335 ~~~~l~~~~~~~~~~l~~l~ 354 (451)
T PF03961_consen 335 KLEELEEELEELKEELEKLK 354 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555566666665555443
No 93
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.74 E-value=4.8e+02 Score=24.28 Aligned_cols=63 Identities=21% Similarity=0.243 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy15556 156 TRIIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQEKVLTEEWAEK 221 (288)
Q Consensus 156 ~~~i~~l~~ei~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~e~ 221 (288)
...+.++..+...++.++..+.... ..........+.+..+..+.+...+..+.++.+...++
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi---~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQI---EEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666665543322 12223333344445555566666666666665554443
No 94
>KOG0995|consensus
Probab=28.11 E-value=5.6e+02 Score=26.54 Aligned_cols=28 Identities=29% Similarity=0.397 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15556 208 QEQEKVLTEEWAEKWRETQKILQEQQAL 235 (288)
Q Consensus 208 ~~~~~~l~~~~~e~~~e~~~~~~e~~~l 235 (288)
+..++.+..+.+++-.|.+.+..+..+|
T Consensus 293 ~~~l~~l~~Eie~kEeE~e~lq~~~d~L 320 (581)
T KOG0995|consen 293 EKKLEMLKSEIEEKEEEIEKLQKENDEL 320 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544444444
No 95
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=27.43 E-value=6.1e+02 Score=25.78 Aligned_cols=9 Identities=56% Similarity=0.767 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy15556 165 EITKLKAML 173 (288)
Q Consensus 165 ei~~L~~~l 173 (288)
|+...+.++
T Consensus 59 E~~~~R~El 67 (514)
T TIGR03319 59 EVHKLRAEL 67 (514)
T ss_pred HHHHHHHHH
Confidence 333333333
No 96
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=27.20 E-value=4.1e+02 Score=25.29 Aligned_cols=12 Identities=33% Similarity=0.437 Sum_probs=8.1
Q ss_pred cchhccccchhh
Q psy15556 64 KEGAHINKSLVT 75 (288)
Q Consensus 64 ~E~~~IN~SL~~ 75 (288)
.=|+.|++||..
T Consensus 79 elaA~iGqsLl~ 90 (306)
T PF04849_consen 79 ELAARIGQSLLE 90 (306)
T ss_pred HHHHHHhHHHHH
Confidence 337788777764
No 97
>PRK04325 hypothetical protein; Provisional
Probab=27.10 E-value=2.3e+02 Score=20.92 Aligned_cols=7 Identities=43% Similarity=0.553 Sum_probs=4.5
Q ss_pred eCCCCCc
Q psy15556 248 LDSDRPH 254 (288)
Q Consensus 248 ~~~~~p~ 254 (288)
.+...||
T Consensus 67 ~~e~PPH 73 (74)
T PRK04325 67 RDEIPPH 73 (74)
T ss_pred CcCCCCC
Confidence 4566777
No 98
>COG1422 Predicted membrane protein [Function unknown]
Probab=26.96 E-value=2.7e+02 Score=24.86 Aligned_cols=19 Identities=11% Similarity=0.308 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy15556 156 TRIIRELHDEITKLKAMLT 174 (288)
Q Consensus 156 ~~~i~~l~~ei~~L~~~l~ 174 (288)
-..+++++++.+.++++.+
T Consensus 71 ~ekm~~~qk~m~efq~e~~ 89 (201)
T COG1422 71 QEKMKELQKMMKEFQKEFR 89 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445556666665555544
No 99
>PRK00295 hypothetical protein; Provisional
Probab=26.29 E-value=2.1e+02 Score=20.77 Aligned_cols=6 Identities=33% Similarity=0.877 Sum_probs=3.5
Q ss_pred CCCCCc
Q psy15556 249 DSDRPH 254 (288)
Q Consensus 249 ~~~~p~ 254 (288)
+...||
T Consensus 62 e~~PPH 67 (68)
T PRK00295 62 EAPPPH 67 (68)
T ss_pred CCCcCC
Confidence 445666
No 100
>PLN02678 seryl-tRNA synthetase
Probab=26.10 E-value=6.7e+02 Score=25.07 Aligned_cols=23 Identities=9% Similarity=0.127 Sum_probs=10.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHH
Q psy15556 196 NQPQMLAALQAKQEQEKVLTEEW 218 (288)
Q Consensus 196 ~~~~~~~~l~~~~~~~~~l~~~~ 218 (288)
+..++.++.++..+++..+..+.
T Consensus 72 ~~~~l~~~~~~Lk~ei~~le~~~ 94 (448)
T PLN02678 72 DATELIAETKELKKEITEKEAEV 94 (448)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555545554444433
No 101
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=26.00 E-value=5e+02 Score=23.54 Aligned_cols=75 Identities=13% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15556 156 TRIIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQEKVLTEEWAEKWRETQKILQEQQAL 235 (288)
Q Consensus 156 ~~~i~~l~~ei~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~e~~~e~~~~~~e~~~l 235 (288)
...|.+|+.|++.|.++ +......+.+...+...+...+.+.+.......+.......+...+..+..++
T Consensus 31 e~~L~e~~kE~~~L~~E----------r~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQE----------RMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ccc-cc
Q psy15556 236 GLR-MG 240 (288)
Q Consensus 236 ~~~-~~ 240 (288)
... +|
T Consensus 101 R~e~lg 106 (230)
T PF10146_consen 101 RKEYLG 106 (230)
T ss_pred HHHHcC
No 102
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=25.96 E-value=3.8e+02 Score=22.15 Aligned_cols=36 Identities=22% Similarity=0.403 Sum_probs=25.3
Q ss_pred ccccccccCCccHHHHHHHHHHHHHHHHHHhhhhhc
Q psy15556 144 IINKPTVNEDPNTRIIRELHDEITKLKAMLTSVKVN 179 (288)
Q Consensus 144 i~~~~~~n~~~~~~~i~~l~~ei~~L~~~l~~~~~~ 179 (288)
|..+.++-+.....+.++|.+.+.++..++.++...
T Consensus 7 V~VK~ivTe~~K~~l~~~l~~~i~~~d~el~QLefq 42 (131)
T PF11068_consen 7 VTVKAIVTEKWKEELLQELQEQIQQLDQELQQLEFQ 42 (131)
T ss_dssp EEEEEE--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666788899999999999888877653
No 103
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=25.76 E-value=4.6e+02 Score=23.06 Aligned_cols=20 Identities=20% Similarity=0.399 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy15556 156 TRIIRELHDEITKLKAMLTS 175 (288)
Q Consensus 156 ~~~i~~l~~ei~~L~~~l~~ 175 (288)
...+.++..|..+|.+.|..
T Consensus 47 ~k~m~ei~~eN~~L~epL~~ 66 (201)
T PF13851_consen 47 EKLMAEISQENKRLSEPLKK 66 (201)
T ss_pred HHHHHHHHHHHHHHhHHHHH
Confidence 33444444444444444433
No 104
>PRK02119 hypothetical protein; Provisional
Probab=25.23 E-value=2.8e+02 Score=20.41 Aligned_cols=14 Identities=21% Similarity=0.482 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHh
Q psy15556 161 ELHDEITKLKAMLT 174 (288)
Q Consensus 161 ~l~~ei~~L~~~l~ 174 (288)
.+.+.|..|+..++
T Consensus 6 ~~e~Ri~~LE~rla 19 (73)
T PRK02119 6 NLENRIAELEMKIA 19 (73)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555554443
No 105
>PRK09039 hypothetical protein; Validated
Probab=24.86 E-value=4.4e+02 Score=25.19 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy15556 159 IRELHDEITKLKAMLTS 175 (288)
Q Consensus 159 i~~l~~ei~~L~~~l~~ 175 (288)
+..|+.+|+.|+.++..
T Consensus 139 V~~L~~qI~aLr~Qla~ 155 (343)
T PRK09039 139 VELLNQQIAALRRQLAA 155 (343)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444555555554443
No 106
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=24.82 E-value=4.8e+02 Score=22.93 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhchH
Q psy15556 158 IIRELHDEITKLKAMLTSVKVNSV 181 (288)
Q Consensus 158 ~i~~l~~ei~~L~~~l~~~~~~~~ 181 (288)
-|.+|+.++..++..+..+...+.
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk 36 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENK 36 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777777776665543
No 107
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=24.42 E-value=5.2e+02 Score=23.20 Aligned_cols=7 Identities=43% Similarity=0.401 Sum_probs=2.9
Q ss_pred HHHHHHH
Q psy15556 131 TLSTLRY 137 (288)
Q Consensus 131 TlsTL~f 137 (288)
.+..++.
T Consensus 21 ~L~~~~~ 27 (302)
T PF10186_consen 21 RLLELRS 27 (302)
T ss_pred HHHHHHH
Confidence 3444443
No 108
>KOG2185|consensus
Probab=24.21 E-value=4.4e+02 Score=26.26 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=26.7
Q ss_pred ceEEEeecCCCCCChHhHHHHHHHHHHhcccccc
Q psy15556 114 KTIMIAAISPADVNYSETLSTLRYANRAKNIINK 147 (288)
Q Consensus 114 kt~~I~~isp~~~~~~ETlsTL~fa~rak~i~~~ 147 (288)
-+-+.+-|-|....++|.+.+.+-+.+-+.-+++
T Consensus 323 V~pI~a~vlp~grSLDecme~kqk~~r~r~gkrk 356 (486)
T KOG2185|consen 323 VNPILAKVLPAGRSLDECMEEKQKKKRSRGGKRK 356 (486)
T ss_pred ccchhhhhccCCCCHHHHHHHHHHhhcccccccc
Confidence 3446688999999999999999988885555543
No 109
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=23.90 E-value=1.2e+02 Score=17.61 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy15556 159 IRELHDEITKLKAMLTSV 176 (288)
Q Consensus 159 i~~l~~ei~~L~~~l~~~ 176 (288)
+.+++..|..|+.+|...
T Consensus 3 ~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567788888888887654
No 110
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=23.87 E-value=7.7e+02 Score=25.17 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhc
Q psy15556 157 RIIRELHDEITKLKAMLTSVKVN 179 (288)
Q Consensus 157 ~~i~~l~~ei~~L~~~l~~~~~~ 179 (288)
..+.+|+.||+.-++++..++.+
T Consensus 330 g~l~kl~~eie~kEeei~~L~~~ 352 (622)
T COG5185 330 GKLEKLKSEIELKEEEIKALQSN 352 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Confidence 34667777776666666655544
No 111
>PRK00106 hypothetical protein; Provisional
Probab=23.70 E-value=8e+02 Score=25.22 Aligned_cols=9 Identities=22% Similarity=0.346 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy15556 165 EITKLKAML 173 (288)
Q Consensus 165 ei~~L~~~l 173 (288)
|+.+.+.++
T Consensus 80 Ei~~~R~El 88 (535)
T PRK00106 80 EARKYREEI 88 (535)
T ss_pred HHHHHHHHH
Confidence 333333333
No 112
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=23.51 E-value=6.9e+02 Score=24.29 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy15556 202 AALQAKQEQEKVLTEEWAEKW 222 (288)
Q Consensus 202 ~~l~~~~~~~~~l~~~~~e~~ 222 (288)
++..+++++-+.+.++..|.+
T Consensus 155 ~e~~Ekeeesq~LnrELaE~l 175 (401)
T PF06785_consen 155 QECGEKEEESQTLNRELAEAL 175 (401)
T ss_pred HHHhHhHHHHHHHHHHHHHHH
Confidence 333344444444444444443
No 113
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=23.25 E-value=6.6e+02 Score=24.35 Aligned_cols=7 Identities=43% Similarity=0.762 Sum_probs=2.9
Q ss_pred HHHHHhh
Q psy15556 79 VISSLAE 85 (288)
Q Consensus 79 vI~~L~~ 85 (288)
|+..|++
T Consensus 105 VLd~Lad 111 (359)
T PF10498_consen 105 VLDQLAD 111 (359)
T ss_pred HHHHHHH
Confidence 3444443
No 114
>KOG0163|consensus
Probab=22.52 E-value=8.4e+02 Score=26.60 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=9.8
Q ss_pred eeCCCCCceeecCCC
Q psy15556 247 VLDSDRPHLVRIDDD 261 (288)
Q Consensus 247 ~~~~~~p~LvnlneD 261 (288)
.+....|.++++..|
T Consensus 1023 ~v~d~~~~~~~~v~~ 1037 (1259)
T KOG0163|consen 1023 QVEDSPPVIRALVND 1037 (1259)
T ss_pred ccccccHHHHhhccc
Confidence 344567788887655
No 115
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=22.46 E-value=4.5e+02 Score=21.74 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15556 201 LAALQAKQEQEKVLTEEWAEKWRETQKILQEQQA 234 (288)
Q Consensus 201 ~~~l~~~~~~~~~l~~~~~e~~~e~~~~~~e~~~ 234 (288)
.+++.+.+++.++..++.+++.++.+..+...+.
T Consensus 103 ~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 136 (144)
T PF11221_consen 103 LKRIKELEEENEEAEEELQEAVKEAEELLKQVQE 136 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777777777665543
No 116
>PRK12704 phosphodiesterase; Provisional
Probab=22.35 E-value=8.4e+02 Score=24.84 Aligned_cols=79 Identities=23% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhh-hhchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15556 157 RIIRELHDEITKLKAMLTSV-KVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQEKVLTEEWAEKWRETQKILQEQQAL 235 (288)
Q Consensus 157 ~~i~~l~~ei~~L~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~e~~~e~~~~~~e~~~l 235 (288)
....+.++|+...+.++... ........+.-....+.++..++..+.|...++.+....+...++.++.++...+...+
T Consensus 57 e~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~ 136 (520)
T PRK12704 57 EALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEEL 136 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 117
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=21.99 E-value=5.5e+02 Score=22.57 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q psy15556 159 IRELHDEITKLKAMLTSVK 177 (288)
Q Consensus 159 i~~l~~ei~~L~~~l~~~~ 177 (288)
+.+++.+++.++-+...++
T Consensus 21 l~elq~~l~~l~~ENk~Lk 39 (194)
T PF15619_consen 21 LAELQRKLQELRKENKTLK 39 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555444433
No 118
>PRK11637 AmiB activator; Provisional
Probab=21.91 E-value=7.5e+02 Score=24.11 Aligned_cols=15 Identities=7% Similarity=0.076 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy15556 159 IRELHDEITKLKAML 173 (288)
Q Consensus 159 i~~l~~ei~~L~~~l 173 (288)
+.++..++..++.++
T Consensus 56 i~~~~~~i~~~~~~~ 70 (428)
T PRK11637 56 IAAKEKSVRQQQQQR 70 (428)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444333333
No 119
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=21.70 E-value=2.1e+02 Score=22.14 Aligned_cols=67 Identities=21% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15556 156 TRIIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQEKVLTEEWAEKW 222 (288)
Q Consensus 156 ~~~i~~l~~ei~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~e~~ 222 (288)
....+.+..+++.|+.+..............-........+...+.+++.+.+.+..++..++...+
T Consensus 35 d~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 35 DQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 120
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=21.60 E-value=3.4e+02 Score=24.33 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=21.1
Q ss_pred chHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q psy15556 197 QPQMLAALQAKQEQEKVLTE---EWAEKWRETQKI 228 (288)
Q Consensus 197 ~~~~~~~l~~~~~~~~~l~~---~~~e~~~e~~~~ 228 (288)
...+.+.|.++++++-.|.. .|++++-+.-.+
T Consensus 59 ~~~L~~~LrEkEErILaLEad~~kWEqkYLEEs~m 93 (205)
T PF12240_consen 59 ASNLKELLREKEERILALEADMTKWEQKYLEESAM 93 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888887666553 677776554443
No 121
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=21.59 E-value=3.4e+02 Score=28.61 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchHHHHHHH--HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15556 157 RIIRELHDEITKLKAMLTSVKVNSVARQQLL--SKAQQTQGNQPQMLAALQAKQEQEKVLTEEWAEKWRETQK 227 (288)
Q Consensus 157 ~~i~~l~~ei~~L~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~e~~~e~~~ 227 (288)
..+..|++|++.|+..+..+........... ........+..++..++...+.....|.+-|..+-.+..+
T Consensus 566 ~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~ 638 (722)
T PF05557_consen 566 STLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQEFRE 638 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888888865543322111111 1111222234556677777788888888888877665554
No 122
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=21.53 E-value=2.7e+02 Score=27.36 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy15556 199 QMLAALQAKQEQEKVLTEE 217 (288)
Q Consensus 199 ~~~~~l~~~~~~~~~l~~~ 217 (288)
.+.++..+..+++.++..+
T Consensus 73 ~l~~~~~~l~~~~~~~~~~ 91 (418)
T TIGR00414 73 EIKKELKELKEELTELSAA 91 (418)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 123
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=21.11 E-value=7.7e+02 Score=25.44 Aligned_cols=85 Identities=20% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15556 157 RIIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQG-NQPQMLAALQAKQEQEKVLTEEWAEKWRETQKILQEQQAL 235 (288)
Q Consensus 157 ~~i~~l~~ei~~L~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~l~~~~~e~~~e~~~~~~e~~~l 235 (288)
..|.+|..|+..+...+.............+........ ..-+....|.+.+..+..+..+-++-..+.+++++..+.|
T Consensus 371 ~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~L 450 (546)
T PF07888_consen 371 DEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERL 450 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cccccc
Q psy15556 236 GLRMGK 241 (288)
Q Consensus 236 ~~~~~~ 241 (288)
..+++.
T Consensus 451 e~r~~~ 456 (546)
T PF07888_consen 451 EQRLDK 456 (546)
T ss_pred HHHHHH
No 124
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=20.77 E-value=3.2e+02 Score=19.40 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q psy15556 157 RIIRELHDEITKLKAMLTSV 176 (288)
Q Consensus 157 ~~i~~l~~ei~~L~~~l~~~ 176 (288)
..+.+|..++..++.++...
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~ 23 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERL 23 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666544
No 125
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=20.73 E-value=4.7e+02 Score=21.35 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15556 198 PQMLAALQAKQEQEKVLTEEWAEKWRETQKI 228 (288)
Q Consensus 198 ~~~~~~l~~~~~~~~~l~~~~~e~~~e~~~~ 228 (288)
.....++.+.-.....+..+|.+++.+...+
T Consensus 58 ~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 58 EELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666677777777777655544
No 126
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=20.67 E-value=2.9e+02 Score=27.23 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q psy15556 156 TRIIRELHDEITKLKAMLTSVKV 178 (288)
Q Consensus 156 ~~~i~~l~~ei~~L~~~l~~~~~ 178 (288)
....+++..+++.|+.+......
T Consensus 34 d~~~r~l~~~~~~lr~~rn~~sk 56 (425)
T PRK05431 34 DEERRELQTELEELQAERNALSK 56 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777788888877765543
No 127
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=20.63 E-value=8.2e+02 Score=24.12 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchHHHH-HHHHHHHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15556 157 RIIRELHDEITKLKAMLTSVKVNSVARQ-QLLSKAQQT-QGNQPQMLAALQAKQEQEKVLTEEWAEKWRETQKILQEQQ 233 (288)
Q Consensus 157 ~~i~~l~~ei~~L~~~l~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~l~~~~~e~~~e~~~~~~e~~ 233 (288)
..+..++..|..++++|...+......- +.+.-.... ........+.++.+++.-.......+.|++...+.++|.+
T Consensus 4 ~~~~~l~~Ki~~~~eqi~~e~~~rd~nv~eyLkl~~~aDk~Q~~rIkq~FekkNqksa~~i~~lqkkL~~y~~~l~ele 82 (395)
T PF10267_consen 4 AAIDHLQQKILKLKEQIKVEQTARDENVAEYLKLASNADKQQAARIKQVFEKKNQKSAQTIAQLQKKLEQYHKRLKELE 82 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888888865543322111 111111111 1112233344445555555555666677777776666654
No 128
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=20.59 E-value=9.2e+02 Score=24.65 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q psy15556 204 LQAKQEQEKVLT 215 (288)
Q Consensus 204 l~~~~~~~~~l~ 215 (288)
+...+++++.|+
T Consensus 339 ie~kEeei~~L~ 350 (622)
T COG5185 339 IELKEEEIKALQ 350 (622)
T ss_pred HHHHHHHHHHHH
Confidence 333344444333
No 129
>PHA02562 46 endonuclease subunit; Provisional
Probab=20.59 E-value=6.3e+02 Score=25.21 Aligned_cols=10 Identities=30% Similarity=0.262 Sum_probs=4.7
Q ss_pred hhhhhcccCC
Q psy15556 101 LTWLLKDSLG 110 (288)
Q Consensus 101 LT~lL~d~Lg 110 (288)
-..+|.+.+|
T Consensus 152 r~~il~~l~~ 161 (562)
T PHA02562 152 RRKLVEDLLD 161 (562)
T ss_pred HHHHHHHHhC
Confidence 3445554444
No 130
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=20.54 E-value=8.2e+02 Score=24.03 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHhhh
Q psy15556 161 ELHDEITKLKAMLTSV 176 (288)
Q Consensus 161 ~l~~ei~~L~~~l~~~ 176 (288)
.+.++-.++..+++.+
T Consensus 34 ~ld~~~r~~~~~~~~l 49 (418)
T TIGR00414 34 ALDDERKKLLSEIEEL 49 (418)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 131
>PF07208 DUF1414: Protein of unknown function (DUF1414); InterPro: IPR009857 This family consists of several hypothetical bacterial proteins of around 70 residues in length. Members of this family are often referred to as YejL. The function of this family is unknown.; PDB: 2JPQ_A 2JUZ_B 2JUW_B 2QTI_A 2OTA_A 2JR2_A 2JRX_A.
Probab=20.23 E-value=72 Score=21.53 Aligned_cols=16 Identities=25% Similarity=0.605 Sum_probs=14.0
Q ss_pred ccchhhHHHHHHHHhh
Q psy15556 70 NKSLVTLGSVISSLAE 85 (288)
Q Consensus 70 N~SL~~L~~vI~~L~~ 85 (288)
..||+.||+++..+.+
T Consensus 6 DLsLMvLGN~vTniln 21 (44)
T PF07208_consen 6 DLSLMVLGNMVTNILN 21 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh
Confidence 4699999999998876
Done!