RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15556
(288 letters)
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 225 bits (576), Expect = 3e-72
Identities = 67/105 (63%), Positives = 82/105 (78%), Gaps = 8/105 (7%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLG 110
G RLKEGA+INKSL TLG VIS+LAE+ + KK+ FIPYRDSVLTWLL+++LG
Sbjct: 261 KGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLG 320
Query: 111 GNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPN 155
GNS+T M+AA+SPAD+NY ETLSTLRYA+RAK I N +VN +
Sbjct: 321 GNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNHHHH 365
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 222 bits (568), Expect = 6e-71
Identities = 65/104 (62%), Positives = 77/104 (74%), Gaps = 3/104 (2%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
G+RLKE IN SL LG+VIS+L + KST IPYRDS LT LL+DSLGGN+KT+M+
Sbjct: 271 QGERLKEATKINLSLSALGNVISALVD---GKSTHIPYRDSKLTRLLQDSLGGNAKTVMV 327
Query: 119 AAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIREL 162
A + PA N ETL+TLRYANRAKNI NKP VNEDP ++RE
Sbjct: 328 ANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLREF 371
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 219 bits (561), Expect = 8e-70
Identities = 45/115 (39%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
G RLKE IN SL LG V+ +L + +PYRDS LT LL+DSLGG++ +I+I
Sbjct: 266 KGLRLKESGAINTSLFVLGKVVDALNQ----GLPRVPYRDSKLTRLLQDSLGGSAHSILI 321
Query: 119 AAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKAML 173
A I+P Y +T+S L +A R+K +IN+P NE + + +L
Sbjct: 322 ANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALGPVKLSQKELLGPP 376
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 217 bits (555), Expect = 3e-69
Identities = 51/113 (45%), Positives = 73/113 (64%), Gaps = 6/113 (5%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
+G L+E INKSL LG VI++L + KS+ +PYRDS LT +L++SLGGNS+T +I
Sbjct: 248 SGQTLEEAKKINKSLSALGMVINALTD---GKSSHVPYRDSKLTRILQESLGGNSRTTLI 304
Query: 119 AAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKA 171
SP+ N +ETLSTLR+ RAK+I NK VN + + +++ + K K
Sbjct: 305 INCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAELKQ---MLAKAKT 354
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 212 bits (542), Expect = 2e-67
Identities = 65/101 (64%), Positives = 72/101 (71%), Gaps = 4/101 (3%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
TG+ L EGA IN SL LG VIS L E +T IPYRDS LT LL+DSLGGNSKT+M
Sbjct: 254 TGETLVEGAKINLSLSALGLVISKLVE----GATHIPYRDSKLTRLLQDSLGGNSKTLMC 309
Query: 119 AAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRII 159
A ISPA NY ET+STLRYA+RAK I NKP +NEDP I
Sbjct: 310 ANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDAQI 350
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 214 bits (548), Expect = 3e-67
Identities = 63/130 (48%), Positives = 79/130 (60%), Gaps = 21/130 (16%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELST------------------KKSTFIPYRDSV 100
TG RL+EG++INKSL TLG VI++LA+ + ++ +PYRDSV
Sbjct: 312 TGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSV 371
Query: 101 LTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIR 160
LTWLLKDSLGGNSKT MIA ISP D Y ETLSTLRYA++AK I + VN+
Sbjct: 372 LTWLLKDSLGGNSKTAMIACISPTD--YDETLSTLRYADQAKRIRTRAVVNQVDGVSAA- 428
Query: 161 ELHDEITKLK 170
E +I +
Sbjct: 429 ERDAQIPSIV 438
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 210 bits (538), Expect = 1e-66
Identities = 51/115 (44%), Positives = 66/115 (57%), Gaps = 4/115 (3%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
G L E +INKSL LG+VIS+LA+ T IPYRDS LT +L++SLGGN++T ++
Sbjct: 251 EGTVLDEAKNINKSLSALGNVISALAD---GNKTHIPYRDSKLTRILQESLGGNARTTIV 307
Query: 119 AAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTR-IIRELHDEITKLKAM 172
SPA N SET STL + RAK + N VNE+ R E K +
Sbjct: 308 ICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNARL 362
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 207 bits (528), Expect = 3e-65
Identities = 47/105 (44%), Positives = 66/105 (62%), Gaps = 4/105 (3%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
G RLKEG +IN+SL LG VI L++ + FI YRDS LT +L++SLGGN+KT +I
Sbjct: 247 AGVRLKEGCNINRSLFILGQVIKKLSD--GQVGGFINYRDSKLTRILQNSLGGNAKTRII 304
Query: 119 AAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELH 163
I+P ++ ETL+ L++A+ AK + N P VNE + H
Sbjct: 305 CTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDELEHHHH 347
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 204 bits (522), Expect = 2e-64
Identities = 63/90 (70%), Positives = 74/90 (82%), Gaps = 2/90 (2%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELST--KKSTFIPYRDSVLTWLLKDSLGGNSKTI 116
GDRLKEG++INKSL TLG VIS+LA+ S K+ F+PYRDSVLTWLLKDSLGGNSKT
Sbjct: 263 AGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTA 322
Query: 117 MIAAISPADVNYSETLSTLRYANRAKNIIN 146
M+A +SPA NY ETLSTLRYA+RAK+ +
Sbjct: 323 MVATVSPAADNYDETLSTLRYADRAKHHHH 352
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 202 bits (515), Expect = 3e-63
Identities = 51/94 (54%), Positives = 70/94 (74%), Gaps = 4/94 (4%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
R +E +IN+SL+TLG VI++L E ++ +PYR+S LT +L+DSLGG ++T +I
Sbjct: 269 VDKRAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSII 324
Query: 119 AAISPADVNYSETLSTLRYANRAKNIINKPTVNE 152
A ISPA +N ETLSTL YA+RAKNI+NKP VN+
Sbjct: 325 ATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 199 bits (509), Expect = 2e-62
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
G +EG +IN L+++ V+ S+A T IPYRDSVLT +L+ SL S +
Sbjct: 254 EGVARQEGVNINLGLLSINKVVMSMAA----GHTVIPYRDSVLTTVLQASLTAQSYLTFL 309
Query: 119 AAISPADVNYSETLSTLRYANRAKNIINKPTVN 151
A ISP + SETLSTLR+ AK + +
Sbjct: 310 ACISPHQCDLSETLSTLRFGTSAKAAALEHHHH 342
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 200 bits (511), Expect = 2e-62
Identities = 50/97 (51%), Positives = 69/97 (71%), Gaps = 4/97 (4%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
G R++E +IN+SL+TLG VI++L + ++ +PYR+S LT LL++SLGG +KT +I
Sbjct: 280 KGIRVRETVNINQSLLTLGRVITALVD----RAPHVPYRESKLTRLLQESLGGRTKTSII 335
Query: 119 AAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPN 155
A ISP + ETLSTL YA+RAKNI NKP VN+
Sbjct: 336 ATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKLT 372
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 195 bits (498), Expect = 2e-60
Identities = 48/115 (41%), Positives = 69/115 (60%), Gaps = 6/115 (5%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
G++LKE INKSL LG VIS+L+ + IPYR+ LT L+ DSLGGN+KT+M
Sbjct: 246 AGNQLKEAQSINKSLSALGDVISALSS----GNQHIPYRNHKLTMLMSDSLGGNAKTLMF 301
Query: 119 AAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKAML 173
ISPA+ N ET ++L YA+R ++I+N P+ N + + L ++ K
Sbjct: 302 VNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSS--KEVARLKKLVSYWKEQA 354
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 194 bits (495), Expect = 3e-60
Identities = 52/86 (60%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
G R EG +IN+SL+ LG+VI++LA+ S +K+ IPYR+S LT LLKDSLGGN +TIMI
Sbjct: 271 KGTRFVEGTNINRSLLALGNVINALAD-SKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMI 329
Query: 119 AAISPADVNYSETLSTLRYANRAKNI 144
AA+SP+ V Y +T +TL+YANRAK+I
Sbjct: 330 AAVSPSSVFYDDTYNTLKYANRAKDI 355
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 185 bits (471), Expect = 7e-57
Identities = 47/84 (55%), Positives = 66/84 (78%), Gaps = 1/84 (1%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
TG+RLKE IN SL+ LG+VIS+L + ++ + IPYRDS +T +LKDSLGGN+KT+MI
Sbjct: 262 TGERLKESIQINSSLLALGNVISALGD-PQRRGSHIPYRDSKITRILKDSLGGNAKTVMI 320
Query: 119 AAISPADVNYSETLSTLRYANRAK 142
A +SP+ ++ ETL+TL YA+RA+
Sbjct: 321 ACVSPSSSDFDETLNTLNYASRAQ 344
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 181 bits (462), Expect = 1e-55
Identities = 45/86 (52%), Positives = 58/86 (67%), Gaps = 4/86 (4%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
G L E +INKSL LG+VIS+LAE ST++PYRDS +T +L+DSLGGN +T ++
Sbjct: 244 EGAVLDEAKNINKSLSALGNVISALAE----GSTYVPYRDSKMTRILQDSLGGNCRTTIV 299
Query: 119 AAISPADVNYSETLSTLRYANRAKNI 144
SP+ N SET STL + RAK I
Sbjct: 300 ICCSPSSYNESETKSTLLFGQRAKTI 325
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 180 bits (460), Expect = 5e-55
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
G LKE +INKSL L I +L + +K IP+R LT LKDSLGGN +++
Sbjct: 276 EGQVLKEATYINKSLSFLEQAIIALGD---QKRDHIPFRQCKLTHALKDSLGGNCNMVLV 332
Query: 119 AAISPADVNYSETLSTLRYANRAKNI 144
I ETLS+LR+A+R K +
Sbjct: 333 TNIYGEAAQLEETLSSLRFASRMKLV 358
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 180 bits (458), Expect = 9e-55
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 59 TGDRLK-EGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIM 117
+ + +GA+IN+SL+ L I ++ IP+RDS LT +L+D G SK+IM
Sbjct: 249 QNKQTQTDGANINRSLLALKECIRAMDS----DKNHIPFRDSELTKVLRDIFVGKSKSIM 304
Query: 118 IAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKA 171
IA ISP +TL+TLRY++R KN N + ++
Sbjct: 305 IANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGKPIPNPLLGLDSSRTGHHHH 358
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 178 bits (455), Expect = 2e-54
Identities = 39/90 (43%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
TG+RL+E +INKSL LG VI +L +IP+R+S LT+LL+ SL G+SKT+M
Sbjct: 260 TGERLRETQNINKSLSCLGDVIYALNTPD-AGKRYIPFRNSKLTYLLQYSLVGDSKTLMF 318
Query: 119 AAISPADVNYSETLSTLRYANRAKNIINKP 148
I P + SETL++LR+A++ +
Sbjct: 319 VNIPPDPNHISETLNSLRFASKVNSTKIAK 348
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 178 bits (454), Expect = 1e-53
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 6/95 (6%)
Query: 59 TGDRLK-EGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS-LGGNSKTI 116
+ + EGA INKSL+ L I +L + P+R+S LT +L+DS +G NS+T
Sbjct: 319 ADRQTRMEGAEINKSLLALKECIRALGQ----NKAHTPFRESKLTQVLRDSFIGENSRTC 374
Query: 117 MIAAISPADVNYSETLSTLRYANRAKNIINKPTVN 151
MIA ISP + TL+TLRYA+R K + + +
Sbjct: 375 MIAMISPGISSCEYTLNTLRYADRVKELSHHHHHH 409
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 165 bits (420), Expect = 4e-52
Identities = 46/109 (42%), Positives = 66/109 (60%), Gaps = 4/109 (3%)
Query: 70 NKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYS 129
NKSL LG+VIS+LAE T +PYRDS +T +L+DSLGGN +T ++ SP+ N +
Sbjct: 1 NKSLSALGNVISALAE---GTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEA 57
Query: 130 ETLSTLRYANRAKNIINKPTVNEDPNTR-IIRELHDEITKLKAMLTSVK 177
ET STL + RAK I N +VN + ++ E K KA+ + ++
Sbjct: 58 ETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKSVIQ 106
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 172 bits (439), Expect = 5e-52
Identities = 39/90 (43%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
GDRL+E +INKSL LG VI +L + + IP+R+S LT+LL+ SL G+SKT+M
Sbjct: 257 VGDRLRETQNINKSLSCLGDVIHALGQPDST-KRHIPFRNSKLTYLLQYSLTGDSKTLMF 315
Query: 119 AAISPADVNYSETLSTLRYANRAKNIINKP 148
ISP+ + +ETL++LR+A++ +
Sbjct: 316 VNISPSSSHINETLNSLRFASKVNSTRLVS 345
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus
norvegicus} SCOP: c.37.1.9
Length = 100
Score = 164 bits (417), Expect = 7e-52
Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 68 HINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVN 127
+INKSL LG+VIS+LAE T +PYRDS +T +L+DSL GN +T ++ SP+ N
Sbjct: 3 NINKSLSALGNVISALAE---GTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFN 59
Query: 128 YSETLSTLRYANRAKNIINKPTVNEDPNTR-IIRELHDEI 166
+ET STL + RAK I N +VN + ++ E
Sbjct: 60 EAETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEK 99
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 173 bits (440), Expect = 9e-52
Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 6/92 (6%)
Query: 59 TGDRLK-EGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS-LGGNSKTI 116
+ + EGA INKSL+ L I +L + P+R+S LT +L+DS +G NS+T
Sbjct: 299 ADRQTRMEGAEINKSLLALKECIRALGQ----NKAHTPFRESKLTQVLRDSFIGENSRTC 354
Query: 117 MIAAISPADVNYSETLSTLRYANRAKNIINKP 148
MIA ISP + TL+TLRYA+R K +
Sbjct: 355 MIATISPGISSCEYTLNTLRYADRVKELSPHS 386
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 172 bits (437), Expect = 4e-51
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
T R+ E +IN+SL L +VI +L + K IPYR+S LT LL SLGGNSKT+M
Sbjct: 301 TSTRMTETKNINRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMF 356
Query: 119 AAISPADVNYSETLSTLRYANRAKNI-INKPTVNEDPNTRIIRE 161
+SP + E++ +LR+A + + K N N +
Sbjct: 357 INVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLNNSVANS 400
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 168 bits (428), Expect = 8e-50
Identities = 39/90 (43%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
GDRL+E +INKSL LG VI +L + + IP+R+S LT+LL+ SL G+SKT+M
Sbjct: 313 VGDRLRETQNINKSLSALGDVIHALGQPDST-KRHIPFRNSKLTYLLQYSLTGDSKTLMF 371
Query: 119 AAISPADVNYSETLSTLRYANRAKNIINKP 148
ISP+ + +ETL++LR+A++ +
Sbjct: 372 VNISPSSSHINETLNSLRFASKVNSTRLVS 401
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 162 bits (412), Expect = 4e-48
Identities = 40/86 (46%), Positives = 60/86 (69%), Gaps = 4/86 (4%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
G RL+E HINKSL LG VI++L + +P+R+S LT+LL+DSL G+SKT+M+
Sbjct: 247 EGSRLREAQHINKSLSALGDVIAALRS----RQGHVPFRNSKLTYLLQDSLSGDSKTLMV 302
Query: 119 AAISPADVNYSETLSTLRYANRAKNI 144
+SP + N SETL +L++A R +++
Sbjct: 303 VQVSPVEKNTSETLYSLKFAERVRSV 328
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 158 bits (403), Expect = 2e-46
Identities = 38/86 (44%), Positives = 58/86 (67%), Gaps = 4/86 (4%)
Query: 57 SITGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTI 116
+RL+E IN SL TLG VI +L+ K + +PYR+S LT+LL++SLGG++K +
Sbjct: 293 PGERERLRETQAINSSLSTLGLVIMALSN----KESHVPYRNSKLTYLLQNSLGGSAKML 348
Query: 117 MIAAISPADVNYSETLSTLRYANRAK 142
M ISP + N SE+L++LR+A++
Sbjct: 349 MFVNISPLEENVSESLNSLRFASKVN 374
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation,
structural genomics consort ATP-binding, cytoskeleton,
microtubule, motor protein, NUCL binding; 2.30A {Homo
sapiens} PDB: 3mdb_A*
Length = 124
Score = 38.0 bits (88), Expect = 7e-04
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 230 QEQQALGLRMGKDGTGVVLDSDRPHLVRIDDDLYSTGVTLY 270
+ G G+ + D+ LV ++ D + +Y
Sbjct: 4 HHHHSSGRENLYFQGGIKVGDDKCFLVNLNADPALNELLVY 44
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.001
Identities = 29/219 (13%), Positives = 65/219 (29%), Gaps = 39/219 (17%)
Query: 86 LSTKKSTFI---PYRDS---VLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYAN 139
LS ++ I S L W L + + +NY +S ++
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSK---QEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 140 RAKNIINKPTVNE-DP---NTRIIRELH----DEITKLKAMLTSVKVNS-VARQQLLSKA 190
R +++ + + + D + ++ + + KL+ L ++ V +L
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL--- 159
Query: 191 QQTQGNQPQMLAALQAKQEQEKVLTEE---WAE--KWRETQKILQEQQALGLRMGKDGTG 245
G+ +A + + + W + +L+ Q L ++ + T
Sbjct: 160 ----GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 246 VVLDSDRPHLVRIDDDLYSTGVTLYDSVLPSFALHMYVR 284
S L RI + + Y
Sbjct: 216 RSDHSSNIKL-RIHS--------IQAELRRLLKSKPYEN 245
Score = 34.1 bits (77), Expect = 0.057
Identities = 32/160 (20%), Positives = 52/160 (32%), Gaps = 44/160 (27%)
Query: 45 HLIPQYNQGIFYSITGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTF-IPYRDSVLTW 103
LIP Y FYS G LK E + + F + + D +
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKN------------------IEHPERMTLFRMVFLD--FRF 502
Query: 104 LLKDSLGGNSKTIMIAAISPADVNYSETLSTLR-YANRAKNIINKPTVNEDPNTRIIREL 162
L K + A + TL L+ Y K I N+ R++ +
Sbjct: 503 L-------EQKIRHDSTAWNASGSILNTLQQLKFY----KPYI---CDNDPKYERLVNAI 548
Query: 163 HDEITKLKAMLTSVKVNSVARQQLLSK--------AQQTQ 194
D + K++ L K + R L+++ +Q Q
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.2 bits (88), Expect = 0.001
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 7/34 (20%)
Query: 202 AALQAKQEQEKVLTEEWAEKWRETQKI-LQEQQA 234
A + QE E + KWRE Q+ LQE A
Sbjct: 76 QADRLTQEPESI------RKWREEQRKRLQELDA 103
Score = 31.3 bits (70), Expect = 0.23
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 10/38 (26%)
Query: 204 LQAKQEQEKVLTEEWAEK-------WRETQKILQEQQA 234
LQ KV+ +EW EK W + Q EQ
Sbjct: 98 LQELDAASKVMEQEWREKAKKDLEEWNQRQ---SEQVE 132
Score = 30.1 bits (67), Expect = 0.54
Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 26/92 (28%)
Query: 144 IINKPTVNEDPNTRIIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAA 203
I + ++P + IR+ +E +++ L Q+ M
Sbjct: 74 IAQADRLTQEPES--IRKWREE-----------------QRKRL---QELDAASKVMEQE 111
Query: 204 LQAKQEQEKVLTEEWAEKWRET-QKILQEQQA 234
+ K +++ EEW ++ E +K +
Sbjct: 112 WREKAKKDL---EEWNQRQSEQVEKNKINNRI 140
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural
genomics, PSI-2, protein structure initiative; 2.90A
{Geobacillus stearothermophilus} SCOP: a.281.1.2
Length = 122
Score = 35.5 bits (82), Expect = 0.005
Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 157 RIIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQEKVLTE 216
+ IR + +LK V+ + A + + + + Q L KQ + +
Sbjct: 17 QAIRAS-EPFQQLKRAYEDVRRDETAYR-MFANVRDIQLR-------LHEKQMRGAAILP 67
Query: 217 EWAEKWRETQKILQEQQAL 235
+ E+ ++ + Q+ + L
Sbjct: 68 DEIEQAQKAMALAQQNEKL 86
>2eh0_A KLP, kinesin-like protein KIF1B; FHA domain, KIAA0591, KIAA1448,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 130
Score = 35.2 bits (80), Expect = 0.007
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 245 GVVLDSDRPHLVRIDDDLYSTGVTLY 270
G S PHLV +++D + LY
Sbjct: 1 GSSGSSGTPHLVNLNEDPLMSECLLY 26
>2oee_A UPF0342 protein YHEA; MCSG, structural genomics, PSI-2, protein
structure in midwest center for structural genomics,
unknown function; HET: MSE; 1.96A {Bacillus subtilis}
SCOP: a.281.1.2
Length = 117
Score = 34.4 bits (79), Expect = 0.010
Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 157 RIIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQEKVLTE 216
+R +E T+LK + V + A +++ + Q LQ KQ + +T+
Sbjct: 14 NALRGS-EEFTRLKNLYDEVNADESA-KRMFENFRDVQ-------LRLQQKQMAGEEITQ 64
Query: 217 EWAEKWRETQKILQE 231
E + ++T ++Q+
Sbjct: 65 EEVTQAQKTVALVQQ 79
>2iaz_A Hypothetical protein SP1372; structural genomics, PSI-2, protei
structure initiative; 2.40A {Streptococcus pneumoniae}
SCOP: a.281.1.2
Length = 113
Score = 33.6 bits (77), Expect = 0.016
Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Query: 157 RIIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQEKVLTE 216
R +R L E +KA ++ ++ A ++ + Q +Q + ++
Sbjct: 14 RGLRGL-PEYKAVKAAKDAIAADAEA-SKIFTDYLAFQ-------EEIQKLAQTGQMPDA 64
Query: 217 EWAEKWRETQKILQE 231
+ K K +Q
Sbjct: 65 SFQAKMEGFGKQIQG 79
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.070
Identities = 36/227 (15%), Positives = 68/227 (29%), Gaps = 86/227 (37%)
Query: 35 FWGQ-----YLKGLFHLIPQYNQGIFYSITGDRLKEGAHINKSLVTLGSVISSLAELSTK 89
F GQ Y + L L Y ++ + GD +K A +S L +
Sbjct: 160 FGGQGNTDDYFEELRDL---YQ--TYHVLVGDLIKFSA----------ETLSELIRTTLD 204
Query: 90 KSTFIPYRDSVLTWL-------------------------------------------LK 106
++L WL L+
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 107 DSLGG---NSKTIMIA-AISPAD------VNYSETLSTLRY----ANRAKNIINKPTVNE 152
L G +S+ ++ A AI+ D V+ + ++ L + A P +
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA-----YPNTSL 319
Query: 153 DPNTRIIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQ 199
P+ ++E ML S+ ++ ++Q+ +T + P
Sbjct: 320 PPSILEDSLENNE-GVPSPML-SIS--NLTQEQVQDYVNKTNSHLPA 362
Score = 33.9 bits (77), Expect = 0.078
Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 32/116 (27%)
Query: 124 ADVNYSETL--STLRYANRAKNII-NKP---TVNED-PNTRIIRELHDEI---TKLKAML 173
AD ++ +T S L +I+ N P T++ + IRE + + T + L
Sbjct: 1649 ADNHFKDTYGFSIL-------DIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKL 1701
Query: 174 TSVKVNSVARQQLLSKA--------QQTQGNQPQMLAALQAKQEQEKVLTEEWAEK 221
+ K+ + S TQ QP + EK E+ K
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM-------EKAAFEDLKSK 1750
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress
response-related, signaling P; 2.70A {Escherichia coli}
Length = 138
Score = 31.1 bits (70), Expect = 0.18
Identities = 17/81 (20%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 160 RELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQEKVLTEEWA 219
R +E + ++TS + V + ++K ++ + + MLA ++ + + +LT E
Sbjct: 55 RPPLEERRAMHDIITSDTFDKVKAEAQIAKMEEQR--KANMLAHMETQNKIYNILTPEQK 112
Query: 220 EKWRET-QKILQEQQALGLRM 239
+++ +K L E+ A +M
Sbjct: 113 KQFNANFEKRLTERPAAKGKM 133
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 30.5 bits (68), Expect = 0.43
Identities = 11/74 (14%), Positives = 27/74 (36%)
Query: 161 ELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQEKVLTEEWAE 220
L T++ ++ ++ + Q+ + ++ + LQA E E+ +E
Sbjct: 31 RLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSE 90
Query: 221 KWRETQKILQEQQA 234
+ Q + Q
Sbjct: 91 MIGDLQARITSLQE 104
Score = 27.4 bits (60), Expect = 3.6
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 159 IRELHDEITKLKAMLTSVKVNSVARQQLLS----KAQQTQGNQPQMLAALQAKQEQEKVL 214
I L +E+ LK L V+ Q +L+ + + + L +LQ + EQE
Sbjct: 99 ITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEVNE 158
Query: 215 TEEWAEKWRE 224
+ + +
Sbjct: 159 HKVTKARLTD 168
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway,
envelope stress, transduction; HET: MSE; 1.45A
{Escherichia coli str} PDB: 3qzc_A
Length = 145
Score = 30.0 bits (67), Expect = 0.45
Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 160 RELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQEKVLTEEWA 219
E+ + ++T+ + A + K Q + + + + + ++LT E
Sbjct: 67 PVNVSELETMHRLVTAENFDENAVRAQAEKMANEQ--IARQVEMAKVRNQMYRLLTPEQQ 124
Query: 220 EKWRETQK 227
E +
Sbjct: 125 AVLNEKHQ 132
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin
capping, actin-binding, alternative splicing,
calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Length = 323
Score = 30.3 bits (68), Expect = 0.67
Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 3/85 (3%)
Query: 151 NEDPNTRIIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQ 210
+ + I E D + + A L + R Q+L+ + + Q++
Sbjct: 76 SGHSDAATIAEWKDGLNEAWADLLEL---IDTRTQILAASYELHKFYHDAKEIFGRIQDK 132
Query: 211 EKVLTEEWAEKWRETQKILQEQQAL 235
K L EE + + +
Sbjct: 133 HKKLPEELGRDQNTVETLQRMHTTF 157
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle,
spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Length = 224
Score = 30.0 bits (67), Expect = 0.68
Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 161 ELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQEKVLTEEWAE 220
D++ +L++ + S +++ L L L K+E E + +W+E
Sbjct: 93 SYTDKLHRLESQYAKLLNTSRNQERHLDTLHNFVTRATNELIWLNEKEESE--VAYDWSE 150
Query: 221 KWRETQKILQEQQAL 235
+ + L
Sbjct: 151 RNSSVARKKSYHAEL 165
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37,
MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C
2f66_C
Length = 192
Score = 29.0 bits (64), Expect = 1.3
Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 1/74 (1%)
Query: 159 IRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQEKVLTEEW 218
+L +TK + R Q + + Q +QA E ++L ++
Sbjct: 51 RHQLELYVTKFNPLTDFAGKIHAFRDQFKQLEENFEDLHEQK-DKVQALLENARILESKY 109
Query: 219 AEKWRETQKILQEQ 232
W++ ++
Sbjct: 110 VASWQDYHSEFSKK 123
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical
linker region, 2 tandem 3-helix coiled- coils,
structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1
a.7.1.1 PDB: 1aj3_A
Length = 213
Score = 29.1 bits (65), Expect = 1.4
Identities = 15/98 (15%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Query: 139 NRAKNIINKPTVNEDPNTRIIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQP 198
+ K + + T+ ++ + + + D +LK + + AR Q L ++ + Q
Sbjct: 61 DTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQL-------AAARGQRLEESLEYQQFVA 113
Query: 199 QMLAALQAKQEQEKVL-TEEWAEKWRETQKILQEQQAL 235
+ E+ ++ +E++ + Q +L++ +A
Sbjct: 114 NVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAF 151
>2kvp_A Talin-1; VBS, vinculin, helical bundle, cytoplasm, cytoskeleto
membrane, phosphoprotein, structural protein,
acetylation, membrane; NMR {Mus musculus}
Length = 165
Score = 28.9 bits (64), Expect = 1.5
Identities = 22/152 (14%), Positives = 52/152 (34%), Gaps = 11/152 (7%)
Query: 65 EGAHINKSLVTLGSVISSLAE--LSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAIS 122
+ + ++ I+ L E + + +F+ Y+ +++ K + + + S
Sbjct: 12 AAGVVGGMVDSITQAINQLDEGPMGDPEGSFVDYQTTMVR-TAKAIAVTVQEMVTKSNTS 70
Query: 123 PADVNYSETLSTLRYANRAKNIINKPTVNEDPN--TRIIRELHD------EITKLKAMLT 174
P ++ T Y A E+ I + + + L
Sbjct: 71 PEELGPLANQLTSDYGRLASQAKPAAVAAENEEIGAHIKHRVQELGHGCSALVTKAGALQ 130
Query: 175 SVKVNSVARQQLLSKAQQTQGNQPQMLAALQA 206
+ +++L+ A++ +LAALQA
Sbjct: 131 CSPSDVYTKKELIECARRVSEKVSHVLAALQA 162
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin,
ankyrin-binding domain, actin capping, AC binding,
cytoskeleton, disease mutation; 2.10A {Homo sapiens}
PDB: 3f57_A
Length = 218
Score = 28.8 bits (64), Expect = 1.8
Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 7/86 (8%)
Query: 157 RIIRELHDEITKLKAMLTSV-------KVNSVARQQLLSKAQQTQGNQPQMLAALQAKQE 209
R+I H E + + R QLL+ + L E
Sbjct: 67 RLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDE 126
Query: 210 QEKVLTEEWAEKWRETQKILQEQQAL 235
+ + L E+ + + A
Sbjct: 127 KHRELPEDVGLDASTAESFHRVHTAF 152
>2g1l_A Kinesin-like protein KIF1C; transport, FHA domain, structural
genomics consortium, kines transport protein; 2.60A
{Homo sapiens} SCOP: b.26.1.2
Length = 104
Score = 27.7 bits (61), Expect = 1.8
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 253 PHLVRIDDDLYSTGVTLY 270
PHLV +++D + LY
Sbjct: 4 PHLVNLNEDPLMSECLLY 21
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox
protein, protein disulfide isomerase, thioredoxin fold;
1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB:
1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Length = 241
Score = 28.5 bits (63), Expect = 2.4
Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 19/103 (18%)
Query: 153 DPNTRIIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQEK 212
DP ++ + V++ ++ + ++ A L +K + K
Sbjct: 106 DPFCPYCKQFWQQARPWVDSGK-VQLRTLLVGVIKPESP------ATAAAILASK-DPAK 157
Query: 213 VLTEEWAEKWR-----------ETQKILQEQQALGLRMGKDGT 244
+ A + E K+L + + L +G + T
Sbjct: 158 TWQQYEASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVT 200
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: b.26.1.2
Length = 120
Score = 27.6 bits (61), Expect = 2.8
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 243 GTGVVLDSDRPHLVRIDDD--LYSTGVTLY 270
+G P+LV + D LY
Sbjct: 2 SSGSSGPEKLPYLVELSPDGSDSRDKPKLY 31
>2h8n_A HD4, histone deacetylase 4; alpha helix, polar zipper,
transcription; 2.60A {Homo sapiens} PDB: 2o94_A
Length = 112
Score = 27.1 bits (59), Expect = 2.8
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 184 QQLLSKAQQTQGNQPQMLAALQAKQEQEKVLTEEWAEKWRETQKILQEQQALG 236
QQ L +Q Q Q Q+L + Q Q + L+ + + E K QE A+
Sbjct: 31 QQELLALKQKQQIQRQIL--IAEFQRQHEQLSRQHEAQLHEHIKQQQEMLAMK 81
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825
/ FA 1090), DSBC, structural genomics, unknown funct 2;
2.00A {Neisseria gonorrhoeae}
Length = 147
Score = 27.7 bits (61), Expect = 3.0
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 6/93 (6%)
Query: 153 DPNTRIIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQG-NQPQMLAALQAKQEQE 211
DP+ + L E K+ + + +A + + QP A +
Sbjct: 23 DPDCPFCKRLEHEFEKMTDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKG 82
Query: 212 KVLTEEWAEKWRETQKILQEQQALGLRMGKDGT 244
K + E +LG + G +GT
Sbjct: 83 KFPVGGSICD-----NPVAETTSLGEQFGFNGT 110
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 28.5 bits (64), Expect = 3.1
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
Query: 157 RIIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQEKVLTE 216
E D IT ++A L +++ Q L ++ + L + LTE
Sbjct: 901 LGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLT--ELNYNGVPELTE 958
Query: 217 EWAEKWRETQKILQEQ 232
+ + ++
Sbjct: 959 RKDTFFAQQWTGVKSS 974
>2vj4_A Protein MXIC, MXIC; secretion regulation, transport protein, T3SS,
virulence, TR type three secretion system; HET: MLY;
2.50A {Shigella flexneri} PDB: 2vix_A* 2vj5_A
Length = 294
Score = 28.1 bits (61), Expect = 3.2
Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 2/96 (2%)
Query: 148 PTVNEDPNTRIIRELHDEITK-LKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQA 206
P + RI+ DEI + + ++ N + + + + + + AL+
Sbjct: 7 PRGSHMSQERILDGEEDEINHXIFDLXRTLXDNLPLDRDFIDRLXRYFXDPSDQVLALRE 66
Query: 207 KQEQEKVLTEEWAEKWRETQKILQEQQALGLRMGKD 242
+ LT E E + + G +
Sbjct: 67 LLNEXD-LTAEQVELLTXIINEIISGSEXSVNAGIN 101
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 28.0 bits (62), Expect = 3.9
Identities = 14/82 (17%), Positives = 22/82 (26%), Gaps = 3/82 (3%)
Query: 154 PNTRIIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQEKV 213
I E D L M + R QLL+ + L E+ +
Sbjct: 183 SEAATIAEWKDG---LNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRE 239
Query: 214 LTEEWAEKWRETQKILQEQQAL 235
L E+ + + A
Sbjct: 240 LPEDVGLDASTAESFHRVHTAF 261
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 27.8 bits (60), Expect = 4.8
Identities = 10/83 (12%), Positives = 32/83 (38%)
Query: 160 RELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQEKVLTEEWA 219
+E I++ +N ++L K ++ + + + + ++ T ++
Sbjct: 164 KEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYM 223
Query: 220 EKWRETQKILQEQQALGLRMGKD 242
E + + Q+ + LR ++
Sbjct: 224 ENMEQVFEQCQQFEEKRLRFFRE 246
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of
spectrin, alpha helical linker region, 3- helix
coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP:
a.7.1.1 a.7.1.1
Length = 214
Score = 27.2 bits (60), Expect = 5.1
Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Query: 151 NEDPNTRIIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQ 210
DP ++ + + L ++ +R L++ Q Q A Q
Sbjct: 70 QTDPEYLLLGQR---LEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAILSNQ 126
Query: 211 EKVL-TEEWAEKWRETQKILQEQQAL 235
E L E + + +++ +
Sbjct: 127 EYTLAHLEPPDSLEAAEAGIRKFEDF 152
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 27.6 bits (60), Expect = 5.2
Identities = 13/83 (15%), Positives = 30/83 (36%)
Query: 151 NEDPNTRIIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQ 210
+++ T I + +T+ + + +V + + Q + Q QM+ + ++
Sbjct: 467 SKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQE 526
Query: 211 EKVLTEEWAEKWRETQKILQEQQ 233
E E R QE+
Sbjct: 527 HLKQLTEKMENDRVQLLKEQERT 549
Score = 27.2 bits (59), Expect = 6.6
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 156 TRIIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQEKVLT 215
T +E+ E K ++ S K+ +++ +Q + + + L L K E ++
Sbjct: 483 TEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDR--V 540
Query: 216 EEWAEKWRETQKILQEQQAL 235
+ E+ R LQEQ+ L
Sbjct: 541 QLLKEQERTLALKLQEQEQL 560
>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA
packaging podoviridae, virus assembly, tail tube, trunk
domain; 7.50A {Enterobacteria phage P22}
Length = 725
Score = 27.7 bits (60), Expect = 6.0
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 4/88 (4%)
Query: 152 EDPNTRIIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQ----AK 207
+ + + + D K + K + QQ L +AQQ + Q +
Sbjct: 558 TLLDGKGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQ 617
Query: 208 QEQEKVLTEEWAEKWRETQKILQEQQAL 235
+ E + + ++ Q L
Sbjct: 618 GQAELAKAQNQTLSLQIDAAKVEAQNQL 645
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A
{Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Length = 143
Score = 26.8 bits (59), Expect = 6.3
Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 182 ARQQLLSKAQQTQGNQPQMLAALQAKQEQEKVLTEEWAEKWRETQKILQEQQAL 235
L ++ + +M LQAK ++ + + E + ++ ++Q
Sbjct: 24 VSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLE-KDVMAQRQTF 76
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain
binding, HIP1 coiled-coil domain, endocytosis, clathrin
SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Length = 107
Score = 26.0 bits (56), Expect = 6.4
Identities = 12/59 (20%), Positives = 24/59 (40%)
Query: 152 EDPNTRIIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQ 210
D R +E + + LK L + + Q L + Q++ N A L+ +++
Sbjct: 42 SDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDS 100
>2b0h_A Talin-1; vinculin, helical bundle, VBS, structural protein; NMR
{Mus musculus} SCOP: a.24.9.2
Length = 137
Score = 26.6 bits (58), Expect = 6.6
Identities = 21/124 (16%), Positives = 45/124 (36%), Gaps = 9/124 (7%)
Query: 91 STFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIIN--KP 148
+F+ Y+ +++ K + + + SP ++ T Y A
Sbjct: 12 GSFVDYQTTMVR-TAKAIAVTVQEMVTKSNTSPEELGPLANQLTSDYGRLASQAKPAAVA 70
Query: 149 TVNEDPNTRIIRELHDEITKLKAMLTSVKV------NSVARQQLLSKAQQTQGNQPQMLA 202
NE+ I + + A++T + +++L+ A++ +LA
Sbjct: 71 AENEEIGAHIKHRVQELGHGCSALVTKAGALQCSPSDVYTKKELIECARRVSEKVSHVLA 130
Query: 203 ALQA 206
ALQA
Sbjct: 131 ALQA 134
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein,
redox-active center; HET: MES; 1.90A {Escherichia coli}
SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A
2iyj_A
Length = 216
Score = 26.8 bits (58), Expect = 6.9
Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 6/105 (5%)
Query: 142 KNIINKPTVNE--DPNTRIIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQ 199
K K + D +LH+++ A+ +V+ + RQ L S A++
Sbjct: 82 KAPQEKHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEK---EMKA 138
Query: 200 MLAALQAKQEQEKVLTEEWAEKWRETQKILQEQQALGLRMGKDGT 244
+ A + + V+ + + + ALG+++G GT
Sbjct: 139 IWCAKDKNKAFDDVMAGKSVAP-ASCDVDIADHYALGVQLGVSGT 182
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 27.1 bits (60), Expect = 7.9
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 261 DLYSTGVTLY 270
D+Y+ G TL
Sbjct: 258 DIYTVGRTLA 267
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding,
polymorphism, DNA binding protein/Z-DNA complex, DNA
binding protein/DNA complex; 1.45A {Homo sapiens} PDB:
2l4m_A
Length = 72
Score = 25.1 bits (54), Expect = 8.7
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 199 QMLAALQAKQEQEKVLTEEWAEKWRETQKILQEQQALGLRMGKDGTGVVLDSDRPHLVRI 258
M + ++Q +E + Q+ L QALG+R KD + HL+ +
Sbjct: 1 HMASPQFSQQREEDIYRFLKDNG---PQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDM 57
Query: 259 DD 260
D+
Sbjct: 58 DE 59
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase,
hexamer, rossmann fold; 2.50A {Thermococcus
kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Length = 338
Score = 26.5 bits (59), Expect = 9.8
Identities = 6/54 (11%), Positives = 17/54 (31%)
Query: 199 QMLAALQAKQEQEKVLTEEWAEKWRETQKILQEQQALGLRMGKDGTGVVLDSDR 252
++ + L + ++ + + R+G+ G + D D
Sbjct: 91 YVMHRGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDV 144
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.387
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,264,300
Number of extensions: 245793
Number of successful extensions: 679
Number of sequences better than 10.0: 1
Number of HSP's gapped: 638
Number of HSP's successfully gapped: 85
Length of query: 288
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 195
Effective length of database: 4,105,140
Effective search space: 800502300
Effective search space used: 800502300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)