RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15556
(288 letters)
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 144 bits (363), Expect = 2e-41
Identities = 61/170 (35%), Positives = 86/170 (50%), Gaps = 10/170 (5%)
Query: 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQYNQGIFYSITGD 61
AV T +N ++ F ++ +L L G +G
Sbjct: 194 AVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKVGKTGA----SGQ 249
Query: 62 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 121
L+E INKSL LG VI++L + KS+ +PYRDS LT +L++SLGGNS+T +I
Sbjct: 250 TLEEAKKINKSLSALGMVINAL---TDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINC 306
Query: 122 SPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKA 171
SP+ N +ETLSTLR+ RAK+I NK VN + + EL + K K
Sbjct: 307 SPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELS---PAELKQMLAKAKT 353
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 139 bits (350), Expect = 2e-39
Identities = 50/147 (34%), Positives = 75/147 (51%), Gaps = 6/147 (4%)
Query: 27 VTIWSHGDFWGQYLKGLFHLIPQYNQGIFYSITGDRLKEGAHINKSLVTLGSVISSLAEL 86
+ + K F + + G++LKE INKSL LG VIS+L+
Sbjct: 209 IESTNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSS- 267
Query: 87 STKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIIN 146
+ IPYR+ LT L+ DSLGGN+KT+M ISPA+ N ET ++L YA+R ++I+N
Sbjct: 268 ---GNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVN 324
Query: 147 KPTVNEDPNTRIIRELHDEITKLKAML 173
P+ N + + L ++ K
Sbjct: 325 DPSKNVSS--KEVARLKKLVSYWKEQA 349
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 132 bits (332), Expect = 3e-37
Identities = 49/121 (40%), Positives = 67/121 (55%), Gaps = 6/121 (4%)
Query: 26 WVTIWSHGDFWGQYLKGLFHL--IPQYNQGIFYSITGDRLKEGAHINKSLVTLGSVISSL 83
+ + Q L G +L + + G L E +INKSL LG+VIS+L
Sbjct: 207 LINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISAL 266
Query: 84 AELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKN 143
AE ST++PYRDS +T +L+DSLGGN +T ++ SP+ N SET STL + RAK
Sbjct: 267 AE----GSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKT 322
Query: 144 I 144
I
Sbjct: 323 I 323
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 132 bits (331), Expect = 5e-37
Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 10/143 (6%)
Query: 1 MAVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQYNQGIFYSITG 60
+G N ++ + S G L G +Q
Sbjct: 198 RKIGVNSQNDESSRSHAILNIDLKDINKNTSLGKIAFIDLAGSERGADTVSQN------K 251
Query: 61 DRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAA 120
+GA+IN+SL+ L I ++ IP+RDS LT +L+D G SK+IMIA
Sbjct: 252 QTQTDGANINRSLLALKECIRAMDS----DKNHIPFRDSELTKVLRDIFVGKSKSIMIAN 307
Query: 121 ISPADVNYSETLSTLRYANRAKN 143
ISP +TL+TLRY++R KN
Sbjct: 308 ISPTISCCEQTLNTLRYSSRVKN 330
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 131 bits (330), Expect = 8e-37
Identities = 38/83 (45%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 62 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 121
RL+E +INKSL LG VI +L + + K IP+R+S LT+LL+ SL G+SKT+M I
Sbjct: 258 RLRETQNINKSLSCLGDVIHALGQPDSTKR-HIPFRNSKLTYLLQYSLTGDSKTLMFVNI 316
Query: 122 SPADVNYSETLSTLRYANRAKNI 144
SP+ + +ETL++LR+A++ +
Sbjct: 317 SPSSSHINETLNSLRFASKVNST 339
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 132 bits (331), Expect = 8e-37
Identities = 68/149 (45%), Positives = 88/149 (59%), Gaps = 8/149 (5%)
Query: 2 AVGDTMLNGCLTKDKQRFPWFVSGWVTIWSHGDFWGQYLKGLFHLIPQYNQGIFYSITGD 61
V T +N ++ F + + K + + G
Sbjct: 201 TVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGT 260
Query: 62 RLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLGGNS 113
RLKEGA+INKSL TLG VIS+LAE+ + KK+ FIPYRDSVLTWLL+++LGGNS
Sbjct: 261 RLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNS 320
Query: 114 KTIMIAAISPADVNYSETLSTLRYANRAK 142
+T M+AA+SPAD+NY ETLSTLRYA+RAK
Sbjct: 321 RTAMVAALSPADINYDETLSTLRYADRAK 349
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 131 bits (331), Expect = 1e-36
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 59 TGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 118
T R+ E +IN+SL L +VI +L + K IPYR+S LT LL SLGGNSKT+M
Sbjct: 287 TSTRMTETKNINRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMF 342
Query: 119 AAISPADVNYSETLSTLRYANRAKN 143
+SP + E++ +LR+A +
Sbjct: 343 INVSPFQDCFQESVKSLRFAASVNS 367
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 127 bits (320), Expect = 3e-35
Identities = 49/107 (45%), Positives = 68/107 (63%), Gaps = 4/107 (3%)
Query: 41 KGLFHLIPQYNQGIFYSITGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSV 100
K + R +E +IN+SL+TLG VI++L E ++ +PYR+S
Sbjct: 243 KLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE----RTPHVPYRESK 298
Query: 101 LTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINK 147
LT +L+DSLGG ++T +IA ISPA +N ETLSTL YA+RAKNI+NK
Sbjct: 299 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 345
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 126 bits (317), Expect = 1e-34
Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Query: 26 WVTIWSHGDFWGQYLKGLFHLIPQYNQGIFYSITGDRLKEGAHINKSLVTLGSVISSLAE 85
+ + + G G++ L L S EGA INKSL+ L I +L +
Sbjct: 248 QILLRTKGRLHGKF--SLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ 305
Query: 86 LSTKKSTFIPYRDSVLTWLLKDS-LGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 144
P+R+S LT +L+DS +G NS+T MIA ISP + TL+TLRYA+R K +
Sbjct: 306 ----NKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 361
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 28.5 bits (63), Expect = 0.36
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 253 PHLVRIDDDLYSTGVTLY 270
PHLV +++D + LY
Sbjct: 2 PHLVNLNEDPLMSECLLY 19
>d1wgwa_ a.24.13.1 (A:) Signal recognition particle 54 kDa protein,
SRP54 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 27.4 bits (61), Expect = 0.71
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 117 MIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTR--IIRELHDEITKLKA 171
+ A+ ADVN + K+ I+ + N R I + E+ K+K
Sbjct: 39 VCTALLEADVNIK---LVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKVKV 92
>d1mbya_ d.223.1.1 (A:) Serine/threonine-protein kinase Sak
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 25.9 bits (57), Expect = 1.8
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 25 GWVTIWSHGDFWGQYLKGLFHLIPQYNQGIFYS 57
GW T + G W Q+ G ++ I Y+
Sbjct: 8 GWATQLTSGAVWVQFNDGSQLVMQAGVSSISYT 40
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 27.4 bits (60), Expect = 2.3
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 155 NTRIIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQTQGNQPQMLAALQAKQEQEKVL 214
T +E+ E K ++ S K+ +++ +Q + + + L L K E ++V
Sbjct: 199 LTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQ 258
Query: 215 TEEWAEKWRETQKILQEQQAL 235
+ E+ R LQEQ+ L
Sbjct: 259 LLK--EQERTLALKLQEQEQL 277
>d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf
complex {Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 127
Score = 25.8 bits (56), Expect = 4.3
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 12 LTKDKQRFPWFVSGWVTIWSHGD 34
+ KD + W+ + GD
Sbjct: 2 IAKDALGNDVIAAEWLKTHAPGD 24
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId:
6239]}
Length = 50
Score = 24.0 bits (52), Expect = 4.5
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 185 QLLSKAQQTQGNQPQMLAALQAKQEQEKVLTEEWAEKWRE 224
+L+ Q+T LA+LQ +VL E+ RE
Sbjct: 11 ELMEHVQKTGEVNNAKLASLQ------QVLQSEFFGAVRE 44
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 57
Score = 24.0 bits (52), Expect = 5.5
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 185 QLLSKAQQTQGNQPQMLAALQAKQEQEKVLTEEWAEKWRE 224
+LL + Q++ PQ L ALQ +VL + RE
Sbjct: 12 ELLERLQRSGELPPQKLQALQ------RVLQSRFCSAIRE 45
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId:
7242]}
Length = 107
Score = 24.9 bits (54), Expect = 6.9
Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 8/102 (7%)
Query: 135 LRYANRAKNIIN--KPTVNEDPNTRIIRELHDEITKLKAMLTSVKVNSVARQQLLSKAQQ 192
+R A++ ++ + +N D + + I K + ++ + L + A Q
Sbjct: 9 MRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQTVADQ 68
Query: 193 TQGNQPQMLAALQAKQEQEKVLTEEWA---EKWRETQKILQE 231
+ K++Q + E W E E + L +
Sbjct: 69 LIAQNHYASNLVDEKRKQ---VLERWRHLKEGLIEKRSRLGD 107
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain
{Escherichia coli [TaxId: 562]}
Length = 61
Score = 23.4 bits (51), Expect = 8.5
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 184 QQLLSKAQQTQGNQPQMLAALQAKQEQEKVLTEEWAEKWRETQKILQE 231
Q ++ +A + + +Q A +A+QE+ K++ + AE E ++ +E
Sbjct: 12 QVIIEQANK-RRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREE 58
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 23.9 bits (52), Expect = 9.2
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
Query: 145 INKPTVNEDPNTRIIRELHDEITKL 169
I + E IR+L+DEI KL
Sbjct: 38 IQNAGLGEFR----IRDLNDEINKL 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.387
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,022,223
Number of extensions: 44674
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 23
Length of query: 288
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 204
Effective length of database: 1,254,276
Effective search space: 255872304
Effective search space used: 255872304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)