Query psy15557
Match_columns 207
No_of_seqs 127 out of 244
Neff 3.8
Searched_HMMs 46136
Date Sat Aug 17 00:19:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15557.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15557hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1387|consensus 100.0 2.2E-75 4.7E-80 536.4 18.6 170 30-199 17-190 (465)
2 PLN02949 transferase, transfer 100.0 7.1E-60 1.5E-64 437.2 18.0 180 9-201 1-180 (463)
3 cd03806 GT1_ALG11_like This fa 100.0 3.8E-48 8.2E-53 349.7 15.6 147 53-200 1-148 (419)
4 cd03805 GT1_ALG2_like This fam 98.5 1.8E-06 3.9E-11 74.6 12.6 123 54-192 2-126 (392)
5 cd03804 GT1_wbaZ_like This fam 97.8 2.6E-05 5.7E-10 67.0 5.2 112 55-191 2-113 (351)
6 PF13439 Glyco_transf_4: Glyco 97.5 0.00096 2.1E-08 50.1 9.3 112 56-194 2-114 (177)
7 cd01635 Glycosyltransferase_GT 96.8 0.014 3E-07 45.0 9.0 86 57-197 3-91 (229)
8 cd03811 GT1_WabH_like This fam 96.6 0.016 3.5E-07 46.8 8.5 37 55-94 2-38 (353)
9 cd03809 GT1_mtfB_like This fam 96.5 0.015 3.3E-07 48.3 8.2 108 55-189 2-111 (365)
10 cd03807 GT1_WbnK_like This fam 96.1 0.16 3.4E-06 41.5 12.0 111 55-191 2-114 (365)
11 cd03818 GT1_ExpC_like This fam 96.1 0.052 1.1E-06 48.3 9.8 102 75-194 16-122 (396)
12 cd03801 GT1_YqgM_like This fam 95.9 0.09 2E-06 42.3 9.3 118 55-194 2-121 (374)
13 cd03823 GT1_ExpE7_like This fa 95.8 0.056 1.2E-06 44.5 8.2 38 54-94 4-41 (359)
14 cd03822 GT1_ecORF704_like This 95.8 0.031 6.8E-07 46.4 6.6 107 55-191 2-115 (366)
15 cd03820 GT1_amsD_like This fam 95.6 0.17 3.6E-06 41.0 10.0 117 55-195 2-119 (348)
16 KOG0853|consensus 95.1 0.027 5.9E-07 54.9 4.6 133 53-192 35-181 (495)
17 PRK00726 murG undecaprenyldiph 95.0 0.26 5.6E-06 43.0 10.1 112 65-190 11-123 (357)
18 PRK09922 UDP-D-galactose:(gluc 95.0 0.24 5.2E-06 43.6 9.9 41 54-94 2-42 (359)
19 cd04955 GT1_like_6 This family 95.0 0.54 1.2E-05 39.7 11.4 38 55-94 2-41 (363)
20 cd03785 GT1_MurG MurG is an N- 94.8 0.38 8.1E-06 41.3 10.2 114 62-190 6-121 (350)
21 cd03802 GT1_AviGT4_like This f 94.7 0.39 8.4E-06 40.2 9.8 105 63-194 16-120 (335)
22 cd03819 GT1_WavL_like This fam 94.2 1 2.2E-05 38.0 11.4 105 59-189 4-109 (355)
23 cd03796 GT1_PIG-A_like This fa 94.1 0.81 1.8E-05 40.9 11.2 112 56-189 7-121 (398)
24 PRK10307 putative glycosyl tra 93.5 0.39 8.4E-06 42.9 8.0 33 57-94 9-41 (412)
25 cd03821 GT1_Bme6_like This fam 93.4 0.93 2E-05 37.2 9.5 38 55-94 2-40 (375)
26 cd03794 GT1_wbuB_like This fam 93.4 1.4 3.1E-05 36.1 10.6 115 62-189 10-132 (394)
27 cd03812 GT1_CapH_like This fam 93.3 2.3 5E-05 35.9 11.9 37 55-94 2-38 (358)
28 cd04962 GT1_like_5 This family 92.9 2.2 4.8E-05 36.4 11.3 29 64-94 10-38 (371)
29 cd03817 GT1_UGDG_like This fam 92.6 1.5 3.2E-05 36.1 9.6 107 62-191 10-118 (374)
30 cd03798 GT1_wlbH_like This fam 92.6 1.8 3.8E-05 35.2 9.9 29 65-95 13-41 (377)
31 cd03825 GT1_wcfI_like This fam 92.4 0.71 1.5E-05 38.8 7.7 37 55-94 3-39 (365)
32 cd03808 GT1_cap1E_like This fa 91.8 5.5 0.00012 32.3 11.9 109 55-189 2-112 (359)
33 TIGR03088 stp2 sugar transfera 91.5 3.5 7.6E-05 35.9 11.1 28 54-82 3-30 (374)
34 PF08660 Alg14: Oligosaccharid 91.3 2.6 5.7E-05 35.2 9.8 61 121-185 57-125 (170)
35 cd03800 GT1_Sucrose_synthase T 90.0 7 0.00015 33.5 11.6 27 66-94 21-47 (398)
36 TIGR01133 murG undecaprenyldip 89.4 4.1 8.9E-05 34.9 9.6 109 67-189 12-121 (348)
37 TIGR03472 HpnI hopanoid biosyn 89.2 6.5 0.00014 35.6 11.2 77 30-110 18-95 (373)
38 cd03814 GT1_like_2 This family 88.6 3.5 7.5E-05 34.1 8.4 29 64-94 12-40 (364)
39 cd04951 GT1_WbdM_like This fam 87.4 4.5 9.8E-05 34.0 8.5 110 55-191 2-113 (360)
40 TIGR03449 mycothiol_MshA UDP-N 85.5 7.1 0.00015 34.4 9.1 39 54-94 8-46 (405)
41 PRK12446 undecaprenyldiphospho 85.2 10 0.00022 34.4 10.2 48 138-185 70-118 (352)
42 PF13579 Glyco_trans_4_4: Glyc 84.9 2.6 5.6E-05 30.9 5.2 101 66-189 1-104 (160)
43 cd03792 GT1_Trehalose_phosphor 84.3 14 0.00031 32.4 10.4 109 64-192 10-118 (372)
44 KOG3339|consensus 84.3 23 0.0005 31.5 11.5 113 39-166 24-139 (211)
45 cd03795 GT1_like_4 This family 82.7 18 0.0004 30.2 10.0 33 57-94 8-40 (357)
46 cd03789 GT1_LPS_heptosyltransf 79.8 20 0.00043 30.7 9.4 94 68-186 11-107 (279)
47 cd03799 GT1_amsK_like This is 79.6 35 0.00077 28.5 11.5 36 55-94 2-37 (355)
48 PLN02871 UDP-sulfoquinovose:DA 78.1 26 0.00057 32.4 10.3 40 53-95 59-101 (465)
49 COG2159 Predicted metal-depend 75.9 41 0.00089 30.3 10.7 115 57-196 131-260 (293)
50 PF12000 Glyco_trans_4_3: Gkyc 75.5 14 0.00031 31.3 7.2 73 117-190 19-97 (171)
51 PRK10017 colanic acid biosynth 74.1 17 0.00038 34.5 8.2 43 55-99 5-47 (426)
52 PF13344 Hydrolase_6: Haloacid 73.7 6.1 0.00013 29.9 4.2 39 74-115 21-59 (101)
53 PRK15179 Vi polysaccharide bio 72.1 78 0.0017 32.3 12.6 28 54-82 283-310 (694)
54 TIGR02193 heptsyl_trn_I lipopo 71.9 20 0.00043 31.2 7.4 90 72-180 16-106 (319)
55 cd03816 GT1_ALG1_like This fam 71.8 63 0.0014 29.5 11.0 110 63-189 12-129 (415)
56 TIGR03111 glyc2_xrt_Gpos1 puta 66.7 78 0.0017 29.6 10.6 56 51-110 47-105 (439)
57 COG0416 PlsX Fatty acid/phosph 64.1 98 0.0021 29.4 10.7 129 62-200 8-145 (338)
58 PF03808 Glyco_tran_WecB: Glyc 63.6 16 0.00034 30.1 4.9 60 54-126 50-111 (172)
59 PRK11204 N-glycosyltransferase 62.1 1.2E+02 0.0027 27.4 13.7 53 53-109 54-107 (420)
60 TIGR02195 heptsyl_trn_II lipop 61.8 61 0.0013 28.4 8.5 88 73-185 17-106 (334)
61 cd02989 Phd_like_TxnDC9 Phosdu 61.6 46 0.001 25.3 6.9 65 52-130 24-88 (113)
62 COG0707 MurG UDP-N-acetylgluco 60.7 1.3E+02 0.0029 28.0 10.9 49 142-192 74-123 (357)
63 cd02957 Phd_like Phosducin (Ph 58.2 45 0.00099 24.9 6.2 63 53-130 27-89 (113)
64 TIGR02149 glgA_Coryne glycogen 57.1 1.3E+02 0.0028 26.0 10.8 38 55-93 3-42 (388)
65 PRK00025 lpxB lipid-A-disaccha 56.9 58 0.0013 28.6 7.6 51 138-189 64-117 (380)
66 PRK02842 light-independent pro 56.8 25 0.00055 33.0 5.6 45 66-110 78-127 (427)
67 PF13528 Glyco_trans_1_3: Glyc 56.6 67 0.0014 27.5 7.7 41 152-194 87-127 (318)
68 PF03948 Ribosomal_L9_C: Ribos 55.9 26 0.00057 26.3 4.5 45 76-120 4-55 (87)
69 PLN02204 diacylglycerol kinase 55.9 62 0.0014 32.8 8.4 54 49-106 157-211 (601)
70 cd01979 Pchlide_reductase_N Pc 55.8 27 0.00059 32.3 5.5 54 56-109 58-116 (396)
71 cd04949 GT1_gtfA_like This fam 55.4 88 0.0019 27.1 8.4 86 71-187 221-308 (372)
72 TIGR02201 heptsyl_trn_III lipo 55.0 1.5E+02 0.0032 26.2 9.8 89 74-185 18-109 (344)
73 TIGR00595 priA primosomal prot 54.6 25 0.00054 34.1 5.3 38 67-108 270-310 (505)
74 PF02504 FA_synthesis: Fatty a 53.0 54 0.0012 30.6 7.0 122 62-194 7-134 (323)
75 PF06522 B12D: NADH-ubiquinone 52.3 25 0.00053 25.8 3.8 41 129-169 1-41 (73)
76 COG2805 PilT Tfp pilus assembl 52.1 20 0.00043 34.2 4.0 70 88-164 127-203 (353)
77 TIGR01456 CECR5 HAD-superfamil 52.1 16 0.00035 32.8 3.4 50 68-117 14-68 (321)
78 PRK14583 hmsR N-glycosyltransf 52.0 2E+02 0.0044 26.8 12.8 52 53-108 75-127 (444)
79 PRK15411 rcsA colanic acid cap 51.8 36 0.00077 28.6 5.2 22 74-95 66-87 (207)
80 COG0763 LpxB Lipid A disacchar 51.3 1.3E+02 0.0029 29.0 9.4 94 87-188 3-118 (381)
81 PF04007 DUF354: Protein of un 50.7 2E+02 0.0044 26.7 10.4 95 75-194 19-116 (335)
82 TIGR00696 wecB_tagA_cpsF bacte 50.2 68 0.0015 27.0 6.7 61 53-126 49-110 (177)
83 PRK14716 bacteriophage N4 adso 48.3 2.8E+02 0.0061 27.3 12.0 56 51-110 64-121 (504)
84 cd02508 ADP_Glucose_PP ADP-glu 48.2 1.5E+02 0.0032 24.1 9.0 78 68-157 28-108 (200)
85 PF07745 Glyco_hydro_53: Glyco 48.1 68 0.0015 29.9 6.9 101 53-172 135-242 (332)
86 PRK03147 thiol-disulfide oxido 47.4 1.3E+02 0.0029 23.3 8.7 54 53-113 64-119 (173)
87 CHL00073 chlN photochlorophyll 47.0 46 0.001 32.4 5.8 47 67-113 80-130 (457)
88 TIGR02655 circ_KaiC circadian 46.4 79 0.0017 30.2 7.2 68 85-168 291-363 (484)
89 TIGR03702 lip_kinase_YegS lipi 46.3 48 0.001 29.2 5.3 39 67-107 11-49 (293)
90 PF11669 WBP-1: WW domain-bind 45.9 69 0.0015 25.0 5.6 19 3-22 14-32 (102)
91 COG2710 NifD Nitrogenase molyb 45.5 38 0.00082 32.4 4.9 48 64-111 90-141 (456)
92 cd08412 PBP2_PAO1_like The C-t 45.3 53 0.0011 24.4 4.8 36 68-107 11-46 (198)
93 PRK11121 nrdG anaerobic ribonu 45.1 46 0.001 27.0 4.7 28 67-94 73-107 (154)
94 PRK05331 putative phosphate ac 44.9 2.3E+02 0.005 26.3 9.8 116 61-192 7-133 (334)
95 PRK10916 ADP-heptose:LPS hepto 44.5 1.8E+02 0.0039 25.8 8.8 84 74-182 19-102 (348)
96 PF14492 EFG_II: Elongation Fa 44.4 19 0.00041 26.0 2.2 49 67-115 16-72 (75)
97 PF05393 Hum_adeno_E3A: Human 44.3 52 0.0011 26.1 4.6 17 4-22 28-44 (94)
98 TIGR01284 alt_nitrog_alph nitr 44.0 55 0.0012 31.2 5.7 57 67-129 107-168 (457)
99 TIGR00439 ftsX putative protei 43.9 2.5E+02 0.0055 25.5 10.0 48 53-111 67-114 (309)
100 PF13028 DUF3889: Protein of u 43.8 23 0.0005 27.9 2.7 40 75-118 30-71 (97)
101 COG1412 Uncharacterized protei 43.4 68 0.0015 26.5 5.5 37 87-136 99-135 (136)
102 PF13727 CoA_binding_3: CoA-bi 43.3 25 0.00055 27.0 2.9 41 64-108 85-139 (175)
103 cd01967 Nitrogenase_MoFe_alpha 43.3 63 0.0014 29.5 5.8 45 67-111 70-118 (406)
104 PTZ00370 STEVOR; Provisional 43.0 31 0.00066 32.2 3.7 22 27-48 263-284 (296)
105 PRK04457 spermidine synthase; 42.9 70 0.0015 28.1 5.9 49 77-130 82-130 (262)
106 PRK10422 lipopolysaccharide co 42.2 2.3E+02 0.0051 25.2 9.2 103 55-185 8-114 (352)
107 cd08436 PBP2_LTTR_like_3 The C 41.8 67 0.0014 23.6 4.8 37 68-108 11-47 (194)
108 TIGR01282 nifD nitrogenase mol 41.8 60 0.0013 31.2 5.6 45 67-111 114-163 (466)
109 TIGR01283 nifE nitrogenase mol 41.7 63 0.0014 30.5 5.7 45 67-111 104-152 (456)
110 PF09183 DUF1947: Domain of un 41.5 26 0.00055 26.0 2.4 31 98-128 9-39 (65)
111 cd08416 PBP2_MdcR The C-termin 41.4 1.5E+02 0.0032 22.1 6.7 28 67-94 10-37 (199)
112 cd01973 Nitrogenase_VFe_beta_l 41.3 89 0.0019 29.9 6.7 60 67-126 69-133 (454)
113 cd08450 PBP2_HcaR The C-termin 41.2 1.2E+02 0.0026 22.5 6.2 37 68-108 11-47 (196)
114 TIGR01458 HAD-SF-IIA-hyp3 HAD- 41.0 47 0.001 28.8 4.4 39 74-115 28-66 (257)
115 TIGR01457 HAD-SF-IIA-hyp2 HAD- 40.9 55 0.0012 28.2 4.8 39 74-115 24-62 (249)
116 PRK10125 putative glycosyl tra 40.7 41 0.00088 31.1 4.2 31 64-94 11-41 (405)
117 TIGR02491 NrdG anaerobic ribon 40.7 74 0.0016 25.7 5.3 35 67-104 71-112 (154)
118 cd01977 Nitrogenase_VFe_alpha 40.5 72 0.0016 29.7 5.9 67 57-130 61-132 (415)
119 cd01968 Nitrogenase_NifE_I Nit 40.5 72 0.0016 29.5 5.8 45 67-111 69-117 (410)
120 TIGR03584 PseF pseudaminic aci 39.7 2.4E+02 0.0051 24.0 8.7 81 67-168 22-103 (222)
121 cd08466 PBP2_LeuO The C-termin 39.4 72 0.0016 23.9 4.7 36 68-107 11-46 (200)
122 TIGR02826 RNR_activ_nrdG3 anae 39.4 58 0.0013 26.6 4.5 41 67-111 69-111 (147)
123 TIGR01860 VNFD nitrogenase van 39.2 71 0.0015 30.6 5.7 47 63-110 106-157 (461)
124 cd01976 Nitrogenase_MoFe_alpha 39.1 73 0.0016 30.0 5.7 53 58-111 73-130 (421)
125 PRK12361 hypothetical protein; 39.0 1.2E+02 0.0026 29.3 7.3 54 51-108 242-295 (547)
126 cd08452 PBP2_AlsR The C-termin 38.9 71 0.0015 24.2 4.7 38 67-108 10-47 (197)
127 PLN02958 diacylglycerol kinase 38.7 1.6E+02 0.0034 28.6 8.0 54 51-106 111-164 (481)
128 cd08486 PBP2_CbnR The C-termin 38.2 1.1E+02 0.0024 23.4 5.7 46 53-108 3-48 (198)
129 PLN02645 phosphoglycolate phos 38.1 62 0.0013 28.9 4.8 42 74-118 51-92 (311)
130 KOG1365|consensus 38.1 5.8 0.00013 38.7 -1.8 22 53-74 177-198 (508)
131 cd01972 Nitrogenase_VnfE_like 38.0 76 0.0016 29.7 5.6 46 67-112 72-121 (426)
132 cd08437 PBP2_MleR The substrat 37.9 1.7E+02 0.0037 21.8 6.9 56 69-128 12-75 (198)
133 COG1922 WecG Teichoic acid bio 37.2 79 0.0017 28.7 5.4 49 53-108 109-159 (253)
134 cd03791 GT1_Glycogen_synthase_ 37.0 3.3E+02 0.0071 24.9 9.9 33 59-94 10-42 (476)
135 PRK10964 ADP-heptose:LPS hepto 37.0 1.9E+02 0.004 25.4 7.6 93 74-185 19-113 (322)
136 cd07399 MPP_YvnB Bacillus subt 36.8 98 0.0021 26.0 5.6 55 40-95 95-158 (214)
137 PRK10444 UMP phosphatase; Prov 36.6 63 0.0014 28.2 4.6 42 74-118 24-65 (248)
138 PF14979 TMEM52: Transmembrane 36.5 99 0.0022 26.5 5.5 23 91-113 115-137 (154)
139 cd08465 PBP2_ToxR The C-termin 36.1 78 0.0017 24.2 4.6 37 68-108 11-47 (200)
140 PF03159 XRN_N: XRN 5'-3' exon 35.9 56 0.0012 29.0 4.2 58 38-95 156-216 (237)
141 PF03466 LysR_substrate: LysR 35.9 1.2E+02 0.0026 22.9 5.5 65 53-127 8-78 (209)
142 cd06533 Glyco_transf_WecG_TagA 35.8 1.4E+02 0.003 24.5 6.3 61 53-126 47-109 (171)
143 PRK13609 diacylglycerol glucos 35.7 1.6E+02 0.0035 26.1 7.0 40 149-189 94-135 (380)
144 cd00316 Oxidoreductase_nitroge 35.7 89 0.0019 28.1 5.5 45 64-109 61-109 (399)
145 PRK01021 lpxB lipid-A-disaccha 35.2 2.6E+02 0.0055 28.6 9.0 96 83-188 224-343 (608)
146 cd06425 M1P_guanylylT_B_like_N 34.8 1.4E+02 0.003 24.7 6.2 36 68-107 30-65 (233)
147 cd08461 PBP2_DntR_like_3 The C 34.6 59 0.0013 24.3 3.6 27 68-94 11-37 (198)
148 PF02873 MurB_C: UDP-N-acetyle 34.4 32 0.00069 27.0 2.1 35 85-122 63-104 (105)
149 cd05844 GT1_like_7 Glycosyltra 34.3 2.7E+02 0.0059 23.6 8.0 36 154-190 77-114 (367)
150 TIGR03492 conserved hypothetic 34.1 1.5E+02 0.0032 27.6 6.8 107 65-186 5-118 (396)
151 PF03698 UPF0180: Uncharacteri 34.0 61 0.0013 24.6 3.6 27 84-110 34-79 (80)
152 cd08439 PBP2_LrhA_like The C-t 33.8 1E+02 0.0022 23.0 4.8 37 68-108 11-47 (185)
153 cd08427 PBP2_LTTR_like_2 The C 33.7 90 0.0019 23.1 4.4 37 68-108 11-47 (195)
154 TIGR02706 P_butyryltrans phosp 33.6 2.8E+02 0.0062 25.0 8.4 79 53-164 14-92 (294)
155 COG1211 IspD 4-diphosphocytidy 33.0 2.2E+02 0.0049 25.3 7.5 85 67-174 30-115 (230)
156 PF02358 Trehalose_PPase: Treh 33.0 20 0.00044 30.2 0.9 48 53-109 155-206 (235)
157 COG0381 WecB UDP-N-acetylgluco 32.7 3.2E+02 0.007 26.4 8.9 77 76-167 23-103 (383)
158 PRK13337 putative lipid kinase 32.5 1.6E+02 0.0034 26.1 6.4 52 53-107 3-54 (304)
159 COG0796 MurI Glutamate racemas 32.4 95 0.002 28.5 5.1 50 53-111 6-61 (269)
160 PRK11475 DNA-binding transcrip 32.3 84 0.0018 26.7 4.5 31 74-106 57-87 (207)
161 PRK13905 murB UDP-N-acetylenol 32.0 63 0.0014 29.0 3.9 35 85-122 254-295 (298)
162 TIGR02932 vnfK_nitrog V-contai 31.9 1.5E+02 0.0032 28.6 6.5 61 67-127 72-137 (457)
163 PF00072 Response_reg: Respons 31.8 1.6E+02 0.0035 20.5 5.4 32 74-107 60-91 (112)
164 TIGR01460 HAD-SF-IIA Haloacid 31.7 86 0.0019 26.7 4.5 48 69-116 13-61 (236)
165 COG1625 Fe-S oxidoreductase, r 31.4 79 0.0017 30.8 4.6 114 57-180 182-308 (414)
166 PRK05749 3-deoxy-D-manno-octul 31.3 4E+02 0.0086 24.1 13.4 37 67-105 61-97 (425)
167 COG0859 RfaF ADP-heptose:LPS h 30.6 2.7E+02 0.0058 25.0 7.7 84 72-179 18-101 (334)
168 cd08414 PBP2_LTTR_aromatics_li 30.5 1.3E+02 0.0028 22.1 4.8 37 68-108 11-47 (197)
169 PRK14649 UDP-N-acetylenolpyruv 30.4 62 0.0014 29.3 3.6 34 85-121 253-293 (295)
170 cd08431 PBP2_HupR The C-termin 30.3 64 0.0014 24.1 3.2 27 68-94 11-37 (195)
171 TIGR01861 ANFD nitrogenase iro 30.2 1.3E+02 0.0027 29.7 5.9 44 67-110 110-158 (513)
172 PF05568 ASFV_J13L: African sw 30.1 82 0.0018 27.3 4.1 10 54-63 67-76 (189)
173 PF15102 TMEM154: TMEM154 prot 30.0 26 0.00056 29.6 1.0 11 85-95 109-119 (146)
174 cd02948 TRX_NDPK TRX domain, T 29.9 2.2E+02 0.0048 20.7 6.8 66 53-131 20-85 (102)
175 cd08468 PBP2_Pa0477 The C-term 29.8 2.5E+02 0.0054 21.3 6.8 56 69-128 12-76 (202)
176 PF13394 Fer4_14: 4Fe-4S singl 29.8 21 0.00045 26.6 0.4 23 72-94 67-89 (119)
177 cd08485 PBP2_ClcR The C-termin 29.7 1.3E+02 0.0029 22.8 4.9 36 68-107 12-47 (198)
178 PF02009 Rifin_STEVOR: Rifin/s 29.6 86 0.0019 29.0 4.4 6 42-47 281-286 (299)
179 PRK14478 nitrogenase molybdenu 29.4 1.3E+02 0.0027 29.0 5.7 45 67-111 102-150 (475)
180 PRK14650 UDP-N-acetylenolpyruv 29.2 85 0.0018 28.9 4.3 35 85-122 258-299 (302)
181 cd01965 Nitrogenase_MoFe_beta_ 29.2 2E+02 0.0043 26.8 6.8 52 58-110 56-111 (428)
182 TIGR01068 thioredoxin thioredo 29.2 1.7E+02 0.0038 20.0 5.1 52 52-113 16-67 (101)
183 COG4671 Predicted glycosyl tra 29.0 2.3E+02 0.0051 27.6 7.3 82 76-172 32-118 (400)
184 TIGR00179 murB UDP-N-acetyleno 28.9 70 0.0015 28.7 3.7 35 85-122 242-283 (284)
185 PRK11026 ftsX cell division AB 28.4 4.6E+02 0.0099 23.9 11.2 48 53-111 67-114 (309)
186 PF02519 Auxin_inducible: Auxi 28.3 96 0.0021 24.1 3.9 35 81-115 34-80 (100)
187 PRK11234 nfrB bacteriophage N4 28.3 6.8E+02 0.015 25.9 11.5 57 50-110 60-118 (727)
188 COG1198 PriA Primosomal protei 28.3 90 0.0019 32.4 4.7 77 55-142 474-557 (730)
189 cd01981 Pchlide_reductase_B Pc 28.0 1.2E+02 0.0026 28.2 5.2 46 63-109 64-114 (430)
190 PF12847 Methyltransf_18: Meth 28.0 1.6E+02 0.0035 20.9 4.9 37 82-124 22-59 (112)
191 cd08442 PBP2_YofA_SoxR_like Th 27.8 1.2E+02 0.0027 22.2 4.3 35 69-107 12-46 (193)
192 PLN03017 trehalose-phosphatase 27.8 98 0.0021 29.4 4.6 52 55-115 273-333 (366)
193 COG4936 PocR Predicted sensor 27.6 48 0.001 28.6 2.2 84 97-186 6-102 (169)
194 TIGR00067 glut_race glutamate 27.4 1.1E+02 0.0024 26.9 4.6 37 74-111 12-54 (251)
195 PRK11716 DNA-binding transcrip 27.3 2.3E+02 0.0049 23.1 6.2 49 49-107 65-113 (269)
196 PF05193 Peptidase_M16_C: Pept 27.3 88 0.0019 23.4 3.5 34 76-111 7-42 (184)
197 PRK13906 murB UDP-N-acetylenol 27.2 84 0.0018 28.6 3.9 35 85-122 259-300 (307)
198 KOG4169|consensus 27.1 91 0.002 28.7 4.0 89 53-158 31-124 (261)
199 TIGR02174 CXXU_selWTH selT/sel 27.0 1.7E+02 0.0038 20.9 4.8 64 61-144 5-70 (72)
200 PRK08533 flagellar accessory p 27.0 3.9E+02 0.0084 22.9 7.8 45 66-115 34-79 (230)
201 cd08464 PBP2_DntR_like_2 The C 26.8 99 0.0021 23.0 3.6 27 68-94 11-37 (200)
202 PF01972 SDH_sah: Serine dehyd 26.6 5.4E+02 0.012 24.1 9.2 13 48-60 45-57 (285)
203 cd08462 PBP2_NodD The C-termin 26.5 1.4E+02 0.003 22.6 4.5 36 68-108 11-46 (200)
204 PRK12436 UDP-N-acetylenolpyruv 26.4 88 0.0019 28.4 3.9 35 85-122 259-300 (305)
205 PRK13059 putative lipid kinase 26.4 2.2E+02 0.0049 25.1 6.3 53 53-108 3-55 (295)
206 cd08456 PBP2_LysR The C-termin 26.2 1.6E+02 0.0036 21.7 4.7 28 67-94 10-37 (196)
207 TIGR03611 RutD pyrimidine util 26.2 3E+02 0.0066 21.5 6.5 19 136-154 80-98 (257)
208 PRK13054 lipid kinase; Reviewe 26.2 1.7E+02 0.0037 25.8 5.5 48 54-107 6-53 (300)
209 PF00578 AhpC-TSA: AhpC/TSA fa 26.1 1.3E+02 0.0028 21.8 4.1 38 53-94 28-68 (124)
210 PF05717 TnpB_IS66: IS66 Orf2 25.9 1.5E+02 0.0033 23.2 4.6 42 85-127 1-44 (107)
211 cd04185 GT_2_like_b Subfamily 25.8 1.9E+02 0.0041 22.7 5.3 43 68-110 8-51 (202)
212 cd08413 PBP2_CysB_like The C-t 25.7 1.2E+02 0.0027 23.0 4.1 37 67-107 10-46 (198)
213 PRK05057 aroK shikimate kinase 25.6 1.8E+02 0.0039 23.6 5.2 61 87-171 98-158 (172)
214 PF09983 DUF2220: Uncharacteri 25.6 1E+02 0.0022 25.8 3.8 27 88-115 88-114 (181)
215 PRK00046 murB UDP-N-acetylenol 25.5 77 0.0017 29.6 3.4 34 85-121 293-333 (334)
216 PF05568 ASFV_J13L: African sw 25.3 1.2E+02 0.0026 26.3 4.3 15 4-18 17-31 (189)
217 cd08411 PBP2_OxyR The C-termin 25.1 1.7E+02 0.0036 21.9 4.6 37 68-108 12-48 (200)
218 CHL00076 chlB photochlorophyll 25.1 1.4E+02 0.003 29.2 5.1 46 64-109 65-114 (513)
219 cd02962 TMX2 TMX2 family; comp 25.1 3E+02 0.0066 22.6 6.5 53 53-114 50-102 (152)
220 cd08421 PBP2_LTTR_like_1 The C 25.1 2.9E+02 0.0062 20.4 6.2 57 68-128 11-73 (198)
221 cd08463 PBP2_DntR_like_4 The C 25.0 1.5E+02 0.0033 22.8 4.6 66 68-136 11-84 (203)
222 PRK13846 putative glycerol-3-p 24.9 5.3E+02 0.011 24.2 8.7 122 61-195 8-138 (316)
223 PF00702 Hydrolase: haloacid d 24.8 42 0.00092 26.5 1.4 33 74-112 134-166 (215)
224 PRK04175 rpl7ae 50S ribosomal 24.6 1.2E+02 0.0025 24.2 3.9 27 76-106 39-65 (122)
225 PF09534 Trp_oprn_chp: Tryptop 24.6 83 0.0018 27.1 3.2 14 64-77 170-183 (189)
226 PLN00197 beta-amylase; Provisi 24.3 65 0.0014 32.6 2.8 77 59-141 448-532 (573)
227 cd03812 GT1_CapH_like This fam 24.2 2.5E+02 0.0054 23.6 6.0 47 71-123 209-255 (358)
228 COG3529 Predicted nucleic-acid 24.1 41 0.00089 25.0 1.1 14 48-61 53-66 (66)
229 PF04693 DDE_Tnp_2: Archaeal p 24.0 70 0.0015 30.3 2.8 36 86-121 252-287 (327)
230 PRK05749 3-deoxy-D-manno-octul 24.0 1.3E+02 0.0028 27.2 4.5 42 66-108 243-284 (425)
231 TIGR00484 EF-G translation elo 24.0 1E+02 0.0022 30.9 4.1 57 68-124 418-482 (689)
232 TIGR02110 PQQ_syn_pqqF coenzym 23.9 1.8E+02 0.004 29.8 5.9 52 58-111 148-208 (696)
233 PF00148 Oxidored_nitro: Nitro 23.7 1.4E+02 0.0031 27.0 4.7 44 68-112 58-106 (398)
234 TIGR00661 MJ1255 conserved hyp 23.6 5E+02 0.011 22.7 9.4 40 148-189 82-121 (321)
235 cd03362 TOPRIM_TopoIA_TopoIII 23.3 1.1E+02 0.0025 24.5 3.6 36 74-112 90-125 (151)
236 PLN02275 transferase, transfer 23.2 5.4E+02 0.012 23.0 12.8 32 63-94 13-44 (371)
237 PRK14652 UDP-N-acetylenolpyruv 23.2 1.1E+02 0.0024 27.8 3.9 35 85-122 257-298 (302)
238 cd08444 PBP2_Cbl The C-termina 23.1 1.6E+02 0.0035 22.3 4.2 39 69-111 12-51 (198)
239 PF01515 PTA_PTB: Phosphate ac 23.0 6E+02 0.013 23.4 9.7 112 53-188 15-151 (319)
240 cd08448 PBP2_LTTR_aromatics_li 23.0 3.1E+02 0.0067 20.1 6.4 37 68-108 11-47 (197)
241 PRK00025 lpxB lipid-A-disaccha 22.9 4.8E+02 0.01 22.8 7.7 95 71-179 206-300 (380)
242 TIGR01452 PGP_euk phosphoglyco 22.8 1.8E+02 0.0039 25.3 5.0 42 73-117 24-65 (279)
243 PRK09257 aromatic amino acid a 22.8 4.4E+02 0.0095 23.7 7.6 40 147-187 106-147 (396)
244 cd01853 Toc34_like Toc34-like 22.6 28 0.0006 30.6 -0.1 20 53-72 202-221 (249)
245 PF07085 DRTGG: DRTGG domain; 22.5 1.3E+02 0.0027 22.4 3.5 38 68-110 48-85 (105)
246 PRK13903 murB UDP-N-acetylenol 22.4 1.3E+02 0.0028 28.4 4.3 36 85-123 318-360 (363)
247 cd08459 PBP2_DntR_NahR_LinR_li 22.3 1.3E+02 0.0027 22.6 3.5 28 68-95 11-38 (201)
248 COG1715 Mrr Restriction endonu 22.1 1.1E+02 0.0024 28.8 3.7 67 87-172 192-258 (308)
249 TIGR02240 PHA_depoly_arom poly 22.1 3.7E+02 0.008 22.4 6.6 30 137-168 92-126 (276)
250 PRK14476 nitrogenase molybdenu 22.0 2.1E+02 0.0045 27.4 5.6 52 58-110 67-122 (455)
251 PF00534 Glycos_transf_1: Glyc 22.0 3.6E+02 0.0078 20.5 7.7 75 41-123 4-79 (172)
252 PF02350 Epimerase_2: UDP-N-ac 22.0 2.9E+02 0.0064 25.2 6.4 69 77-164 1-72 (346)
253 PF00891 Methyltransf_2: O-met 22.0 79 0.0017 26.6 2.6 45 62-123 105-149 (241)
254 cd08417 PBP2_Nitroaromatics_li 21.9 2E+02 0.0043 21.4 4.5 37 68-108 11-47 (200)
255 cd08415 PBP2_LysR_opines_like 21.7 1.8E+02 0.0038 21.5 4.1 36 68-107 11-46 (196)
256 PF14191 YodL: YodL-like 21.4 51 0.0011 26.0 1.2 42 72-115 19-64 (103)
257 TIGR01285 nifN nitrogenase mol 21.4 2.4E+02 0.0051 26.8 5.8 52 58-110 66-121 (432)
258 TIGR03491 RecB family nuclease 21.4 1.5E+02 0.0032 28.3 4.5 52 58-113 317-368 (457)
259 cd08449 PBP2_XapR The C-termin 21.4 2.2E+02 0.0048 21.0 4.6 35 69-107 12-46 (197)
260 PRK15395 methyl-galactoside AB 21.3 4.8E+02 0.01 22.9 7.5 40 53-94 25-64 (330)
261 cd08430 PBP2_IlvY The C-termin 21.3 1.8E+02 0.004 21.4 4.2 35 70-108 13-47 (199)
262 PRK11148 cyclic 3',5'-adenosin 21.2 1.5E+02 0.0034 25.6 4.3 20 74-94 184-203 (275)
263 TIGR03101 hydr2_PEP hydrolase, 21.1 3.8E+02 0.0082 23.8 6.8 17 136-152 99-115 (266)
264 PF09949 DUF2183: Uncharacteri 21.1 3.8E+02 0.0083 20.7 6.0 47 74-126 53-99 (100)
265 cd04949 GT1_gtfA_like This fam 20.9 1.6E+02 0.0035 25.4 4.3 34 158-191 98-131 (372)
266 cd08469 PBP2_PnbR The C-termin 20.8 1.2E+02 0.0026 23.4 3.2 36 68-107 11-46 (221)
267 cd02966 TlpA_like_family TlpA- 20.8 2.8E+02 0.0061 18.8 6.3 51 53-108 22-74 (116)
268 cd06533 Glyco_transf_WecG_TagA 20.7 3.5E+02 0.0076 22.2 6.1 21 151-171 91-111 (171)
269 TIGR00236 wecB UDP-N-acetylglu 20.7 4.6E+02 0.01 23.1 7.2 65 50-122 196-260 (365)
270 PRK03094 hypothetical protein; 20.6 1.4E+02 0.0031 22.8 3.4 27 84-110 34-79 (80)
271 PRK00865 glutamate racemase; P 20.6 2.7E+02 0.0058 24.4 5.6 50 53-111 6-61 (261)
272 PRK12740 elongation factor G; 20.6 1.3E+02 0.0027 29.8 4.0 58 67-124 398-463 (668)
273 cd08467 PBP2_SyrM The C-termin 20.6 1.4E+02 0.003 22.7 3.4 37 68-108 11-47 (200)
274 cd02996 PDI_a_ERp44 PDIa famil 20.5 2.4E+02 0.0053 20.4 4.6 57 53-114 21-78 (108)
275 cd00598 GH18_chitinase-like Th 20.5 2.1E+02 0.0045 23.0 4.6 42 53-94 27-73 (210)
276 PF09865 DUF2092: Predicted pe 20.5 72 0.0016 28.0 2.0 43 64-115 58-108 (214)
277 cd02987 Phd_like_Phd Phosducin 20.5 1.6E+02 0.0035 24.4 4.0 49 53-113 86-134 (175)
278 cd08420 PBP2_CysL_like C-termi 20.4 3.5E+02 0.0076 19.7 6.4 56 69-128 12-73 (201)
279 cd08451 PBP2_BudR The C-termin 20.4 2E+02 0.0043 21.2 4.2 35 70-108 14-48 (199)
280 PF03033 Glyco_transf_28: Glyc 20.4 58 0.0013 24.4 1.3 80 74-169 17-98 (139)
281 TIGR01279 DPOR_bchN light-inde 20.3 1.8E+02 0.0039 27.2 4.7 53 58-111 58-115 (407)
282 PRK11914 diacylglycerol kinase 20.3 2.5E+02 0.0054 24.7 5.4 51 53-107 10-61 (306)
283 PRK13529 malate dehydrogenase; 20.3 4.9E+02 0.011 26.5 7.9 41 152-192 375-420 (563)
284 PLN03220 uncharacterized prote 20.1 1.4E+02 0.0031 24.0 3.4 31 83-113 35-81 (105)
285 PRK11126 2-succinyl-6-hydroxy- 20.1 4.6E+02 0.0099 20.9 6.6 26 135-161 65-90 (242)
286 PRK05256 condesin subunit E; P 20.0 1E+02 0.0022 28.1 2.9 61 97-157 48-111 (238)
No 1
>KOG1387|consensus
Probab=100.00 E-value=2.2e-75 Score=536.39 Aligned_cols=170 Identities=48% Similarity=0.882 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHHhhhh----ccCCccEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHH
Q psy15557 30 VLPISVLLFKYYVSKKRK----SYNVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKR 105 (207)
Q Consensus 30 ~l~~~~~~~r~~~~~k~~----~~~~~~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~ 105 (207)
+++.-+..++.|+-+|.. .+++.++|||||||||||||||||||+||+++|+++||+++||||||.|+||++||+|
T Consensus 17 ~~v~~l~~l~~~l~~k~sl~~~~~k~~ktvgfFHPYCNAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k 96 (465)
T KOG1387|consen 17 VLVYGLIKLLTWLFKKSSLLNRAEKNVKTVGFFHPYCNAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNK 96 (465)
T ss_pred HHHHHHHHHHHHHhhhHHhhhhhhhhceEEEEecccccCCCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHH
Confidence 333334445566554443 4556689999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhHHHHHHHHHHHHHhcCCCCEEEECCCccchHHHHHHhCCCeeE
Q psy15557 106 AHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVA 185 (207)
Q Consensus 106 a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyPl~k~l~g~~V~ 185 (207)
||++|||+||+++|+||+|+-|.|||+++||||||||||||||+||+||+.+++|||||||||||||||++|.|.++||+
T Consensus 97 ~k~~F~idlDs~nI~Fi~Lk~R~lVea~~~~hfTllgQaigsmIl~~Eai~r~~Pdi~IDtMGY~fs~p~~r~l~~~~V~ 176 (465)
T KOG1387|consen 97 VKNKFDIDLDSDNIFFIYLKLRYLVEASTWKHFTLLGQAIGSMILAFEAIIRFPPDIFIDTMGYPFSYPIFRRLRRIPVV 176 (465)
T ss_pred HHHhcCceecccceEEEEEEeeeeeecccccceehHHHHHHHHHHHHHHHHhCCchheEecCCCcchhHHHHHHccCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeCccccccccc
Q psy15557 186 CYIHYPTITKAQSA 199 (207)
Q Consensus 186 ~YvHYPtIStDMl~ 199 (207)
|||||||||||||.
T Consensus 177 aYvHYP~iS~DML~ 190 (465)
T KOG1387|consen 177 AYVHYPTISTDMLK 190 (465)
T ss_pred EEEecccccHHHHH
Confidence 99999999999975
No 2
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=7.1e-60 Score=437.20 Aligned_cols=180 Identities=45% Similarity=0.791 Sum_probs=164.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceE
Q psy15557 9 VVMWLVFLFYSILALILLLIIVLPISVLLFKYYVSKKRKSYNVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKI 88 (207)
Q Consensus 9 ~~~~~~~~~~~~l~~~~~l~~~l~~~~~~~r~~~~~k~~~~~~~~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~ 88 (207)
.+||+++.++.+.. ++++ ...+++|++.+++.+ ++|||||||||+|||||||||+|++++|+++++++|
T Consensus 1 ~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~---~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v 69 (463)
T PLN02949 1 MAIWLILYHLLTSI-------VLLL-VAIALSVLRARRSRK---RAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDC 69 (463)
T ss_pred CcceeeHHHHHHHH-------HHHH-HHHHHHHHhcccCCC---cEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeE
Confidence 36899999988776 3333 344678888776643 589999999999999999999999999999999999
Q ss_pred EEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhHHHHHHHHHHHHHhcCCCCEEEECCC
Q psy15557 89 YIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMG 168 (207)
Q Consensus 89 vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmG 168 (207)
+|||||.|.++++++++++++||++++ ++++||+|++|+|++++.|||||++||++||+++++||+.++.|||||||||
T Consensus 70 ~iyt~~~d~~~~~~l~~~~~~~~i~~~-~~~~~v~l~~~~~~~~~~~~~~t~~~~~~~~~~l~~~~~~~~~p~v~vDt~~ 148 (463)
T PLN02949 70 VIYTGDHDASPDSLAARARDRFGVELL-SPPKVVHLRKRKWIEEETYPRFTMIGQSLGSVYLAWEALCKFTPLYFFDTSG 148 (463)
T ss_pred EEEcCCCCCCHHHHHHHHHhhcceecC-CCceEEEeccccccccccCCceehHHHHHHHHHHHHHHHHhcCCCEEEeCCC
Confidence 999999999999999999999999998 7789999998999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhCCCeeEEeeeCccccccccccc
Q psy15557 169 YAFTYPLFSYIGGSKVACYIHYPTITKAQSALP 201 (207)
Q Consensus 169 yaFtyPl~k~l~g~~V~~YvHYPtIStDMl~~~ 201 (207)
|||+||++| +++|||++|||||+||+||++..
T Consensus 149 ~~~~~pl~~-~~~~~v~~yvH~p~~~~dm~~~v 180 (463)
T PLN02949 149 YAFTYPLAR-LFGCKVVCYTHYPTISSDMISRV 180 (463)
T ss_pred cccHHHHHH-hcCCcEEEEEeCCcchHHHHHHH
Confidence 999999999 77999999999999999997753
No 3
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=3.8e-48 Score=349.66 Aligned_cols=147 Identities=60% Similarity=1.076 Sum_probs=140.6
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcC-ccceee
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLY-RRKFVE 131 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr-~r~lve 131 (207)
++|||||||||+|||||||||+|++++|++.++++|+|||||.+.+.++++++++++|+++++ +++.+|.+. .+.|++
T Consensus 1 ~~~~f~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~-~~~~~~~~~~~~~~~~ 79 (419)
T cd03806 1 NTVGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELD-RPRIVFFLLKYRKLVE 79 (419)
T ss_pred CeEEEECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecC-CCceEEEEecceeeec
Confidence 379999999999999999999999999999999999999999999989999999999999998 889988874 779999
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHhcCCCCEEEECCCccchHHHHHHhCCCeeEEeeeCcccccccccc
Q psy15557 132 ASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKAQSAL 200 (207)
Q Consensus 132 ~~~yp~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyPl~k~l~g~~V~~YvHYPtIStDMl~~ 200 (207)
++.|||||++||++++++++++++.+..|||||||||++|++|+.++++++|+++|||||+||+||++-
T Consensus 80 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~h~P~~~~d~l~~ 148 (419)
T cd03806 80 ASTYPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFTYPLVRLLGGCPVGAYVHYPTISTDMLQK 148 (419)
T ss_pred cccCCceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHhcCCeEEEEecCCcchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999854
No 4
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.52 E-value=1.8e-06 Score=74.62 Aligned_cols=123 Identities=27% Similarity=0.453 Sum_probs=79.7
Q ss_pred EEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCC
Q psy15557 54 TVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEAS 133 (207)
Q Consensus 54 ~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~ 133 (207)
.|.|.||+.+. ||+||+.+.-.+++.++ ++.+.++|...+ +....++..+ ..+++-.. +.++..+
T Consensus 2 kIl~~~~~~~~-gG~e~~~~~la~~L~~~--G~~V~v~~~~~~--~~~~~~~~~~--------~~~~i~~~--~~~~~~~ 66 (392)
T cd03805 2 RVAFIHPDLGI-GGAERLVVDAALALQSR--GHEVTIYTSHHD--PSHCFEETKD--------GTLPVRVR--GDWLPRS 66 (392)
T ss_pred eEEEECCCCCC-chHHHHHHHHHHHHHhC--CCeEEEEcCCCC--chhcchhccC--------CeeEEEEE--eEEEcch
Confidence 48999999985 59999999999999887 789999987522 2222222111 11221111 1234455
Q ss_pred CCCchhhhhHHHHHHHHHHHH--HhcCCCCEEEECCCccchHHHHHHhCCCeeEEeeeCcc
Q psy15557 134 LYPYFTLLGQSIGSMILGVEA--LLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPT 192 (207)
Q Consensus 134 ~yp~fTLLgQslGSi~L~~EA--l~~~~PDVfIDTmGyaFtyPl~k~l~g~~V~~YvHYPt 192 (207)
.+.++..+.+.+......+-. ..+..|||.+-.. .+...|+.+...+.+++.|+|+|-
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~-~~~~~~~~~~~~~~~~i~~~h~~~ 126 (392)
T cd03805 67 IFGRFHILCAYLRMLYLALYLLLLPDEKYDVFIVDQ-VSACVPLLKLFSPSKILFYCHFPD 126 (392)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHhcccCCCCEEEEcC-cchHHHHHHHhcCCcEEEEEecCh
Confidence 566666666666655555433 4556899987443 445567777666689999999984
No 5
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.83 E-value=2.6e-05 Score=67.01 Aligned_cols=112 Identities=20% Similarity=0.266 Sum_probs=57.8
Q ss_pred EEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCC
Q psy15557 55 VAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASL 134 (207)
Q Consensus 55 VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~ 134 (207)
||++||+++..||||||+-...+.+.+ +.+..-..|.+.. +..... +++....+.+......
T Consensus 2 i~~~~~~~~~~GG~E~~~~~l~~~l~~----~~v~~~~~~~~~~-~~~~~~-----------~~~~~~~~~~~~~~~~-- 63 (351)
T cd03804 2 VAIVHDWLVNIGGGEKVVEALARLFPD----ADIFTLVDDPDKL-PRLLRL-----------KKIRTSFIQKLPFARR-- 63 (351)
T ss_pred EEEEEeccccCCCHHHHHHHHHHhCCC----CCEEEEeecCCcc-chhhcC-----------CceeechhhhchhhHh--
Confidence 899999999999999998877776543 3332222221111 111110 1111222211111000
Q ss_pred CCchhhhhHHHHHHHHHHHHHhcCCCCEEEECCCccchHHHHHHhCCCeeEEeeeCc
Q psy15557 135 YPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYP 191 (207)
Q Consensus 135 yp~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyPl~k~l~g~~V~~YvHYP 191 (207)
++..+... +-..++.+....+|+.+.+....+. .+. ...+.+.+.|+|-|
T Consensus 64 --~~~~~~~~---~~~~~~~~~~~~~D~v~~~~~~~~~-~~~-~~~~~~~~~~~h~~ 113 (351)
T cd03804 64 --RYRKYLPL---MPLAIEQFDLSGYDLVISSSHAVAK-GVI-TRPDQLHICYCHTP 113 (351)
T ss_pred --hHhhhCch---hhHHHHhccccCCCEEEEcCcHHhc-ccc-CCCCCcEEEEeCCc
Confidence 11111111 1124556667789999988753333 222 24578999999987
No 6
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=97.54 E-value=0.00096 Score=50.14 Aligned_cols=112 Identities=21% Similarity=0.212 Sum_probs=64.1
Q ss_pred EEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCC
Q psy15557 56 AFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLY 135 (207)
Q Consensus 56 gFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~y 135 (207)
.+.|-+....||+||+++.-++++.++ ++++.+++...+...+ ++ .... .+. ..+
T Consensus 2 li~~~~~~~~GG~e~~~~~l~~~l~~~--G~~v~v~~~~~~~~~~---~~-----~~~~------~~~---------~~~ 56 (177)
T PF13439_consen 2 LITNIFLPNIGGAERVVLNLARALAKR--GHEVTVVSPGVKDPIE---EE-----LVKI------FVK---------IPY 56 (177)
T ss_dssp EEECC-TTSSSHHHHHHHHHHHHHHHT--T-EEEEEESS-TTS-S---ST-----EEEE------------------TT-
T ss_pred EEEEecCCCCChHHHHHHHHHHHHHHC--CCEEEEEEcCCCccch---hh-----ccce------eee---------eec
Confidence 455666777899999999999999997 8888888765321111 00 0000 011 111
Q ss_pred CchhhhhHHHHHHHHHHHHHhcCCCCEEEECCC-ccchHHHHHHhCCCeeEEeeeCcccc
Q psy15557 136 PYFTLLGQSIGSMILGVEALLSFQPDIYIDTMG-YAFTYPLFSYIGGSKVACYIHYPTIT 194 (207)
Q Consensus 136 p~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmG-yaFtyPl~k~l~g~~V~~YvHYPtIS 194 (207)
+......+.+.......+.+.+..|||. -+.+ .++.....+.. +.|++..+|-+...
T Consensus 57 ~~~~~~~~~~~~~~~~~~~i~~~~~DiV-h~~~~~~~~~~~~~~~-~~~~v~~~H~~~~~ 114 (177)
T PF13439_consen 57 PIRKRFLRSFFFMRRLRRLIKKEKPDIV-HIHGPPAFWIALLACR-KVPIVYTIHGPYFE 114 (177)
T ss_dssp SSTSS--HHHHHHHHHHHHHHHHT-SEE-ECCTTHCCCHHHHHHH-CSCEEEEE-HHH--
T ss_pred ccccccchhHHHHHHHHHHHHHcCCCeE-EecccchhHHHHHhcc-CCCEEEEeCCCccc
Confidence 1112234556666677778888899998 3333 33444444444 99999999998853
No 7
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.77 E-value=0.014 Score=45.02 Aligned_cols=86 Identities=20% Similarity=0.205 Sum_probs=62.3
Q ss_pred EEccCCCC-CCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCC
Q psy15557 57 FFHPYCNA-GGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLY 135 (207)
Q Consensus 57 FFHPycna-GGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~y 135 (207)
+.+++-.. +||.+++.+.-.+++.++ ++.+.+++
T Consensus 3 ~i~~~~~~~~~G~~~~~~~l~~~L~~~--g~~v~v~~------------------------------------------- 37 (229)
T cd01635 3 LVSTPLLPGGGGVELVLLDLAKALARR--GHEVEVVA------------------------------------------- 37 (229)
T ss_pred eeccccCCCCCCchhHHHHHHHHHHHc--CCeEEEEE-------------------------------------------
Confidence 34444444 889999999999999886 56666666
Q ss_pred CchhhhhHHHHHHHHHHHHHhcCCCCEEEECCCccchHHH--HHHhCCCeeEEeeeCccccccc
Q psy15557 136 PYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPL--FSYIGGSKVACYIHYPTITKAQ 197 (207)
Q Consensus 136 p~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyPl--~k~l~g~~V~~YvHYPtIStDM 197 (207)
.......+.+.+..||+.+-..+++..++. .+...+++++..+|.+..+..+
T Consensus 38 ----------~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~ 91 (229)
T cd01635 38 ----------LLLLLLLRILRGFKPDVVHAHGYYPAPLALLLAARLLGIPLVLTVHGVNRSLLE 91 (229)
T ss_pred ----------echHHHHHHHhhcCCCEEEEcCCCcHHHHHHHHHhhCCCCEEEEEcCccHhhcc
Confidence 111122344456789999999988888873 4556789999999999887654
No 8
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=96.59 E-value=0.016 Score=46.76 Aligned_cols=37 Identities=30% Similarity=0.530 Sum_probs=29.7
Q ss_pred EEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 55 VAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 55 VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
|.+++++.. +||+||+.+.-+++++++ ++.+.+++.+
T Consensus 2 Il~~~~~~~-~gG~~~~~~~l~~~l~~~--g~~v~v~~~~ 38 (353)
T cd03811 2 ILFVIPSLG-GGGAERVLLNLANGLDKR--GYDVTLVVLR 38 (353)
T ss_pred eEEEeeccc-CCCcchhHHHHHHHHHhc--CceEEEEEcC
Confidence 678888877 779999999999999766 5666666654
No 9
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=96.53 E-value=0.015 Score=48.27 Aligned_cols=108 Identities=17% Similarity=0.043 Sum_probs=61.4
Q ss_pred EEEEccCCC--CCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeC
Q psy15557 55 VAFFHPYCN--AGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEA 132 (207)
Q Consensus 55 VgFFHPycn--aGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~ 132 (207)
|.+...+-. .+||.||+++.-++++++...++.+++...+.+...+ ..... . .. .
T Consensus 2 ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~----~~~~~----~-------~~--------~ 58 (365)
T cd03809 2 ILIDARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLL----PLRAA----L-------RL--------L 58 (365)
T ss_pred EEEechhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccc----cchhc----c-------cc--------c
Confidence 334444443 5889999999999999997555555555544221111 00000 0 00 1
Q ss_pred CCCCchhhhhHHHHHHHHHHHHHhcCCCCEEEECCCccchHHHHHHhCCCeeEEeee
Q psy15557 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIH 189 (207)
Q Consensus 133 ~~yp~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyPl~k~l~g~~V~~YvH 189 (207)
...+....................+..||+.+-+...++.. + ..+.|++..+|
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~---~-~~~~~~i~~~h 111 (365)
T cd03809 59 LRLPRRLLWGLLFLLRAGDRLLLLLLGLDLLHSPHNTAPLL---R-LRGVPVVVTIH 111 (365)
T ss_pred cccccccccchhhHHHHHHHHHhhhcCCCeeeecccccCcc---c-CCCCCEEEEec
Confidence 11111122223333333344455668899999888776665 3 56899999999
No 10
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=96.13 E-value=0.16 Score=41.50 Aligned_cols=111 Identities=19% Similarity=0.172 Sum_probs=61.6
Q ss_pred EEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCC
Q psy15557 55 VAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASL 134 (207)
Q Consensus 55 VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~ 134 (207)
|.+.+|.-+. ||+|++++.-++++.+. ++.+.+++.+.+ +...+..++ .| +++..+.....
T Consensus 2 i~~i~~~~~~-gG~~~~~~~l~~~l~~~--~~~v~~~~~~~~---~~~~~~~~~-~~-------i~v~~~~~~~~----- 62 (365)
T cd03807 2 VLHVITGLDV-GGAERMLVRLLKGLDRD--RFEHVVISLTDR---GELGEELEE-AG-------VPVYCLGKRPG----- 62 (365)
T ss_pred eEEEEeeccC-ccHHHHHHHHHHHhhhc--cceEEEEecCcc---hhhhHHHHh-cC-------CeEEEEecccc-----
Confidence 6677777777 68999999999999765 455555544322 222222222 22 33333332211
Q ss_pred CCchhhhhHHHHHHHHHHHHHhcCCCCEEEECCCccchHH-HHHHh-CCCeeEEeeeCc
Q psy15557 135 YPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP-LFSYI-GGSKVACYIHYP 191 (207)
Q Consensus 135 yp~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyP-l~k~l-~g~~V~~YvHYP 191 (207)
++.+ ..+....+.+.+..||+.+.....+..+. +.+.. .+.+++..+|--
T Consensus 63 ~~~~-------~~~~~~~~~~~~~~~div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 114 (365)
T cd03807 63 RPDP-------GALLRLYKLIRRLRPDVVHTWMYHADLYGGLAARLAGVPPVIWGIRHS 114 (365)
T ss_pred cccH-------HHHHHHHHHHHhhCCCEEEeccccccHHHHHHHHhcCCCcEEEEecCC
Confidence 1111 12233456677889999887654433332 33344 678888777753
No 11
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=96.11 E-value=0.052 Score=48.29 Aligned_cols=102 Identities=17% Similarity=0.182 Sum_probs=65.6
Q ss_pred HHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhHHHHHHHHHHHH
Q psy15557 75 AVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEA 154 (207)
Q Consensus 75 Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslGSi~L~~EA 154 (207)
-.++|.++ ++.+.+.|.+.+..... .++.++++..+--+.+.++.....-..+..-.-..++
T Consensus 16 la~~L~~~--G~~v~~~~~~~~~~~~~----------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (396)
T cd03818 16 LAPALAAQ--GHEVVFLTEPNAAPPPG----------------GVRVVRYRPPRGPTSGTHPYLREFEEAVLRGQAVARA 77 (396)
T ss_pred HHHHHHHC--CCEEEEEecCCCCCCCC----------------CeeEEEecCCCCCCCCCCccchhHHHHHHHHHHHHHH
Confidence 45667666 89999998874322110 2444544433222335666666665554322222222
Q ss_pred ---H--hcCCCCEEEECCCccchHHHHHHhCCCeeEEeeeCcccc
Q psy15557 155 ---L--LSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTIT 194 (207)
Q Consensus 155 ---l--~~~~PDVfIDTmGyaFtyPl~k~l~g~~V~~YvHYPtIS 194 (207)
+ ..+.|||.+...|+++++.+.+.+.++++++|+||+...
T Consensus 78 ~~~~~~~~~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~~~~~~~ 122 (396)
T cd03818 78 LLALRAKGFRPDVIVAHPGWGETLFLKDVWPDAPLIGYFEFYYRA 122 (396)
T ss_pred HHHHHhcCCCCCEEEECCccchhhhHHHhCCCCCEEEEEeeeecC
Confidence 2 446899999999999999998888899999999987644
No 12
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=95.87 E-value=0.09 Score=42.34 Aligned_cols=118 Identities=15% Similarity=0.026 Sum_probs=69.1
Q ss_pred EEEEccCCCC-CCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCC
Q psy15557 55 VAFFHPYCNA-GGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEAS 133 (207)
Q Consensus 55 VgFFHPycna-GGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~ 133 (207)
|.+++++... +||++.....-++++++. ++++.+++.+.+...... . ......... .
T Consensus 2 I~ii~~~~~~~~~G~~~~~~~l~~~L~~~--g~~v~i~~~~~~~~~~~~-----~----~~~~~~~~~-----------~ 59 (374)
T cd03801 2 ILLVTPEYPPSVGGAERHVLELARALAAR--GHEVTVLTPGDGGLPDEE-----E----VGGIVVVRP-----------P 59 (374)
T ss_pred eeEEecccCCccCcHhHHHHHHHHHHHhc--CceEEEEecCCCCCCcee-----e----ecCcceecC-----------C
Confidence 4444444433 589999999999999875 778888877633221100 0 000000000 1
Q ss_pred CCCchhhhhHHHHHHHHHHHHHhcCCCCEEEECCCccchHH-HHHHhCCCeeEEeeeCcccc
Q psy15557 134 LYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP-LFSYIGGSKVACYIHYPTIT 194 (207)
Q Consensus 134 ~yp~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyP-l~k~l~g~~V~~YvHYPtIS 194 (207)
.+.................+.+.+..||+.+-........+ ..+...+++++..+|-+...
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~ 121 (374)
T cd03801 60 PLLRVRRLLLLLLLALRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFG 121 (374)
T ss_pred cccccchhHHHHHHHHHHHHHhhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhh
Confidence 11122223333444444556677789999998887766665 34456689999999987643
No 13
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=95.84 E-value=0.056 Score=44.49 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=28.5
Q ss_pred EEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 54 TVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 54 ~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
.++.+||. .++||+|++++.-+++++++ ++++.+++.+
T Consensus 4 ~i~~~~~~-~~~gG~~~~~~~l~~~L~~~--g~~v~v~~~~ 41 (359)
T cd03823 4 VVNHLYPP-RSVGGAEVVAHDLAEALAKR--GHEVAVLTAG 41 (359)
T ss_pred EEcccCCc-ccccchHHHHHHHHHHHHhc--CCceEEEeCC
Confidence 34445554 44679999999999999976 6777777765
No 14
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=95.79 E-value=0.031 Score=46.41 Aligned_cols=107 Identities=16% Similarity=0.086 Sum_probs=62.6
Q ss_pred EEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCC
Q psy15557 55 VAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASL 134 (207)
Q Consensus 55 VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~ 134 (207)
|+|..|+-+.+||.|++.+.-++++.++ ++.+.+++.+...... . ..+.....+.....
T Consensus 2 I~~v~~~~~~~gG~~~~~~~l~~~L~~~--g~~v~v~~~~~~~~~~-------~----~~~~~~~~~~~~~~-------- 60 (366)
T cd03822 2 IALVSPYPPRKCGIATFTTDLVNALSAR--GPDVLVVSVAALYPSL-------L----YGGEQEVVRVIVLD-------- 60 (366)
T ss_pred eEEecCCCCCCCcHHHHHHHHHHHhhhc--CCeEEEEEeecccCcc-------c----CCCcccceeeeecC--------
Confidence 7899999887899999999999999987 5566666544211100 0 00000000111000
Q ss_pred CCchhhhhHHHHHHHHHHHHHhcCCCCEEEECCCccchHH----HHHHh---CCCeeEEeeeCc
Q psy15557 135 YPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP----LFSYI---GGSKVACYIHYP 191 (207)
Q Consensus 135 yp~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyP----l~k~l---~g~~V~~YvHYP 191 (207)
-.. ......+.+.+..||+.+-+..+++.-| ..+.. .+.|++..+|-+
T Consensus 61 -~~~--------~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~ 115 (366)
T cd03822 61 -NPL--------DYRRAARAIRLSGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTV 115 (366)
T ss_pred -Cch--------hHHHHHHHHhhcCCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecC
Confidence 001 1123456678889999997764443322 22222 588999999997
No 15
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=95.62 E-value=0.17 Score=40.96 Aligned_cols=117 Identities=21% Similarity=0.163 Sum_probs=67.1
Q ss_pred EEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCC
Q psy15557 55 VAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASL 134 (207)
Q Consensus 55 VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~ 134 (207)
|++..|.-...||+||+.-.-+++++++ ++.+.+++.+.+. ...+ +++ +.++...+.....-
T Consensus 2 I~i~~~~~~~~gG~~~~~~~l~~~L~~~--g~~v~v~~~~~~~---------~~~~--~~~-~~~~~~~~~~~~~~---- 63 (348)
T cd03820 2 ILFVIPSLGNAGGAERVLSNLANALAEK--GHEVTIISLDKGE---------PPFY--ELD-PKIKVIDLGDKRDS---- 63 (348)
T ss_pred eEEEeccccCCCChHHHHHHHHHHHHhC--CCeEEEEecCCCC---------CCcc--ccC-Cccceeeccccccc----
Confidence 6778887776889999999999999875 6777777765321 0111 122 33333333321100
Q ss_pred CCchhhhhHHHHHHHHHHHHHhcCCCCEEEECCCccchHHHHHHhCC-CeeEEeeeCccccc
Q psy15557 135 YPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGG-SKVACYIHYPTITK 195 (207)
Q Consensus 135 yp~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyPl~k~l~g-~~V~~YvHYPtISt 195 (207)
+ ....+-.+....+.+.+..||+.+-..+....+.- ....+ ++++.+.|......
T Consensus 64 --~---~~~~~~~~~~~~~~l~~~~~d~i~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~ 119 (348)
T cd03820 64 --K---LLARFKKLRRLRKLLKNNKPDVVISFLTSLLTFLA-SLGLKIVKLIVSEHNSPDAY 119 (348)
T ss_pred --c---hhccccchHHHHHhhcccCCCEEEEcCchHHHHHH-HHhhccccEEEecCCCccch
Confidence 0 00011112233445666899999999877223222 22334 49999999765443
No 16
>KOG0853|consensus
Probab=95.12 E-value=0.027 Score=54.85 Aligned_cols=133 Identities=20% Similarity=0.249 Sum_probs=73.7
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHh-------hCCCceEEEEcCCCCCChhHHHHHHHH-hcceeecCCceEEEEc
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQ-------KYPDYKIYIYTGDVDASPSEIIKRAHQ-RFNIVLPEQAINFVYL 124 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~-------~~~~~~~vIYTgd~~~~~~~il~~a~~-rF~i~L~~~~i~FV~L 124 (207)
..+.|-||+-..| |.||---.|..++|. .+-+.+++++|...++...+++-+..+ ..+++.+ ..+. -+.
T Consensus 35 ~~~~~~~~~~~~g-g~er~~v~~~~~l~s~~~~lg~~d~G~qV~~l~~h~~al~~~~~~~~~~~~l~~~~~-i~vv-~~~ 111 (495)
T KOG0853|consen 35 EHVTFIHPDLGIG-GAERLVVDAAVHLLSGQDVLGLPDTGGQVVYLTSHEDALEMPLLLRCFAETLDGTPP-ILVV-GDW 111 (495)
T ss_pred hhheeeccccccC-chHHHhHHHHHHHHhcccccCCCCCCceEEEEehhhhhhcchHHHHHHHHHhcCCCc-eEEE-Eee
Confidence 4599999999877 889988898888888 223889999999865543444444432 1123222 1111 111
Q ss_pred CccceeeCCCCCchhhhhHHHHHHHHHHHHHhc--CCCCEEEECCCccchHHHHHHhCC----CeeEEeeeCcc
Q psy15557 125 YRRKFVEASLYPYFTLLGQSIGSMILGVEALLS--FQPDIYIDTMGYAFTYPLFSYIGG----SKVACYIHYPT 192 (207)
Q Consensus 125 r~r~lve~~~yp~fTLLgQslGSi~L~~EAl~~--~~PDVfIDTmGyaFtyPl~k~l~g----~~V~~YvHYPt 192 (207)
-.|..- .+-+....+.-+--+...++.+.+ ..-|++|.+. -.-+-|+.+++.+ +++.+|+|+|.
T Consensus 112 lP~~~~---~~~~~~~~~~~~~il~~~~~~~~k~~~~~d~~i~d~-~~~~~~l~~~~~~p~~~~~i~~~~h~~~ 181 (495)
T KOG0853|consen 112 LPRAMG---QFLEQVAGCAYLRILRIPFGILFKWAEKVDPIIEDF-VSACVPLLKQLSGPDVIIKIYFYCHFPD 181 (495)
T ss_pred cCcccc---hhhhhhhccceeEEEEeccchhhhhhhhhceeecch-HHHHHHHHHHhcCCcccceeEEeccchH
Confidence 111110 011111111111111111111111 2235555555 2889999999994 99999999995
No 17
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=95.04 E-value=0.26 Score=43.02 Aligned_cols=112 Identities=12% Similarity=0.129 Sum_probs=64.9
Q ss_pred CCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhHH
Q psy15557 65 GGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQS 144 (207)
Q Consensus 65 GGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQs 144 (207)
-||.|++...-+++++++ ++.+.+.+++. +.+ -+..++ ..+++..+........+...++-...+.
T Consensus 11 ~gG~~~~~~~la~~L~~~--g~ev~vv~~~~--~~~--~~~~~~--------~g~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (357)
T PRK00726 11 TGGHVFPALALAEELKKR--GWEVLYLGTAR--GME--ARLVPK--------AGIEFHFIPSGGLRRKGSLANLKAPFKL 76 (357)
T ss_pred chHhhhHHHHHHHHHHhC--CCEEEEEECCC--chh--hhcccc--------CCCcEEEEeccCcCCCChHHHHHHHHHH
Confidence 359999988999999987 67777777642 111 011111 1222222222111111111222234455
Q ss_pred HHHHHHHHHHHhcCCCCEEEECCCccchHH-HHHHhCCCeeEEeeeC
Q psy15557 145 IGSMILGVEALLSFQPDIYIDTMGYAFTYP-LFSYIGGSKVACYIHY 190 (207)
Q Consensus 145 lGSi~L~~EAl~~~~PDVfIDTmGyaFtyP-l~k~l~g~~V~~YvHY 190 (207)
+.++.-..+.+.+..|||.+-++.++.... +++.+.+.|++.++|-
T Consensus 77 ~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~ 123 (357)
T PRK00726 77 LKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN 123 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC
Confidence 666666677788889999999987754332 4456778999887773
No 18
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=95.03 E-value=0.24 Score=43.59 Aligned_cols=41 Identities=15% Similarity=0.325 Sum_probs=34.0
Q ss_pred EEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 54 TVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 54 ~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
.|.|+.++-+.-||.||++..-+++++++.-++.+.+.+.+
T Consensus 2 kI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~ 42 (359)
T PRK09922 2 KIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRN 42 (359)
T ss_pred eeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecC
Confidence 48888887766689999999999999997557888887765
No 19
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.96 E-value=0.54 Score=39.67 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=28.7
Q ss_pred EEEEcc--CCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 55 VAFFHP--YCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 55 VgFFHP--ycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
|++.++ +-..+||.|+.+..-.++++++ ++.+.|.+.+
T Consensus 2 i~~i~~~~~~~~~gG~~~~~~~la~~L~~~--g~~v~v~~~~ 41 (363)
T cd04955 2 IAIIGTRGIPAKYGGFETFVEELAPRLVAR--GHEVTVYCRS 41 (363)
T ss_pred eEEEecCcCCcccCcHHHHHHHHHHHHHhc--CCCEEEEEcc
Confidence 444544 3456789999999999999987 6777777765
No 20
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.77 E-value=0.38 Score=41.34 Aligned_cols=114 Identities=12% Similarity=0.139 Sum_probs=58.7
Q ss_pred CCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhh
Q psy15557 62 CNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLL 141 (207)
Q Consensus 62 cnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLL 141 (207)
++.+||.|++.-.-+++++++ ++.+.+.|++.... . +. .+.+.+++..+.....-....+.++.-.
T Consensus 6 ~~~~gG~~~~~~~la~~l~~~--G~ev~v~~~~~~~~-~---~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (350)
T cd03785 6 GGGTGGHIFPALALAEELRER--GAEVLFLGTKRGLE-A---RL--------VPKAGIPLHTIPVGGLRRKGSLKKLKAP 71 (350)
T ss_pred ecCchhhhhHHHHHHHHHHhC--CCEEEEEECCCcch-h---hc--------ccccCCceEEEEecCcCCCChHHHHHHH
Confidence 455678999988888999887 67777777752211 1 10 1111233333222111001111111111
Q ss_pred hHHHHHHHHHHHHHhcCCCCEEEECCCccchHH--HHHHhCCCeeEEeeeC
Q psy15557 142 GQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP--LFSYIGGSKVACYIHY 190 (207)
Q Consensus 142 gQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyP--l~k~l~g~~V~~YvHY 190 (207)
.+.+-.+.-..+.+.+..||+.+-+++.+ +.+ ++....|.|++.|.|-
T Consensus 72 ~~~~~~~~~~~~~i~~~~pDvI~~~~~~~-~~~~~~~a~~~~~p~v~~~~~ 121 (350)
T cd03785 72 FKLLKGVLQARKILKKFKPDVVVGFGGYV-SGPVGLAAKLLGIPLVIHEQN 121 (350)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEECCCCc-chHHHHHHHHhCCCEEEEcCC
Confidence 11122222223446778999999887655 333 3345568888877664
No 21
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=94.69 E-value=0.39 Score=40.17 Aligned_cols=105 Identities=15% Similarity=0.046 Sum_probs=61.2
Q ss_pred CCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhh
Q psy15557 63 NAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLG 142 (207)
Q Consensus 63 naGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLg 142 (207)
..+||.||.+..-++++.++ ++.+.+++.+.+.+..+. .... ......+. ...-.
T Consensus 16 ~~~GG~~~~~~~l~~~L~~~--g~~V~v~~~~~~~~~~~~---------~~~~---------~~~~~~~~-----~~~~~ 70 (335)
T cd03802 16 PAYGGTERVVAALTEGLVAR--GHEVTLFASGDSKTAAPL---------VPVV---------PEPLRLDA-----PGRDR 70 (335)
T ss_pred cccCcHHHHHHHHHHHHHhc--CceEEEEecCCCCcccce---------eecc---------CCCccccc-----chhhH
Confidence 46779999999999999887 788888886533221110 0000 00000000 01111
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCccchHHHHHHhCCCeeEEeeeCcccc
Q psy15557 143 QSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTIT 194 (207)
Q Consensus 143 QslGSi~L~~EAl~~~~PDVfIDTmGyaFtyPl~k~l~g~~V~~YvHYPtIS 194 (207)
..........+.+.+..|||..--...+..+ . +...+.|++.-+|-+...
T Consensus 71 ~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~-~-~~~~~~~~v~~~h~~~~~ 120 (335)
T cd03802 71 AEAEALALAERALAAGDFDIVHNHSLHLPLP-F-ARPLPVPVVTTLHGPPDP 120 (335)
T ss_pred hhHHHHHHHHHHHhcCCCCEEEecCcccchh-h-hcccCCCEEEEecCCCCc
Confidence 2233344455677888999987655444444 3 335688999999977543
No 22
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=94.22 E-value=1 Score=38.00 Aligned_cols=105 Identities=11% Similarity=-0.023 Sum_probs=59.1
Q ss_pred ccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCch
Q psy15557 59 HPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYF 138 (207)
Q Consensus 59 HPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~f 138 (207)
.|..+. ||.|+++....++++++ ++++.+++.+.. ..+..++ -+++. +.+.... .. .+
T Consensus 4 ~~~~~~-gG~e~~~~~l~~~L~~~--g~~v~v~~~~~~-----~~~~~~~-~~~~~-------~~~~~~~----~~--~~ 61 (355)
T cd03819 4 LPALES-GGVERGTLELARALVER--GHRSLVASAGGR-----LVAELEA-EGSRH-------IKLPFIS----KN--PL 61 (355)
T ss_pred chhhcc-CcHHHHHHHHHHHHHHc--CCEEEEEcCCCc-----hHHHHHh-cCCeE-------EEccccc----cc--hh
Confidence 466665 69999999999999987 788888876521 1122211 12221 2211110 00 01
Q ss_pred hhhhHHHHHHHHHHHHHhcCCCCEEEECCCccchHH-HHHHhCCCeeEEeee
Q psy15557 139 TLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP-LFSYIGGSKVACYIH 189 (207)
Q Consensus 139 TLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyP-l~k~l~g~~V~~YvH 189 (207)
..+....--...+.+..||+.+-...++.-.. +.....+.|++...|
T Consensus 62 ----~~~~~~~~l~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h 109 (355)
T cd03819 62 ----RILLNVARLRRLIREEKVDIVHARSRAPAWSAYLAARRTRPPFVTTVH 109 (355)
T ss_pred ----hhHHHHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHhcCCCEEEEeC
Confidence 11222333355577889999887654432222 222345889999898
No 23
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=94.13 E-value=0.81 Score=40.87 Aligned_cols=112 Identities=21% Similarity=0.201 Sum_probs=60.7
Q ss_pred EEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCC
Q psy15557 56 AFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLY 135 (207)
Q Consensus 56 gFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~y 135 (207)
.|+||. .||.||....-++++.++ ++.++|+|.+.+... +.+...+.+...++....+......
T Consensus 7 ~~~~p~---~GG~e~~~~~la~~L~~~--G~~V~v~~~~~~~~~-----------~~~~~~~~i~v~~~p~~~~~~~~~~ 70 (398)
T cd03796 7 DFFYPN---LGGVETHIYQLSQCLIKR--GHKVVVITHAYGNRV-----------GIRYLTNGLKVYYLPFVVFYNQSTL 70 (398)
T ss_pred eccccc---cccHHHHHHHHHHHHHHc--CCeeEEEeccCCcCC-----------CcccccCceeEEEecceeccCCccc
Confidence 467884 579999999999999987 889999997532110 0011112233333322222222222
Q ss_pred CchhhhhHHHHHHHHHHHHHhcCCCCEEEECCCccchHHHH---HHhCCCeeEEeee
Q psy15557 136 PYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLF---SYIGGSKVACYIH 189 (207)
Q Consensus 136 p~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyPl~---k~l~g~~V~~YvH 189 (207)
+++ ..++......+.+..|||.-=...++...+.. ....+.|++.=.|
T Consensus 71 ~~~------~~~~~~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~h 121 (398)
T cd03796 71 PTF------FGTFPLLRNILIRERITIVHGHQAFSALAHEALLHARTMGLKTVFTDH 121 (398)
T ss_pred cch------hhhHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEEec
Confidence 211 22222333445678899987666555433322 2234677776666
No 24
>PRK10307 putative glycosyl transferase; Provisional
Probab=93.52 E-value=0.39 Score=42.90 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=24.7
Q ss_pred EEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 57 FFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 57 FFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
.|+|. .| |.|+....-+++|+++ ++++.|.|+.
T Consensus 9 ~~~P~--~~-g~~~~~~~l~~~L~~~--G~~V~vit~~ 41 (412)
T PRK10307 9 NYAPE--LT-GIGKYTGEMAEWLAAR--GHEVRVITAP 41 (412)
T ss_pred CCCCC--cc-chhhhHHHHHHHHHHC--CCeEEEEecC
Confidence 45676 34 5556667888999986 8999999875
No 25
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=93.42 E-value=0.93 Score=37.17 Aligned_cols=38 Identities=24% Similarity=0.236 Sum_probs=29.1
Q ss_pred EEEEccCC-CCCCcchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 55 VAFFHPYC-NAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 55 VgFFHPyc-naGGGGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
|.+..|+. +.+||+|++.....+++++. ++.+.++|.+
T Consensus 2 Il~i~~~~~~~~gG~~~~~~~l~~~L~~~--g~~v~v~~~~ 40 (375)
T cd03821 2 ILHVIPSFDPKYGGPVRVVLNLSKALAKL--GHEVTVATTD 40 (375)
T ss_pred eEEEcCCCCcccCCeehHHHHHHHHHHhc--CCcEEEEecC
Confidence 44555554 57889999999999999876 7777777765
No 26
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=93.41 E-value=1.4 Score=36.10 Aligned_cols=115 Identities=15% Similarity=0.171 Sum_probs=57.6
Q ss_pred CCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhh
Q psy15557 62 CNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLL 141 (207)
Q Consensus 62 cnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLL 141 (207)
-..+||+|+....-+++++++ ++++.+.+.+........... +..+.. +.+++..+.....-.. ..+
T Consensus 10 ~~~~~G~~~~~~~l~~~L~~~--g~~v~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~------~~~ 76 (394)
T cd03794 10 PPELGGGAFRTTELAEELVKR--GHEVTVITGSPNYPSGKIYKG----YKREEV-DGVRVHRVPLPPYKKN------GLL 76 (394)
T ss_pred CCccCCcceeHHHHHHHHHhC--CceEEEEecCCCccccccccc----ceEEec-CCeEEEEEecCCCCcc------chH
Confidence 334478899999999999987 777777776533222211111 111222 3455544433221111 111
Q ss_pred hHHHHHH---HHHHHHH--hcCCCCEEEECC-CccchHHHH--HHhCCCeeEEeee
Q psy15557 142 GQSIGSM---ILGVEAL--LSFQPDIYIDTM-GYAFTYPLF--SYIGGSKVACYIH 189 (207)
Q Consensus 142 gQslGSi---~L~~EAl--~~~~PDVfIDTm-GyaFtyPl~--k~l~g~~V~~YvH 189 (207)
...+... ......+ .+..||+.+-.. .....++.. +...+.|++.++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h 132 (394)
T cd03794 77 KRLLNYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLARLKGAPFVLEVR 132 (394)
T ss_pred HHHHhhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEeh
Confidence 1111111 1122223 367899888776 233333332 2223789999998
No 27
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=93.28 E-value=2.3 Score=35.90 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=30.0
Q ss_pred EEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 55 VAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 55 VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
|.++||+- .+||.|+.+..-.+++.++ ++.+.+++.+
T Consensus 2 Il~~~~~~-~~GG~~~~~~~l~~~L~~~--~~~v~~i~~~ 38 (358)
T cd03812 2 ILHIVGTM-NRGGIETFIMNYYRNLDRS--KIQFDFLVTS 38 (358)
T ss_pred EEEEeCCC-CCccHHHHHHHHHHhcCcc--ceEEEEEEeC
Confidence 67888888 5679999999999999754 6777777765
No 28
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=92.86 E-value=2.2 Score=36.42 Aligned_cols=29 Identities=21% Similarity=0.150 Sum_probs=24.2
Q ss_pred CCCcchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 64 AGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 64 aGGGGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
..||.||+.=.-.++++++ ++.+.|+|++
T Consensus 10 ~~gG~~~~~~~la~~L~~~--G~~v~v~~~~ 38 (371)
T cd04962 10 TYGGSGVVATELGKALARR--GHEVHFITSS 38 (371)
T ss_pred CCCCccchHHHHHHHHHhc--CCceEEEecC
Confidence 4579999999999999887 6778888876
No 29
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=92.64 E-value=1.5 Score=36.13 Aligned_cols=107 Identities=16% Similarity=0.176 Sum_probs=56.2
Q ss_pred CCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhh
Q psy15557 62 CNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLL 141 (207)
Q Consensus 62 cnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLL 141 (207)
-..+||+++..+.-+++++++ ++.+.++|......... ... .... .... ....++++...
T Consensus 10 ~p~~~G~~~~~~~l~~~L~~~--g~~v~v~~~~~~~~~~~------~~~-~~~~--~~~~---------~~~~~~~~~~~ 69 (374)
T cd03817 10 LPQVNGVATSIRRLAEELEKR--GHEVYVVAPSYPGAPEE------EEV-VVVR--PFRV---------PTFKYPDFRLP 69 (374)
T ss_pred cCCCCCeehHHHHHHHHHHHc--CCeEEEEeCCCCCCCcc------ccc-cccc--cccc---------ccchhhhhhcc
Confidence 345778999999999999987 67777776542211110 000 0000 0000 00112222211
Q ss_pred hHHHHHHHHHHHHHhcCCCCEEEECCCccchHHHHH--HhCCCeeEEeeeCc
Q psy15557 142 GQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFS--YIGGSKVACYIHYP 191 (207)
Q Consensus 142 gQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyPl~k--~l~g~~V~~YvHYP 191 (207)
.+......+.+.+..||+.+-...+...++..+ ...+++++...|.+
T Consensus 70 ---~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (374)
T cd03817 70 ---LPIPRALIIILKELGPDIVHTHTPFSLGLLGLRVARKLGIPVVATYHTM 118 (374)
T ss_pred ---ccHHHHHHHHHhhcCCCEEEECCchhhhhHHHHHHHHcCCCEEEEecCC
Confidence 122222334577889999887665444333222 23478999988865
No 30
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=92.58 E-value=1.8 Score=35.22 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=23.8
Q ss_pred CCcchhHHHHHHHHHHhhCCCceEEEEcCCC
Q psy15557 65 GGGGERVLWTAVLALHQKYPDYKIYIYTGDV 95 (207)
Q Consensus 65 GGGGERVLW~Ai~alq~~~~~~~~vIYTgd~ 95 (207)
+||+++.+...++++++. ++++.+++.+.
T Consensus 13 ~~g~~~~~~~~~~~l~~~--g~~v~v~~~~~ 41 (377)
T cd03798 13 NGGGGIFVKELARALAKR--GVEVTVLAPGP 41 (377)
T ss_pred CchHHHHHHHHHHHHHHC--CCceEEEecCC
Confidence 679999999999999976 77787777653
No 31
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=92.45 E-value=0.71 Score=38.84 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=29.7
Q ss_pred EEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 55 VAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 55 VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
|.+++++ ..+||.||+.....+++.++ ++.+.+++.+
T Consensus 3 Il~~~~~-~~~gG~~~~~~~l~~~l~~~--G~~v~v~~~~ 39 (365)
T cd03825 3 VLHLNTS-DISGGAARAAYRLHRALQAA--GVDSTMLVQE 39 (365)
T ss_pred EEEEecC-CCCCcHHHHHHHHHHHHHhc--CCceeEEEee
Confidence 7778776 44469999999999999887 6777777766
No 32
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=91.78 E-value=5.5 Score=32.34 Aligned_cols=109 Identities=16% Similarity=0.133 Sum_probs=58.3
Q ss_pred EEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCC
Q psy15557 55 VAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASL 134 (207)
Q Consensus 55 VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~ 134 (207)
|.+..++ +||+|+..+..+++++++ ++++.+++.+.+... . .+...++...+....- ..+
T Consensus 2 Il~i~~~---~~g~~~~~~~l~~~L~~~--g~~v~~~~~~~~~~~-----~--------~~~~~~~~~~~~~~~~-~~~- 61 (359)
T cd03808 2 ILHIVTV---DGGLYSFRLPLIKALRAA--GYEVHVVAPPGDELE-----E--------LEALGVKVIPIPLDRR-GIN- 61 (359)
T ss_pred eeEEEec---chhHHHHHHHHHHHHHhc--CCeeEEEecCCCccc-----c--------cccCCceEEecccccc-ccC-
Confidence 4555555 679999999999999776 788888887733221 1 1112333333322110 000
Q ss_pred CCchhhhhHHHHHHHHHHHHHhcCCCCEEEECCCccchHH-HHHH-hCCCeeEEeee
Q psy15557 135 YPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP-LFSY-IGGSKVACYIH 189 (207)
Q Consensus 135 yp~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyP-l~k~-l~g~~V~~YvH 189 (207)
+ .+.+....-..+.+.+..||+.+-..-.+..+. +.+. ..+.+++...|
T Consensus 62 -~-----~~~~~~~~~~~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 112 (359)
T cd03808 62 -P-----FKDLKALLRLYRLLRKERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVH 112 (359)
T ss_pred -h-----HhHHHHHHHHHHHHHhcCCCEEEEccccchhHHHHHHHHcCCCCEEEEec
Confidence 0 112223334456678889998765543333333 2233 34555555544
No 33
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=91.48 E-value=3.5 Score=35.85 Aligned_cols=28 Identities=18% Similarity=0.110 Sum_probs=22.2
Q ss_pred EEEEEccCCCCCCcchhHHHHHHHHHHhh
Q psy15557 54 TVAFFHPYCNAGGGGERVLWTAVLALHQK 82 (207)
Q Consensus 54 ~VgFFHPycnaGGGGERVLW~Ai~alq~~ 82 (207)
.|.+..+.-+. ||.||++..-++++.++
T Consensus 3 ~il~ii~~~~~-GG~e~~~~~l~~~l~~~ 30 (374)
T TIGR03088 3 LIVHVVYRFDV-GGLENGLVNLINHLPAD 30 (374)
T ss_pred eEEEEeCCCCC-CcHHHHHHHHHhhcccc
Confidence 46666777765 58999999999998775
No 34
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=91.34 E-value=2.6 Score=35.17 Aligned_cols=61 Identities=23% Similarity=0.334 Sum_probs=38.7
Q ss_pred EEEcCccceeeCCCCCchhhhhHHHHHHHHHHHHHhcCCCCEEEECCCccchHHHH--HHhC------CCeeE
Q psy15557 121 FVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLF--SYIG------GSKVA 185 (207)
Q Consensus 121 FV~Lr~r~lve~~~yp~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyPl~--k~l~------g~~V~ 185 (207)
+....+-+.+..+ .+|-+.-.+.+.+.++-.+.+..||+.|- +|=+-++|+. -.+. |+||+
T Consensus 57 ~~~~~r~r~v~q~---~~~~~~~~l~~~~~~~~il~r~rPdvii~-nGpg~~vp~~~~~~l~~~~~~~~~kiI 125 (170)
T PF08660_consen 57 ILEIPRAREVGQS---YLTSIFTTLRAFLQSLRILRRERPDVIIS-NGPGTCVPVCLAAKLLRLLGLRGSKII 125 (170)
T ss_pred eeccceEEEechh---hHhhHHHHHHHHHHHHHHHHHhCCCEEEE-cCCceeeHHHHHHHHHHHhhccCCcEE
Confidence 3444443444333 24445666677777777789999999885 5778788843 2344 77776
No 35
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=90.02 E-value=7 Score=33.49 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.5
Q ss_pred CcchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 66 GGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 66 GGGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
||.|+++-.-+++++++ ++.+.++|.+
T Consensus 21 GG~~~~~~~l~~~L~~~--g~~V~v~~~~ 47 (398)
T cd03800 21 GGQNVYVLELARALARL--GHEVDIFTRR 47 (398)
T ss_pred CceeehHHHHHHHHhcc--CceEEEEEec
Confidence 79999999999999886 7888888865
No 36
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=89.35 E-value=4.1 Score=34.95 Aligned_cols=109 Identities=12% Similarity=0.096 Sum_probs=55.1
Q ss_pred cchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhHHHH
Q psy15557 67 GGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIG 146 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslG 146 (207)
|.+...-.-+++++++ ++++.+.|++.... .++. +..|++ ++.+... .+...+....+-.....+.
T Consensus 12 g~~~~~~~La~~L~~~--g~eV~vv~~~~~~~-~~~~----~~~g~~-----~~~i~~~--~~~~~~~~~~l~~~~~~~~ 77 (348)
T TIGR01133 12 GHIFPALAVAEELIKR--GVEVLWLGTKRGLE-KRLV----PKAGIE-----FYFIPVG--GLRRKGSFRLIKTPLKLLK 77 (348)
T ss_pred HHHhHHHHHHHHHHhC--CCEEEEEeCCCcch-hccc----ccCCCc-----eEEEecc--CcCCCChHHHHHHHHHHHH
Confidence 5665444557777776 68888888763211 1111 112222 2223222 1111111111111122234
Q ss_pred HHHHHHHHHhcCCCCEEEECCCccchHH-HHHHhCCCeeEEeee
Q psy15557 147 SMILGVEALLSFQPDIYIDTMGYAFTYP-LFSYIGGSKVACYIH 189 (207)
Q Consensus 147 Si~L~~EAl~~~~PDVfIDTmGyaFtyP-l~k~l~g~~V~~YvH 189 (207)
.+.-..+.+.+..||+.+-+++++.... +++.+.|.|++.+.|
T Consensus 78 ~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~ 121 (348)
T TIGR01133 78 AVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQ 121 (348)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEEECC
Confidence 4444456688889999999987754332 345567888875444
No 37
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=89.17 E-value=6.5 Score=35.62 Aligned_cols=77 Identities=14% Similarity=0.361 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHhhhhccCCccEEEEEccCCCCCCcchhHHHHHHHHHHhh-CCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 30 VLPISVLLFKYYVSKKRKSYNVLKTVAFFHPYCNAGGGGERVLWTAVLALHQK-YPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 30 ~l~~~~~~~r~~~~~k~~~~~~~~~VgFFHPycnaGGGGERVLW~Ai~alq~~-~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
..++.++..+.|+++.+...+....|...=|-+|. |..|=.+++++.+. ||+..+++-..+.+-+..+++++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~p~VSViiP~~ne----e~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~ 93 (373)
T TIGR03472 18 YTLLAAALVRRFFRRAARAPRAWPPVSVLKPLHGD----EPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRA 93 (373)
T ss_pred HHHHHHHHHhhhhccCCCCCCCCCCeEEEEECCCC----ChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHH
Confidence 33333444455555433333444668889998876 46677889888654 78888877322222122578888777
Q ss_pred hc
Q psy15557 109 RF 110 (207)
Q Consensus 109 rF 110 (207)
++
T Consensus 94 ~~ 95 (373)
T TIGR03472 94 DF 95 (373)
T ss_pred hC
Confidence 54
No 38
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=88.56 E-value=3.5 Score=34.13 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=23.9
Q ss_pred CCCcchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 64 AGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 64 aGGGGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
..||+|+.+..-+++++++ ++.+.++|.+
T Consensus 12 ~~~G~~~~~~~l~~~L~~~--g~~v~~~~~~ 40 (364)
T cd03814 12 QVNGVVRTLQRLVEHLRAR--GHEVLVIAPG 40 (364)
T ss_pred cccceehHHHHHHHHHHHC--CCEEEEEeCC
Confidence 3478899999999999886 7888888876
No 39
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=87.43 E-value=4.5 Score=33.95 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=56.5
Q ss_pred EEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCC
Q psy15557 55 VAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASL 134 (207)
Q Consensus 55 VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~ 134 (207)
|-+.++..+. ||.||+...-.++++++ ++.+.+++...+...+. .. + ...+..+.. ...
T Consensus 2 il~~~~~~~~-gG~~~~~~~l~~~L~~~--g~~v~v~~~~~~~~~~~-~~---~---------~~~~~~~~~-----~~~ 60 (360)
T cd04951 2 ILYVITGLGL-GGAEKQVVDLADQFVAK--GHQVAIISLTGESEVKP-PI---D---------ATIILNLNM-----SKN 60 (360)
T ss_pred eEEEecCCCC-CCHHHHHHHHHHhcccC--CceEEEEEEeCCCCccc-hh---h---------ccceEEecc-----ccc
Confidence 4456666654 59999999999999876 55666654321111110 00 0 000011111 000
Q ss_pred CCchhhhhHHHHHHHHHHHHHhcCCCCEEEECCCccchHH-HHHHh-CCCeeEEeeeCc
Q psy15557 135 YPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP-LFSYI-GGSKVACYIHYP 191 (207)
Q Consensus 135 yp~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyP-l~k~l-~g~~V~~YvHYP 191 (207)
.++ .+.++.-..+.+.+..||+..-+.-.+.... +++.+ .+++++...|-.
T Consensus 61 --~~~----~~~~~~~~~~~~~~~~pdiv~~~~~~~~~~~~l~~~~~~~~~~v~~~h~~ 113 (360)
T cd04951 61 --PLS----FLLALWKLRKILRQFKPDVVHAHMFHANIFARLLRLFLPSPPLICTAHSK 113 (360)
T ss_pred --chh----hHHHHHHHHHHHHhcCCCEEEEcccchHHHHHHHHhhCCCCcEEEEeecc
Confidence 011 1233444566778889998776553332222 33333 357888777743
No 40
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=85.50 E-value=7.1 Score=34.44 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=33.6
Q ss_pred EEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 54 TVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 54 ~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
+...+||.-...||.|+....-.+++.++ ++.+.|+|++
T Consensus 8 ~~~~~~~~~~~~GG~e~~v~~la~~L~~~--G~~V~v~~~~ 46 (405)
T TIGR03449 8 TSPLQQPGTGDAGGMNVYILETATELARR--GIEVDIFTRA 46 (405)
T ss_pred CCccccCCCcCCCCceehHHHHHHHHhhC--CCEEEEEecc
Confidence 45567888888889999999999999997 7899999876
No 41
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=85.19 E-value=10 Score=34.41 Aligned_cols=48 Identities=8% Similarity=0.084 Sum_probs=32.5
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCCCEEEECCCccchHH-HHHHhCCCeeE
Q psy15557 138 FTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP-LFSYIGGSKVA 185 (207)
Q Consensus 138 fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyP-l~k~l~g~~V~ 185 (207)
+.-+...+.+.+-++.-+.++.||+.+=+-||+-.-+ ++..+.|.|+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~ 118 (352)
T PRK12446 70 IKDPFLVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVL 118 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEE
Confidence 3344455666777777799999999999888874322 34556676653
No 42
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=84.85 E-value=2.6 Score=30.90 Aligned_cols=101 Identities=19% Similarity=0.127 Sum_probs=46.6
Q ss_pred CcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhHHH
Q psy15557 66 GGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSI 145 (207)
Q Consensus 66 GGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQsl 145 (207)
||.|+....-++++.++ ++.+.++|.+.+ ++ .+ .... +.+.+..+.-.. ..+ .+..+.
T Consensus 1 GG~~~~~~~l~~~L~~~--G~~V~v~~~~~~--~~------~~--~~~~--~~~~~~~~~~~~----~~~-~~~~~~--- 58 (160)
T PF13579_consen 1 GGIERYVRELARALAAR--GHEVTVVTPQPD--PE------DD--EEEE--DGVRVHRLPLPR----RPW-PLRLLR--- 58 (160)
T ss_dssp SHHHHHHHHHHHHHHHT--T-EEEEEEE-----GG------G---SEEE--TTEEEEEE--S-----SSS-GGGHCC---
T ss_pred CCHHHHHHHHHHHHHHC--CCEEEEEecCCC--Cc------cc--cccc--CCceEEeccCCc----cch-hhhhHH---
Confidence 79999999999999998 778888776522 11 11 1111 334444332211 111 111111
Q ss_pred HHHHHHHHHH--hcCCCCEEEECCCccchHH-HHHHhCCCeeEEeee
Q psy15557 146 GSMILGVEAL--LSFQPDIYIDTMGYAFTYP-LFSYIGGSKVACYIH 189 (207)
Q Consensus 146 GSi~L~~EAl--~~~~PDVfIDTmGyaFtyP-l~k~l~g~~V~~YvH 189 (207)
....-.+.+ .+..||+..-....+..+. ++|...++|++.-+|
T Consensus 59 -~~~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 59 -FLRRLRRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp -HHHHHHHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred -HHHHHHHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 112222333 6788999886662211111 224345899999998
No 43
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=84.33 E-value=14 Score=32.39 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=55.6
Q ss_pred CCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhH
Q psy15557 64 AGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQ 143 (207)
Q Consensus 64 aGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQ 143 (207)
.+||-|+++..-.+++++. ++.+.+|+-. +.++.++..+ ++...+...++ ++..+. +..+ ..
T Consensus 10 ~~GGv~~~~~~l~~~l~~~--g~~v~~~~~~---~~~~~~~~~~-~~~~~~~g~~~---~~~~~~------~~~~---~~ 71 (372)
T cd03792 10 YGGGVAEILHSLVPLMRDL--GVDTRWEVIK---GDPEFFNVTK-KFHNALQGADI---ELSEEE------KEIY---LE 71 (372)
T ss_pred CCCcHHHHHHHHHHHHHHc--CCCceEEecC---CChhHHHHHH-HhhHhhcCCCC---CCCHHH------HHHH---HH
Confidence 4679999999999999987 5666666543 1222233211 11111110111 111110 0000 00
Q ss_pred HHHHHHHHHHHHhcCCCCEEEECCCccchHHHHHHhCCCeeEEeeeCcc
Q psy15557 144 SIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPT 192 (207)
Q Consensus 144 slGSi~L~~EAl~~~~PDVfIDTmGyaFtyPl~k~l~g~~V~~YvHYPt 192 (207)
...+.... .+.+..|||..-....+..++.++...+.|++..+|-+.
T Consensus 72 ~~~~~~~~--~~~~~~~Dvv~~h~~~~~~~~~~~~~~~~~~i~~~H~~~ 118 (372)
T cd03792 72 WNEENAER--PLLDLDADVVVIHDPQPLALPLFKKKRGRPWIWRCHIDL 118 (372)
T ss_pred HHHHHhcc--ccccCCCCEEEECCCCchhHHHhhhcCCCeEEEEeeeec
Confidence 00000000 134568999875555566777766545889999999654
No 44
>KOG3339|consensus
Probab=84.27 E-value=23 Score=31.55 Aligned_cols=113 Identities=18% Similarity=0.219 Sum_probs=58.7
Q ss_pred HHHHHhhhhccCCc--cEEEEEccCCCCCCc-chhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeec
Q psy15557 39 KYYVSKKRKSYNVL--KTVAFFHPYCNAGGG-GERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLP 115 (207)
Q Consensus 39 r~~~~~k~~~~~~~--~~VgFFHPycnaGGG-GERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~ 115 (207)
|--.+..++.++++ .+.-|+ ++||- ||-. .-++++|++|....+++=.+| +-=.+|+++ |...+.
T Consensus 24 ~~~~~~~k~~Pk~~s~~~lVvl----GSGGHT~EMl--rLl~~l~~~y~~r~yI~a~tD-----~mS~~k~~~-F~~~~a 91 (211)
T KOG3339|consen 24 RHTQRSTKKDPKDKSLSTLVVL----GSGGHTGEML--RLLEALQDLYSPRSYIAADTD-----EMSEQKARS-FELSLA 91 (211)
T ss_pred HHHHhccCCCCcCCcceEEEEE----cCCCcHHHHH--HHHHHHHhhcCceEEEEecCc-----hhhHHHHHh-hhcccc
Confidence 44444555544332 444443 44432 4532 556788999887777764444 222455655 655555
Q ss_pred CCceEEEEcCccceeeCCCCCchhhhhHHHHHHHHHHHHHhcCCCCEEEEC
Q psy15557 116 EQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDT 166 (207)
Q Consensus 116 ~~~i~FV~Lr~r~lve~~~yp~fTLLgQslGSi~L~~EAl~~~~PDVfIDT 166 (207)
..+.++....+.+-|..+ | .|=.+-+++++..++--+.+-.||++.-.
T Consensus 92 ~~~a~~~~ipRsReVgQS-~--ltSv~Tti~all~s~~lv~RirPdlil~N 139 (211)
T KOG3339|consen 92 HCKAKNYEIPRSREVGQS-W--LTSVFTTIWALLQSFVLVWRIRPDLILCN 139 (211)
T ss_pred ccchhheecchhhhhhhh-h--hhhHHHHHHHHHHHheEEEecCCCEEEEC
Confidence 344444443332223222 1 33344445555555555667789998754
No 45
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=82.73 E-value=18 Score=30.23 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=26.0
Q ss_pred EEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 57 FFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 57 FFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
||.|+ .||.|+.+....+++.++ ++.+.+++.+
T Consensus 8 ~~~p~---~gG~~~~~~~l~~~L~~~--g~~v~v~~~~ 40 (357)
T cd03795 8 FYPPD---RGGIEQVIRDLAEGLAAR--GIEVAVLCAS 40 (357)
T ss_pred CCCCC---CCcHHHHHHHHHHHHHhC--CCceEEEecC
Confidence 44555 679999999999999887 7777777765
No 46
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=79.84 E-value=20 Score=30.65 Aligned_cols=94 Identities=20% Similarity=0.223 Sum_probs=57.3
Q ss_pred chhHHH-HHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhHHHH
Q psy15557 68 GERVLW-TAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIG 146 (207)
Q Consensus 68 GERVLW-~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslG 146 (207)
|+=++. -+++++.+++|+.++.+-|.. +.+++++... .+| +++....++ ..+.+.
T Consensus 11 GD~i~~~p~l~~Lk~~~P~~~I~~l~~~---~~~~l~~~~p-----~id----~v~~~~~~~------------~~~~~~ 66 (279)
T cd03789 11 GDVVLATPLLRALKARYPDARITVLAPP---WFAPLLELMP-----EVD----RVIVLPKKH------------GKLGLG 66 (279)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECh---hhHHHHhcCC-----ccC----EEEEcCCcc------------cccchH
Confidence 333433 468899999999999998864 3455555421 111 334444332 133445
Q ss_pred HHHHHHHHHhcCCCCEEEECCCccchHHHHHHhCC--CeeEE
Q psy15557 147 SMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGG--SKVAC 186 (207)
Q Consensus 147 Si~L~~EAl~~~~PDVfIDTmGyaFtyPl~k~l~g--~~V~~ 186 (207)
...--+..+.+...|+.+|.++..-+.-+.+ +.+ .+++.
T Consensus 67 ~~~~~~~~l~~~~~D~vi~~~~~~~~~~~~~-~~~~~~~~g~ 107 (279)
T cd03789 67 ARRRLARALRRRRYDLAIDLQGSLRSALLPF-LAGAPRRIGF 107 (279)
T ss_pred HHHHHHHHHhhcCCCEEEECCCccHHHHHHH-HhCCCeEEEe
Confidence 5556667788889999999998776554444 444 34443
No 47
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=79.56 E-value=35 Score=28.51 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=28.6
Q ss_pred EEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 55 VAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 55 VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
|.++.|.- .+|+|+.+|..+++++++ ++.+.++|.+
T Consensus 2 i~~~~~~~--~~~~~~~~~~~~~~L~~~--g~~v~v~~~~ 37 (355)
T cd03799 2 IAYLVKEF--PRLSETFILREILALEAA--GHEVEIFSLR 37 (355)
T ss_pred EEEECCCC--CCcchHHHHHHHHHHHhC--CCeEEEEEec
Confidence 56677665 445999999999999987 7888888765
No 48
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=78.14 E-value=26 Score=32.36 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=28.8
Q ss_pred cEEE-EEccC--CCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCC
Q psy15557 53 KTVA-FFHPY--CNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDV 95 (207)
Q Consensus 53 ~~Vg-FFHPy--cnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~ 95 (207)
+.|+ |.||. -+. ||+|+.+..-++++.++ ++.+.|.|.+.
T Consensus 59 mrI~~~~~~~~~~~~-gG~~~~~~~l~~~L~~~--G~eV~vlt~~~ 101 (465)
T PLN02871 59 RRIALFVEPSPFSYV-SGYKNRFQNFIRYLREM--GDEVLVVTTDE 101 (465)
T ss_pred ceEEEEECCcCCccc-ccHHHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 3455 55753 344 47788888999999886 78888888763
No 49
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=75.86 E-value=41 Score=30.28 Aligned_cols=115 Identities=22% Similarity=0.285 Sum_probs=75.8
Q ss_pred EEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCC--------ChhHHHHHHHHhc-ceeecCCceEEEEcCcc
Q psy15557 57 FFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDA--------SPSEIIKRAHQRF-NIVLPEQAINFVYLYRR 127 (207)
Q Consensus 57 FFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~--------~~~~il~~a~~rF-~i~L~~~~i~FV~Lr~r 127 (207)
=+||-....-+-.+.+|-..++..+. ++-++|+||.... ..--.++.+.++| +. ++|-.+--
T Consensus 131 ~l~p~~~~~~~~~~~~~pi~~~a~~~--gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~~fP~l-------~IVl~H~G 201 (293)
T COG2159 131 KLHPVAQGFYPDDPRLYPIYEAAEEL--GVPVVIHTGAGPGGAGLEKGHSDPLYLDDVARKFPEL-------KIVLGHMG 201 (293)
T ss_pred EecccccCCCCCChHHHHHHHHHHHc--CCCEEEEeCCCCCCcccccCCCCchHHHHHHHHCCCC-------cEEEEecC
Confidence 57787777778888899999888887 8999999998432 2234677777766 32 22332221
Q ss_pred ceeeCCCCCchhhhhHHHHHHHHHHHHHhcCCCCEEEECCCccchHH---HH---HHhCCCeeEEeeeCcccccc
Q psy15557 128 KFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP---LF---SYIGGSKVACYIHYPTITKA 196 (207)
Q Consensus 128 ~lve~~~yp~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyP---l~---k~l~g~~V~~YvHYPtIStD 196 (207)
. .||... ..-.+.+..|.+|+||-+....|| ++ ..++.-||+.=+=||-++.+
T Consensus 202 ~-----~~p~~~-----------~a~~~a~~~~nvy~d~s~~~~~~~~~~~~~~~~~~~~dkilFGSD~P~~~~~ 260 (293)
T COG2159 202 E-----DYPWEL-----------EAIELAYAHPNVYLDTSGVRPKYFAPPLLEFLKELGPDKILFGSDYPAIHPE 260 (293)
T ss_pred C-----CCchhH-----------HHHHHHHhCCCceeeeeccccccCChHHHHHHHhcccCeEEecCCCCCcCHH
Confidence 1 344331 111233667999999999975432 33 23344688888889999987
No 50
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=75.54 E-value=14 Score=31.30 Aligned_cols=73 Identities=21% Similarity=0.297 Sum_probs=55.9
Q ss_pred CceEEEEcCccceeeCCCCCchh------hhhHHHHHHHHHHHHHhcCCCCEEEECCCccchHHHHHHhCCCeeEEeeeC
Q psy15557 117 QAINFVYLYRRKFVEASLYPYFT------LLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHY 190 (207)
Q Consensus 117 ~~i~FV~Lr~r~lve~~~yp~fT------LLgQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyPl~k~l~g~~V~~YvHY 190 (207)
+.|+.+..+..+-..+..+|... +-||+.......+.+- -++|||.|=-.|+..++.+--.+-++++++|.=|
T Consensus 19 ~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~av~~a~~~L~~~-Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 19 PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQAVARAARQLRAQ-GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFEF 97 (171)
T ss_pred CCcEEEEeCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHc-CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEEE
Confidence 34555666665556667776543 4477777777777666 7899999999999999999777779999999876
No 51
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=74.13 E-value=17 Score=34.50 Aligned_cols=43 Identities=16% Similarity=0.123 Sum_probs=34.6
Q ss_pred EEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCCh
Q psy15557 55 VAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASP 99 (207)
Q Consensus 55 VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~ 99 (207)
|.-.|=.-|.| -|-+|=..|++|.++.|++.++|.|.+.+.|.
T Consensus 5 i~G~~g~~N~G--deAil~~ii~~l~~~~p~~~i~v~S~~P~~t~ 47 (426)
T PRK10017 5 ILGNHTCGNRG--DSAILRGLLDAINILNPHAEVDVMSRYPVSSS 47 (426)
T ss_pred EEccccCCCcc--HHHHHHHHHHHHHhhCCCCeEEEEecCccchh
Confidence 44455555664 89999999999999999999999999876544
No 52
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=73.66 E-value=6.1 Score=29.91 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=27.7
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeec
Q psy15557 74 TAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLP 115 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~ 115 (207)
.++++++++ +.++++-|.....+++++.++. +..|++++
T Consensus 21 e~l~~L~~~--g~~~~~lTNns~~s~~~~~~~L-~~~Gi~~~ 59 (101)
T PF13344_consen 21 EALDALRER--GKPVVFLTNNSSRSREEYAKKL-KKLGIPVD 59 (101)
T ss_dssp HHHHHHHHT--TSEEEEEES-SSS-HHHHHHHH-HHTTTT--
T ss_pred HHHHHHHHc--CCCEEEEeCCCCCCHHHHHHHH-HhcCcCCC
Confidence 456666666 6888888998888999999999 55887766
No 53
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=72.13 E-value=78 Score=32.30 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=25.5
Q ss_pred EEEEEccCCCCCCcchhHHHHHHHHHHhh
Q psy15557 54 TVAFFHPYCNAGGGGERVLWTAVLALHQK 82 (207)
Q Consensus 54 ~VgFFHPycnaGGGGERVLW~Ai~alq~~ 82 (207)
.|.|+.+....| |.||++-.-+.++.++
T Consensus 283 rIl~vi~sl~~G-GAEr~~~~La~~l~~~ 310 (694)
T PRK15179 283 PVLMINGSLGAG-GAERQFVNTAVALQSA 310 (694)
T ss_pred eEEEEeCCCCCC-cHHHHHHHHHHHHHhc
Confidence 588999999987 9999999999999986
No 54
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=71.94 E-value=20 Score=31.21 Aligned_cols=90 Identities=14% Similarity=0.164 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCce-EEEEcCccceeeCCCCCchhhhhHHHHHHHH
Q psy15557 72 LWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAI-NFVYLYRRKFVEASLYPYFTLLGQSIGSMIL 150 (207)
Q Consensus 72 LW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i-~FV~Lr~r~lve~~~yp~fTLLgQslGSi~L 150 (207)
.+-+++++.++||+.++.+-+.. ...++++. + ..| +++.+..+++-.. .+. ++....+..
T Consensus 16 ~~p~l~~Lr~~~P~a~I~~l~~~---~~~~~~~~---------~-p~vd~v~~~~~~~~~~~----~~~--~~~~~~~~~ 76 (319)
T TIGR02193 16 TLPALTDIKRALPDVEIDWVVEE---GFADIVRL---------H-PAVDEVIPVALRRWRKT----LFS--AATWREIKA 76 (319)
T ss_pred HHHHHHHHHHhCCCCEEEEEECh---hHhhhhhc---------C-CCccEEEEechhhhhhc----ccc--chhHHHHHH
Confidence 35688999999999999988764 33445542 1 223 3455544432111 010 122222333
Q ss_pred HHHHHhcCCCCEEEECCCccchHHHHHHhC
Q psy15557 151 GVEALLSFQPDIYIDTMGYAFTYPLFSYIG 180 (207)
Q Consensus 151 ~~EAl~~~~PDVfIDTmGyaFtyPl~k~l~ 180 (207)
..+.+.+...|+.||.++...+.-+.++++
T Consensus 77 ~~~~lr~~~yD~vi~~~~~~~s~~l~~~~~ 106 (319)
T TIGR02193 77 LRALLRAERYDAVIDAQGLIKSALVARMAR 106 (319)
T ss_pred HHHHHhhccchhhhhhhhhHHHHHHHHhhC
Confidence 345677789999999998766655555444
No 55
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=71.81 E-value=63 Score=29.53 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=54.3
Q ss_pred CCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhh
Q psy15557 63 NAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLG 142 (207)
Q Consensus 63 naGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLg 142 (207)
+.+|+--|+.. -.++|.++ ++++.|.+....-..+++ .+ .+.++++.+..++ -.....++ ++.
T Consensus 12 ~~~~~~~R~~~-~a~~L~~~--G~~V~ii~~~~~~~~~~~----~~-------~~~v~~~~~~~~~-~~~~~~~~--~~~ 74 (415)
T cd03816 12 GDIGRSPRMQY-HALSLAKH--GWKVDLVGYLETPPHDEI----LS-------NPNITIHPLPPPP-QRLNKLPF--LLF 74 (415)
T ss_pred cccCCCHHHHH-HHHHHHhc--CceEEEEEecCCCCCHHH----hc-------CCCEEEEECCCCc-cccccchH--HHH
Confidence 44666677765 55668776 667766665421111111 11 2456666665543 01111122 111
Q ss_pred HH--HHHHHHH--HHHHhcCCCCEEEECCCccchHH----HHHHhCCCeeEEeee
Q psy15557 143 QS--IGSMILG--VEALLSFQPDIYIDTMGYAFTYP----LFSYIGGSKVACYIH 189 (207)
Q Consensus 143 Qs--lGSi~L~--~EAl~~~~PDVfIDTmGyaFtyP----l~k~l~g~~V~~YvH 189 (207)
.. +-....+ +..+.+..||+.+-+...++... +++.+.|.|++..+|
T Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h 129 (415)
T cd03816 75 APLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWH 129 (415)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcC
Confidence 11 1111111 11245567999997665443222 124457899999888
No 56
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=66.66 E-value=78 Score=29.56 Aligned_cols=56 Identities=20% Similarity=0.364 Sum_probs=34.5
Q ss_pred CccEEEEEccCCCCCCcchhHHHHHHHHHHhh-CCCce--EEEEcCCCCCChhHHHHHHHHhc
Q psy15557 51 VLKTVAFFHPYCNAGGGGERVLWTAVLALHQK-YPDYK--IYIYTGDVDASPSEIIKRAHQRF 110 (207)
Q Consensus 51 ~~~~VgFFHPycnaGGGGERVLW~Ai~alq~~-~~~~~--~vIYTgd~~~~~~~il~~a~~rF 110 (207)
..+.|+..=|--|. |.+|=..++++.+. ||+.+ ++|=.+..+-+..++++++++++
T Consensus 47 ~~P~vsVIIP~yNe----~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~ 105 (439)
T TIGR03111 47 KLPDITIIIPVYNS----EDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEF 105 (439)
T ss_pred CCCCEEEEEEeCCC----hHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhC
Confidence 34678888898884 47888899998764 67543 33322111113356777666654
No 57
>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]
Probab=64.11 E-value=98 Score=29.45 Aligned_cols=129 Identities=20% Similarity=0.236 Sum_probs=78.3
Q ss_pred CCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhh
Q psy15557 62 CNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLL 141 (207)
Q Consensus 62 cnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLL 141 (207)
|=.|==|.++.|.|+..-.+++|+.++++| || ++.++..-+++.-+.. +++++++ ....++-+-=|-=-+=
T Consensus 8 aMGGD~~P~~vv~g~~~al~~~~~~~~iLv-Gd-----~~~i~~~L~~~~~~~~-~~i~i~~--a~~~I~m~d~p~~AvR 78 (338)
T COG0416 8 AMGGDHGPEVVVPGALQALEEHPDLEIILV-GD-----EDKIEPLLAKAPKLLR-ERIEIVH--AEEVIEMDDKPSQALR 78 (338)
T ss_pred ccCCCCCcHHHHHHHHHHHHhCCCcEEEEE-CC-----HHHHHHHHhhcccccc-ccceEEe--ccccccCCCCHHHHHH
Confidence 444445778888887777777889988875 55 3444444343332333 6677776 3344555444422211
Q ss_pred hHHHHHHHHHHHHHhcCCCCEEEECCCccchHHHH-----HHhCC-CeeEEeeeCcccc---cccccc
Q psy15557 142 GQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLF-----SYIGG-SKVACYIHYPTIT---KAQSAL 200 (207)
Q Consensus 142 gQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyPl~-----k~l~g-~~V~~YvHYPtIS---tDMl~~ 200 (207)
-.-=.||.+|.|++.+-.-|..|- .|-...+--. +.+-| .|=+-=++.||+. +.||.+
T Consensus 79 ~k~~sSM~~Ai~lVkeg~ADa~VS-AGnTGAlma~a~~~lg~i~gI~RPAi~~~~Pt~~~~~~~~LDv 145 (338)
T COG0416 79 KKKGSSMRVALDLVKEGKADACVS-AGNTGALMALALLKLGRIKGIDRPALATLLPTIDGGKTVVLDV 145 (338)
T ss_pred cCCCcHHHHHHHHHhcCcCCEEEe-cCchHHHHHHHHHHhccCCCCCccceeeeccccCCCceEEEeC
Confidence 111149999999999999999884 4555444322 22334 3667778899987 445554
No 58
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=63.59 E-value=16 Score=30.10 Aligned_cols=60 Identities=30% Similarity=0.406 Sum_probs=43.9
Q ss_pred EEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEE-EcCCC-CCChhHHHHHHHHhcceeecCCceEEEEcCc
Q psy15557 54 TVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYI-YTGDV-DASPSEIIKRAHQRFNIVLPEQAINFVYLYR 126 (207)
Q Consensus 54 ~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vI-YTgd~-~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~ 126 (207)
.|.|+ ||-|.++=.|.+.++++||+.+++- |.|.. +.+.+++++..++ -. ..+.||-+-.
T Consensus 50 ~ifll-------G~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~-----~~-pdiv~vglG~ 111 (172)
T PF03808_consen 50 RIFLL-------GGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINA-----SG-PDIVFVGLGA 111 (172)
T ss_pred eEEEE-------eCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHH-----cC-CCEEEEECCC
Confidence 56666 6889999999999999999999994 56632 3566777777765 22 4566776654
No 59
>PRK11204 N-glycosyltransferase; Provisional
Probab=62.15 E-value=1.2e+02 Score=27.38 Aligned_cols=53 Identities=21% Similarity=0.413 Sum_probs=33.4
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHh-hCCCceEEEEcCCCCCChhHHHHHHHHh
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQ-KYPDYKIYIYTGDVDASPSEIIKRAHQR 109 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~-~~~~~~~vIYTgd~~~~~~~il~~a~~r 109 (207)
+.|+..=|-.|.. .++=..++++.+ .||+.+++|-....+-+..+++++..++
T Consensus 54 p~vsViIp~yne~----~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~ 107 (420)
T PRK11204 54 PGVSILVPCYNEG----ENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQ 107 (420)
T ss_pred CCEEEEEecCCCH----HHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHh
Confidence 4588888888864 456677777764 4788777776533222345566665554
No 60
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=61.81 E-value=61 Score=28.45 Aligned_cols=88 Identities=11% Similarity=0.014 Sum_probs=49.9
Q ss_pred HHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhHHHHHHHHHH
Q psy15557 73 WTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGV 152 (207)
Q Consensus 73 W~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslGSi~L~~ 152 (207)
--++++++++||+.++.+-+.+ ..+++++.-- .+| +++....++. +.. +....--.
T Consensus 17 ~p~l~~Lk~~~P~a~I~~l~~~---~~~~l~~~~p-----~id----~v~~~~~~~~-----~~~-------~~~~~~~~ 72 (334)
T TIGR02195 17 QSLYRLLKKRYPQAVIDVLAPA---WCRPLLERMP-----EIR----QAIDMPLGHG-----ALE-------LTERRRLG 72 (334)
T ss_pred HHHHHHHHHHCCCCEEEEEech---hhHHHHhcCc-----hhc----eeeecCCccc-----chh-------hhHHHHHH
Confidence 4578999999999999998864 2344554321 122 1222222211 111 11112234
Q ss_pred HHHhcCCCCEEEECCCccchHHHHHHhCCC--eeE
Q psy15557 153 EALLSFQPDIYIDTMGYAFTYPLFSYIGGS--KVA 185 (207)
Q Consensus 153 EAl~~~~PDVfIDTmGyaFtyPl~k~l~g~--~V~ 185 (207)
.++.+...|+.||.+|.. -.-++.+++|. |++
T Consensus 73 ~~lr~~~yD~vi~l~~~~-~s~ll~~~~~~~~riG 106 (334)
T TIGR02195 73 RSLREERYDQAIVLPNSL-KSALIPFFAGIPHRTG 106 (334)
T ss_pred HHHhhcCCCEEEECCCCH-HHHHHHHHcCCCceee
Confidence 668888999999999863 34445556663 555
No 61
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=61.57 E-value=46 Score=25.34 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=43.7
Q ss_pred ccEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCcccee
Q psy15557 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFV 130 (207)
Q Consensus 52 ~~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lv 130 (207)
..+|=|+.|.|... |.+--.++.+.+++|+. .+|.-|.+..+ ...++|++.-- ..++..++...+
T Consensus 24 ~vvV~f~a~~c~~C----~~~~p~l~~la~~~~~i--~f~~Vd~~~~~-----~l~~~~~v~~v---Pt~l~fk~G~~v 88 (113)
T cd02989 24 RVVCHFYHPEFFRC----KIMDKHLEILAKKHLET--KFIKVNAEKAP-----FLVEKLNIKVL---PTVILFKNGKTV 88 (113)
T ss_pred cEEEEEECCCCccH----HHHHHHHHHHHHHcCCC--EEEEEEcccCH-----HHHHHCCCccC---CEEEEEECCEEE
Confidence 35677888999988 99999999999999875 45666644332 35577887533 244555454443
No 62
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=60.67 E-value=1.3e+02 Score=28.00 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHhcCCCCEEEECCCccchHHHH-HHhCCCeeEEeeeCcc
Q psy15557 142 GQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLF-SYIGGSKVACYIHYPT 192 (207)
Q Consensus 142 gQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyPl~-k~l~g~~V~~YvHYPt 192 (207)
...+-++.-+.+-+.++.||+-|-|=||+-.-|.+ +.+.| +=.++|..-
T Consensus 74 ~~~~~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~--iPv~ihEqn 123 (357)
T COG0707 74 FKLLKGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLG--IPVIIHEQN 123 (357)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCC--CCEEEEecC
Confidence 44455666677779999999999999998776644 33334 445566543
No 63
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=58.15 E-value=45 Score=24.91 Aligned_cols=63 Identities=17% Similarity=0.260 Sum_probs=41.4
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCcccee
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFV 130 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lv 130 (207)
.+|-|+-|.|... |.+-..++.+.+++++.+++ .-| ++.+ ...++|+|+-- | .++..+....+
T Consensus 27 vvv~F~a~~c~~C----~~l~~~l~~la~~~~~v~f~--~vd--~~~~----~l~~~~~i~~~--P-t~~~f~~G~~v 89 (113)
T cd02957 27 VVVHFYEPGFPRC----KILDSHLEELAAKYPETKFV--KIN--AEKA----FLVNYLDIKVL--P-TLLVYKNGELI 89 (113)
T ss_pred EEEEEeCCCCCcH----HHHHHHHHHHHHHCCCcEEE--EEE--chhh----HHHHhcCCCcC--C-EEEEEECCEEE
Confidence 4566888999888 88999999999999876543 433 3333 55677887432 1 44555554444
No 64
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=57.06 E-value=1.3e+02 Score=26.04 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=26.2
Q ss_pred EEEEccCCC--CCCcchhHHHHHHHHHHhhCCCceEEEEcC
Q psy15557 55 VAFFHPYCN--AGGGGERVLWTAVLALHQKYPDYKIYIYTG 93 (207)
Q Consensus 55 VgFFHPycn--aGGGGERVLW~Ai~alq~~~~~~~~vIYTg 93 (207)
|.+++++.- ..||.|+.+..-++++.++ -++.++++++
T Consensus 3 I~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~ 42 (388)
T TIGR02149 3 VTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFGD 42 (388)
T ss_pred eEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCCC
Confidence 555555443 3478889999999999886 3666666543
No 65
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=56.95 E-value=58 Score=28.61 Aligned_cols=51 Identities=20% Similarity=0.232 Sum_probs=34.8
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCCCEEEECCCcc-chHHHHHH--hCCCeeEEeee
Q psy15557 138 FTLLGQSIGSMILGVEALLSFQPDIYIDTMGYA-FTYPLFSY--IGGSKVACYIH 189 (207)
Q Consensus 138 fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGya-FtyPl~k~--l~g~~V~~YvH 189 (207)
+.-+.+.+.++.-..+.+.+..||+.+- +||+ |...+++. ..|.|++-|.|
T Consensus 64 ~~~~~~~~~~~~~~~~~l~~~kPdivi~-~~~~~~~~~~a~~a~~~~ip~i~~~~ 117 (380)
T PRK00025 64 LPRLPRLLKIRRRLKRRLLAEPPDVFIG-IDAPDFNLRLEKKLRKAGIPTIHYVS 117 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEE-eCCCCCCHHHHHHHHHCCCCEEEEeC
Confidence 3444666777777788899999999887 4675 44444432 34788887766
No 66
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=56.81 E-value=25 Score=32.97 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=33.0
Q ss_pred CcchhHHHHHHHHHHhhCCCc-eEEEEcCCC----CCChhHHHHHHHHhc
Q psy15557 66 GGGERVLWTAVLALHQKYPDY-KIYIYTGDV----DASPSEIIKRAHQRF 110 (207)
Q Consensus 66 GGGERVLW~Ai~alq~~~~~~-~~vIYTgd~----~~~~~~il~~a~~rF 110 (207)
+|||+-|=.||+.+.+++++. -++|||+.. +-|-+.+.+++++++
T Consensus 78 ~Gg~~~L~~ai~ei~~~~~~P~~I~V~tTC~~e~IGDDi~~v~~e~~~~~ 127 (427)
T PRK02842 78 ADANEELDRVVEELIKRRPNISVLFLVGSCPSEVIKLDLEGLAERLSTEF 127 (427)
T ss_pred CCcHHHHHHHHHHHHhccCCCCEEEEECCChHHhhcCCHHHHHHHhhccc
Confidence 689999999999966666433 577787763 236777888887764
No 67
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=56.60 E-value=67 Score=27.47 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=31.6
Q ss_pred HHHHhcCCCCEEEECCCccchHHHHHHhCCCeeEEeeeCcccc
Q psy15557 152 VEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTIT 194 (207)
Q Consensus 152 ~EAl~~~~PDVfIDTmGyaFtyPl~k~l~g~~V~~YvHYPtIS 194 (207)
.+.+.+..||+.|-+. ++++.-.+| ..|.|+++-.|.-.+.
T Consensus 87 ~~~l~~~~pDlVIsD~-~~~~~~aa~-~~giP~i~i~~~~~~~ 127 (318)
T PF13528_consen 87 IRWLREFRPDLVISDF-YPLAALAAR-RAGIPVIVISNQYWFL 127 (318)
T ss_pred HHHHHhcCCCEEEEcC-hHHHHHHHH-hcCCCEEEEEehHHcc
Confidence 4557888999999996 888766665 6799999887765543
No 68
>PF03948 Ribosomal_L9_C: Ribosomal protein L9, C-terminal domain; InterPro: IPR020069 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....
Probab=55.91 E-value=26 Score=26.32 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=32.5
Q ss_pred HHHHHhhCCCceEEEE--cCCCC-----CChhHHHHHHHHhcceeecCCceE
Q psy15557 76 VLALHQKYPDYKIYIY--TGDVD-----ASPSEIIKRAHQRFNIVLPEQAIN 120 (207)
Q Consensus 76 i~alq~~~~~~~~vIY--Tgd~~-----~~~~~il~~a~~rF~i~L~~~~i~ 120 (207)
.+++.++-.+..+.++ +|+.+ +++++|.+..+++.|+++|.+.|+
T Consensus 4 A~~l~~~l~~~~l~i~~k~g~~gklfGSVt~~dIa~~l~~~~g~~Idk~~I~ 55 (87)
T PF03948_consen 4 AQALAEKLEGITLTIKRKAGENGKLFGSVTSKDIAKALKEQTGIEIDKKKIE 55 (87)
T ss_dssp HHHHHHHHCSSEEEEEECBSSCSSBSSEBSHHHHHHHHHHCCSSSSSSSSBC
T ss_pred HHHHHHHhcCCEEEEEEEecCCcceecCcCHHHHHHHHHHhhCCeEeccEEE
Confidence 3455555556666666 66543 799999999999999999865553
No 69
>PLN02204 diacylglycerol kinase
Probab=55.91 E-value=62 Score=32.84 Aligned_cols=54 Identities=20% Similarity=0.367 Sum_probs=31.9
Q ss_pred cCCccEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEE-EEcCCCCCChhHHHHHH
Q psy15557 49 YNVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIY-IYTGDVDASPSEIIKRA 106 (207)
Q Consensus 49 ~~~~~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~v-IYTgd~~~~~~~il~~a 106 (207)
.+.++..-|.||.++.| .|.|+ |..+..+.++. +.++. +.|.. .-+..++.+++
T Consensus 157 ~r~k~llVivNP~sGkg-~~~~~-~~~V~p~f~~a-~i~~~v~~T~~-aghA~d~~~~~ 211 (601)
T PLN02204 157 GRPKNLLVFVHPLSGKG-SGSRT-WETVSPIFIRA-KVKTKVIVTER-AGHAFDVMASI 211 (601)
T ss_pred CCCceEEEEECCCCCCc-chHHH-HHHHHHHHHHc-CCeEEEEEecC-cchHHHHHHHH
Confidence 33446677999998766 45565 88888777654 34433 33433 23445555544
No 70
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=55.78 E-value=27 Score=32.31 Aligned_cols=54 Identities=11% Similarity=-0.095 Sum_probs=36.3
Q ss_pred EEEccCCC-CCCcchhHHHHHHHHHHhhCCCceEEEEcCCC----CCChhHHHHHHHHh
Q psy15557 56 AFFHPYCN-AGGGGERVLWTAVLALHQKYPDYKIYIYTGDV----DASPSEIIKRAHQR 109 (207)
Q Consensus 56 gFFHPycn-aGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~----~~~~~~il~~a~~r 109 (207)
.-+|-.-= .|||||+=|=.||+.+-++++---++|||+.. +-|-+.+.++++++
T Consensus 58 t~l~E~dvv~g~gg~~~L~~aI~ei~~~~~P~~I~V~sTCv~e~IGDDi~~v~~~~~~~ 116 (396)
T cd01979 58 AELEEGDLSALLNDYAELDRVVTQIKRDRNPSVIFLIGSCTTEVIKMDLEGAAPRLSAE 116 (396)
T ss_pred eecCchhhhhccCchHHHHHHHHHHHHhcCCCEEEEECCCHHHHHhcCHHHHHHHHhhc
Confidence 34444331 45566777889999999987555788887753 23666677777665
No 71
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=55.39 E-value=88 Score=27.06 Aligned_cols=86 Identities=17% Similarity=0.211 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhHHHHHHHH
Q psy15557 71 VLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMIL 150 (207)
Q Consensus 71 VLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslGSi~L 150 (207)
.+-.|+..+.++.|+++++|+... .+.+++-+.. +.. .++ +++.|.- ..+ + +
T Consensus 221 ~li~a~~~l~~~~~~~~l~i~G~g--~~~~~~~~~~-~~~--~~~-~~v~~~g-----~~~-~-------~--------- 272 (372)
T cd04949 221 QLIKAFAKVVKQVPDATLDIYGYG--DEEEKLKELI-EEL--GLE-DYVFLKG-----YTR-D-------L--------- 272 (372)
T ss_pred HHHHHHHHHHHhCCCcEEEEEEeC--chHHHHHHHH-HHc--CCc-ceEEEcC-----CCC-C-------H---------
Confidence 455778888888899999987543 2334443333 322 232 3444332 001 0 0
Q ss_pred HHHHHhcCCCCEEEECCCc-cchHHHHHHh-CCCeeEEe
Q psy15557 151 GVEALLSFQPDIYIDTMGY-AFTYPLFSYI-GGSKVACY 187 (207)
Q Consensus 151 ~~EAl~~~~PDVfIDTmGy-aFtyPl~k~l-~g~~V~~Y 187 (207)
.+.+.+ -|+++++.-+ +|.+++.-.+ .|++|+++
T Consensus 273 -~~~~~~--ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~ 308 (372)
T cd04949 273 -DEVYQK--AQLSLLTSQSEGFGLSLMEALSHGLPVISY 308 (372)
T ss_pred -HHHHhh--hhEEEecccccccChHHHHHHhCCCCEEEe
Confidence 011222 6788888754 5666666433 48888876
No 72
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=54.96 E-value=1.5e+02 Score=26.21 Aligned_cols=89 Identities=17% Similarity=0.182 Sum_probs=51.1
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCce-EEEEcCccceeeCCCCCchhhhhHHHHHHHHHH
Q psy15557 74 TAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAI-NFVYLYRRKFVEASLYPYFTLLGQSIGSMILGV 152 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i-~FV~Lr~r~lve~~~yp~fTLLgQslGSi~L~~ 152 (207)
-++++++++||+.++.+-|.. ...++++.- ..| +++.+.+++. ...+ . .+.+.+--+
T Consensus 18 p~l~~Lk~~~P~a~I~~l~~~---~~~~l~~~~----------p~vd~vi~~~~~~~--~~~~--~-----~~~~~~~l~ 75 (344)
T TIGR02201 18 PVISSLKKNYPDAKIDVLLYQ---ETIPILSEN----------PDINALYGLDRKKA--KAGE--R-----KLANQFHLI 75 (344)
T ss_pred HHHHHHHHHCCCCEEEEEECc---ChHHHHhcC----------CCccEEEEeChhhh--cchH--H-----HHHHHHHHH
Confidence 468899999999999998875 234444431 122 2333332211 0011 1 122222224
Q ss_pred HHHhcCCCCEEEECCCccchHHHHHHhCCC--eeE
Q psy15557 153 EALLSFQPDIYIDTMGYAFTYPLFSYIGGS--KVA 185 (207)
Q Consensus 153 EAl~~~~PDVfIDTmGyaFtyPl~k~l~g~--~V~ 185 (207)
..|.+...|+.||.++-..+.-+.+ +.|. |++
T Consensus 76 ~~lr~~~yD~vidl~~~~~s~ll~~-l~~a~~riG 109 (344)
T TIGR02201 76 KVLRANRYDLVVNLTDQWMVAILVK-LLNARVKIG 109 (344)
T ss_pred HHHHhCCCCEEEECCcchHHHHHHH-hcCCCeEEe
Confidence 5578889999999998776666655 4443 454
No 73
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.59 E-value=25 Score=34.06 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=27.7
Q ss_pred cchhHHHHHHHHHHhhCCCceEEEEcCCCCCCh---hHHHHHHHH
Q psy15557 67 GGERVLWTAVLALHQKYPDYKIYIYTGDVDASP---SEIIKRAHQ 108 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~---~~il~~a~~ 108 (207)
|-||+ -+.+++.+|+.++....+|...++ ++++++.++
T Consensus 270 Gte~~----~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~ 310 (505)
T TIGR00595 270 GTEQV----EEELAKLFPGARIARIDSDTTSRKGAHEALLNQFAN 310 (505)
T ss_pred cHHHH----HHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhc
Confidence 45776 467778899999999999864443 567777665
No 74
>PF02504 FA_synthesis: Fatty acid synthesis protein; InterPro: IPR003664 The plsX gene is part of the bacterial fab gene cluster which encodes several key fatty acid biosynthetic enzymes []. The plsX gene encodes a poorly understood enzyme of phospholipid metabolism [].; GO: 0003824 catalytic activity, 0006633 fatty acid biosynthetic process; PDB: 1VI1_B 1U7N_B.
Probab=52.98 E-value=54 Score=30.55 Aligned_cols=122 Identities=20% Similarity=0.320 Sum_probs=69.1
Q ss_pred CCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhh
Q psy15557 62 CNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLL 141 (207)
Q Consensus 62 cnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLL 141 (207)
+-.|--|.+++-.++..-.+++|+.+++++ || ++.++..-+.++...+ +++++|+ ....++.+-=|.-.+-
T Consensus 7 aMGgD~~p~~~v~ga~~a~~~~~~~~i~lv-G~-----~~~i~~~l~~~~~~~~-~~i~iv~--a~~~I~m~d~p~~a~r 77 (323)
T PF02504_consen 7 AMGGDNGPEEVVEGAILALKENPDLEIVLV-GD-----EEEIKPLLEKYGFELN-SRIEIVH--ASEVIEMDDKPAYALR 77 (323)
T ss_dssp SS-STTTTHHHHHHHHHHHHH-TTEEEEEE-E------HHHHHTT-SS-------TTEEEEE---SB---TTS-HHHHHH
T ss_pred CCCCCcChHHHHHHHHHHHHHCcCeEEEEE-EC-----HHHHHHHHHhcccccc-cceEEEe--cCCeecCCCCHHHHhc
Confidence 344444666776666666666788887775 44 4444444444444444 6788887 5567888888877665
Q ss_pred hHHHHHHHHHHHHHhcCCCCEEEECCCccchHHHHHHh-----CC-CeeEEeeeCcccc
Q psy15557 142 GQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYI-----GG-SKVACYIHYPTIT 194 (207)
Q Consensus 142 gQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyPl~k~l-----~g-~~V~~YvHYPtIS 194 (207)
--- .||..++|.+.+-.-|.++- .|-.-.+.....+ .| .|=+.-+-.||..
T Consensus 78 ~k~-SSm~~a~~lvk~g~ada~vS-aGnTGA~~a~a~~~l~~i~gi~RPal~~~~Pt~~ 134 (323)
T PF02504_consen 78 KKK-SSMVVALELVKEGEADAFVS-AGNTGALMAAALLILGRIPGIDRPALAAVLPTVK 134 (323)
T ss_dssp H-T-CHHHHHHHHHHTTS-SEEEE-SS-HHHHHHHHHHCT-B-TT-SS-EEEEEEE-TT
T ss_pred cCC-CcHHHHHHHhhcCCceEEEe-cCchHHHHHHHHHHhccCCCcCCceeeeecCCCC
Confidence 555 99999999999999999985 4666555544322 34 3556667778877
No 75
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=52.34 E-value=25 Score=25.79 Aligned_cols=41 Identities=24% Similarity=0.441 Sum_probs=27.1
Q ss_pred eeeCCCCCchhhhhHHHHHHHHHHHHHhcCCCCEEEECCCc
Q psy15557 129 FVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGY 169 (207)
Q Consensus 129 lve~~~yp~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGy 169 (207)
|..++.||-|-.+|-+.|......-=.....|||-+|-..-
T Consensus 1 ~~~pel~PL~~~vg~a~~~a~~~~~r~l~~~PdV~~~k~~~ 41 (73)
T PF06522_consen 1 KKHPELYPLFVIVGVAVGGATFYLYRLLLTNPDVRWNKKNR 41 (73)
T ss_pred CCCccccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCC
Confidence 45789999999888777544322222233469999997754
No 76
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=52.10 E-value=20 Score=34.17 Aligned_cols=70 Identities=17% Similarity=0.317 Sum_probs=52.2
Q ss_pred EEEEcCCCCCChhHHHHHHHHhcc-------eeecCCceEEEEcCccceeeCCCCCchhhhhHHHHHHHHHHHHHhcCCC
Q psy15557 88 IYIYTGDVDASPSEIIKRAHQRFN-------IVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQP 160 (207)
Q Consensus 88 ~vIYTgd~~~~~~~il~~a~~rF~-------i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslGSi~L~~EAl~~~~P 160 (207)
.|.-||-+++.++.-+...-+-+| ++++ +||+||+=.++.++.-.- +|+=-.|..-|+.|-.+..|
T Consensus 127 LILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIE-DPIE~vh~skkslI~QRE------vG~dT~sF~~aLraALReDP 199 (353)
T COG2805 127 LILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIE-DPIEYVHESKKSLINQRE------VGRDTLSFANALRAALREDP 199 (353)
T ss_pred eEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEec-CchHhhhcchHhhhhHHH------hcccHHHHHHHHHHHhhcCC
Confidence 444588877766665555555444 5676 999999999988876644 46666788889999899999
Q ss_pred CEEE
Q psy15557 161 DIYI 164 (207)
Q Consensus 161 DVfI 164 (207)
||.+
T Consensus 200 DVIl 203 (353)
T COG2805 200 DVIL 203 (353)
T ss_pred CEEE
Confidence 9876
No 77
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=52.08 E-value=16 Score=32.81 Aligned_cols=50 Identities=12% Similarity=0.030 Sum_probs=37.6
Q ss_pred chhHHHHHHHHHHhhCC-----CceEEEEcCCCCCChhHHHHHHHHhcceeecCC
Q psy15557 68 GERVLWTAVLALHQKYP-----DYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQ 117 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~-----~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~ 117 (207)
||+++..|.++++.-.. +..++..|.....+.+++.++..+++|++++++
T Consensus 14 g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~ 68 (321)
T TIGR01456 14 GKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPL 68 (321)
T ss_pred CccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHH
Confidence 45667777777765433 677888888777888999998888889877643
No 78
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=51.96 E-value=2e+02 Score=26.75 Aligned_cols=52 Identities=12% Similarity=0.211 Sum_probs=32.8
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhh-CCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQK-YPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~-~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
+.|+..=|-+|.. .++=..++++++. ||+..++|-....+-+..+++++..+
T Consensus 75 p~vsViIP~yNE~----~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~ 127 (444)
T PRK14583 75 PLVSILVPCFNEG----LNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLA 127 (444)
T ss_pred CcEEEEEEeCCCH----HHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHH
Confidence 5689999999875 5566778887654 78877776643222223445555443
No 79
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=51.79 E-value=36 Score=28.59 Aligned_cols=22 Identities=5% Similarity=0.173 Sum_probs=19.7
Q ss_pred HHHHHHHhhCCCceEEEEcCCC
Q psy15557 74 TAVLALHQKYPDYKIYIYTGDV 95 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd~ 95 (207)
.+++.+++++|+.+++++|+..
T Consensus 66 ~~i~~i~~~~p~~~iivlt~~~ 87 (207)
T PRK15411 66 QRIKQIINQHPNTLFIVFMAIA 87 (207)
T ss_pred HHHHHHHHHCCCCeEEEEECCC
Confidence 4899999999999999999873
No 80
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=51.28 E-value=1.3e+02 Score=28.99 Aligned_cols=94 Identities=23% Similarity=0.409 Sum_probs=59.2
Q ss_pred eEEEEcCCC--CCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhh-------hhHHHHHHHHHHHH---
Q psy15557 87 KIYIYTGDV--DASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTL-------LGQSIGSMILGVEA--- 154 (207)
Q Consensus 87 ~~vIYTgd~--~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTL-------LgQslGSi~L~~EA--- 154 (207)
+|.+=+|+. |.=.+++++..++|++ .++||-+-+.++-+.+.=+.|.+ +.|+|+.+.--+..
T Consensus 3 ki~i~AGE~SGDllGa~LikaLk~~~~------~~efvGvgG~~m~aeG~~sl~~~~elsvmGf~EVL~~lp~llk~~~~ 76 (381)
T COG0763 3 KIALSAGEASGDLLGAGLIKALKARYP------DVEFVGVGGEKMEAEGLESLFDMEELSVMGFVEVLGRLPRLLKIRRE 76 (381)
T ss_pred eEEEEecccchhhHHHHHHHHHHhhCC------CeEEEEeccHHHHhccCccccCHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 455556652 2345667777777665 57788888776655543333332 24566655444333
Q ss_pred ----HhcCCCCEE--EECCCccchHHHHHHhC--C--CeeEEee
Q psy15557 155 ----LLSFQPDIY--IDTMGYAFTYPLFSYIG--G--SKVACYI 188 (207)
Q Consensus 155 ----l~~~~PDVf--IDTmGyaFtyPl~k~l~--g--~~V~~Yv 188 (207)
+.+..||++ ||+. .|++++.|.+- | .|++-||
T Consensus 77 ~~~~i~~~kpD~~i~IDsP--dFnl~vak~lrk~~p~i~iihYV 118 (381)
T COG0763 77 LVRYILANKPDVLILIDSP--DFNLRVAKKLRKAGPKIKIIHYV 118 (381)
T ss_pred HHHHHHhcCCCEEEEeCCC--CCchHHHHHHHHhCCCCCeEEEE
Confidence 557789976 6887 58999998774 4 6787776
No 81
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=50.69 E-value=2e+02 Score=26.69 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=55.6
Q ss_pred HHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhHHHHHHH---HH
Q psy15557 75 AVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMI---LG 151 (207)
Q Consensus 75 Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslGSi~---L~ 151 (207)
.|+.|+++ ++.+.|-+-|.+ ...+.-+.+|++-. .+-+.. -|+.+-.++++- --
T Consensus 19 ~I~eL~~~--GheV~it~R~~~-----~~~~LL~~yg~~y~-------~iG~~g---------~~~~~Kl~~~~~R~~~l 75 (335)
T PF04007_consen 19 IIRELEKR--GHEVLITARDKD-----ETEELLDLYGIDYI-------VIGKHG---------DSLYGKLLESIERQYKL 75 (335)
T ss_pred HHHHHHhC--CCEEEEEEeccc-----hHHHHHHHcCCCeE-------EEcCCC---------CCHHHHHHHHHHHHHHH
Confidence 56777776 889999887643 22233345565433 222211 233333443333 33
Q ss_pred HHHHhcCCCCEEEECCCccchHHHHHHhCCCeeEEeeeCcccc
Q psy15557 152 VEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTIT 194 (207)
Q Consensus 152 ~EAl~~~~PDVfIDTmGyaFtyPl~k~l~g~~V~~YvHYPtIS 194 (207)
++...++.||+.| +. .+-.-|-+..+.|.|.+....+|.=.
T Consensus 76 ~~~~~~~~pDv~i-s~-~s~~a~~va~~lgiP~I~f~D~e~a~ 116 (335)
T PF04007_consen 76 LKLIKKFKPDVAI-SF-GSPEAARVAFGLGIPSIVFNDTEHAI 116 (335)
T ss_pred HHHHHhhCCCEEE-ec-CcHHHHHHHHHhCCCeEEEecCchhh
Confidence 4556788999999 33 34445644557799999999987543
No 82
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=50.18 E-value=68 Score=27.02 Aligned_cols=61 Identities=23% Similarity=0.304 Sum_probs=42.7
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCC-CChhHHHHHHHHhcceeecCCceEEEEcCc
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVD-ASPSEIIKRAHQRFNIVLPEQAINFVYLYR 126 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~-~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~ 126 (207)
..|.|. ||.|-|+=.|.+.++++||+.+++-+.|-.+ .+.+++.++.++ - ..++-||-+-.
T Consensus 49 ~~vfll-------G~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~-----s-~~dil~VglG~ 110 (177)
T TIGR00696 49 LPIFLY-------GGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIAR-----S-GAGIVFVGLGC 110 (177)
T ss_pred CeEEEE-------CCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHH-----c-CCCEEEEEcCC
Confidence 356665 6899999999999999999999997755432 223456666655 1 24567777654
No 83
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=48.27 E-value=2.8e+02 Score=27.27 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=39.1
Q ss_pred CccEEEEEccCCCCCCcchhHHHHHHHHHH--hhCCCceEEEEcCCCCCChhHHHHHHHHhc
Q psy15557 51 VLKTVAFFHPYCNAGGGGERVLWTAVLALH--QKYPDYKIYIYTGDVDASPSEIIKRAHQRF 110 (207)
Q Consensus 51 ~~~~VgFFHPycnaGGGGERVLW~Ai~alq--~~~~~~~~vIYTgd~~~~~~~il~~a~~rF 110 (207)
+.+.++..=|-.|-. .|+=..++++. ..||+.++++-+.+.+-+..++++++++++
T Consensus 64 ~~p~vaIlIPA~NE~----~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~ 121 (504)
T PRK14716 64 PEKRIAIFVPAWREA----DVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAARY 121 (504)
T ss_pred CCCceEEEEeccCch----hHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHC
Confidence 457899999999975 78888888753 347887777765332334466777776654
No 84
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=48.17 E-value=1.5e+02 Score=24.09 Aligned_cols=78 Identities=6% Similarity=0.008 Sum_probs=43.5
Q ss_pred ch-hHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH--hcceeecCCceEEEEcCccceeeCCCCCchhhhhHH
Q psy15557 68 GE-RVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ--RFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQS 144 (207)
Q Consensus 68 GE-RVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~--rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQs 144 (207)
|. ++|+..++.+.+... -+++|.+|. ..+++.+..++ +++++.....++.++-..+ . .+..|.-|
T Consensus 28 g~~pli~~~l~~l~~~gi-~~iivv~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~Gt----- 95 (200)
T cd02508 28 GRYRLIDFPLSNMVNSGI-RNVGVLTQY---KSRSLNDHLGSGKEWDLDRKNGGLFILPPQQR-K--GGDWYRGT----- 95 (200)
T ss_pred CeeeeHHHHHHHHHHCCC-CEEEEEeCC---ChHHHHHHHhCCCcccCCCCCCCEEEeCcccC-C--CCCcccCc-----
Confidence 45 799999999998632 467777876 45777777654 2333322122333321110 0 12234433
Q ss_pred HHHHHHHHHHHhc
Q psy15557 145 IGSMILGVEALLS 157 (207)
Q Consensus 145 lGSi~L~~EAl~~ 157 (207)
-+++..+.+.+.+
T Consensus 96 a~al~~a~~~i~~ 108 (200)
T cd02508 96 ADAIYQNLDYIER 108 (200)
T ss_pred HHHHHHHHHHHHh
Confidence 4667777777654
No 85
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=48.05 E-value=68 Score=29.94 Aligned_cols=101 Identities=12% Similarity=0.266 Sum_probs=63.9
Q ss_pred cEEEEEccCCCCCCcch---hHHHHHHHHHHhhCCCceEEEEcCCCCCCh---hHHHHHHHHhcceeecCCceEEEEcCc
Q psy15557 53 KTVAFFHPYCNAGGGGE---RVLWTAVLALHQKYPDYKIYIYTGDVDASP---SEIIKRAHQRFNIVLPEQAINFVYLYR 126 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGE---RVLW~Ai~alq~~~~~~~~vIYTgd~~~~~---~~il~~a~~rF~i~L~~~~i~FV~Lr~ 126 (207)
.+-|++.|.-+.+ +-+ +.|-.+++|+.+..|+.+++|-....+ +. .-.+++.+++ |.+.|
T Consensus 135 in~Gmlwp~g~~~-~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~-~~~~~~~~f~~l~~~-g~d~D----------- 200 (332)
T PF07745_consen 135 INNGMLWPDGKPS-NWDNLAKLLNAGIKAVREVDPNIKVMLHLANGG-DNDLYRWFFDNLKAA-GVDFD----------- 200 (332)
T ss_dssp GGGESTBTTTCTT--HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TT-SHHHHHHHHHHHHHT-TGG-S-----------
T ss_pred ccccccCcCCCcc-CHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCC-chHHHHHHHHHHHhc-CCCcc-----------
Confidence 4458888887733 444 467788999999999999999875422 22 4577777765 55565
Q ss_pred cceeeCCCCCchhhhhHHHHHHHHHHHHHh-cCCCCEEEECCCccch
Q psy15557 127 RKFVEASLYPYFTLLGQSIGSMILGVEALL-SFQPDIYIDTMGYAFT 172 (207)
Q Consensus 127 r~lve~~~yp~fTLLgQslGSi~L~~EAl~-~~~PDVfIDTmGyaFt 172 (207)
.+--|.||...- ++.++.-.++.|. ++.=+|+|--+|||++
T Consensus 201 --viGlSyYP~w~~---~l~~l~~~l~~l~~ry~K~V~V~Et~yp~t 242 (332)
T PF07745_consen 201 --VIGLSYYPFWHG---TLEDLKNNLNDLASRYGKPVMVVETGYPWT 242 (332)
T ss_dssp --EEEEEE-STTST----HHHHHHHHHHHHHHHT-EEEEEEE---SB
T ss_pred --eEEEecCCCCcc---hHHHHHHHHHHHHHHhCCeeEEEecccccc
Confidence 556677887643 5555555566653 3455788888899998
No 86
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=47.36 E-value=1.3e+02 Score=23.34 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=33.3
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCC--ceEEEEcCCCCCChhHHHHHHHHhccee
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPD--YKIYIYTGDVDASPSEIIKRAHQRFNIV 113 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~--~~~vIYTgd~~~~~~~il~~a~~rF~i~ 113 (207)
..+-|+.|+|... |-.=..++.+++++++ .+++.-+.| .+++++.+-+ +++++.
T Consensus 64 ~~l~f~a~~C~~C----~~~~~~l~~~~~~~~~~~~~vi~i~~d--~~~~~~~~~~-~~~~~~ 119 (173)
T PRK03147 64 VFLNFWGTWCKPC----EKEMPYMNELYPKYKEKGVEIIAVNVD--ETELAVKNFV-NRYGLT 119 (173)
T ss_pred EEEEEECCcCHHH----HHHHHHHHHHHHHhhcCCeEEEEEEcC--CCHHHHHHHH-HHhCCC
Confidence 4578899999877 5445777788877765 344433433 4555555555 545543
No 87
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=47.01 E-value=46 Score=32.40 Aligned_cols=47 Identities=9% Similarity=-0.020 Sum_probs=36.2
Q ss_pred cchhHHHHHHHHHHhhCCCceEEEEcCCC----CCChhHHHHHHHHhccee
Q psy15557 67 GGERVLWTAVLALHQKYPDYKIYIYTGDV----DASPSEIIKRAHQRFNIV 113 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~~~vIYTgd~----~~~~~~il~~a~~rF~i~ 113 (207)
|||+=|-.+|..+.++++--.+++|++.. +-|-+.+.+++++++|+.
T Consensus 80 g~~~~L~~~i~ei~~~~~p~~ifv~~TC~t~iIGdDle~va~~~~~~~gip 130 (457)
T CHL00073 80 NDYEELKRLCLQIKKDRNPSVIVWIGTCTTEIIKMDLEGMAPKLEAEIGIP 130 (457)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEccCcHHhhccCHHHHHHHHHHhhCCC
Confidence 68999999999999998767788887763 236677777777766554
No 88
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=46.44 E-value=79 Score=30.25 Aligned_cols=68 Identities=16% Similarity=0.369 Sum_probs=43.4
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHhcceeecC----CceEEEEcCccceeeCCCCCchhhhhHHHHHHHHHHHHHhcCCC
Q psy15557 85 DYKIYIYTGDVDASPSEIIKRAHQRFNIVLPE----QAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQP 160 (207)
Q Consensus 85 ~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~----~~i~FV~Lr~r~lve~~~yp~fTLLgQslGSi~L~~EAl~~~~P 160 (207)
+-+++.++++ -+++|+.+++ +++|+++++ ..+.++...... .-+...+..+ .+++.+..|
T Consensus 291 ge~~~y~s~e--Es~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~----------~~~~~~~~~i---~~~i~~~~~ 354 (484)
T TIGR02655 291 KERAILFAYE--ESRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPES----------AGLEDHLQII---KSEIADFKP 354 (484)
T ss_pred CCeEEEEEee--CCHHHHHHHH-HHcCCChHHHhhCCcEEEEEccccc----------CChHHHHHHH---HHHHHHcCC
Confidence 5678888887 5999999999 568887752 245655543211 1112222222 466677889
Q ss_pred C-EEEECCC
Q psy15557 161 D-IYIDTMG 168 (207)
Q Consensus 161 D-VfIDTmG 168 (207)
| |.||+..
T Consensus 355 ~~vvIDsi~ 363 (484)
T TIGR02655 355 ARIAIDSLS 363 (484)
T ss_pred CEEEEcCHH
Confidence 8 8999973
No 89
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=46.30 E-value=48 Score=29.16 Aligned_cols=39 Identities=10% Similarity=0.061 Sum_probs=23.7
Q ss_pred cchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHH
Q psy15557 67 GGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAH 107 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~ 107 (207)
|+.+..+..++.++++ +..+.++++...-+.+++.+++.
T Consensus 11 ~~~~~~~~~~~~l~~~--g~~~~v~~t~~~~~a~~~a~~~~ 49 (293)
T TIGR03702 11 ADNEDVREAVGDLRDE--GIQLHVRVTWEKGDAQRYVAEAL 49 (293)
T ss_pred cchhHHHHHHHHHHHC--CCeEEEEEecCCCCHHHHHHHHH
Confidence 4556677777766665 45555555443456677777664
No 90
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=45.92 E-value=69 Score=24.97 Aligned_cols=19 Identities=21% Similarity=0.926 Sum_probs=9.9
Q ss_pred eeccchhhHHHHHHHHHHHH
Q psy15557 3 CCLWTSVVMWLVFLFYSILA 22 (207)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~l~ 22 (207)
||.+ ..-+|.+|+++.+++
T Consensus 14 CC~~-~~~~w~FWlv~~lii 32 (102)
T PF11669_consen 14 CCSY-YYELWYFWLVWVLII 32 (102)
T ss_pred cchh-hHHHHHHHHHHHHHH
Confidence 4533 345677776544433
No 91
>COG2710 NifD Nitrogenase molybdenum-iron protein, alpha and beta chains [Energy production and conversion]
Probab=45.53 E-value=38 Score=32.42 Aligned_cols=48 Identities=19% Similarity=0.381 Sum_probs=37.8
Q ss_pred CCCcchhHHHHHHHHHHhhCCCceEEEEcCCCC----CChhHHHHHHHHhcc
Q psy15557 64 AGGGGERVLWTAVLALHQKYPDYKIYIYTGDVD----ASPSEIIKRAHQRFN 111 (207)
Q Consensus 64 aGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~----~~~~~il~~a~~rF~ 111 (207)
-.||||+.|=.+++.+.+.++..-+.|||++.. =|.+.+.++++..++
T Consensus 90 VfGg~e~~l~~~i~~i~~~~~p~~I~V~sTC~~~iIGDDi~~v~~~~~~~~~ 141 (456)
T COG2710 90 VFGGGEKKLEAAINEIEAYFNPKAIFVYSTCATEIIGDDIEAVVREAEEEIG 141 (456)
T ss_pred EecChHHHHHHHHHHHHhhcCCcEEEEEccccchhccCCHHHHHHHHHHhcC
Confidence 357899999999999999854448999988742 377788888888766
No 92
>cd08412 PBP2_PAO1_like The C-terminal substrate-binding domain of putative LysR-type transcriptional regulator PAO1-like, a member of the type 2 periplasmic binding fold protein superfamily. This family includes the C-terminal substrate domain of a putative LysR-type transcriptional regulator from the plant pathogen Pseudomonas aeruginosa PAO1and its closely related homologs. The LysR-type transcriptional regulators (LTTRs) are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controll
Probab=45.30 E-value=53 Score=24.36 Aligned_cols=36 Identities=14% Similarity=0.257 Sum_probs=29.0
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHH
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAH 107 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~ 107 (207)
++.++-..+.++++++|++++-+++++ .+++.+..+
T Consensus 11 ~~~~l~~~l~~~~~~~P~i~l~i~~~~----~~~~~~~l~ 46 (198)
T cd08412 11 APYYLPGLLRRFREAYPGVEVRVVEGN----QEELEEGLR 46 (198)
T ss_pred chhhhHHHHHHHHHHCCCcEEEEEECC----HHHHHHHHH
Confidence 567888999999999999999999865 455666554
No 93
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=45.10 E-value=46 Score=27.05 Aligned_cols=28 Identities=25% Similarity=0.591 Sum_probs=20.1
Q ss_pred cchhH-------HHHHHHHHHhhCCCceEEEEcCC
Q psy15557 67 GGERV-------LWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 67 GGERV-------LW~Ai~alq~~~~~~~~vIYTgd 94 (207)
|||=. +-..++++++..++..+.+|||-
T Consensus 73 GGEPl~~~~~~~l~~l~~~~k~~~~~~~i~~~tGy 107 (154)
T PRK11121 73 GGDPLHPQNVPDILKLVQRVKAECPGKDIWVWTGY 107 (154)
T ss_pred CCCccchhhHHHHHHHHHHHHHHCCCCCEEEecCC
Confidence 67843 34555666667788899999997
No 94
>PRK05331 putative phosphate acyltransferase; Provisional
Probab=44.86 E-value=2.3e+02 Score=26.26 Aligned_cols=116 Identities=20% Similarity=0.233 Sum_probs=68.7
Q ss_pred CCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhh
Q psy15557 61 YCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTL 140 (207)
Q Consensus 61 ycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTL 140 (207)
++..|-.|.++...|+....+++|+.+++++ || +++|-+.+++ .+++ .+++++|.-.. .++-.--|
T Consensus 7 DamGgD~~p~~vl~aa~~a~~~~~~~~~iLv-G~----~~~I~~~l~~-~~~~--~~~~~Iv~~~~--~i~~~e~p---- 72 (334)
T PRK05331 7 DAMGGDFGPEVVVPGALQALKEHPDLEIILV-GD----EEKIKPLLAK-KPDL--KERIEIVHASE--VIGMDDKP---- 72 (334)
T ss_pred EcCCCccCHHHHHHHHHHHHhcCCCeEEEEE-eC----HHHHHHHHHh-cCCC--cCCcEEEeCCC--cccccccH----
Confidence 4566777889988887766666666776664 66 3455444433 3433 34566665332 22211112
Q ss_pred hhHHH-----HHHHHHHHHHhcCCCCEEEECCCccchHH-----HHHHhCC-CeeEEeeeCcc
Q psy15557 141 LGQSI-----GSMILGVEALLSFQPDIYIDTMGYAFTYP-----LFSYIGG-SKVACYIHYPT 192 (207)
Q Consensus 141 LgQsl-----GSi~L~~EAl~~~~PDVfIDTmGyaFtyP-----l~k~l~g-~~V~~YvHYPt 192 (207)
.+++ -||+.|.+.+.+-.-|..+-. |..-.+. +.+.+.| .|...-.|.|+
T Consensus 73 -~~alR~kk~ssm~~A~~lV~~G~AD~~vSg-g~Tga~l~~a~~ilg~~~Gi~r~a~~~~~p~ 133 (334)
T PRK05331 73 -SQALRRKKDSSMRVALELVKEGEADACVSA-GNTGALMAAALFVLGRLPGIDRPALAAILPT 133 (334)
T ss_pred -HHHHHhcCCChHHHHHHHHhCCCCCEEEeC-CcHHHHHHHHHHHcccCCCCCceEEEEEeee
Confidence 2333 488999999999999999953 3322222 2222334 56777778887
No 95
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=44.55 E-value=1.8e+02 Score=25.84 Aligned_cols=84 Identities=13% Similarity=0.025 Sum_probs=47.2
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhHHHHHHHHHHH
Q psy15557 74 TAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVE 153 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslGSi~L~~E 153 (207)
-++++|+++||++++.+=+.. ...++++.--. +| +.+...+++. ... +....--..
T Consensus 19 P~l~~Lk~~~P~a~I~~l~~~---~~~~l~~~~P~-----vd----~vi~~~~~~~-----~~~-------~~~~~~l~~ 74 (348)
T PRK10916 19 SLYRTLKARYPQAIIDVMAPA---WCRPLLSRMPE-----VN----EAIPMPLGHG-----ALE-------IGERRRLGH 74 (348)
T ss_pred HHHHHHHHHCCCCeEEEEech---hhHHHHhcCCc-----cC----EEEecccccc-----hhh-------hHHHHHHHH
Confidence 378999999999999888754 33444443211 11 1122222211 000 111112235
Q ss_pred HHhcCCCCEEEECCCccchHHHHHHhCCC
Q psy15557 154 ALLSFQPDIYIDTMGYAFTYPLFSYIGGS 182 (207)
Q Consensus 154 Al~~~~PDVfIDTmGyaFtyPl~k~l~g~ 182 (207)
.|.+...|+-||-+|-.-+ -++.++.|.
T Consensus 75 ~lr~~~yD~vidl~~~~~s-~~l~~~~~~ 102 (348)
T PRK10916 75 SLREKRYDRAYVLPNSFKS-ALVPFFAGI 102 (348)
T ss_pred HHHhcCCCEEEECCCcHHH-HHHHHHcCC
Confidence 6788899999999976444 455567664
No 96
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=44.37 E-value=19 Score=25.99 Aligned_cols=49 Identities=20% Similarity=0.348 Sum_probs=34.8
Q ss_pred cchhHHHHHHHHHHhhCCCceEEEE--cCCC------CCChhHHHHHHHHhcceeec
Q psy15557 67 GGERVLWTAVLALHQKYPDYKIYIY--TGDV------DASPSEIIKRAHQRFNIVLP 115 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~~~vIY--Tgd~------~~~~~~il~~a~~rF~i~L~ 115 (207)
+-|.=|+.|++.+.+.+|..++..= ||+. +.--+-++++.+++||+++.
T Consensus 16 ~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~v~ 72 (75)
T PF14492_consen 16 EDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFGVEVE 72 (75)
T ss_dssp HHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEBEE
T ss_pred hHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCeeE
Confidence 4466689999999999987766552 2221 24556789999999998764
No 97
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=44.27 E-value=52 Score=26.05 Aligned_cols=17 Identities=29% Similarity=0.665 Sum_probs=9.9
Q ss_pred eccchhhHHHHHHHHHHHH
Q psy15557 4 CLWTSVVMWLVFLFYSILA 22 (207)
Q Consensus 4 ~~~~~~~~~~~~~~~~~l~ 22 (207)
--|.++-|| |+.++.++
T Consensus 28 n~~~~Lgm~--~lvI~~iF 44 (94)
T PF05393_consen 28 NNWPNLGMW--FLVICGIF 44 (94)
T ss_pred CCCCccchh--HHHHHHHH
Confidence 347778888 44444444
No 98
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=44.03 E-value=55 Score=31.25 Aligned_cols=57 Identities=18% Similarity=0.426 Sum_probs=38.9
Q ss_pred cchhHHHHHHHHHHhhCCCc-eEEEEcCCC----CCChhHHHHHHHHhcceeecCCceEEEEcCccce
Q psy15557 67 GGERVLWTAVLALHQKYPDY-KIYIYTGDV----DASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKF 129 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~-~~vIYTgd~----~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~l 129 (207)
|||+=|=.||+.+.+++|+. -+.|||+.. +-|-+.+.++++++.+ .+.+|+++.-.+
T Consensus 107 Gge~kL~~aI~e~~~~~p~p~~I~V~stC~~~lIGDDi~~v~~e~~~~~~------~~pvv~v~t~gf 168 (457)
T TIGR01284 107 GGEKKLKRCILEAFREFPEIKRMYTYATCTTALIGDDIDAIAREVMEEIP------DVDVFAINAPGF 168 (457)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEECCChHHhhccCHHHHHHHHHHhcC------CCeEEEeeCCCc
Confidence 56777889999999999765 588887763 2366777777777643 134566655444
No 99
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=43.86 E-value=2.5e+02 Score=25.51 Aligned_cols=48 Identities=8% Similarity=0.078 Sum_probs=33.3
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcc
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFN 111 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~ 111 (207)
.+..|++|+++.. .+ .+++.-.++.|+++=+-|- |+||-+++.++.++
T Consensus 67 ~i~vyl~~~~~~~----~~--~~l~~~l~~~~~V~~v~~i-----skeeAl~~l~~~~g 114 (309)
T TIGR00439 67 QITVYLEKALAQS----DA--DTVVSLLTRDKGVENINYI-----SREDGLAEFQSWSG 114 (309)
T ss_pred eEEEEeCCCCCHH----HH--HHHHHHHhCCCCccEEEEE-----CHHHHHHHHHHhcC
Confidence 5778999987654 11 4555555568888877776 56888888877544
No 100
>PF13028 DUF3889: Protein of unknown function (DUF3889)
Probab=43.84 E-value=23 Score=27.90 Aligned_cols=40 Identities=25% Similarity=0.460 Sum_probs=28.1
Q ss_pred HHHHHHhhCCCceEEEE--cCCCCCChhHHHHHHHHhcceeecCCc
Q psy15557 75 AVLALHQKYPDYKIYIY--TGDVDASPSEIIKRAHQRFNIVLPEQA 118 (207)
Q Consensus 75 Ai~alq~~~~~~~~vIY--Tgd~~~~~~~il~~a~~rF~i~L~~~~ 118 (207)
|++.++++||+.+++=| -|+...+.++ ++++|...|..+.
T Consensus 30 A~~~~k~~Yp~a~v~DY~~vGr~~~~~~~----t~e~Fkl~l~~~~ 71 (97)
T PF13028_consen 30 AVQETKEKYPGAEVVDYLYVGRTKVNDEQ----TVEKFKLWLREGG 71 (97)
T ss_pred HHHHHHHHCCCCEEeeeeeecceecCCcc----eEEEEEEEEEcCC
Confidence 66788999999998876 5665555442 5677877776443
No 101
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=43.35 E-value=68 Score=26.54 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=27.3
Q ss_pred eEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCC
Q psy15557 87 KIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYP 136 (207)
Q Consensus 87 ~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp 136 (207)
+++|-|+| .++-++++++ ||.+ ++||+|+.+.-+.++
T Consensus 99 ~~iVaTnD-----~eLk~rlr~~-GIPv-------i~lr~r~~~~ie~~~ 135 (136)
T COG1412 99 RYIVATND-----KELKRRLREN-GIPV-------ITLRQRKLLIIERLS 135 (136)
T ss_pred CEEEEeCC-----HHHHHHHHHc-CCCE-------EEEeCCeEEEeeCCC
Confidence 68888988 7888888886 6544 889977766655443
No 102
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=43.34 E-value=25 Score=26.99 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=19.0
Q ss_pred CCCcchhHHHHHHHHHHhh-CCCceEEEEcCCCC-------------CChhHHHHHHHH
Q psy15557 64 AGGGGERVLWTAVLALHQK-YPDYKIYIYTGDVD-------------ASPSEIIKRAHQ 108 (207)
Q Consensus 64 aGGGGERVLW~Ai~alq~~-~~~~~~vIYTgd~~-------------~~~~~il~~a~~ 108 (207)
+||+||++. . +++++ ..+.+++-|-.|.+ -+.+++.+.+++
T Consensus 85 ~~~~~~~~~-~---~l~~~~~~g~~vvg~~d~~~~~~~~~~~~~~~lg~~~~l~~~~~~ 139 (175)
T PF13727_consen 85 AGGAGRELA-E---ALRSNPRLGYRVVGFVDDDPSDRGPEIDGVPVLGDLDDLPELVRE 139 (175)
T ss_dssp -SHHHHHHH-H---HHHH--SSSEEEEEEE-S-GGGTT-EETTEEEE--GGGHHHHHHH
T ss_pred EechHHHHH-H---HHHhhhhcCceEEEEEeCchhhccCcccCceeEcCHHHHHHHHHh
Confidence 666777655 4 44432 22445555543322 134666666666
No 103
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=43.30 E-value=63 Score=29.51 Aligned_cols=45 Identities=22% Similarity=0.431 Sum_probs=31.9
Q ss_pred cchhHHHHHHHHHHhhCCCceEEEEcCCC----CCChhHHHHHHHHhcc
Q psy15557 67 GGERVLWTAVLALHQKYPDYKIYIYTGDV----DASPSEIIKRAHQRFN 111 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~~~vIYTgd~----~~~~~~il~~a~~rF~ 111 (207)
|||.-|=.||+.+.++++---++|+|+.. +-|-+.+.++++++++
T Consensus 70 Gg~~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~ 118 (406)
T cd01967 70 GGEKKLKKAIKEAYERFPPKAIFVYSTCPTGLIGDDIEAVAKEASKELG 118 (406)
T ss_pred CcHHHHHHHHHHHHHhCCCCEEEEECCCchhhhccCHHHHHHHHHHhhC
Confidence 34777779999999887444677887763 2366777788777654
No 104
>PTZ00370 STEVOR; Provisional
Probab=43.01 E-value=31 Score=32.23 Aligned_cols=22 Identities=14% Similarity=0.632 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q psy15557 27 LIIVLPISVLLFKYYVSKKRKS 48 (207)
Q Consensus 27 l~~~l~~~~~~~r~~~~~k~~~ 48 (207)
.++++.|+++++--|++++||+
T Consensus 263 vllil~vvliilYiwlyrrRK~ 284 (296)
T PTZ00370 263 VLLILAVVLIILYIWLYRRRKN 284 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 3344445577788899888873
No 105
>PRK04457 spermidine synthase; Provisional
Probab=42.89 E-value=70 Score=28.11 Aligned_cols=49 Identities=10% Similarity=0.151 Sum_probs=30.3
Q ss_pred HHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCcccee
Q psy15557 77 LALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFV 130 (207)
Q Consensus 77 ~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lv 130 (207)
+.+.+.+|+.+++.---| +++++.|++.|+..-+.++++++.=..+.++
T Consensus 82 ~~l~~~~p~~~v~~VEid-----p~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l 130 (262)
T PRK04457 82 KFIYTYLPDTRQTAVEIN-----PQVIAVARNHFELPENGERFEVIEADGAEYI 130 (262)
T ss_pred HHHHHhCCCCeEEEEECC-----HHHHHHHHHHcCCCCCCCceEEEECCHHHHH
Confidence 344556787776654433 6789999999875432256777654444433
No 106
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=42.18 E-value=2.3e+02 Score=25.22 Aligned_cols=103 Identities=16% Similarity=0.218 Sum_probs=54.8
Q ss_pred EEEEccCCCCCCcchhHHH-HHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCce-EEEEcCccceeeC
Q psy15557 55 VAFFHPYCNAGGGGERVLW-TAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAI-NFVYLYRRKFVEA 132 (207)
Q Consensus 55 VgFFHPycnaGGGGERVLW-~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i-~FV~Lr~r~lve~ 132 (207)
|-+..+.. . |+=|+- -++++|.++||++++.+-+.. ...++++. + ..| +++...+++.
T Consensus 8 ILii~~~~-i---GD~vl~~P~l~~Lk~~~P~a~I~~l~~~---~~~~l~~~---------~-P~id~vi~~~~~~~--- 67 (352)
T PRK10422 8 ILIIKMRF-H---GDMLLTTPVISSLKKNYPDAKIDVLLYQ---DTIPILSE---------N-PEINALYGIKNKKA--- 67 (352)
T ss_pred EEEEEecc-c---CceeeHHHHHHHHHHHCCCCeEEEEecc---ChHHHhcc---------C-CCceEEEEeccccc---
Confidence 55555432 2 344443 478999999999999988865 22334432 1 122 2232322210
Q ss_pred CCCCchhhhhHHHHHHHHHHHHHhcCCCCEEEECCCccchHHHHHHhCCC--eeE
Q psy15557 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGS--KVA 185 (207)
Q Consensus 133 ~~yp~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyPl~k~l~g~--~V~ 185 (207)
.. ...+...+--+..|.+...|+.||.++..-+ -++.++.|. ||+
T Consensus 68 --~~-----~~~~~~~~~l~~~lr~~~yD~vidl~~~~~s-~ll~~l~~a~~rig 114 (352)
T PRK10422 68 --GA-----SEKIKNFFSLIKVLRANKYDLIVNLTDQWMV-ALLVRLLNARVKIS 114 (352)
T ss_pred --cH-----HHHHHHHHHHHHHHhhCCCCEEEEcccchHH-HHHHHHhCCCeEEe
Confidence 00 0112222223456788899999999975433 444445553 444
No 107
>cd08436 PBP2_LTTR_like_3 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functi
Probab=41.85 E-value=67 Score=23.63 Aligned_cols=37 Identities=11% Similarity=0.225 Sum_probs=28.2
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
++.++-.+++++++++|++++-+.+++ .+++.+..++
T Consensus 11 ~~~~l~~~l~~~~~~~P~v~i~i~~~~----~~~~~~~l~~ 47 (194)
T cd08436 11 AAVDLPELLARFHRRHPGVDIRLRQAG----SDDLLAAVRE 47 (194)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEecCC----HHHHHHHHHc
Confidence 457888999999999999999998754 3455555543
No 108
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=41.77 E-value=60 Score=31.19 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=33.9
Q ss_pred cchhHHHHHHHHHHhhCCC-ceEEEEcCCC----CCChhHHHHHHHHhcc
Q psy15557 67 GGERVLWTAVLALHQKYPD-YKIYIYTGDV----DASPSEIIKRAHQRFN 111 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~-~~~vIYTgd~----~~~~~~il~~a~~rF~ 111 (207)
|||+=|=.||+.+.++|+. --+.|||+.. +-|-+.+.++++++.+
T Consensus 114 GGe~kL~~aI~e~~~~~~P~~~I~V~tTC~~~lIGDDi~av~~~~~~~~~ 163 (466)
T TIGR01282 114 GGDKKLKKAIDEIEELFPLNKGISIQSECPVGLIGDDIEAVAKKASKELG 163 (466)
T ss_pred CcHHHHHHHHHHHHHhCCcccEEEEeCCChHHHhccCHHHHHHHHhhhcC
Confidence 3566678999999999865 5688998764 2377788888887654
No 109
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=41.71 E-value=63 Score=30.55 Aligned_cols=45 Identities=22% Similarity=0.466 Sum_probs=33.2
Q ss_pred cchhHHHHHHHHHHhhCCCceEEEEcCCC----CCChhHHHHHHHHhcc
Q psy15557 67 GGERVLWTAVLALHQKYPDYKIYIYTGDV----DASPSEIIKRAHQRFN 111 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~~~vIYTgd~----~~~~~~il~~a~~rF~ 111 (207)
|||.=|=.||+.+.++++---++|||+.. +-|-+.+.++++++.+
T Consensus 104 Gg~~kL~~~I~e~~~~~~P~~I~V~ttC~~~lIGdDi~~v~~e~~~~~~ 152 (456)
T TIGR01283 104 GGEKKLFHAIREIVERYHPPAVFVYSTCVPGLIGDDLEAVCKAAAEKTG 152 (456)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEECCChHHHhcCCHHHHHHHHHHHhC
Confidence 36777779999999987555678888764 2477778888887654
No 110
>PF09183 DUF1947: Domain of unknown function (DUF1947); InterPro: IPR015266 Members of this entry are a set of hypothetical archaeal proteins. Their exact function has not, as yet, been defined. ; PDB: 1Q7H_A.
Probab=41.53 E-value=26 Score=26.02 Aligned_cols=31 Identities=10% Similarity=0.173 Sum_probs=18.4
Q ss_pred ChhHHHHHHHHhcceeecCCceEEEEcCccc
Q psy15557 98 SPSEIIKRAHQRFNIVLPEQAINFVYLYRRK 128 (207)
Q Consensus 98 ~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~ 128 (207)
+..+++++++++.||++.++.|+...-++..
T Consensus 9 e~k~~~~k~~~~ygIdi~~~~vEI~~~kk~~ 39 (65)
T PF09183_consen 9 EIKEIKEKIKEKYGIDISGEKVEIGKEKKFS 39 (65)
T ss_dssp HHHHHHHHHHT-TT---TT---EEEE-SS-E
T ss_pred HHHHHHHHHHHHhCcCCCccceeeeeccceE
Confidence 5678999999999999997788888776644
No 111
>cd08416 PBP2_MdcR The C-terminal substrate-binding domian of LysR-type transcriptional regulator MdcR, which involved in the malonate catabolism contains the type 2 periplasmic binding fold. This family includes the C-terminal substrate binding domain of LysR-type transcriptional regulator (LTTR) MdcR that controls the expression of the malonate decarboxylase (mdc) genes. Like other members of the LTTRs, MdcR is a positive regulatory protein for its target promoter and composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins (PBP2). The PBP2 are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these dom
Probab=41.45 E-value=1.5e+02 Score=22.07 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=24.3
Q ss_pred cchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 67 GGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
.+..++-.++..+++++|++++-+++++
T Consensus 10 ~~~~~l~~~l~~~~~~~P~i~l~i~~~~ 37 (199)
T cd08416 10 LTVNTVPRIIMGLKLRRPELDIELTLGS 37 (199)
T ss_pred HHHhhhHHHHHHHHHhCCCeEEEEEEcC
Confidence 4467888999999999999999999865
No 112
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=41.31 E-value=89 Score=29.91 Aligned_cols=60 Identities=22% Similarity=0.407 Sum_probs=38.4
Q ss_pred cchhHHHHHHHHHHhhCCC-ceEEEEcCCC----CCChhHHHHHHHHhcceeecCCceEEEEcCc
Q psy15557 67 GGERVLWTAVLALHQKYPD-YKIYIYTGDV----DASPSEIIKRAHQRFNIVLPEQAINFVYLYR 126 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~-~~~vIYTgd~----~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~ 126 (207)
|||+=|=.||+.+.+++|+ --++|+|+.. +-|-+.+.++++++++-+.+...+..|+++.
T Consensus 69 GG~~~L~~~I~~~~~~~~~p~~I~V~tTC~~eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~t 133 (454)
T cd01973 69 GGAKRVEEGVLVLARRYPDLRVIPIITTCSTEIIGDDIEGVIRKLNEALKEEFPDREVHLIPVHT 133 (454)
T ss_pred CcHHHHHHHHHHHHHhcCCCCEEEEECCchHhhhccCHHHHHHHHHhhhhhccCCCCCeEEEeeC
Confidence 4555566999999999964 4577887752 2366777788877654333322445555544
No 113
>cd08450 PBP2_HcaR The C-terminal substrate binding domain of LysR-type transcriptional regulator HcaR in involved in 3-phenylpropionic acid catabolism, contains the type2 periplasmic binding fold. HcaR, a member of the LysR family of transcriptional regulators, controls the expression of the hcA1, A2, B, C, and D operon, encoding for the 3-phenylpropionate dioxygenase complex and 3-phenylpropionate-2',3'-dihydrodiol dehydrogenase, that oxidizes 3-phenylpropionate to 3-(2,3-dihydroxyphenyl) propionate. Dioxygenases play an important role in protecting the cell against the toxic effects of dioxygen. The expression of hcaR is negatively auto-regulated, as for other members of the LysR family, and is strongly repressed in the presence of glucose. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, an
Probab=41.25 E-value=1.2e+02 Score=22.45 Aligned_cols=37 Identities=11% Similarity=0.092 Sum_probs=28.0
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
+..++-.+++.+++++|++++-+.++. .+++.++.++
T Consensus 11 ~~~~l~~~l~~~~~~~P~i~l~i~~~~----~~~~~~~l~~ 47 (196)
T cd08450 11 EVQWLPEVLPILREEHPDLDVELSSLF----SPQLAEALMR 47 (196)
T ss_pred hhhhHHHHHHHHHhhCCCcEEEEEecC----hHHHHHHHhc
Confidence 446788999999999999999998764 3455555543
No 114
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=40.97 E-value=47 Score=28.83 Aligned_cols=39 Identities=18% Similarity=0.297 Sum_probs=29.3
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeec
Q psy15557 74 TAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLP 115 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~ 115 (207)
.|+++++++ +.++++-|+....+++++.++.++ .|++++
T Consensus 28 ~al~~l~~~--G~~~~~~Tn~~~~~~~~~~~~l~~-~g~~~~ 66 (257)
T TIGR01458 28 EAVKRLRGA--SVKVRFVTNTTKESKQDLLERLQR-LGFDIS 66 (257)
T ss_pred HHHHHHHHC--CCeEEEEECCCCCCHHHHHHHHHH-cCCCCC
Confidence 455555554 889999999877788899998866 676654
No 115
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=40.94 E-value=55 Score=28.20 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=29.9
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeec
Q psy15557 74 TAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLP 115 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~ 115 (207)
.|++.++++ +.++++-|+....+++++.++.++ .|++.+
T Consensus 24 ~~l~~l~~~--g~~~~~~Tnn~~r~~~~~~~~l~~-~g~~~~ 62 (249)
T TIGR01457 24 TFVHELQKR--DIPYLFVTNNSTRTPESVAEMLAS-FDIPAT 62 (249)
T ss_pred HHHHHHHHC--CCeEEEEeCCCCCCHHHHHHHHHH-cCCCCC
Confidence 556666665 788999998877889999888876 777665
No 116
>PRK10125 putative glycosyl transferase; Provisional
Probab=40.75 E-value=41 Score=31.13 Aligned_cols=31 Identities=19% Similarity=0.045 Sum_probs=21.3
Q ss_pred CCCcchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 64 AGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 64 aGGGGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
++||.||+.=.-.+.++++--+..++.-+++
T Consensus 11 ~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~ 41 (405)
T PRK10125 11 AEGGAAGVALDLHQRALQQGLASHFVYGYGK 41 (405)
T ss_pred cCCchhHHHHHHHHHHHhcCCeEEEEEecCC
Confidence 4679999999999999887433443333444
No 117
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=40.67 E-value=74 Score=25.66 Aligned_cols=35 Identities=26% Similarity=0.595 Sum_probs=20.5
Q ss_pred cchhHH-------HHHHHHHHhhCCCceEEEEcCCCCCChhHHHH
Q psy15557 67 GGERVL-------WTAVLALHQKYPDYKIYIYTGDVDASPSEIIK 104 (207)
Q Consensus 67 GGERVL-------W~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~ 104 (207)
|||=.+ ...++.+.++.+...+.+|||- +.+++++
T Consensus 71 GGEPllq~~~~~l~~ll~~~k~~~~~~~~~~~tG~---~~~~~~~ 112 (154)
T TIGR02491 71 GGDPLYPRNVEELIELVKKIKAEFPEKDIWLWTGY---TWEEILE 112 (154)
T ss_pred ChhhCCCCCHHHHHHHHHHHHHhCCCCCEEEeeCc---cHHHHhc
Confidence 677554 3444444444444568888886 4455654
No 118
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=40.53 E-value=72 Score=29.72 Aligned_cols=67 Identities=15% Similarity=0.268 Sum_probs=42.0
Q ss_pred EEccCCCCCCcchhHHHHHHHHHHhhCCCc-eEEEEcCCC----CCChhHHHHHHHHhcceeecCCceEEEEcCcccee
Q psy15557 57 FFHPYCNAGGGGERVLWTAVLALHQKYPDY-KIYIYTGDV----DASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFV 130 (207)
Q Consensus 57 FFHPycnaGGGGERVLW~Ai~alq~~~~~~-~~vIYTgd~----~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lv 130 (207)
-++-.--.=|| |.=|=.||+.+-+++|+. -+.|+|+.. +-|-+.+.++++++.+ .+.+|++..-.+.
T Consensus 61 ~l~E~d~VfGg-~~~L~~aI~~~~~~~p~p~~i~V~~tc~~~liGdDi~~v~~~~~~~~~------~~~vi~v~tpgf~ 132 (415)
T cd01977 61 DMKESHVVFGG-EKKLKKNIIEAFKEFPDIKRMTVYTTCTTALIGDDIKAVAKEVMEELP------DVDIFVCNAPGFA 132 (415)
T ss_pred cCCccceeecc-HHHHHHHHHHHHHhCCCCcEEEEECCCchhhhcCCHHHHHHHHHHhcC------CCeEEEEeCCCcC
Confidence 33444444555 555569999999898764 477887663 2477778888887654 1345665554443
No 119
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=40.49 E-value=72 Score=29.54 Aligned_cols=45 Identities=27% Similarity=0.600 Sum_probs=32.7
Q ss_pred cchhHHHHHHHHHHhhCCCceEEEEcCCC----CCChhHHHHHHHHhcc
Q psy15557 67 GGERVLWTAVLALHQKYPDYKIYIYTGDV----DASPSEIIKRAHQRFN 111 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~~~vIYTgd~----~~~~~~il~~a~~rF~ 111 (207)
|||.-|=.||+.+.++++---++|+|+.. +-|-+.+.++++++.+
T Consensus 69 Gg~~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~ 117 (410)
T cd01968 69 GGEKKLYKAILEIIERYHPKAVFVYSTCVVALIGDDIDAVCKTASEKFG 117 (410)
T ss_pred ccHHHHHHHHHHHHHhCCCCEEEEECCCchhhhccCHHHHHHHHHHhhC
Confidence 34667779999999986544677887764 2477788888887754
No 120
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=39.70 E-value=2.4e+02 Score=24.01 Aligned_cols=81 Identities=15% Similarity=0.090 Sum_probs=42.4
Q ss_pred cchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhHHHH
Q psy15557 67 GGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIG 146 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslG 146 (207)
||.-++.-++++.++...-.+++| ++| .++|.+.+++ +|.+. +++|...+.++.. + ..-
T Consensus 22 ~GkpLi~~ti~~a~~s~~~d~IvV-std----~~~i~~~a~~-~g~~v-------~~~r~~~l~~d~~-~-------~~~ 80 (222)
T TIGR03584 22 CGKPMIAYSIEAALNSGLFDKVVV-STD----DEEIAEVAKS-YGASV-------PFLRPKELADDFT-G-------TAP 80 (222)
T ss_pred CCcCHHHHHHHHHHhCCCCCEEEE-eCC----CHHHHHHHHH-cCCEe-------EEeChHHHcCCCC-C-------chH
Confidence 356788888888877533335555 444 2677776664 44322 3345555444322 1 123
Q ss_pred HHHHHHHHHhc-CCCCEEEECCC
Q psy15557 147 SMILGVEALLS-FQPDIYIDTMG 168 (207)
Q Consensus 147 Si~L~~EAl~~-~~PDVfIDTmG 168 (207)
|+.-|++.+.+ -.+|.++..++
T Consensus 81 si~~~l~~l~~~~~~d~v~~l~~ 103 (222)
T TIGR03584 81 VVKHAIEELKLQKQYDHACCIYA 103 (222)
T ss_pred HHHHHHHHHhhcCCCCEEEEecC
Confidence 44445555532 23576665553
No 121
>cd08466 PBP2_LeuO The C-terminal substrate binding domain of LysR-type transcriptional regulator LeuO, an activator of leucine synthesis operon, contains the type 2 periplasmic binding fold. LeuO, a LysR-type transcriptional regulator, was originally identified as an activator of the leucine synthesis operon (leuABCD). Subsequently, LeuO was found to be not a specific regulator of the leu gene but a global regulator of unrelated various genes. LeuO activates bglGFB (utilization of beta-D-glucoside) and represses cadCBA (lysine decarboxylation) and dsrA (encoding a regulatory small RNA for translational control of rpoS and hns). LeuO also regulates the yjjQ-bglJ operon which coding for a LuxR-type transcription factor. In Salmonella enterica serovar Typhi, LeuO is a positive regulator of ompS1 (encoding an outer membrane), ompS2 (encoding a pathogenicity determinant), and assT, while LeuO represses the expression of OmpX and Tpx. Both osmS1 and osmS2 influence virulence in the mouse mo
Probab=39.40 E-value=72 Score=23.87 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=27.3
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHH
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAH 107 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~ 107 (207)
+..++-.+++++++++|++++-+++++ .+++.+..+
T Consensus 11 ~~~~l~~~l~~f~~~~P~v~l~~~~~~----~~~~~~~l~ 46 (200)
T cd08466 11 DLLLLPRLLARLKQLAPNISLRESPSS----EEDLFEDLR 46 (200)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEecCc----hHhHHHHHH
Confidence 346788899999999999999999875 344455444
No 122
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=39.36 E-value=58 Score=26.58 Aligned_cols=41 Identities=32% Similarity=0.404 Sum_probs=27.3
Q ss_pred cchhHHHHHHHHHHhh--CCCceEEEEcCCCCCChhHHHHHHHHhcc
Q psy15557 67 GGERVLWTAVLALHQK--YPDYKIYIYTGDVDASPSEIIKRAHQRFN 111 (207)
Q Consensus 67 GGERVLW~Ai~alq~~--~~~~~~vIYTgd~~~~~~~il~~a~~rF~ 111 (207)
||| ....++..+.+. ..+.++.++||- +.+++.++..+..+
T Consensus 69 GGE-l~~~~l~~ll~~lk~~Gl~i~l~Tg~---~~~~~~~~il~~iD 111 (147)
T TIGR02826 69 GGE-WNREALLSLLKIFKEKGLKTCLYTGL---EPKDIPLELVQHLD 111 (147)
T ss_pred chh-cCHHHHHHHHHHHHHCCCCEEEECCC---CCHHHHHHHHHhCC
Confidence 899 877777666643 236789999984 45556666655444
No 123
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=39.15 E-value=71 Score=30.59 Aligned_cols=47 Identities=19% Similarity=0.379 Sum_probs=33.4
Q ss_pred CCCCcchhHHHHHHHHHHhhCCCc-eEEEEcCCC----CCChhHHHHHHHHhc
Q psy15557 63 NAGGGGERVLWTAVLALHQKYPDY-KIYIYTGDV----DASPSEIIKRAHQRF 110 (207)
Q Consensus 63 naGGGGERVLW~Ai~alq~~~~~~-~~vIYTgd~----~~~~~~il~~a~~rF 110 (207)
-.=| ||+=|=.||+.+-+++|+. -+.|||+.. +-|-+.+.++++++.
T Consensus 106 ~VfG-g~~kL~~aI~~~~~~~~~p~~I~V~tTC~~elIGDDi~~v~~~~~~~~ 157 (461)
T TIGR01860 106 VVFG-GEKQLEKSIHEAFDEFPDIKRMIVYTTCPTALIGDDIKAVAKKVQKEL 157 (461)
T ss_pred eeeC-cHHHHHHHHHHHHHhCCCCCEEEEEccCchhhhcCCHHHHHHHHHHhc
Confidence 3344 4666779999999998754 578887763 236677778887764
No 124
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=39.12 E-value=73 Score=29.99 Aligned_cols=53 Identities=15% Similarity=0.168 Sum_probs=36.0
Q ss_pred EccCCCCCCcchhHHHHHHHHHHhhCCC-ceEEEEcCCC----CCChhHHHHHHHHhcc
Q psy15557 58 FHPYCNAGGGGERVLWTAVLALHQKYPD-YKIYIYTGDV----DASPSEIIKRAHQRFN 111 (207)
Q Consensus 58 FHPycnaGGGGERVLW~Ai~alq~~~~~-~~~vIYTgd~----~~~~~~il~~a~~rF~ 111 (207)
++-.--.=|| |+=|=.||+.+.++|+. --+.|+|+.. +-|-+.+.++++++.+
T Consensus 73 l~E~dvVfGg-~~kL~~~I~~~~~~~~p~~~I~V~tTC~~~iIGdDi~~v~~~~~~~~~ 130 (421)
T cd01976 73 FQEKDIVFGG-DKKLAKAIDEAYELFPLNKGISVQSECPVGLIGDDIEAVARKASKELG 130 (421)
T ss_pred CCccceecCC-HHHHHHHHHHHHHhCCCccEEEEECCChHHHhccCHHHHHHHHHHhhC
Confidence 3333334344 55667999999999864 5588888764 2377788888887643
No 125
>PRK12361 hypothetical protein; Provisional
Probab=39.00 E-value=1.2e+02 Score=29.28 Aligned_cols=54 Identities=11% Similarity=0.158 Sum_probs=34.2
Q ss_pred CccEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 51 VLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 51 ~~~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
+++..-+.+|.++.| .++|. |..++...++. .++.++.+..+-+.+++.+++.+
T Consensus 242 ~~~~~iI~NP~SG~g-~~~~~-~~~i~~~L~~~--~~~~v~~t~~~~~a~~la~~~~~ 295 (547)
T PRK12361 242 HKRAWLIANPVSGGG-KWQEY-GEQIQRELKAY--FDLTVKLTTPEISAEALAKQARK 295 (547)
T ss_pred CCceEEEECCCCCCC-cHHHH-HHHHHHHHhcC--CceEEEECCCCccHHHHHHHHHh
Confidence 345677899988665 34555 67766665553 45555555445567888877753
No 126
>cd08452 PBP2_AlsR The C-terminal substrate binding domain of LysR-type trnascriptional regulator AlsR, which regulates acetoin formation under stationary phase growth conditions; contains the type 2 periplasmic binding fold. AlsR is responsible for activating the expression of the acetoin operon (alsSD) in response to inducing signals such as glucose and acetate. Like many other LysR family proteins, AlsR is transcribed divergently from the alsSD operon. The alsS gene encodes acetolactate synthase, an enzyme involved in the production of acetoin in cells of stationary-phase. AlsS catalyzes the conversion of two pyruvate molecules to acetolactate and carbon dioxide. Acetolactate is then converted to acetoin at low pH by acetolactate decarboxylase which encoded by the alsD gene. Acetoin is an important physiological metabolite excreted by many microorganisms grown on glucose or other fermentable carbon sources. This substrate-binding domain shows significant homology to the type 2 perip
Probab=38.88 E-value=71 Score=24.17 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=29.5
Q ss_pred cchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 67 GGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
-+..++-..+++++++||++++-+.+++ .+++.+..++
T Consensus 10 ~~~~~l~~~l~~~~~~~P~v~i~i~~~~----~~~~~~~l~~ 47 (197)
T cd08452 10 AIYEFLPPIVREYRKKFPSVKVELRELS----SPDQVEELLK 47 (197)
T ss_pred HHHhHHHHHHHHHHHHCCCcEEEEEecC----hHHHHHHHHC
Confidence 3457888999999999999999998764 3556666654
No 127
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=38.70 E-value=1.6e+02 Score=28.60 Aligned_cols=54 Identities=13% Similarity=0.322 Sum_probs=32.5
Q ss_pred CccEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHH
Q psy15557 51 VLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRA 106 (207)
Q Consensus 51 ~~~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a 106 (207)
.++..-|.+|.++.| .++++.+..++.+.++. +..+.++.+...-+..++.+++
T Consensus 111 ~kr~lvIvNP~SGkg-~a~k~~~~~v~~~L~~~-gi~~~v~~T~~~ghA~~la~~~ 164 (481)
T PLN02958 111 PKRLLVFVNPFGGKK-SASKIFFDVVKPLLEDA-DIQLTIQETKYQLHAKEVVRTM 164 (481)
T ss_pred CcEEEEEEcCCCCCc-chhHHHHHHHHHHHHHc-CCeEEEEeccCccHHHHHHHHh
Confidence 345667899988776 56788777787555442 4455555443333455555554
No 128
>cd08486 PBP2_CbnR The C-terminal substrate binding domain of LysR-type transcriptional regulator, CbnR, involved in the chlorocatechol catabolism, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of LysR-type regulator CbnR which is involved in the regulation of chlorocatechol breakdown. The chlorocatechol-degradative pathway is often found in bacteria that can use chlorinated aromatic compounds as carbon and energy sources. CbnR is found in the 3-chlorobenzoate degradative bacterium Ralstonia eutropha NH9 and forms a tetramer. CbnR activates the expression of the cbnABCD genes, which are responsible for the degradation of chlorocatechol converted from 3-chlorobenzoate and are transcribed divergently from cbnR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccha
Probab=38.17 E-value=1.1e+02 Score=23.38 Aligned_cols=46 Identities=17% Similarity=0.122 Sum_probs=34.8
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
.+||..+..+ ..++=.+++++++++|++.+-+.++ +.+++.+..++
T Consensus 3 l~Ig~~~~~~------~~~l~~~l~~f~~~~P~v~i~i~~~----~~~~l~~~l~~ 48 (198)
T cd08486 3 LSVAYFGTPI------YRSLPLLLRAFLTSTPTATVSLTHM----TKDEQVEGLLA 48 (198)
T ss_pred EEEEEechhh------HHHHHHHHHHHHHhCCCeEEEEEEC----CHHHHHHHHHc
Confidence 4567666543 4677899999999999999999875 34677777764
No 129
>PLN02645 phosphoglycolate phosphatase
Probab=38.12 E-value=62 Score=28.90 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=31.4
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCc
Q psy15557 74 TAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQA 118 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~ 118 (207)
.+++.++++ +.++++-|+....++++++++.++ +|++.+++.
T Consensus 51 e~l~~lr~~--g~~~~~~TN~~~~~~~~~~~~l~~-lGi~~~~~~ 92 (311)
T PLN02645 51 ETLDMLRSM--GKKLVFVTNNSTKSRAQYGKKFES-LGLNVTEEE 92 (311)
T ss_pred HHHHHHHHC--CCEEEEEeCCCCCCHHHHHHHHHH-CCCCCChhh
Confidence 455555555 889999999888899999999854 787665433
No 130
>KOG1365|consensus
Probab=38.06 E-value=5.8 Score=38.70 Aligned_cols=22 Identities=45% Similarity=0.853 Sum_probs=20.0
Q ss_pred cEEEEEccCCCCCCcchhHHHH
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWT 74 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~ 74 (207)
.+++||||.|--+||-|.||..
T Consensus 177 dVv~FF~~~cpv~~g~egvLFV 198 (508)
T KOG1365|consen 177 DVVEFFGPPCPVTGGTEGVLFV 198 (508)
T ss_pred HHHHhcCCCCcccCCccceEEE
Confidence 5789999999999999999973
No 131
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=37.99 E-value=76 Score=29.69 Aligned_cols=46 Identities=17% Similarity=0.328 Sum_probs=32.6
Q ss_pred cchhHHHHHHHHHHhhCCCceEEEEcCCC----CCChhHHHHHHHHhcce
Q psy15557 67 GGERVLWTAVLALHQKYPDYKIYIYTGDV----DASPSEIIKRAHQRFNI 112 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~~~vIYTgd~----~~~~~~il~~a~~rF~i 112 (207)
|||.=|=.||+.+.++++---++|+|+.. +-|-+.+.++++++.++
T Consensus 72 Gg~~kL~~aI~~~~~~~~P~~I~V~ttC~~~iIGdDi~~v~~~~~~~~~~ 121 (426)
T cd01972 72 GGEKKLEDTIKEAYSRYKPKAIFVATSCATGIIGDDVESVVEELEDEIGI 121 (426)
T ss_pred chHHHHHHHHHHHHHhCCCCEEEEECCChHHHhccCHHHHHHHHHHhhCC
Confidence 44666779999999887545678887763 23667778888877543
No 132
>cd08437 PBP2_MleR The substrate binding domain of LysR-type transcriptional regulator MleR which required for malolactic fermentation, contains type 2 periplasmic binidning fold. MleR, a transcription activator of malolactic fermentation system, is found in gram-positive bacteria and belongs to the lysR family of bacterial transcriptional regulators. The mleR gene is required for the expression and induction of malolactic fermentation. This substrate binding domain has significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase dom
Probab=37.88 E-value=1.7e+02 Score=21.83 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH-hcceee-------cCCceEEEEcCccc
Q psy15557 69 ERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ-RFNIVL-------PEQAINFVYLYRRK 128 (207)
Q Consensus 69 ERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~-rF~i~L-------~~~~i~FV~Lr~r~ 128 (207)
..++=..+.++++++|++++-+++++ .+++.+..++ +.++-+ +++.+++..|...+
T Consensus 12 ~~~l~~~l~~~~~~~P~v~i~~~~~~----~~~~~~~l~~g~~Dl~i~~~~~~~~~~~l~~~~l~~~~ 75 (198)
T cd08437 12 NYYFPKLAKDLIKTGLMIQIDTYEGG----SAELLEQLLQGDLDIALLGSLTPLENSALHSKIIKTQH 75 (198)
T ss_pred HHHhHHHHHHHHHhCCceEEEEEEcC----HHHHHHHHHcCCCCEEEecCCCCCCcccceEEEeecce
Confidence 45667889999999999999998764 4566665554 333322 22346666665544
No 133
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=37.21 E-value=79 Score=28.73 Aligned_cols=49 Identities=33% Similarity=0.409 Sum_probs=36.7
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEc-CCCCCCh-hHHHHHHHH
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYT-GDVDASP-SEIIKRAHQ 108 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYT-gd~~~~~-~~il~~a~~ 108 (207)
..|.|+ ||-+-|+=.|.+.+|+++|+++++-+. |-.+.+. +.|++++++
T Consensus 109 ~~vfll-------Ggkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~ 159 (253)
T COG1922 109 KRVFLL-------GGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAA 159 (253)
T ss_pred ceEEEe-------cCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHh
Confidence 567776 688889999999999999999999876 5433222 356666655
No 134
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=37.03 E-value=3.3e+02 Score=24.86 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=26.1
Q ss_pred ccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 59 HPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 59 HPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
.|....| |=+.|....-+||+++ ++.+.|-|-.
T Consensus 10 ~p~~k~G-Gl~~~~~~L~~aL~~~--G~~V~Vi~p~ 42 (476)
T cd03791 10 APFAKTG-GLGDVVGALPKALAKL--GHDVRVIMPK 42 (476)
T ss_pred cccccCC-cHHHHHHHHHHHHHHC--CCeEEEEecC
Confidence 6777777 7778999999999987 6777776643
No 135
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=36.99 E-value=1.9e+02 Score=25.38 Aligned_cols=93 Identities=20% Similarity=0.201 Sum_probs=49.3
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCce-EEEEcCccceeeCCCCCchhhhhHHHHHHHHHH
Q psy15557 74 TAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAI-NFVYLYRRKFVEASLYPYFTLLGQSIGSMILGV 152 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i-~FV~Lr~r~lve~~~yp~fTLLgQslGSi~L~~ 152 (207)
-++++++++|||+++.+-+.. .-+++++ .+ ..| +++....+++-.+ .+. .+......--.
T Consensus 19 p~~~~lk~~~P~a~I~~l~~~---~~~~l~~---------~~-p~vd~vi~~~~~~~~~~----~~~--~~~~~~~~~~~ 79 (322)
T PRK10964 19 PALTDAQQAIPGIQFDWVVEE---GFAQIPS---------WH-PAVDRVIPVAIRRWRKA----WFS--APIRAERKAFR 79 (322)
T ss_pred HHHHHHHHhCCCCEEEEEECH---HHHHHHh---------cC-CCccEEEeechhHhhhc----ccc--hhHHHHHHHHH
Confidence 478899999999999887753 1222322 11 223 3444433322111 011 11111222223
Q ss_pred HHHhcCCCCEEEECCCccchHHHHHHhC-CCeeE
Q psy15557 153 EALLSFQPDIYIDTMGYAFTYPLFSYIG-GSKVA 185 (207)
Q Consensus 153 EAl~~~~PDVfIDTmGyaFtyPl~k~l~-g~~V~ 185 (207)
..|.+...|+.||.++--.+--+.++++ +.+++
T Consensus 80 ~~lr~~~yD~vidl~~~~~s~~l~~~~~~~~r~G 113 (322)
T PRK10964 80 EALQAEQYDAVIDAQGLVKSAALVTRLAHGVKHG 113 (322)
T ss_pred HHHhccCCCEEEEccchHHHHHHHHHhcCCcEec
Confidence 5578889999999998655545544454 34444
No 136
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=36.85 E-value=98 Score=26.03 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=29.3
Q ss_pred HHHHhhhhccCCccEEEEEccCCCCCCcc-hhH--------HHHHHHHHHhhCCCceEEEEcCCC
Q psy15557 40 YYVSKKRKSYNVLKTVAFFHPYCNAGGGG-ERV--------LWTAVLALHQKYPDYKIYIYTGDV 95 (207)
Q Consensus 40 ~~~~~k~~~~~~~~~VgFFHPycnaGGGG-ERV--------LW~Ai~alq~~~~~~~~vIYTgd~ 95 (207)
.|+.+.-+..+++++|-|.|-.-...|+. +.. -......+.+++|+++. +.+|+.
T Consensus 95 ~WL~~~L~~~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~-v~~GH~ 158 (214)
T cd07399 95 QWANEVLKKHPDRPAILTTHAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFM-VLSGHV 158 (214)
T ss_pred HHHHHHHHHCCCCCEEEEecccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEE-EEcccc
Confidence 45554444333456777776655544332 211 12234456677877776 667873
No 137
>PRK10444 UMP phosphatase; Provisional
Probab=36.62 E-value=63 Score=28.19 Aligned_cols=42 Identities=10% Similarity=0.180 Sum_probs=31.6
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCc
Q psy15557 74 TAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQA 118 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~ 118 (207)
+++++++++ +.++++-|+....+.+++.++.++ .|++++++.
T Consensus 24 ~~l~~L~~~--g~~~~~~Tn~~~~~~~~~~~~l~~-~G~~~~~~~ 65 (248)
T PRK10444 24 EFLHRILDK--GLPLVLLTNYPSQTGQDLANRFAT-AGVDVPDSV 65 (248)
T ss_pred HHHHHHHHC--CCeEEEEeCCCCCCHHHHHHHHHH-cCCCCCHhh
Confidence 555566665 788999999987889999999955 777766443
No 138
>PF14979 TMEM52: Transmembrane 52
Probab=36.49 E-value=99 Score=26.47 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=15.5
Q ss_pred EcCCCCCChhHHHHHHHHhccee
Q psy15557 91 YTGDVDASPSEIIKRAHQRFNIV 113 (207)
Q Consensus 91 YTgd~~~~~~~il~~a~~rF~i~ 113 (207)
|+-|.--+=||.++-+|.||...
T Consensus 115 ~a~e~PP~YeEAlkM~k~r~~~~ 137 (154)
T PF14979_consen 115 YALELPPSYEEALKMAKPRFEVA 137 (154)
T ss_pred cCCCCCCCHHHHHhhcccccccc
Confidence 44444445588899888888653
No 139
>cd08465 PBP2_ToxR The C-terminal substrate binding domain of LysR-type transcriptional regulator ToxR regulates the expression of the toxoflavin biosynthesis genes; contains the type 2 periplasmic bindinig fold. In soil bacterium Burkholderia glumae, ToxR regulates the toxABCDE and toxFGHI operons in the presence of toxoflavin as a coinducer. Additionally, the expression of both operons requires a transcriptional activator, ToxJ, whose expression is regulated by the TofI or TofR quorum-sensing system. The biosynthesis of toxoflavin is suggested to be synthesized in a pathway common to the synthesis of riboflavin. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After
Probab=36.06 E-value=78 Score=24.18 Aligned_cols=37 Identities=11% Similarity=0.176 Sum_probs=28.8
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
+...+-.++.++++++|++++-+.+++ .+++++...+
T Consensus 11 ~~~~l~~~l~~f~~~~P~i~l~i~~~~----~~~~~~~L~~ 47 (200)
T cd08465 11 ARLVLPALMRQLRAEAPGIDLAVSQAS----REAMLAQVAD 47 (200)
T ss_pred HHHhhhHHHHHHHHHCCCcEEEEecCC----hHhHHHHHHC
Confidence 457888999999999999999998754 3555666554
No 140
>PF03159 XRN_N: XRN 5'-3' exonuclease N-terminus; InterPro: IPR004859 Signatures of this entry align residues towards the N terminus of several proteins with multiple functions. The members of this family all appear to possess 5'-3' exonuclease activity 3.1.11 from EC. Thus, the aligned region may be necessary for 5'-3' exonuclease function.; GO: 0003676 nucleic acid binding, 0004527 exonuclease activity, 0005622 intracellular; PDB: 2Y35_A 3PIE_B 3PIF_C 3FQD_A.
Probab=35.90 E-value=56 Score=29.01 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=32.9
Q ss_pred HHHHHHhhhhccCCccEEEEEccCCCCCCcchhHHHHHHHHHHh---hCCCceEEEEcCCC
Q psy15557 38 FKYYVSKKRKSYNVLKTVAFFHPYCNAGGGGERVLWTAVLALHQ---KYPDYKIYIYTGDV 95 (207)
Q Consensus 38 ~r~~~~~k~~~~~~~~~VgFFHPycnaGGGGERVLW~Ai~alq~---~~~~~~~vIYTgd~ 95 (207)
++.|+.+|-+....-+.+-++.-.++--|=||-=+-.-|+.... .+||-..+||+.|.
T Consensus 156 L~~~~~~k~~~~~~~~~~~vi~S~~~vpGEGE~KI~~~IR~~~~~~~~~~n~~h~i~g~Da 216 (237)
T PF03159_consen 156 LRYYIKKKLNSDPKWQNLKVIFSGSDVPGEGEHKIMDFIRSQRSQPDYDPNTSHCIYGSDA 216 (237)
T ss_dssp HHHHHHHHHHH-GGGCCSEEEEE-TTSSS-HHHHHHHHHHHHHHSTTS-TT--EEEE-SST
T ss_pred HHHHHHHHhcCCCCcCceEEEEeCCCCCCccHHHHHHHHHHhhhcCCCCCCceEEEEecCH
Confidence 44555544432111123445566677777999888899988765 25788999999983
No 141
>PF03466 LysR_substrate: LysR substrate binding domain; InterPro: IPR005119 The structure of this domain is known and is similar to the periplasmic binding proteins []. This domain is found in members of the LysR family of prokaryotic transcriptional regulatory proteins IPR000847 from INTERPRO which share sequence similarities over approximately 280 residues including a putative helix-turn-helix DNA-binding motif at their N terminus.; PDB: 3ONM_B 3FZJ_J 3FXR_B 3N6T_A 3FXQ_A 3FXU_A 3N6U_A 2QSX_B 3HO7_B 1IZ1_B ....
Probab=35.87 E-value=1.2e+02 Score=22.85 Aligned_cols=65 Identities=15% Similarity=0.295 Sum_probs=44.3
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHh-cceee-----cCCceEEEEcCc
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQR-FNIVL-----PEQAINFVYLYR 126 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~r-F~i~L-----~~~~i~FV~Lr~ 126 (207)
..||..+-. +...+-..+..+++++|++++-+.+++ .+++.+..++. .++-+ +++.++...|..
T Consensus 8 l~Ig~~~~~------~~~~l~~~l~~~~~~~P~i~i~~~~~~----~~~~~~~l~~g~~Dl~i~~~~~~~~~~~~~~l~~ 77 (209)
T PF03466_consen 8 LRIGASPSF------ASSLLPPLLAEFRERHPNIRIEIREGD----SDELIEALRSGELDLAITFGPPPPPGLESEPLGE 77 (209)
T ss_dssp EEEEEEHHH------HHHTHHHHHHHHHHHSTTEEEEEEEES----HHHHHHHHHTTSSSEEEESSSSSSTTEEEEEEEE
T ss_pred EEEEEEhHH------HHHHHHHHHHHHHHHCCCcEEEEEecc----chhhhHHHhcccccEEEEEeeccccccccccccc
Confidence 456655432 357788999999999999999999876 47888888774 33221 234566666655
Q ss_pred c
Q psy15557 127 R 127 (207)
Q Consensus 127 r 127 (207)
.
T Consensus 78 ~ 78 (209)
T PF03466_consen 78 E 78 (209)
T ss_dssp E
T ss_pred e
Confidence 3
No 142
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=35.84 E-value=1.4e+02 Score=24.53 Aligned_cols=61 Identities=33% Similarity=0.371 Sum_probs=41.7
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEE-cCCCC-CChhHHHHHHHHhcceeecCCceEEEEcCc
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIY-TGDVD-ASPSEIIKRAHQRFNIVLPEQAINFVYLYR 126 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIY-Tgd~~-~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~ 126 (207)
..|.++ ||-|-++=.|.+.++++||+.+++-+ .|..+ .+.+++++++++ . ...+.||-+-.
T Consensus 47 ~~v~ll-------G~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~-----~-~pdiv~vglG~ 109 (171)
T cd06533 47 LRVFLL-------GAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINA-----S-GADILFVGLGA 109 (171)
T ss_pred CeEEEE-------CCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHH-----c-CCCEEEEECCC
Confidence 457776 68999999999999999999999873 44322 233445666655 2 24566776654
No 143
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=35.74 E-value=1.6e+02 Score=26.06 Aligned_cols=40 Identities=20% Similarity=0.117 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCCEEEECCCccchHHHHHHhCC--CeeEEeee
Q psy15557 149 ILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGG--SKVACYIH 189 (207)
Q Consensus 149 ~L~~EAl~~~~PDVfIDTmGyaFtyPl~k~l~g--~~V~~YvH 189 (207)
....+.+.+..||+.|-|.++ ++.|..+...+ .|++.-++
T Consensus 94 ~~l~~~l~~~~pD~Vi~~~~~-~~~~~~~~~~~~~ip~~~~~t 135 (380)
T PRK13609 94 KRLKLLLQAEKPDIVINTFPI-IAVPELKKQTGISIPTYNVLT 135 (380)
T ss_pred HHHHHHHHHhCcCEEEEcChH-HHHHHHHHhcCCCCCeEEEeC
Confidence 345677888999999987654 46776654444 56554343
No 144
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=35.69 E-value=89 Score=28.07 Aligned_cols=45 Identities=27% Similarity=0.422 Sum_probs=31.1
Q ss_pred CCCcchhHHHHHHHHHHhhCCCceEEEEcCCC----CCChhHHHHHHHHh
Q psy15557 64 AGGGGERVLWTAVLALHQKYPDYKIYIYTGDV----DASPSEIIKRAHQR 109 (207)
Q Consensus 64 aGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~----~~~~~~il~~a~~r 109 (207)
.-||+|+++=.+.+...+..|+ -++|+|+.. +-|-+.+.++++++
T Consensus 61 v~Gg~e~l~~~i~~~~~~~~p~-~i~v~~tc~~~liGdDi~~v~~~~~~~ 109 (399)
T cd00316 61 VFGGGEKLLEAIINELKRYKPK-VIFVYTTCTTELIGDDIEAVAKEASKE 109 (399)
T ss_pred eeCCHHHHHHHHHHHHHHcCCC-EEEEecCchhhhhccCHHHHHHHHHHh
Confidence 3467999997777777777774 456666653 24677777777764
No 145
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=35.17 E-value=2.6e+02 Score=28.62 Aligned_cols=96 Identities=18% Similarity=0.243 Sum_probs=57.5
Q ss_pred CCCceEEEEcCCCCCCh----hHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCch--------------hhhhHH
Q psy15557 83 YPDYKIYIYTGDVDASP----SEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYF--------------TLLGQS 144 (207)
Q Consensus 83 ~~~~~~vIYTgd~~~~~----~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~f--------------TLLgQs 144 (207)
+.|.++.|=+|+ +|+ +++++..+++ + .+++|.-+-+.+.-++..=+.+ .-+.+.
T Consensus 224 ~~~~kIfI~AGE--~SGDlhgA~Li~aLk~~-----~-P~i~~~GvGG~~M~aaG~e~l~d~~eLsVmG~~EVL~~l~~l 295 (608)
T PRK01021 224 FSNTSCFISAGE--HSGDTLGGNLLKEIKAL-----Y-PDIHCFGVGGPQMRAEGFHPLFNMEEFQVSGFWEVLLALFKL 295 (608)
T ss_pred ccCCeEEEEecc--ccHHHHHHHHHHHHHhc-----C-CCcEEEEEccHHHHhCcCcccCChHHhhhhhHHHHHHHHHHH
Confidence 457788888887 455 4555665553 2 3577777766555444221111 112333
Q ss_pred HHHHHHHHHHHhcCCCCEE--EECCCccchHHHHHHhC--CC--eeEEee
Q psy15557 145 IGSMILGVEALLSFQPDIY--IDTMGYAFTYPLFSYIG--GS--KVACYI 188 (207)
Q Consensus 145 lGSi~L~~EAl~~~~PDVf--IDTmGyaFtyPl~k~l~--g~--~V~~Yv 188 (207)
..-.--..|++.+..||++ ||.- .|.++++|.+- |. ||+-||
T Consensus 296 ~~~~~~l~~~i~~~kPD~vIlID~P--gFNlrLAK~lkk~Gi~ipviyYV 343 (608)
T PRK01021 296 WYRYRKLYKTILKTNPRTVICIDFP--DFHFLLIKKLRKRGYKGKIVHYV 343 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCC--CCCHHHHHHHHhcCCCCCEEEEE
Confidence 3344445577888899965 5776 47888998764 53 776665
No 146
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=34.79 E-value=1.4e+02 Score=24.74 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=25.0
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHH
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAH 107 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~ 107 (207)
|.++++.+++.+.+.- --+++|.|++ ..+++.+..+
T Consensus 30 g~pli~~~l~~l~~~g-~~~v~iv~~~---~~~~~~~~l~ 65 (233)
T cd06425 30 NKPMIEHQIEALAKAG-VKEIILAVNY---RPEDMVPFLK 65 (233)
T ss_pred CcchHHHHHHHHHHCC-CcEEEEEeee---CHHHHHHHHh
Confidence 4699999999999862 2367777876 3455555444
No 147
>cd08461 PBP2_DntR_like_3 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytra
Probab=34.61 E-value=59 Score=24.29 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=23.2
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
++.++=..+.+.++++|++++-+++++
T Consensus 11 ~~~~l~~~l~~f~~~~P~v~i~i~~~~ 37 (198)
T cd08461 11 QKAILPPLLAALRQEAPGVRVAIRDLE 37 (198)
T ss_pred HHHHhHHHHHHHHHHCCCcEEEEeeCC
Confidence 456777889999999999999999875
No 148
>PF02873 MurB_C: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; InterPro: IPR011601 This entry represents a C-terminal conserved region of UDP-N-acetylenolpyruvoylglucosamine reductase 1.1.1.158 from EC, which is also called UDP-N-acetylmuramate dehydrogenase. It is a part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide, which is a precursor of bacterial peptidoglycan. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 1MBB_A 2Q85_A 2MBR_A 1UXY_A 1MBT_A 1HSK_A 2GQU_A 2GQT_A 3I99_A 3TX1_A.
Probab=34.38 E-value=32 Score=26.96 Aligned_cols=35 Identities=17% Similarity=0.502 Sum_probs=19.5
Q ss_pred CceEEEEcCCCCCChhHHH-------HHHHHhcceeecCCceEEE
Q psy15557 85 DYKIYIYTGDVDASPSEII-------KRAHQRFNIVLPEQAINFV 122 (207)
Q Consensus 85 ~~~~vIYTgd~~~~~~~il-------~~a~~rF~i~L~~~~i~FV 122 (207)
...++|=.|+ +|.++++ ++|+++|||+|+ ..+++|
T Consensus 63 HanfivN~g~--Ata~dv~~Li~~v~~~V~~~~Gi~Le-~Ev~~i 104 (105)
T PF02873_consen 63 HANFIVNHGG--ATAADVLALIEEVRERVKEKFGIELE-PEVRII 104 (105)
T ss_dssp STTEEEE-SS----HHHHHHHHHHHHHHHHHHHS--B--BSSEEE
T ss_pred hCCeEEECCC--CCHHHHHHHHHHHHHHHHHHHCCeee-eccEEe
Confidence 3466666675 6666554 688999999998 555554
No 149
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=34.33 E-value=2.7e+02 Score=23.63 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=24.4
Q ss_pred HHhcCCCCEEEECCCccchHHHHH--HhCCCeeEEeeeC
Q psy15557 154 ALLSFQPDIYIDTMGYAFTYPLFS--YIGGSKVACYIHY 190 (207)
Q Consensus 154 Al~~~~PDVfIDTmGyaFtyPl~k--~l~g~~V~~YvHY 190 (207)
.+.+..||+.....+. .+.+..+ ...|+|++.+.|-
T Consensus 77 ~~~~~~~dvvh~~~~~-~~~~~~~~~~~~~~p~i~~~h~ 114 (367)
T cd05844 77 LLRRHRPDLVHAHFGF-DGVYALPLARRLGVPLVVTFHG 114 (367)
T ss_pred HHHhhCCCEEEeccCc-hHHHHHHHHHHcCCCEEEEEeC
Confidence 4677899998877654 3444332 2348899999993
No 150
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=34.10 E-value=1.5e+02 Score=27.57 Aligned_cols=107 Identities=23% Similarity=0.294 Sum_probs=62.9
Q ss_pred CCcchhHHHHHH-HHHHhhCCCceEEE--EcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhh
Q psy15557 65 GGGGERVLWTAV-LALHQKYPDYKIYI--YTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLL 141 (207)
Q Consensus 65 GGGGERVLW~Ai-~alq~~~~~~~~vI--YTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLL 141 (207)
.|=||-+.=.|| +++++++|+..+.. |-|+. +.+ ++=+|... .+.+. +....+--.+..-.++-+
T Consensus 5 nghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~----~~~-----e~~~ip~~-g~~~~--~~sgg~~~~~~~~~~~~~ 72 (396)
T TIGR03492 5 NGHGEDLIAARIAKALLQLSPDLNLEALPLVGEG----RAY-----QNLGIPII-GPTKE--LPSGGFSYQSLRGLLRDL 72 (396)
T ss_pred CCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCC----HHH-----hhCCCcee-CCCCC--CCCCCccCCCHHHHHHHH
Confidence 457888775554 56777778776661 44541 111 11112221 12222 222222222223345556
Q ss_pred hH-HHHHHHHHHHHHhcC--CCCEEEECCCccchHHH-HHHhCCCeeEE
Q psy15557 142 GQ-SIGSMILGVEALLSF--QPDIYIDTMGYAFTYPL-FSYIGGSKVAC 186 (207)
Q Consensus 142 gQ-slGSi~L~~EAl~~~--~PDVfIDTmGyaFtyPl-~k~l~g~~V~~ 186 (207)
.+ .+++.+-++.++.++ .||+.+-+=||. |+ +-++.|.+++.
T Consensus 73 ~~gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v---~~~aA~~~~~p~~~ 118 (396)
T TIGR03492 73 RAGLVGLTLGQWRALRKWAKKGDLIVAVGDIV---PLLFAWLSGKPYAF 118 (396)
T ss_pred HhhHHHHHHHHHHHHHHHhhcCCEEEEECcHH---HHHHHHHcCCCceE
Confidence 66 778888889999999 999999999998 53 35677877665
No 151
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=34.05 E-value=61 Score=24.63 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=20.9
Q ss_pred CCceEEEEcCCC-------------------CCChhHHHHHHHHhc
Q psy15557 84 PDYKIYIYTGDV-------------------DASPSEIIKRAHQRF 110 (207)
Q Consensus 84 ~~~~~vIYTgd~-------------------~~~~~~il~~a~~rF 110 (207)
.++.++||||.. +.|++||.+.+++|+
T Consensus 34 ~~~daiVvtG~~~n~mg~~d~~~~~pVInA~G~T~eEI~~~v~~rl 79 (80)
T PF03698_consen 34 QNVDAIVVTGQDTNMMGIQDTSTKVPVINASGLTAEEIVQEVEERL 79 (80)
T ss_pred CCcCEEEEECCCcccccccccccCceEEecCCCCHHHHHHHHHHhh
Confidence 367888888863 248899999999885
No 152
>cd08439 PBP2_LrhA_like The C-terminal substrate domain of LysR-like regulator LrhA (LysR homologue A) and that of closely related homologs, contains the type 2 periplasmic binding fold. This CD represents the LrhA subfamily of LysR-like bacterial transcriptional regulators, including LrhA, HexA, PecT, and DgdR. LrhA is involved in control of the transcription of flagellar, motility, and chemotaxis genes by regulating the synthesis and concentration of FlhD(2)C(2), the master regulator for the expression of flagellar and chemotaxis genes. The LrhA protein has strong homology to HexA and PecT from plant pathogenic bacteria, in which HexA and PecT act as repressors of motility and of virulence factors, such as exoenzymes required for lytic reactions. DgdR also shares similar characteristics to those of LrhA, HexA and PecT. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a vari
Probab=33.76 E-value=1e+02 Score=23.04 Aligned_cols=37 Identities=11% Similarity=0.201 Sum_probs=28.0
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
+...+-..+..+++++|++++-+++++ .+++.+..++
T Consensus 11 ~~~~l~~~l~~~~~~~P~v~i~~~~~~----~~~~~~~l~~ 47 (185)
T cd08439 11 ADTILPFLLNRFASVYPRLAIEVVCKR----TPRLMEMLER 47 (185)
T ss_pred hHHHHHHHHHHHHHHCCCeEEEEEECC----hHHHHHHHHC
Confidence 456677889999999999999998864 3556655544
No 153
>cd08427 PBP2_LTTR_like_2 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functi
Probab=33.73 E-value=90 Score=23.05 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=28.4
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
++..+-.+++.+++++|+.++.+.+++ .+++.+..++
T Consensus 11 ~~~~l~~~l~~~~~~~P~i~l~~~~~~----~~~~~~~l~~ 47 (195)
T cd08427 11 LTGLLPRALARLRRRHPDLEVHIVPGL----SAELLARVDA 47 (195)
T ss_pred HHHHhHHHHHHHHHHCCCceEEEEeCC----cHHHHHHHHC
Confidence 456788999999999999999998765 2555555544
No 154
>TIGR02706 P_butyryltrans phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs.
Probab=33.65 E-value=2.8e+02 Score=24.95 Aligned_cols=79 Identities=24% Similarity=0.259 Sum_probs=49.1
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeC
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEA 132 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~ 132 (207)
+.|+|-. |.-||||= |+.++++. +..+.++ -|| +++|-+.+ ++.|.++ +++++|+-....
T Consensus 14 ~ri~~~~------~~d~~vl~-A~~~~~~~-~~~~~iL-vG~----~~~I~~~~-~~~~l~~--~~ieIi~~~~~~---- 73 (294)
T TIGR02706 14 KTVAVAV------AQDEPVLE-AVKEAKEH-GIARAIL-VGD----EEKINEIA-KKIGMNL--DDVEIVNAPSPK---- 73 (294)
T ss_pred CeEEEeC------CCCHHHHH-HHHHHHHC-CCceEEE-ECC----HHHHHHHH-HHcCCCc--cCcEEECCCCcH----
Confidence 5687743 46789995 44445543 3456555 466 34444444 4455433 456666653311
Q ss_pred CCCCchhhhhHHHHHHHHHHHHHhcCCCCEEE
Q psy15557 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYI 164 (207)
Q Consensus 133 ~~yp~fTLLgQslGSi~L~~EAl~~~~PDVfI 164 (207)
.|+..+.+.+.+-.-|.++
T Consensus 74 -------------~s~~~a~~lv~~G~aD~~v 92 (294)
T TIGR02706 74 -------------KAALLAVRLVSTGKADMLM 92 (294)
T ss_pred -------------HHHHHHHHHHHCCCCCEEE
Confidence 2888999999999999999
No 155
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=32.99 E-value=2.2e+02 Score=25.32 Aligned_cols=85 Identities=15% Similarity=0.208 Sum_probs=54.2
Q ss_pred cchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhHHHH
Q psy15557 67 GGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIG 146 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslG 146 (207)
+|+.++..+++++++...--+++|.+.. +..+.+++.-+ ....+++++|.=-..+ --
T Consensus 30 ~g~pll~~tl~~f~~~~~i~~Ivvv~~~---~~~~~~~~~~~----~~~~~~v~~v~GG~~R----------------~~ 86 (230)
T COG1211 30 GGRPLLEHTLEAFLESPAIDEIVVVVSP---EDDPYFEKLPK----LSADKRVEVVKGGATR----------------QE 86 (230)
T ss_pred CCEEehHHHHHHHHhCcCCCeEEEEECh---hhhHHHHHhhh----hccCCeEEEecCCccH----------------HH
Confidence 5889999999999997554577777754 22344444433 1112456666533222 36
Q ss_pred HHHHHHHHHhcCCCCEEE-ECCCccchHH
Q psy15557 147 SMILGVEALLSFQPDIYI-DTMGYAFTYP 174 (207)
Q Consensus 147 Si~L~~EAl~~~~PDVfI-DTmGyaFtyP 174 (207)
|++-|++++.+..+|.++ -+--=||+.+
T Consensus 87 SV~~gL~~~~~~~~~~VlvHDaaRPf~~~ 115 (230)
T COG1211 87 SVYNGLQALSKYDSDWVLVHDAARPFLTP 115 (230)
T ss_pred HHHHHHHHhhccCCCEEEEeccccCCCCH
Confidence 889999999987676543 3444677776
No 156
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=32.97 E-value=20 Score=30.25 Aligned_cols=48 Identities=27% Similarity=0.391 Sum_probs=31.6
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCC----ceEEEEcCCCCCChhHHHHHHHHh
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPD----YKIYIYTGDVDASPSEIIKRAHQR 109 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~----~~~vIYTgd~~~~~~~il~~a~~r 109 (207)
.+|=.=.+-.|-| .|++.+.++.+. ...++|-|| |.+.|+.++.+++.
T Consensus 155 ~~vEvrp~~~~KG--------~av~~ll~~~~~~~~~~~~~l~~GD-D~tDE~~f~~~~~~ 206 (235)
T PF02358_consen 155 KVVEVRPPGVNKG--------SAVRRLLEELPFAGPKPDFVLYIGD-DRTDEDAFRALREL 206 (235)
T ss_dssp SEEEEE-TT--HH--------HHHHHHHTTS---------EEEEES-SHHHHHHHHTTTTS
T ss_pred CEEEEEeCCCChH--------HHHHHHHHhcCccccccceeEEecC-CCCCHHHHHHHHhc
Confidence 4555544444545 788888888765 489999999 78899999999886
No 157
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=32.72 E-value=3.2e+02 Score=26.40 Aligned_cols=77 Identities=31% Similarity=0.351 Sum_probs=48.6
Q ss_pred HHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhHHHHHHHHHHHH-
Q psy15557 76 VLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEA- 154 (207)
Q Consensus 76 i~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslGSi~L~~EA- 154 (207)
++++++...--..++-||.. -..+.++.+.+.|+|.-+ + ..|.-- + |.=| ++++.|.++.+++-
T Consensus 23 i~~~~~~~~~~~~vi~TGQH--~d~em~~~~le~~~i~~p-d----y~L~i~---~----~~~t-l~~~t~~~i~~~~~v 87 (383)
T COG0381 23 VKALEKDPDFELIVIHTGQH--RDYEMLDQVLELFGIRKP-D----YDLNIM---K----PGQT-LGEITGNIIEGLSKV 87 (383)
T ss_pred HHHHHhCCCCceEEEEeccc--ccHHHHHHHHHHhCCCCC-C----cchhcc---c----cCCC-HHHHHHHHHHHHHHH
Confidence 56666643234666778862 235889999999988622 1 111110 0 1111 68999999999887
Q ss_pred HhcCCCCEEE---ECC
Q psy15557 155 LLSFQPDIYI---DTM 167 (207)
Q Consensus 155 l~~~~PDVfI---DTm 167 (207)
+.+..||+.. ||.
T Consensus 88 l~~~kPD~VlVhGDT~ 103 (383)
T COG0381 88 LEEEKPDLVLVHGDTN 103 (383)
T ss_pred HHhhCCCEEEEeCCcc
Confidence 5677999877 665
No 158
>PRK13337 putative lipid kinase; Reviewed
Probab=32.50 E-value=1.6e+02 Score=26.06 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=31.8
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHH
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAH 107 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~ 107 (207)
+..-+.+|.++.| .++|.+-...+.+++. +.++.+|.+...-+.+++.+++.
T Consensus 3 r~~~I~Np~aG~~-~~~~~~~~~~~~l~~~--~~~~~~~~t~~~~~a~~~a~~~~ 54 (304)
T PRK13337 3 RARIIYNPTSGRE-LFKKNLPDVLQKLEQA--GYETSAHATTGPGDATLAAERAV 54 (304)
T ss_pred eEEEEECCcccch-hHHHHHHHHHHHHHHc--CCEEEEEEecCCCCHHHHHHHHH
Confidence 3455788887544 3456655555556554 55666665554566777777664
No 159
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=32.39 E-value=95 Score=28.49 Aligned_cols=50 Identities=34% Similarity=0.610 Sum_probs=33.6
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCC------CCChhHHHHHHHHhcc
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDV------DASPSEIIKRAHQRFN 111 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~------~~~~~~il~~a~~rF~ 111 (207)
+.||+| ++|=||=-|| +++.++.|+-.+ ||-||. +-|+++|.+.+.+.++
T Consensus 6 ~~IgvF----DSGVGGLsVl----rei~~~LP~e~~-iY~~D~a~~PYG~ks~e~I~~~~~~i~~ 61 (269)
T COG0796 6 PPIGVF----DSGVGGLSVL----REIRRQLPDEDI-IYVGDTARFPYGEKSEEEIRERTLEIVD 61 (269)
T ss_pred CeEEEE----ECCCCcHHHH----HHHHHHCCCCcE-EEEecCCCCCCCCCCHHHHHHHHHHHHH
Confidence 579998 4666676665 555566665554 577885 2488888877766554
No 160
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=32.31 E-value=84 Score=26.70 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=23.3
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCCChhHHHHHH
Q psy15557 74 TAVLALHQKYPDYKIYIYTGDVDASPSEIIKRA 106 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a 106 (207)
..++.+++++|+.+++++|++ .+++.+.+.+
T Consensus 57 ~~~~~l~~~~p~~~iIvlt~~--~~~~~~~~~~ 87 (207)
T PRK11475 57 SCLTELAIKFPRMRRLVIADD--DIEARLIGSL 87 (207)
T ss_pred HHHHHHHHHCCCCCEEEEeCC--CCHHHHHHHH
Confidence 578888889999999999986 2344455544
No 161
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=31.95 E-value=63 Score=28.97 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=25.7
Q ss_pred CceEEEEcCCCCCChhHHH-------HHHHHhcceeecCCceEEE
Q psy15557 85 DYKIYIYTGDVDASPSEII-------KRAHQRFNIVLPEQAINFV 122 (207)
Q Consensus 85 ~~~~vIYTgd~~~~~~~il-------~~a~~rF~i~L~~~~i~FV 122 (207)
...++|=+|+ ++.++++ ++|+++|||+|+ ..++++
T Consensus 254 hanfivN~g~--at~~dv~~L~~~v~~~V~~~~gi~Le-~Ev~~~ 295 (298)
T PRK13905 254 HANFIINTGG--ATAADIEDLIEHVQKTVKEKFGVELE-WEVRII 295 (298)
T ss_pred cCcEEEECCC--CCHHHHHHHHHHHHHHHHHHHCCeee-EeeEEe
Confidence 4567777776 6776665 789999999998 445554
No 162
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=31.87 E-value=1.5e+02 Score=28.56 Aligned_cols=61 Identities=23% Similarity=0.375 Sum_probs=38.0
Q ss_pred cchhHHHHHHHHHHhhCCC-ceEEEEcCCC----CCChhHHHHHHHHhcceeecCCceEEEEcCcc
Q psy15557 67 GGERVLWTAVLALHQKYPD-YKIYIYTGDV----DASPSEIIKRAHQRFNIVLPEQAINFVYLYRR 127 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~-~~~vIYTgd~----~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r 127 (207)
|||+=|=.||+.+-+++|+ --++|+|+.. +-|-+.+.+++++++.-+.+...+..|++..-
T Consensus 72 GG~~kL~~aI~~~~~~~~~p~~I~V~ttC~~eiIGDDi~~v~~~~~~~~~~e~~~~~~~vv~v~tp 137 (457)
T TIGR02932 72 GGAKRIEEGVLTLARRYPNLRVIPIITTCSTETIGDDIEGSIRKVNRALKKEFPDRKIKLVPVHTP 137 (457)
T ss_pred CcHHHHHHHHHHHHHhCCCCCEEEEECCchHHhhcCCHHHHHHHHHhhhhhhcCCCCCeEEEeeCC
Confidence 4556666999999999864 4577777653 22667777777665543333224455665543
No 163
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=31.83 E-value=1.6e+02 Score=20.51 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=21.3
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHH
Q psy15557 74 TAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAH 107 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~ 107 (207)
..++.+++..|+..++++|++ .++++..+-.+
T Consensus 60 ~~~~~i~~~~~~~~ii~~t~~--~~~~~~~~~~~ 91 (112)
T PF00072_consen 60 ELLEQIRQINPSIPIIVVTDE--DDSDEVQEALR 91 (112)
T ss_dssp HHHHHHHHHTTTSEEEEEESS--TSHHHHHHHHH
T ss_pred ccccccccccccccEEEecCC--CCHHHHHHHHH
Confidence 556677777788999999976 34444444443
No 164
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=31.75 E-value=86 Score=26.71 Aligned_cols=48 Identities=10% Similarity=0.104 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHhhC-CCceEEEEcCCCCCChhHHHHHHHHhcceeecC
Q psy15557 69 ERVLWTAVLALHQKY-PDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPE 116 (207)
Q Consensus 69 ERVLW~Ai~alq~~~-~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~ 116 (207)
|+++..|++++.... .+.++.+-|.....+++++.++.++.+|+++++
T Consensus 13 ~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~ 61 (236)
T TIGR01460 13 HKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSP 61 (236)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCH
Confidence 344555555554332 257788888776789999999999988887653
No 165
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=31.39 E-value=79 Score=30.83 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=82.0
Q ss_pred EEccCCCCCCcchhHHHHHHHHHHhhCCCceEEE---------Ec--CCCCCChhHH--HHHHHHhcceeecCCceEEEE
Q psy15557 57 FFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYI---------YT--GDVDASPSEI--IKRAHQRFNIVLPEQAINFVY 123 (207)
Q Consensus 57 FFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vI---------YT--gd~~~~~~~i--l~~a~~rF~i~L~~~~i~FV~ 123 (207)
-.=|--|+| +.||.-++-|-+-.++...++ |. +....+++++ ++...++|.-++++ +.
T Consensus 182 Vl~PGvNdg----e~L~kT~~dL~~~g~~~~~~~~~~pvGlt~~n~~~i~~~t~~~l~~~k~i~re~~~E~~~-----~~ 252 (414)
T COG1625 182 VLCPGVNDG----EELEKTLEDLEEWGAHEVILMRVVPVGLTRYNRPGIRPPTPHELEEFKEIVREFDRELGS-----IR 252 (414)
T ss_pred EEcCCcCcH----HHHHHHHHHHHHhCcCceeEEEeecceeeecCCCCCCCCCHHHHHHHHHHHHHHHHhcCc-----eE
Confidence 457999999 999999999999888777777 21 2223455544 34555566555652 55
Q ss_pred cCccceeeCCCCCchhhhhHHHHHHHHHHHHHhcCCCCEEEECCCccchHHHHHHhC
Q psy15557 124 LYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIG 180 (207)
Q Consensus 124 Lr~r~lve~~~yp~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyPl~k~l~ 180 (207)
+.+.++-++..|-.|+++....|++...+.-. +..-++.-.-+-+|++-++++.+.
T Consensus 253 V~g~Pl~~~~~~e~f~~~~~~v~~i~~~L~~~-~~~a~iltg~ia~p~~~~~~~~~e 308 (414)
T COG1625 253 VTGTPLPDALLGEPFPQLEDGVGEIREFLPEV-DFEATILTGEIAAPRIRTIVRGLE 308 (414)
T ss_pred EeCCCCCchhhcCcchhhhccchhhhhhcccc-cccccccccccccceeeehhhhcc
Confidence 66788999999999999999999987666554 444556666777778777777544
No 166
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=31.26 E-value=4e+02 Score=24.09 Aligned_cols=37 Identities=30% Similarity=0.415 Sum_probs=24.7
Q ss_pred cchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHH
Q psy15557 67 GGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKR 105 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~ 105 (207)
|=.+.+-.-++++++++|+.++++-|.. .+..++.++
T Consensus 61 Ge~~~~~~l~~~l~~~~~~~~i~~t~~t--~~~~~~~~~ 97 (425)
T PRK05749 61 GETRAAIPLIRALRKRYPDLPILVTTMT--PTGSERAQA 97 (425)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEeCCC--ccHHHHHHH
Confidence 3445666778888899999988776543 345555544
No 167
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=30.65 E-value=2.7e+02 Score=25.00 Aligned_cols=84 Identities=15% Similarity=0.138 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhHHHHHHHHH
Q psy15557 72 LWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILG 151 (207)
Q Consensus 72 LW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslGSi~L~ 151 (207)
-+-+++.+++++||+++.+.+.. ...+|++..... + .+..+..++.+ -.++.+.--
T Consensus 18 t~p~~~~lk~~~P~a~i~~~~~~---~~~~i~~~~p~I-----~--~vi~~~~~~~~--------------~~~~~~~~l 73 (334)
T COG0859 18 TLPLLRTLKKAYPNAKIDVLVPK---GFAPILKLNPEI-----D--KVIIIDKKKKG--------------LGLKERLAL 73 (334)
T ss_pred HHHHHHHHHHHCCCCEEEEEecc---chHHHHhcChHh-----h--hhccccccccc--------------cchHHHHHH
Confidence 36788999999999999988865 445666554331 1 11111111111 234555556
Q ss_pred HHHHhcCCCCEEEECCCccchHHHHHHh
Q psy15557 152 VEALLSFQPDIYIDTMGYAFTYPLFSYI 179 (207)
Q Consensus 152 ~EAl~~~~PDVfIDTmGyaFtyPl~k~l 179 (207)
+..+.+...|..||-+|..=+.-+.+.+
T Consensus 74 ~~~lr~~~yD~vidl~~~~ksa~l~~~~ 101 (334)
T COG0859 74 LRTLRKERYDAVIDLQGLLKSALLALLL 101 (334)
T ss_pred HHHhhccCCCEEEECcccHHHHHHHHHh
Confidence 6778888999999999987776666533
No 168
>cd08414 PBP2_LTTR_aromatics_like The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LTTRs involved in degradation of aromatic compounds, such as CbnR, BenM, CatM, ClcR and TfdR, as well as that of other transcriptional regulators clustered together in phylogenetic trees, including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and OccR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they ca
Probab=30.48 E-value=1.3e+02 Score=22.14 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=27.9
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
+..++-.++..+++++|+.++-+.+++ .+++.+..++
T Consensus 11 ~~~~l~~~l~~~~~~~p~i~i~i~~~~----~~~~~~~l~~ 47 (197)
T cd08414 11 LYGLLPRLLRRFRARYPDVELELREMT----TAEQLEALRA 47 (197)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEecCC----hHHHHHHHHc
Confidence 456788899999999999999998865 2455555544
No 169
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=30.38 E-value=62 Score=29.26 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=25.0
Q ss_pred CceEEEEcCCCCCChhHHH-------HHHHHhcceeecCCceEE
Q psy15557 85 DYKIYIYTGDVDASPSEII-------KRAHQRFNIVLPEQAINF 121 (207)
Q Consensus 85 ~~~~vIYTgd~~~~~~~il-------~~a~~rF~i~L~~~~i~F 121 (207)
...++|=+|+ ++.+||+ ++|+++|||+|+ ..+++
T Consensus 253 HanfivN~g~--Ata~di~~Li~~v~~~V~~~~Gi~Le-~Ev~i 293 (295)
T PRK14649 253 HANYIINLGG--ARAADILRLIDLARTRVLAQFGIELE-LEVRI 293 (295)
T ss_pred cCcEEEECCC--CCHHHHHHHHHHHHHHHHHHHCCeee-EEeEE
Confidence 4567777775 7777766 689999999998 44444
No 170
>cd08431 PBP2_HupR The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, p
Probab=30.35 E-value=64 Score=24.12 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=23.0
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
+...+-.++.++++++|++++-+.+++
T Consensus 11 ~~~~l~~~l~~~~~~~P~v~i~i~~~~ 37 (195)
T cd08431 11 PLQPLYPLIAEFYQLNKATRIRLSEEV 37 (195)
T ss_pred ChHHHHHHHHHHHHHCCCCceEEEEec
Confidence 346788999999999999999998765
No 171
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=30.24 E-value=1.3e+02 Score=29.70 Aligned_cols=44 Identities=18% Similarity=0.388 Sum_probs=32.4
Q ss_pred cchhHHHHHHHHHHhhCCC-ceEEEEcCCC----CCChhHHHHHHHHhc
Q psy15557 67 GGERVLWTAVLALHQKYPD-YKIYIYTGDV----DASPSEIIKRAHQRF 110 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~-~~~vIYTgd~----~~~~~~il~~a~~rF 110 (207)
|||+=|-.+|+...++|++ ..+.|||+.. +-|-+.+.++++++.
T Consensus 110 GGe~kL~~~I~ea~~~~~~p~~I~V~tTC~t~lIGDDi~av~k~~~~~~ 158 (513)
T TIGR01861 110 GAEKLLKQNIIEAFKAFPHIKRMTIYQTCATALIGDDIAAIAKEVMEEM 158 (513)
T ss_pred CcHHHHHHHHHHHHHhCCCCCeEEEEccCchhhccCCHHHHHHHHHHhc
Confidence 5788888999999999964 4688887653 226667777777754
No 172
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=30.13 E-value=82 Score=27.31 Aligned_cols=10 Identities=30% Similarity=0.909 Sum_probs=6.7
Q ss_pred EEEEEccCCC
Q psy15557 54 TVAFFHPYCN 63 (207)
Q Consensus 54 ~VgFFHPycn 63 (207)
-+-|..||-+
T Consensus 67 diQfinpyqD 76 (189)
T PF05568_consen 67 DIQFINPYQD 76 (189)
T ss_pred cccccCcccc
Confidence 4667777754
No 173
>PF15102 TMEM154: TMEM154 protein family
Probab=29.98 E-value=26 Score=29.59 Aligned_cols=11 Identities=27% Similarity=0.522 Sum_probs=6.9
Q ss_pred CceEEEEcCCC
Q psy15557 85 DYKIYIYTGDV 95 (207)
Q Consensus 85 ~~~~vIYTgd~ 95 (207)
+++.-||--|.
T Consensus 109 nv~~PiFEedt 119 (146)
T PF15102_consen 109 NVKVPIFEEDT 119 (146)
T ss_pred cccccccccCC
Confidence 45556787763
No 174
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=29.87 E-value=2.2e+02 Score=20.73 Aligned_cols=66 Identities=12% Similarity=0.280 Sum_probs=42.5
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceee
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVE 131 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve 131 (207)
..|-|+-|.|... |.+=.+++.+.+++++..+.+...|.| ++ ...++|+++--| .|+..+....++
T Consensus 20 vvv~F~a~wC~~C----k~~~p~l~~~~~~~~~~~~~~~~vd~d-~~-----~~~~~~~v~~~P---t~~~~~~g~~~~ 85 (102)
T cd02948 20 TVVDVYQEWCGPC----KAVVSLFKKIKNELGDDLLHFATAEAD-TI-----DTLKRYRGKCEP---TFLFYKNGELVA 85 (102)
T ss_pred EEEEEECCcCHhH----HHHhHHHHHHHHHcCCCcEEEEEEeCC-CH-----HHHHHcCCCcCc---EEEEEECCEEEE
Confidence 5688999999988 777677777877776544555555644 32 234778876542 455556655443
No 175
>cd08468 PBP2_Pa0477 The C-terminal substrate biniding domain of an uncharacterized LysR-like transcriptional regulator Pa0477 related to DntR, contains the type 2 periplasmic binding fold. LysR-type transcriptional regulator Pa0477 is related to DntR, which controls genes encoding enzymes for oxidative degradation of the nitro-aromatic compound 2,4-dinitrotoluene. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their spec
Probab=29.82 E-value=2.5e+02 Score=21.26 Aligned_cols=56 Identities=9% Similarity=0.087 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH-hcceeec--------CCceEEEEcCccc
Q psy15557 69 ERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ-RFNIVLP--------EQAINFVYLYRRK 128 (207)
Q Consensus 69 ERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~-rF~i~L~--------~~~i~FV~Lr~r~ 128 (207)
.-++-.+++++++++|++++-+.++. .+++.+..++ +.++-+. ++.++...+...+
T Consensus 12 ~~~l~~~l~~~~~~~P~v~i~~~~~~----~~~~~~~l~~g~~Dl~i~~~~~~~~~~~~~~~~~l~~~~ 76 (202)
T cd08468 12 LAVMPRLMARLEELAPSVRLNLVHAE----QKLPLDALLAGEIDFALGYSHDDGAEPRLIEERDWWEDT 76 (202)
T ss_pred HHHhHHHHHHHHhhCCCCEEEEEECC----hHhHHHHHHCCCccEEEecccccccCCCCEEEEEEecCc
Confidence 45778999999999999999999864 3555555553 3333211 2456666665533
No 176
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=29.78 E-value=21 Score=26.55 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhCCCceEEEEcCC
Q psy15557 72 LWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 72 LW~Ai~alq~~~~~~~~vIYTgd 94 (207)
+-..++.+.++.|+.++.++|.-
T Consensus 67 l~~~i~~~~~~~~~~~i~i~TNg 89 (119)
T PF13394_consen 67 LIELIEYLKERGPEIKIRIETNG 89 (119)
T ss_dssp HHHHHCTSTT-----EEEEEE-S
T ss_pred HHHHHHHHHhhCCCceEEEEeCC
Confidence 34455555566667788888854
No 177
>cd08485 PBP2_ClcR The C-terminal substrate binding domain of LysR-type transcriptional regulator ClcR involved in the chlorocatechol catabolism, contains type 2 periplasmic binding fold. In soil bacterium Pseudomonas putida, the ortho-pathways of catechol and 3-chlorocatechol are central catabolic pathways that convert aromatic and chloroaromaric compounds to tricarboxylic acid (TCA) cycle intermediates. The 3-chlorocatechol-degradative pathway is encoded by clcABD operon, which requires the divergently transcribed clcR and an intermediate of the pathway, 2-chloromuconate, as an inducer for activation. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding th
Probab=29.67 E-value=1.3e+02 Score=22.84 Aligned_cols=36 Identities=11% Similarity=-0.030 Sum_probs=27.9
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHH
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAH 107 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~ 107 (207)
+..++=.++.++++++|++++-+++++ .+++.+..+
T Consensus 12 ~~~~l~~~l~~~~~~~P~i~l~~~~~~----~~~~~~~l~ 47 (198)
T cd08485 12 VLHTLPLLLRQLLSVAPSATVSLTQMS----KNRQIEALD 47 (198)
T ss_pred hhHHHHHHHHHHHHhCCCcEEEEEECC----HHHHHHHHH
Confidence 456777899999999999999998764 355666554
No 178
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=29.58 E-value=86 Score=29.02 Aligned_cols=6 Identities=33% Similarity=0.584 Sum_probs=2.5
Q ss_pred HHhhhh
Q psy15557 42 VSKKRK 47 (207)
Q Consensus 42 ~~~k~~ 47 (207)
+|||||
T Consensus 281 YRRKKK 286 (299)
T PF02009_consen 281 YRRKKK 286 (299)
T ss_pred HHHHhh
Confidence 444443
No 179
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=29.40 E-value=1.3e+02 Score=28.99 Aligned_cols=45 Identities=29% Similarity=0.564 Sum_probs=32.4
Q ss_pred cchhHHHHHHHHHHhhCCCceEEEEcCCC----CCChhHHHHHHHHhcc
Q psy15557 67 GGERVLWTAVLALHQKYPDYKIYIYTGDV----DASPSEIIKRAHQRFN 111 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~~~vIYTgd~----~~~~~~il~~a~~rF~ 111 (207)
|||.-|=.+|..+.++++---++|+|+.. +-|-+.+.++++++.+
T Consensus 102 Gg~~kL~~~I~ei~~~~~P~~I~V~tTC~~~lIGdDi~~v~~~~~~~~~ 150 (475)
T PRK14478 102 GGEKKLFKAIDEIIEKYAPPAVFVYQTCVVALIGDDIDAVCKRAAEKFG 150 (475)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHHHHHHHHHhhC
Confidence 35666669999999886545677888764 3477888888887654
No 180
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=29.24 E-value=85 Score=28.94 Aligned_cols=35 Identities=11% Similarity=0.270 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCCChhHHH-------HHHHHhcceeecCCceEEE
Q psy15557 85 DYKIYIYTGDVDASPSEII-------KRAHQRFNIVLPEQAINFV 122 (207)
Q Consensus 85 ~~~~vIYTgd~~~~~~~il-------~~a~~rF~i~L~~~~i~FV 122 (207)
...++|=+|+ ++.+|++ ++|+++|||+|+ ..++++
T Consensus 258 HanfIVN~G~--Ata~Dil~Li~~v~~~V~~~~GI~Le-~Ev~~i 299 (302)
T PRK14650 258 HGNFIININN--ATSKDIKTLIEKVKTEVQIKTGFLLE-EEVLYI 299 (302)
T ss_pred cccEEEECCC--CCHHHHHHHHHHHHHHHHHHHCCeee-EeeEEE
Confidence 4567777776 6776665 789999999998 556665
No 181
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=29.18 E-value=2e+02 Score=26.83 Aligned_cols=52 Identities=21% Similarity=0.144 Sum_probs=33.3
Q ss_pred EccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCC----CCChhHHHHHHHHhc
Q psy15557 58 FHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDV----DASPSEIIKRAHQRF 110 (207)
Q Consensus 58 FHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~----~~~~~~il~~a~~rF 110 (207)
++..--.-|| |.-|=.||+.+.++++---++|+|+.. +-|-+.+.+++++++
T Consensus 56 l~E~d~V~Gg-~~~L~~~i~~~~~~~~p~~I~v~~tC~~~liGdDi~~v~~~~~~~~ 111 (428)
T cd01965 56 MTEDAAVFGG-EDNLIEALKNLLSRYKPDVIGVLTTCLTETIGDDVAGFIKEFRAEG 111 (428)
T ss_pred CCCCCeeECc-HHHHHHHHHHHHHhcCCCEEEEECCcchhhcCCCHHHHHHHHHhhc
Confidence 3333334445 555559999998876444677887763 236677777777765
No 182
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=29.15 E-value=1.7e+02 Score=20.00 Aligned_cols=52 Identities=21% Similarity=0.458 Sum_probs=31.3
Q ss_pred ccEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhccee
Q psy15557 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIV 113 (207)
Q Consensus 52 ~~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~ 113 (207)
...|-|+-|.|... |.+...++.+.+++++ ++.++.=|.+.++ +..++|++.
T Consensus 16 ~vvi~f~~~~C~~C----~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~-----~~~~~~~v~ 67 (101)
T TIGR01068 16 PVLVDFWAPWCGPC----KMIAPILEELAKEYEG-KVKFVKLNVDENP-----DIAAKYGIR 67 (101)
T ss_pred cEEEEEECCCCHHH----HHhCHHHHHHHHHhcC-CeEEEEEECCCCH-----HHHHHcCCC
Confidence 35778888889877 6666666777766653 2444444433222 345678775
No 183
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=28.97 E-value=2.3e+02 Score=27.61 Aligned_cols=82 Identities=26% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhh-----hHHHHHHHH
Q psy15557 76 VLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLL-----GQSIGSMIL 150 (207)
Q Consensus 76 i~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLL-----gQslGSi~L 150 (207)
.++|++.+++..+.+-||-..+. |-..+ ..|+||.|..-..-+.+.|.---+= .+.+.|- +
T Consensus 32 a~aLv~d~~~~~Il~IsG~~~~~------------~F~~~-~gVd~V~LPsl~k~~~G~~~~~d~~~~l~e~~~~Rs~-l 97 (400)
T COG4671 32 AHALVEDYLGFDILIISGGPPAG------------GFPGP-AGVDFVKLPSLIKGDNGEYGLVDLDGDLEETKKLRSQ-L 97 (400)
T ss_pred HHHHhhcccCceEEEEeCCCccC------------CCCCc-ccCceEecCceEecCCCceeeeecCCCHHHHHHHHHH-H
Q ss_pred HHHHHhcCCCCEEEECCCccch
Q psy15557 151 GVEALLSFQPDIYIDTMGYAFT 172 (207)
Q Consensus 151 ~~EAl~~~~PDVfIDTmGyaFt 172 (207)
-.++..++.|||||..- .||.
T Consensus 98 il~t~~~fkPDi~IVd~-~P~G 118 (400)
T COG4671 98 ILSTAETFKPDIFIVDK-FPFG 118 (400)
T ss_pred HHHHHHhcCCCEEEEec-cccc
No 184
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=28.87 E-value=70 Score=28.67 Aligned_cols=35 Identities=9% Similarity=0.390 Sum_probs=25.0
Q ss_pred CceEEEEcCCCCCChhHHH-------HHHHHhcceeecCCceEEE
Q psy15557 85 DYKIYIYTGDVDASPSEII-------KRAHQRFNIVLPEQAINFV 122 (207)
Q Consensus 85 ~~~~vIYTgd~~~~~~~il-------~~a~~rF~i~L~~~~i~FV 122 (207)
...++|=.|+ ++.++|+ ++|+++|||+|+ ..++++
T Consensus 242 HanfivN~g~--At~~di~~Li~~v~~~V~~~~gi~Le-~Ev~~i 283 (284)
T TIGR00179 242 HANFLVNIDN--AKSEDVLDLIEHVKAEVGEKYGILLE-PEVKII 283 (284)
T ss_pred cCcEEEECCC--CCHHHHHHHHHHHHHHHHHHHCCeee-EEeEEc
Confidence 4466776665 6776665 789999999998 445543
No 185
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=28.36 E-value=4.6e+02 Score=23.86 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=33.5
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcc
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFN 111 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~ 111 (207)
.+..|++|+++.. ++ .+++.-.++.|+++=+-|- |+||-+++-++.+|
T Consensus 67 ei~vyl~~~~~~~----~~--~~l~~~L~~~~~V~~v~~v-----skeeal~~l~~~~g 114 (309)
T PRK11026 67 QLTVYLDKTLDDD----AA--NAVVEQLKAEDGVEKVNYL-----SREEALGEFRNWSG 114 (309)
T ss_pred eEEEEECCCCCHH----HH--HHHHHHHhCCCCcceEEEE-----CHHHHHHHHHHhhC
Confidence 5788999987654 22 3444444557888777775 67888888887665
No 186
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=28.33 E-value=96 Score=24.11 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=26.5
Q ss_pred hhCCCceEEEEcCCC------------CCChhHHHHHHHHhcceeec
Q psy15557 81 QKYPDYKIYIYTGDV------------DASPSEIIKRAHQRFNIVLP 115 (207)
Q Consensus 81 ~~~~~~~~vIYTgd~------------~~~~~~il~~a~~rF~i~L~ 115 (207)
..-|+-.++||.||. .--=+++|+++++.||.+-+
T Consensus 34 ~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~ 80 (100)
T PF02519_consen 34 SDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQD 80 (100)
T ss_pred CCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCcCCC
Confidence 445789999999992 22457899999999986543
No 187
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=28.33 E-value=6.8e+02 Score=25.88 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=36.9
Q ss_pred CCccEEEEEccCCCCCCcchhHHHHHHHHHH--hhCCCceEEEEcCCCCCChhHHHHHHHHhc
Q psy15557 50 NVLKTVAFFHPYCNAGGGGERVLWTAVLALH--QKYPDYKIYIYTGDVDASPSEIIKRAHQRF 110 (207)
Q Consensus 50 ~~~~~VgFFHPycnaGGGGERVLW~Ai~alq--~~~~~~~~vIYTgd~~~~~~~il~~a~~rF 110 (207)
++.+.|+.+=|--|-. .|.-..++++. ..||+..+++=+...|-...+++++..+++
T Consensus 60 ~~~~~vsIlVPa~nE~----~vi~~~i~~ll~~ldYP~~eI~vi~~~nD~~T~~~~~~l~~~~ 118 (727)
T PRK11234 60 PDEKPLAIMVPAWNET----GVIGNMAELAATTLDYENYHIFVGTYPNDPATQADVDAVCARF 118 (727)
T ss_pred CCCCCEEEEEecCcch----hhHHHHHHHHHHhCCCCCeEEEEEecCCChhHHHHHHHHHHHC
Confidence 3447799999998887 68888888764 468986544422111223347777777765
No 188
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=28.32 E-value=90 Score=32.36 Aligned_cols=77 Identities=21% Similarity=0.364 Sum_probs=48.6
Q ss_pred EEEEccCCCC------CCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhc-ceeecCCceEEEEcCcc
Q psy15557 55 VAFFHPYCNA------GGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRF-NIVLPEQAINFVYLYRR 127 (207)
Q Consensus 55 VgFFHPycna------GGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF-~i~L~~~~i~FV~Lr~r 127 (207)
+-..=|.|++ |=|-||+- +.+++.+|+++++...+|...++. -++..-+.| +.+.| |-+...
T Consensus 474 ~p~~Cp~Cgs~~L~~~G~Gterie----eeL~~~FP~~rv~r~d~Dtt~~k~-~~~~~l~~~~~ge~d------ILiGTQ 542 (730)
T COG1198 474 IPQSCPECGSEHLRAVGPGTERIE----EELKRLFPGARIIRIDSDTTRRKG-ALEDLLDQFANGEAD------ILIGTQ 542 (730)
T ss_pred CCCCCCCCCCCeeEEecccHHHHH----HHHHHHCCCCcEEEEccccccchh-hHHHHHHHHhCCCCC------eeecch
Confidence 4445566654 56778874 788889999999999999654443 333333334 35555 445555
Q ss_pred ceeeCCCCCchhhhh
Q psy15557 128 KFVEASLYPYFTLLG 142 (207)
Q Consensus 128 ~lve~~~yp~fTLLg 142 (207)
-+...-.||..||.|
T Consensus 543 miaKG~~fp~vtLVg 557 (730)
T COG1198 543 MIAKGHDFPNVTLVG 557 (730)
T ss_pred hhhcCCCcccceEEE
Confidence 555556667766654
No 189
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=28.00 E-value=1.2e+02 Score=28.22 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=27.8
Q ss_pred CCCCcc-hhHHHHHHHHHHhhCCCceEEEEcCCC-C---CChhHHHHHHHHh
Q psy15557 63 NAGGGG-ERVLWTAVLALHQKYPDYKIYIYTGDV-D---ASPSEIIKRAHQR 109 (207)
Q Consensus 63 naGGGG-ERVLW~Ai~alq~~~~~~~~vIYTgd~-~---~~~~~il~~a~~r 109 (207)
.-|||+ ||+. .+|+.+.++++---++|+|+.. + -|-+.+.++++++
T Consensus 64 ~v~~G~~~kL~-~~I~~~~~~~~p~~I~v~~tC~~~iIGdDi~~v~~~~~~~ 114 (430)
T cd01981 64 VLARGSQEKVV-ENITRKDKEEKPDLIVLTPTCTSSILQEDLQNFVRAAGLS 114 (430)
T ss_pred heecCcHHHHH-HHHHHHHHhcCCCEEEEeCCccHHHHhhCHHHHHHHhhhc
Confidence 346566 5555 7788777766444677777643 2 2555666666654
No 190
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=27.99 E-value=1.6e+02 Score=20.94 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=23.5
Q ss_pred hCCCceEEEEcCCCCCChhHHHHHHHHhc-ceeecCCceEEEEc
Q psy15557 82 KYPDYKIYIYTGDVDASPSEIIKRAHQRF-NIVLPEQAINFVYL 124 (207)
Q Consensus 82 ~~~~~~~vIYTgd~~~~~~~il~~a~~rF-~i~L~~~~i~FV~L 124 (207)
++|+.+++-.-- + ++.++.+++++ .-... ++++|+.-
T Consensus 22 ~~~~~~v~gvD~----s-~~~~~~a~~~~~~~~~~-~~i~~~~~ 59 (112)
T PF12847_consen 22 LFPGARVVGVDI----S-PEMLEIARERAAEEGLS-DRITFVQG 59 (112)
T ss_dssp HHTTSEEEEEES----S-HHHHHHHHHHHHHTTTT-TTEEEEES
T ss_pred cCCCCEEEEEeC----C-HHHHHHHHHHHHhcCCC-CCeEEEEC
Confidence 456787665432 2 67889999987 22233 67777763
No 191
>cd08442 PBP2_YofA_SoxR_like The C-terminal substrate binding domain of LysR-type transcriptional regulators, YofA and SoxR, contains the type 2 periplasmic binding fold. YofA is a LysR-like transcriptional regulator of cell growth in Bacillus subtillis. YofA controls cell viability and the formation of constrictions during cell division. YofaA positively regulates expression of the cell division gene ftsW, and thus is essential for cell viability during stationary-phase growth of Bacillus substilis. YofA shows significant homology to SoxR from Arthrobacter sp. TE1826. SoxR is a negative regulator for the sarcosine oxidase gene soxA. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine, which is involved in the metabolism of creatine and choline. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides
Probab=27.83 E-value=1.2e+02 Score=22.24 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHH
Q psy15557 69 ERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAH 107 (207)
Q Consensus 69 ERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~ 107 (207)
...+=.++..+++++|++++-+.+++ .+++.+..+
T Consensus 12 ~~~l~~~l~~~~~~~P~i~l~i~~~~----~~~~~~~l~ 46 (193)
T cd08442 12 AVRLPPLLAAYHARYPKVDLSLSTGT----TGALIQAVL 46 (193)
T ss_pred hhhhHHHHHHHHHHCCCceEEEEeCC----cHHHHHHHH
Confidence 35667889999999999999998865 355666554
No 192
>PLN03017 trehalose-phosphatase
Probab=27.81 E-value=98 Score=29.44 Aligned_cols=52 Identities=25% Similarity=0.393 Sum_probs=36.4
Q ss_pred EEEEcc--CCCCCCcchhHHHHHHHHHHhhCC----CceEEEEcCCCCCChhHHHHHHHHh---cceeec
Q psy15557 55 VAFFHP--YCNAGGGGERVLWTAVLALHQKYP----DYKIYIYTGDVDASPSEIIKRAHQR---FNIVLP 115 (207)
Q Consensus 55 VgFFHP--ycnaGGGGERVLW~Ai~alq~~~~----~~~~vIYTgd~~~~~~~il~~a~~r---F~i~L~ 115 (207)
|-=..| ..|-| .|++.+.++.+ +...+||-|| |.+.|+.++-++++ |+|.+-
T Consensus 273 VlEvRP~~~~dKG--------~Av~~LL~~l~~~~~~~~~pvyiGD-D~TDEDaF~~L~~~~~G~gI~VG 333 (366)
T PLN03017 273 VFEIRPMIEWDKG--------KALEFLLESLGFGNTNNVFPVYIGD-DRTDEDAFKMLRDRGEGFGILVS 333 (366)
T ss_pred EEEecCCCCCCHH--------HHHHHHHHhcccccCCCceEEEeCC-CCccHHHHHHHhhcCCceEEEEC
Confidence 334455 45666 77888877643 2457999999 89999999988753 555553
No 193
>COG4936 PocR Predicted sensor domain [Signal transduction mechanisms / Transcription]
Probab=27.56 E-value=48 Score=28.55 Aligned_cols=84 Identities=24% Similarity=0.286 Sum_probs=61.7
Q ss_pred CChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhHHHHH------------HHHHHHHHhcCCCCEEE
Q psy15557 97 ASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGS------------MILGVEALLSFQPDIYI 164 (207)
Q Consensus 97 ~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslGS------------i~L~~EAl~~~~PDVfI 164 (207)
+..+.+++|..|.|.-.-. =....|..++...-++++|-+| +|-+.| +.-|.||-..-.|=||.
T Consensus 6 ~~n~~ll~k~~d~Fs~at~-lA~VvVdihG~evs~l~Nftpf---Cqlirs~pk~~~rC~~sd~~GGlEAsktgkP~IYr 81 (169)
T COG4936 6 VINIGLLQKFQDNFSEATR-LAAVVVDIHGKEVSKLSNFTPF---CQLIRSTPKGEKRCAESDKKGGLEASKTGKPYIYR 81 (169)
T ss_pred HHHHHHHHHHHHHHHHhhc-eeEEEEecCCceecchhcccHH---HHHHHhCcchhhHHHhhhcccCeecccCCCcEEEE
Confidence 5568899999999963221 2346677888888888876555 666654 45678888888999999
Q ss_pred ECCCc-cchHHHHHHhCCCeeEE
Q psy15557 165 DTMGY-AFTYPLFSYIGGSKVAC 186 (207)
Q Consensus 165 DTmGy-aFtyPl~k~l~g~~V~~ 186 (207)
.-.|. -|+.|++ .+|.-|++
T Consensus 82 ChaGLtDFs~Piv--v~gqlvGf 102 (169)
T COG4936 82 CHAGLTDFSAPIV--VGGQLVGF 102 (169)
T ss_pred ecCCccccccceE--EcceeEEE
Confidence 99998 5999986 56665554
No 194
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=27.44 E-value=1.1e+02 Score=26.86 Aligned_cols=37 Identities=22% Similarity=0.459 Sum_probs=23.4
Q ss_pred HHHHHHHhhCCCceEEEEcCCC------CCChhHHHHHHHHhcc
Q psy15557 74 TAVLALHQKYPDYKIYIYTGDV------DASPSEIIKRAHQRFN 111 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd~------~~~~~~il~~a~~rF~ 111 (207)
...+++++..|+..+ ||-||. +-|+++|.+.+.+-.+
T Consensus 12 tv~~~l~~~~p~~~~-iy~~D~~~~PYG~ks~~~i~~~~~~~~~ 54 (251)
T TIGR00067 12 SVLKEIRKQLPKEHY-IYVGDTKRFPYGEKSPEFILEYVLELLT 54 (251)
T ss_pred HHHHHHHHHCCCCCE-EEEecCCCCCCCCCCHHHHHHHHHHHHH
Confidence 344677777776654 677775 2477777777765433
No 195
>PRK11716 DNA-binding transcriptional regulator IlvY; Provisional
Probab=27.31 E-value=2.3e+02 Score=23.11 Aligned_cols=49 Identities=12% Similarity=0.073 Sum_probs=35.3
Q ss_pred cCCccEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHH
Q psy15557 49 YNVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAH 107 (207)
Q Consensus 49 ~~~~~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~ 107 (207)
.++..+||..+..+ ..++-..+..+++++|++++-+.+++ .+++++...
T Consensus 65 ~~~~l~I~~~~~~~------~~~~~~~l~~~~~~~p~i~l~i~~~~----~~~~~~~l~ 113 (269)
T PRK11716 65 LSGELSLFCSVTAA------YSHLPPILDRFRAEHPLVEIKLTTGD----AADAVEKVQ 113 (269)
T ss_pred cCceEEEEecchHH------HHHHHHHHHHHHHHCCCeEEEEEECC----HHHHHHHHH
Confidence 34446788766542 45888999999999999999998865 355555443
No 196
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=27.26 E-value=88 Score=23.37 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=25.3
Q ss_pred HHHHHhh--CCCceEEEEcCCCCCChhHHHHHHHHhcc
Q psy15557 76 VLALHQK--YPDYKIYIYTGDVDASPSEIIKRAHQRFN 111 (207)
Q Consensus 76 i~alq~~--~~~~~~vIYTgd~~~~~~~il~~a~~rF~ 111 (207)
+++..++ .|++-.++.+|| .+++++.+.+++.|+
T Consensus 7 l~~f~~~~y~p~n~~l~i~Gd--~~~~~~~~~i~~~~~ 42 (184)
T PF05193_consen 7 LRAFYKKFYRPSNMTLVIVGD--IDPDELEKLIEKYFG 42 (184)
T ss_dssp HHHHHHHHSSGGGEEEEEEES--SGHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCccceEEEEEcC--ccHHHHHHHHHhhhh
Confidence 4444444 367777777898 688899999999886
No 197
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=27.24 E-value=84 Score=28.64 Aligned_cols=35 Identities=11% Similarity=0.332 Sum_probs=26.3
Q ss_pred CceEEEEcCCCCCChhHHH-------HHHHHhcceeecCCceEEE
Q psy15557 85 DYKIYIYTGDVDASPSEII-------KRAHQRFNIVLPEQAINFV 122 (207)
Q Consensus 85 ~~~~vIYTgd~~~~~~~il-------~~a~~rF~i~L~~~~i~FV 122 (207)
...++|=.|+ ++.++|+ ++|+++|||+|+ ..++++
T Consensus 259 HanfivN~g~--At~~di~~Li~~v~~~V~~~~gi~Le-~Ev~~~ 300 (307)
T PRK13906 259 HAGFMVNVDN--GTATDYENLIHYVQKTVKEKFGIELN-REVRII 300 (307)
T ss_pred cccEEEECCC--CCHHHHHHHHHHHHHHHHHHHCCEee-EeeEEE
Confidence 4567777776 7777665 789999999998 556665
No 198
>KOG4169|consensus
Probab=27.12 E-value=91 Score=28.73 Aligned_cols=89 Identities=13% Similarity=0.142 Sum_probs=58.3
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCC--ChhHHHHHHHHhcceeecCCceEEEEcCcccee
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDA--SPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFV 130 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~--~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lv 130 (207)
+..+..|---| =.|+..||..+|..+++.|+-|... +-++-++|.-+.|| ++| |-..+.-+.
T Consensus 31 k~~~i~~~~En---------~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~fg-~iD------IlINgAGi~ 94 (261)
T KOG4169|consen 31 KVLVIDDSEEN---------PEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATFG-TID------ILINGAGIL 94 (261)
T ss_pred hheeehhhhhC---------HHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHHhC-ceE------EEEcccccc
Confidence 34555555544 4899999999999999999998532 44556777778886 455 556677777
Q ss_pred eCCCCCchhh---hhHHHHHHHHHHHHHhcC
Q psy15557 131 EASLYPYFTL---LGQSIGSMILGVEALLSF 158 (207)
Q Consensus 131 e~~~yp~fTL---LgQslGSi~L~~EAl~~~ 158 (207)
+++.|-| |+ |.-.+-|-.+++..+.+-
T Consensus 95 ~dkd~e~-Ti~vNLtgvin~T~~alpyMdk~ 124 (261)
T KOG4169|consen 95 DDKDWER-TINVNLTGVINGTQLALPYMDKK 124 (261)
T ss_pred cchhHHH-hhccchhhhhhhhhhhhhhhhhh
Confidence 7877765 22 122233444555555554
No 199
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=27.03 E-value=1.7e+02 Score=20.94 Aligned_cols=64 Identities=22% Similarity=0.361 Sum_probs=38.5
Q ss_pred CCCCCCcchhHHHHHHHHHHhhCCCceEE--EEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCch
Q psy15557 61 YCNAGGGGERVLWTAVLALHQKYPDYKIY--IYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYF 138 (207)
Q Consensus 61 ycnaGGGGERVLW~Ai~alq~~~~~~~~v--IYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~f 138 (207)
||...|=.-|-.|-+ +++++++|+..+- -+.+ -.-.|.+.+| ..+.+=.++ ...||.-
T Consensus 5 yC~~C~y~~Ra~~l~-q~L~~~Fp~~~v~~~~~~~------------~~G~Fev~~~-g~~v~sk~~------~~~fp~~ 64 (72)
T TIGR02174 5 YCGSCGYKPRAAWLK-QELLEEFPDLEIEGENTPP------------TTGAFEVTVN-GQLVWSKLR------GGGFPEP 64 (72)
T ss_pred ECCCCCChHHHHHHH-HHHHHHCCCCeeEEeeecC------------CCcEEEEEEC-CEEEEEecc------CCCCCCH
Confidence 788998888999876 6888889986332 2222 1245777776 433222222 2456666
Q ss_pred hhhhHH
Q psy15557 139 TLLGQS 144 (207)
Q Consensus 139 TLLgQs 144 (207)
.-+-|.
T Consensus 65 ~~~~~~ 70 (72)
T TIGR02174 65 EELKQL 70 (72)
T ss_pred HHHHHh
Confidence 555443
No 200
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=27.00 E-value=3.9e+02 Score=22.90 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=29.0
Q ss_pred CcchhHH-HHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeec
Q psy15557 66 GGGERVL-WTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLP 115 (207)
Q Consensus 66 GGGERVL-W~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~ 115 (207)
|-|--.| -..+..+.++ +.+++.++.+ -+++++++.+ ++||.+++
T Consensus 34 G~GKTtl~~~~~~~~~~~--g~~~~yi~~e--~~~~~~~~~~-~~~g~~~~ 79 (230)
T PRK08533 34 STGKSILSQRLAYGFLQN--GYSVSYVSTQ--LTTTEFIKQM-MSLGYDIN 79 (230)
T ss_pred CCCHHHHHHHHHHHHHhC--CCcEEEEeCC--CCHHHHHHHH-HHhCCchH
Confidence 4566666 5555555443 4555555654 5889999999 45777665
No 201
>cd08464 PBP2_DntR_like_2 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytra
Probab=26.75 E-value=99 Score=23.00 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=22.5
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
+.-++-.++++.++++|++++-+.+++
T Consensus 11 ~~~~l~~~l~~~~~~~P~v~l~i~~~~ 37 (200)
T cd08464 11 ESWLAPPLLAALRAEAPGVRLVFRQVD 37 (200)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 345677889999999999999998865
No 202
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=26.59 E-value=5.4e+02 Score=24.09 Aligned_cols=13 Identities=8% Similarity=0.194 Sum_probs=10.1
Q ss_pred ccCCccEEEEEcc
Q psy15557 48 SYNVLKTVAFFHP 60 (207)
Q Consensus 48 ~~~~~~~VgFFHP 60 (207)
++++.++|...|=
T Consensus 45 ~kr~srvI~~Ihr 57 (285)
T PF01972_consen 45 EKRGSRVITLIHR 57 (285)
T ss_pred HHhCCEEEEEEEe
Confidence 5566789999994
No 203
>cd08462 PBP2_NodD The C-terminal substsrate binding domain of NodD family of LysR-type transcriptional regulators that regulates the expression of nodulation (nod) genes; contains the type 2 periplasmic binding fold. The nodulation (nod) genes in soil bacteria play important roles in the development of nodules. nod genes are involved in synthesis of Nod factors that are required for bacterial entry into root hairs. Thirteen nod genes have been identified and are classified into five transcription units: nodD, nodABCIJ, nodFEL, nodMNT, and nodO. NodD is negatively auto-regulates its own expression of nodD gene, while other nod genes are inducible and positively regulated by NodD in the presence of flavonoids released by plant roots. This substrate-binding domain has significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. T
Probab=26.53 E-value=1.4e+02 Score=22.61 Aligned_cols=36 Identities=8% Similarity=0.050 Sum_probs=28.3
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
+..++-..+..+++++|+.++-++++. . ++.+..++
T Consensus 11 ~~~~l~~~i~~~~~~~P~i~l~i~~~~----~-~~~~~l~~ 46 (200)
T cd08462 11 ITVLLPPVIERVAREAPGVRFELLPPD----D-QPHELLER 46 (200)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEecCC----h-hHHHHHhc
Confidence 446788899999999999999998753 2 66666665
No 204
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=26.42 E-value=88 Score=28.44 Aligned_cols=35 Identities=11% Similarity=0.378 Sum_probs=25.9
Q ss_pred CceEEEEcCCCCCChhHHH-------HHHHHhcceeecCCceEEE
Q psy15557 85 DYKIYIYTGDVDASPSEII-------KRAHQRFNIVLPEQAINFV 122 (207)
Q Consensus 85 ~~~~vIYTgd~~~~~~~il-------~~a~~rF~i~L~~~~i~FV 122 (207)
...++|=+|+ ++.++++ ++|+++|||+|+ ..++++
T Consensus 259 HanfivN~g~--ata~di~~Li~~v~~~V~~~~gi~Le-~Ev~~~ 300 (305)
T PRK12436 259 HAGFMVNVDN--GTAQDYIDLIHFVQKTVEEKFGVKLE-REVRII 300 (305)
T ss_pred cccEEEECCC--CCHHHHHHHHHHHHHHHHHHHCCeee-EeeEEe
Confidence 4577887886 6775554 789999999998 445554
No 205
>PRK13059 putative lipid kinase; Reviewed
Probab=26.37 E-value=2.2e+02 Score=25.09 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=27.4
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
+..-+++|.++.| -+++.+....+.++++ +.++.+|+.+...+.++..+.+++
T Consensus 3 ~~~~I~NP~aG~g-~~~~~~~~i~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~ 55 (295)
T PRK13059 3 KVKFIYNPYSGEN-AIISELDKVIRIHQEK--GYLVVPYRISLEYDLKNAFKDIDE 55 (295)
T ss_pred EEEEEECCcccch-hHHHHHHHHHHHHHHC--CcEEEEEEccCcchHHHHHHHhhc
Confidence 3456788877544 3345555555556555 456666654433333433333333
No 206
>cd08456 PBP2_LysR The C-terminal substrate binding domain of LysR, transcriptional regulator for lysine biosynthesis, contains the type 2 periplasmic binding fold. LysR, the transcriptional activator of lysA encoding diaminopimelate decarboxylase, catalyses the decarboxylation of diaminopimelate to produce lysine. The LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational
Probab=26.17 E-value=1.6e+02 Score=21.72 Aligned_cols=28 Identities=36% Similarity=0.322 Sum_probs=24.0
Q ss_pred cchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 67 GGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
-++..+-.+++.+++++|+.++-+.+++
T Consensus 10 ~~~~~l~~~l~~~~~~~P~i~~~i~~~~ 37 (196)
T cd08456 10 LSQSFLPRAIKAFLQRHPDVTISIHTRD 37 (196)
T ss_pred HHHhhHHHHHHHHHHHCCCcEEEEEeCC
Confidence 4567788999999999999999998865
No 207
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=26.16 E-value=3e+02 Score=21.46 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=13.4
Q ss_pred CchhhhhHHHHHHHHHHHH
Q psy15557 136 PYFTLLGQSIGSMILGVEA 154 (207)
Q Consensus 136 p~fTLLgQslGSi~L~~EA 154 (207)
+++.++|+|.|+++...-|
T Consensus 80 ~~~~l~G~S~Gg~~a~~~a 98 (257)
T TIGR03611 80 ERFHFVGHALGGLIGLQLA 98 (257)
T ss_pred CcEEEEEechhHHHHHHHH
Confidence 4567899999997544433
No 208
>PRK13054 lipid kinase; Reviewed
Probab=26.16 E-value=1.7e+02 Score=25.81 Aligned_cols=48 Identities=13% Similarity=0.134 Sum_probs=26.6
Q ss_pred EEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHH
Q psy15557 54 TVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAH 107 (207)
Q Consensus 54 ~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~ 107 (207)
..-+.+|- ||+.+.+...++.+++. +..+.++++...-+.+++.+++.
T Consensus 6 ~~~i~N~~----~~~~~~~~~~~~~l~~~--g~~~~v~~t~~~~~a~~~a~~~~ 53 (300)
T PRK13054 6 SLLILNGK----SAGNEELREAVGLLREE--GHTLHVRVTWEKGDAARYVEEAL 53 (300)
T ss_pred EEEEECCC----ccchHHHHHHHHHHHHc--CCEEEEEEecCCCcHHHHHHHHH
Confidence 34455643 33556666777777665 34554454433445666666654
No 209
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=26.07 E-value=1.3e+02 Score=21.81 Aligned_cols=38 Identities=16% Similarity=0.276 Sum_probs=28.7
Q ss_pred cEEEEEcc-CCCCCCcchhHHHHHHHHHHhhCC--CceEEEEcCC
Q psy15557 53 KTVAFFHP-YCNAGGGGERVLWTAVLALHQKYP--DYKIYIYTGD 94 (207)
Q Consensus 53 ~~VgFFHP-ycnaGGGGERVLW~Ai~alq~~~~--~~~~vIYTgd 94 (207)
.+|.|++. .|..+ +-...+++.++++++ +++++.-+.|
T Consensus 28 ~vl~f~~~~~c~~c----~~~l~~l~~~~~~~~~~~~~vi~is~d 68 (124)
T PF00578_consen 28 VVLFFWPTAWCPFC----QAELPELNELYKKYKDKGVQVIGISTD 68 (124)
T ss_dssp EEEEEESTTTSHHH----HHHHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred EEEEEeCccCcccc----ccchhHHHHHhhhhccceEEeeecccc
Confidence 56778877 78777 677788888887755 6777777776
No 210
>PF05717 TnpB_IS66: IS66 Orf2 like protein; InterPro: IPR008878 Thess proteins are found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=25.87 E-value=1.5e+02 Score=23.20 Aligned_cols=42 Identities=19% Similarity=0.288 Sum_probs=30.9
Q ss_pred CceEEEEcCCC--CCChhHHHHHHHHhcceeecCCceEEEEcCcc
Q psy15557 85 DYKIYIYTGDV--DASPSEIIKRAHQRFNIVLPEQAINFVYLYRR 127 (207)
Q Consensus 85 ~~~~vIYTgd~--~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r 127 (207)
+.++.+|++-+ ..+-+.+..-|++.|+.+.. +.--||+..++
T Consensus 1 ~~ri~l~~~~vDmRkg~dgL~~lV~~~~~~dp~-~g~~fvF~nr~ 44 (107)
T PF05717_consen 1 NVRIYLACGPVDMRKGIDGLAALVREELGLDPF-SGDLFVFCNRR 44 (107)
T ss_pred CcEEEEEeCCcccccChhHHHHHHHHhhcCCCC-cceEEEEEecc
Confidence 35788888754 46888999999999997755 45567776663
No 211
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=25.76 E-value=1.9e+02 Score=22.65 Aligned_cols=43 Identities=14% Similarity=0.059 Sum_probs=27.0
Q ss_pred chhHHHHHHHHHHhh-CCCceEEEEcCCCCCChhHHHHHHHHhc
Q psy15557 68 GERVLWTAVLALHQK-YPDYKIYIYTGDVDASPSEIIKRAHQRF 110 (207)
Q Consensus 68 GERVLW~Ai~alq~~-~~~~~~vIYTgd~~~~~~~il~~a~~rF 110 (207)
+|+.|=..++++++. +|+..++|.-++.+-+..+++++..+.+
T Consensus 8 ~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~ 51 (202)
T cd04185 8 RLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLD 51 (202)
T ss_pred CHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCC
Confidence 457777888888765 5666777765443334556666655543
No 212
>cd08413 PBP2_CysB_like The C-terminal substrate domain of LysR-type transcriptional regulators CysB-like contains type 2 periplasmic binding fold. CysB is a transcriptional activator of genes involved in sulfate and thiosulfate transport, sulfate reduction, and cysteine synthesis. In Escherichia coli, the regulation of transcription in response to sulfur source is attributed to two transcriptional regulators, CysB and Cbl. CysB, in association with Cbl, downregulates the expression of ssuEADCB operon which is required for the utilization of sulfur from aliphatic sulfonates, in the presence of cysteine. Also, Cbl and CysB together directly function as transcriptional activators of tauABCD genes, which are required for utilization of taurine as sulfur source for growth. Like many other members of the LTTR family, CysB is composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-bi
Probab=25.71 E-value=1.2e+02 Score=22.95 Aligned_cols=37 Identities=27% Similarity=0.454 Sum_probs=27.9
Q ss_pred cchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHH
Q psy15557 67 GGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAH 107 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~ 107 (207)
-+...+-.++..+++++|++++-+++++ .+++.+..+
T Consensus 10 ~~~~~l~~~l~~~~~~~P~i~v~~~~~~----~~~~~~~l~ 46 (198)
T cd08413 10 QARYVLPPVIAAFRKRYPKVKLSLHQGT----PSQIAEMVL 46 (198)
T ss_pred hhhhhccHHHHHHHHhCCceEEEEEeCC----HHHHHHHHH
Confidence 3456788999999999999999998865 344555543
No 213
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=25.65 E-value=1.8e+02 Score=23.63 Aligned_cols=61 Identities=11% Similarity=0.152 Sum_probs=37.5
Q ss_pred eEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhHHHHHHHHHHHHHhcCCCCEEEEC
Q psy15557 87 KIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDT 166 (207)
Q Consensus 87 ~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslGSi~L~~EAl~~~~PDVfIDT 166 (207)
..+||= +++.+.+.+++++ -+.|+++..... -+.+-.++-.-+.+.+...|+-|||
T Consensus 98 ~~vv~L---~~~~e~~~~Ri~~---------------~~~rP~~~~~~~------~~~~~~l~~~R~~~Y~~~Ad~~idt 153 (172)
T PRK05057 98 GVVVYL---ETTIEKQLARTQR---------------DKKRPLLQVDDP------REVLEALANERNPLYEEIADVTIRT 153 (172)
T ss_pred CEEEEE---eCCHHHHHHHHhC---------------CCCCCCCCCCCH------HHHHHHHHHHHHHHHHhhCCEEEEC
Confidence 356662 5677888877752 123444432221 2345566666677887779999999
Q ss_pred CCccc
Q psy15557 167 MGYAF 171 (207)
Q Consensus 167 mGyaF 171 (207)
.+...
T Consensus 154 ~~~s~ 158 (172)
T PRK05057 154 DDQSA 158 (172)
T ss_pred CCCCH
Confidence 98654
No 214
>PF09983 DUF2220: Uncharacterized protein conserved in bacteria C-term(DUF2220); InterPro: IPR024534 This is a domain of unknown function that is found predominantly in hypothetical bacterial proteins.
Probab=25.63 E-value=1e+02 Score=25.76 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=23.8
Q ss_pred EEEEcCCCCCChhHHHHHHHHhcceeec
Q psy15557 88 IYIYTGDVDASPSEIIKRAHQRFNIVLP 115 (207)
Q Consensus 88 ~vIYTgd~~~~~~~il~~a~~rF~i~L~ 115 (207)
=+.|=||.|..+=+|+++.++++ .++.
T Consensus 88 ~~~ywGDiD~~G~~I~~~lr~~~-p~~~ 114 (181)
T PF09983_consen 88 PVYYWGDIDPGGLRILERLRRKF-PELK 114 (181)
T ss_pred ceEEeccCCHhHHHHHHHHHHhC-CCcc
Confidence 77899999999999999999998 5544
No 215
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=25.50 E-value=77 Score=29.60 Aligned_cols=34 Identities=15% Similarity=0.425 Sum_probs=24.9
Q ss_pred CceEEEEcCCCCCChhHHH-------HHHHHhcceeecCCceEE
Q psy15557 85 DYKIYIYTGDVDASPSEII-------KRAHQRFNIVLPEQAINF 121 (207)
Q Consensus 85 ~~~~vIYTgd~~~~~~~il-------~~a~~rF~i~L~~~~i~F 121 (207)
+..++|-+|. ++.++|+ ++|+++|||+|+ ..+++
T Consensus 293 HanfIVN~G~--Ata~Di~~Li~~v~~~V~e~fGI~Le-~Ev~~ 333 (334)
T PRK00046 293 QALVLVNYGN--ATGADVLALARHIQQDVREKFGVELE-PEPRF 333 (334)
T ss_pred cCcEEEECCC--CCHHHHHHHHHHHHHHHHHHHCCeee-EEeEE
Confidence 4577777776 6776655 789999999998 43444
No 216
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=25.34 E-value=1.2e+02 Score=26.28 Aligned_cols=15 Identities=13% Similarity=0.035 Sum_probs=6.7
Q ss_pred eccchhhHHHHHHHH
Q psy15557 4 CLWTSVVMWLVFLFY 18 (207)
Q Consensus 4 ~~~~~~~~~~~~~~~ 18 (207)
||-.--++=|.+.++
T Consensus 17 cls~~~~psffsthm 31 (189)
T PF05568_consen 17 CLSPVTPPSFFSTHM 31 (189)
T ss_pred hcCCCCCccHHHHHH
Confidence 444444444444444
No 217
>cd08411 PBP2_OxyR The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily. OxyR senses hydrogen peroxide and is activated through the formation of an intramolecular disulfide bond. The OxyR activation induces the transcription of genes necessary for the bacterial defense against oxidative stress. The OxyR of LysR-type transcriptional regulator family is composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repre
Probab=25.14 E-value=1.7e+02 Score=21.87 Aligned_cols=37 Identities=19% Similarity=0.427 Sum_probs=28.3
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
+..++-.++..+++++|++++-+.++. .+++.+..++
T Consensus 12 ~~~~l~~~l~~~~~~~P~i~i~i~~~~----~~~~~~~l~~ 48 (200)
T cd08411 12 APYLLPRLLPALRQAYPKLRLYLREDQ----TERLLEKLRS 48 (200)
T ss_pred HhhhhHHHHHHHHHHCCCcEEEEEeCc----HHHHHHHHHc
Confidence 446788899999999999999998754 3555665544
No 218
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=25.14 E-value=1.4e+02 Score=29.19 Aligned_cols=46 Identities=9% Similarity=0.056 Sum_probs=30.3
Q ss_pred CCCcchhHHHHHHHHHHhhCCCceEEEEcCCC----CCChhHHHHHHHHh
Q psy15557 64 AGGGGERVLWTAVLALHQKYPDYKIYIYTGDV----DASPSEIIKRAHQR 109 (207)
Q Consensus 64 aGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~----~~~~~~il~~a~~r 109 (207)
-+||||+-|=.+|+..-++++---++|+|+.. .-|.+.+.++++++
T Consensus 65 v~~Gg~~kL~~~I~~~~~~~~P~~I~V~tTC~~eiIGDDi~~v~~~~~~~ 114 (513)
T CHL00076 65 LARGSQEKVVDNITRKDKEERPDLIVLTPTCTSSILQEDLQNFVDRASIE 114 (513)
T ss_pred hccchHHHHHHHHHHHHHhcCCCEEEECCCCchhhhhcCHHHHHHHhhcc
Confidence 46677777779999877776555666676653 12666677776543
No 219
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=25.08 E-value=3e+02 Score=22.56 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=39.0
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceee
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVL 114 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L 114 (207)
..|-|+-|.|... |.+=-.++.+.+++++..+.++.=|.+..+ +..++|+|+-
T Consensus 50 vvV~Fya~wC~~C----k~l~p~l~~la~~~~~~~v~f~~VDvd~~~-----~la~~~~V~~ 102 (152)
T cd02962 50 WLVEFFTTWSPEC----VNFAPVFAELSLKYNNNNLKFGKIDIGRFP-----NVAEKFRVST 102 (152)
T ss_pred EEEEEECCCCHHH----HHHHHHHHHHHHHcccCCeEEEEEECCCCH-----HHHHHcCcee
Confidence 4788999999888 777788888888876656777776654443 4557788764
No 220
>cd08421 PBP2_LTTR_like_1 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functi
Probab=25.07 E-value=2.9e+02 Score=20.44 Aligned_cols=57 Identities=11% Similarity=0.116 Sum_probs=35.5
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH-hcceee-----cCCceEEEEcCccc
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ-RFNIVL-----PEQAINFVYLYRRK 128 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~-rF~i~L-----~~~~i~FV~Lr~r~ 128 (207)
++.++=..+..+++++|+.++-+.+++ .+++.+..++ ..++-+ +++.+.+..+...+
T Consensus 11 ~~~~l~~~l~~~~~~~P~i~i~~~~~~----~~~~~~~l~~~~~D~~i~~~~~~~~~~~~~~l~~~~ 73 (198)
T cd08421 11 IVEFLPEDLASFLAAHPDVRIDLEERL----SADIVRAVAEGRADLGIVAGNVDAAGLETRPYRTDR 73 (198)
T ss_pred hhhhhHHHHHHHHHHCCCceEEEEecC----cHHHHHHHhcCCceEEEEecCCCCCCcEEEEeecCc
Confidence 345667889999999999999998754 3555665554 233211 12345566555533
No 221
>cd08463 PBP2_DntR_like_4 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytra
Probab=24.98 E-value=1.5e+02 Score=22.83 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=39.7
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH-hcc--eee---cCCceEEEEcCccc--eeeCCCCC
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ-RFN--IVL---PEQAINFVYLYRRK--FVEASLYP 136 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~-rF~--i~L---~~~~i~FV~Lr~r~--lve~~~yp 136 (207)
+..++-..+.++++++|+.++-+-.++ +.+++++..++ +.+ +.. +++.+++..+.... ++-++.+|
T Consensus 11 ~~~~~~~~l~~~~~~~P~~~v~~~~~~---~~~~l~~~L~~g~lDl~i~~~~~~~~~l~~~~l~~~~~~lv~~~~h~ 84 (203)
T cd08463 11 NALFLPELVARFRREAPGARLEIHPLG---PDFDYERALASGELDLVIGNWPEPPEHLHLSPLFSDEIVCLMRADHP 84 (203)
T ss_pred HHHHhHHHHHHHHHHCCCCEEEEEeCC---cchhHHHHHhcCCeeEEEeccccCCCCcEEeEeecCceEEEEeCCCC
Confidence 567899999999999999999997643 22445555553 222 211 12346666665533 23344444
No 222
>PRK13846 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=24.92 E-value=5.3e+02 Score=24.24 Aligned_cols=122 Identities=17% Similarity=0.242 Sum_probs=74.7
Q ss_pred CCCCCCcchhHHHHHHHHHHhhC---CCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCc
Q psy15557 61 YCNAGGGGERVLWTAVLALHQKY---PDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPY 137 (207)
Q Consensus 61 ycnaGGGGERVLW~Ai~alq~~~---~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~ 137 (207)
++..|-=|-+....+...-.+++ |+..++++ || ++.+++.-++.+ .. +++++|+ ....++-+-=|-
T Consensus 8 DaMGGD~~P~~~v~ga~~al~~~~~~~~~~i~Lv-G~-----~~~i~~~l~~~~--~~-~ri~iv~--a~~vI~m~d~p~ 76 (316)
T PRK13846 8 DLMGGDHSPLVVWEVLGDVLLSSSSEQPVEFTVF-AS-----SEVHHQILSNSP--LS-RSPRIIT--AEDFVSMEDSPL 76 (316)
T ss_pred EccCCCcChHHHHHHHHHHHHhcCCCCCeEEEEE-eC-----HHHHHHHHHhCC--Cc-CceEEEe--CCCcccCCCCHH
Confidence 34445446666666555444556 66776664 55 444444333333 22 5677776 445667666666
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCCCEEEECCCccchH-----HHHHHhCC-CeeEEeeeCccccc
Q psy15557 138 FTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTY-----PLFSYIGG-SKVACYIHYPTITK 195 (207)
Q Consensus 138 fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaFty-----Pl~k~l~g-~~V~~YvHYPtISt 195 (207)
..+-.- =.||..|+|.+.+-.-|.+|-. |-.-.+ -.++.+.| .|-+--+-+||.+.
T Consensus 77 ~a~R~k-~SSm~~a~~lvk~g~ada~VSa-GnTGAl~a~a~~~lgri~Gi~RPala~~lPt~~g 138 (316)
T PRK13846 77 AAIRKK-SSSMALGLDYLQEDKLDAFIST-GNTAALVTLARAKIPMFPAVPRPALLVSVPTMRG 138 (316)
T ss_pred HHHHcC-CCHHHHHHHHHHcCCCCEEEec-ChHHHHHHHHHHHhccCCCCCcceeeeeccCCCC
Confidence 555543 2699999999999999999853 433332 23333445 47778888999864
No 223
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=24.82 E-value=42 Score=26.51 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=22.6
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcce
Q psy15557 74 TAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNI 112 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i 112 (207)
.+++.++++ ++++.|.|||. ..-.+.+.++.||
T Consensus 134 ~~l~~L~~~--Gi~~~i~TGD~----~~~a~~~~~~lgi 166 (215)
T PF00702_consen 134 EALQELKEA--GIKVAILTGDN----ESTASAIAKQLGI 166 (215)
T ss_dssp HHHHHHHHT--TEEEEEEESSE----HHHHHHHHHHTTS
T ss_pred hhhhhhhcc--Ccceeeeeccc----ccccccccccccc
Confidence 667777776 78999999983 3334444455666
No 224
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=24.65 E-value=1.2e+02 Score=24.24 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=17.8
Q ss_pred HHHHHhhCCCceEEEEcCCCCCChhHHHHHH
Q psy15557 76 VLALHQKYPDYKIYIYTGDVDASPSEIIKRA 106 (207)
Q Consensus 76 i~alq~~~~~~~~vIYTgd~~~~~~~il~~a 106 (207)
++++++. +++.||-.+| ++|.++.++.
T Consensus 39 ~kaikkg--kakLVilA~D--~s~~~i~~~~ 65 (122)
T PRK04175 39 TKAVERG--IAKLVVIAED--VDPEEIVAHL 65 (122)
T ss_pred HHHHHcC--CccEEEEeCC--CChHHHHHHH
Confidence 4555554 7899999988 5665554444
No 225
>PF09534 Trp_oprn_chp: Tryptophan-associated transmembrane protein (Trp_oprn_chp); InterPro: IPR019051 Members of this family are predicted transmembrane proteins with four membrane-spanning helices. Members are found in the Actinobacteria (Mycobacterium, Corynebacterium, Streptomyces), always associated with genes for tryptophan biosynthesis.
Probab=24.57 E-value=83 Score=27.14 Aligned_cols=14 Identities=36% Similarity=0.544 Sum_probs=10.9
Q ss_pred CCCcchhHHHHHHH
Q psy15557 64 AGGGGERVLWTAVL 77 (207)
Q Consensus 64 aGGGGERVLW~Ai~ 77 (207)
....-||++|+|+.
T Consensus 170 ~~p~~~r~lWDALd 183 (189)
T PF09534_consen 170 EDPDSERDLWDALD 183 (189)
T ss_pred cCCCCHHHHHHHhc
Confidence 34478999999984
No 226
>PLN00197 beta-amylase; Provisional
Probab=24.29 E-value=65 Score=32.62 Aligned_cols=77 Identities=17% Similarity=0.294 Sum_probs=48.8
Q ss_pred ccCCCCCCcchhHHHHHHHHHHhhCCCceE------EEEcCCCCCChhHHHHHHHHhcceeecCCce-EEEEcCc-ccee
Q psy15557 59 HPYCNAGGGGERVLWTAVLALHQKYPDYKI------YIYTGDVDASPSEIIKRAHQRFNIVLPEQAI-NFVYLYR-RKFV 130 (207)
Q Consensus 59 HPycnaGGGGERVLW~Ai~alq~~~~~~~~------vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i-~FV~Lr~-r~lv 130 (207)
|| .++.-+-|.++|+...+--++ ++.+ ..| | +..=+||++.++.+-+.+=+.+++ .|-|||- ..++
T Consensus 448 qp-~~a~s~PE~Lv~QV~~aA~~~--Gv~vaGENAL~r~--D-~~~~~qI~~~~~~~~~~~~~~~~l~~FTYlRm~~~lf 521 (573)
T PLN00197 448 QP-QDALCAPEKLVRQVALATREA--EVPLAGENALPRY--D-DYAHEQILQASSLNIDGNSEDREMCAFTYLRMNPHLF 521 (573)
T ss_pred CC-ccccCCHHHHHHHHHHHHHHc--CCcEeeecccccc--C-hhHHHHHHHhcccccCCCcccCceeeEEEeCCChHHc
Confidence 45 455557899999999887765 2222 223 2 224568888865443222111233 5999994 7799
Q ss_pred eCCCCCchhhh
Q psy15557 131 EASLYPYFTLL 141 (207)
Q Consensus 131 e~~~yp~fTLL 141 (207)
++++|++|+-+
T Consensus 522 ~~~n~~~F~~F 532 (573)
T PLN00197 522 QPDNWRRFVAF 532 (573)
T ss_pred ChhhHHHHHHH
Confidence 99999999744
No 227
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=24.19 E-value=2.5e+02 Score=23.63 Aligned_cols=47 Identities=26% Similarity=0.349 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEE
Q psy15557 71 VLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVY 123 (207)
Q Consensus 71 VLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~ 123 (207)
.+-.|++.+.+++|+.+++|. |+. ...+++.+.+++ ..++ ++++|.-
T Consensus 209 ~li~a~~~l~~~~~~~~l~iv-G~g-~~~~~~~~~~~~---~~~~-~~v~~~g 255 (358)
T cd03812 209 FLIEIFAELLKKNPNAKLLLV-GDG-ELEEEIKKKVKE---LGLE-DKVIFLG 255 (358)
T ss_pred HHHHHHHHHHHhCCCeEEEEE-eCC-chHHHHHHHHHh---cCCC-CcEEEec
Confidence 456788888888899988887 442 233455555543 2333 4555543
No 228
>COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=24.14 E-value=41 Score=25.00 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=11.0
Q ss_pred ccCCccEEEEEccC
Q psy15557 48 SYNVLKTVAFFHPY 61 (207)
Q Consensus 48 ~~~~~~~VgFFHPy 61 (207)
.+++..+||||||.
T Consensus 53 v~~neQ~igiF~Pe 66 (66)
T COG3529 53 VRKNEQVIGIFPPE 66 (66)
T ss_pred hCccceeeeccCCC
Confidence 45566899999994
No 229
>PF04693 DDE_Tnp_2: Archaeal putative transposase ISC1217; InterPro: IPR006783 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element. Transposases have been grouped into various families [, , ]. This family includes the putative transposase ISC1217 from archaebacteria. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=24.01 E-value=70 Score=30.32 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=29.0
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEE
Q psy15557 86 YKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINF 121 (207)
Q Consensus 86 ~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~F 121 (207)
..-..||.|...++++|.+.-+.|++|+.-.+.++=
T Consensus 252 ~~rYLfTTDLsLS~EeIie~y~~RW~IE~~~RdvKa 287 (327)
T PF04693_consen 252 GRRYLFTTDLSLSAEEIIEAYMMRWDIEVLHRDVKA 287 (327)
T ss_pred CceEEEEcCCCCCHHHHHHHHhcccceecccccccc
Confidence 344679999999999999999999999876455543
No 230
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=23.95 E-value=1.3e+02 Score=27.23 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=29.3
Q ss_pred CcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 66 GGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 66 GGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
.|+|..|-.|.+.+.+++|+.+.+|. ||.....+++.+.+++
T Consensus 243 ~~~~~~ll~A~~~l~~~~~~~~liiv-G~g~~r~~~l~~~~~~ 284 (425)
T PRK05749 243 EGEEELVLDAHRALLKQFPNLLLILV-PRHPERFKEVEELLKK 284 (425)
T ss_pred chHHHHHHHHHHHHHHhCCCcEEEEc-CCChhhHHHHHHHHHh
Confidence 35678888999988888899888775 6522223567777655
No 231
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=23.95 E-value=1e+02 Score=30.86 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=41.5
Q ss_pred chhHHHHHHHHHHhhCCCceEEE--EcCCC------CCChhHHHHHHHHhcceeecCCceEEEEc
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYI--YTGDV------DASPSEIIKRAHQRFNIVLPEQAINFVYL 124 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vI--YTgd~------~~~~~~il~~a~~rF~i~L~~~~i~FV~L 124 (207)
-+.=|+.|++.|.+.+|..++.+ .||+. +.--+-++++.+++||+++.-.+....|-
T Consensus 418 d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~L~~~~~vev~~~~p~V~yr 482 (689)
T TIGR00484 418 DQEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREFKVEANVGAPQVAYR 482 (689)
T ss_pred cHHHHHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHHHHHHhCCeeEecCCEEEEe
Confidence 45568999999999999887755 34432 34567789999999998877555555553
No 232
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=23.88 E-value=1.8e+02 Score=29.82 Aligned_cols=52 Identities=21% Similarity=0.193 Sum_probs=36.7
Q ss_pred EccCCCCCCcchhHH-------HHHHHHHHhh-C-CCceEEEEcCCCCCChhHHHHHHHHhcc
Q psy15557 58 FHPYCNAGGGGERVL-------WTAVLALHQK-Y-PDYKIYIYTGDVDASPSEIIKRAHQRFN 111 (207)
Q Consensus 58 FHPycnaGGGGERVL-------W~Ai~alq~~-~-~~~~~vIYTgd~~~~~~~il~~a~~rF~ 111 (207)
-|||.+..-|-|.=+ =..+++.-++ | |++-+++=+|| .+++++.+.+++-|+
T Consensus 148 ~HPy~~~~iGt~esL~~it~~t~edL~~F~~~~Y~p~NmvLvIvGd--vs~eel~~l~e~~f~ 208 (696)
T TIGR02110 148 GHPLRRFHAGSRDSLALPNTAFQQALRDFHRRHYQAGNMQLWLQGP--QSLDELEQLAARFGA 208 (696)
T ss_pred CCCCCCCCCCCHHHHhCcccchHHHHHHHHHHhcchhcEEEEEEeC--CCHHHHHHHHHHHhC
Confidence 699997766665544 2344454444 3 67777777898 789999999988886
No 233
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=23.69 E-value=1.4e+02 Score=27.04 Aligned_cols=44 Identities=25% Similarity=0.502 Sum_probs=31.9
Q ss_pred chhHHHHHHHHHHhhC-CCceEEEEcCCC----CCChhHHHHHHHHhcce
Q psy15557 68 GERVLWTAVLALHQKY-PDYKIYIYTGDV----DASPSEIIKRAHQRFNI 112 (207)
Q Consensus 68 GERVLW~Ai~alq~~~-~~~~~vIYTgd~----~~~~~~il~~a~~rF~i 112 (207)
||.=|=.||+.+.+++ |+ -++|+|+.. +-|-+.+.+++++++++
T Consensus 58 ~~~kL~~~i~~~~~~~~P~-~i~v~~sC~~~iIGdD~~~v~~~~~~~~~~ 106 (398)
T PF00148_consen 58 GEEKLREAIKEIAEKYKPK-AIFVVTSCVPEIIGDDIEAVARELQEEYGI 106 (398)
T ss_dssp SHHHHHHHHHHHHHHHSTS-EEEEEE-HHHHHTTTTHHHHHHHHHHHHSS
T ss_pred chhhHHHHHHHHHhcCCCc-EEEEECCCCHHHhCCCHHHHHHHhhcccCC
Confidence 6666669999999886 64 455555542 34889999999998876
No 234
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=23.58 E-value=5e+02 Score=22.73 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCCEEEECCCccchHHHHHHhCCCeeEEeee
Q psy15557 148 MILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIH 189 (207)
Q Consensus 148 i~L~~EAl~~~~PDVfIDTmGyaFtyPl~k~l~g~~V~~YvH 189 (207)
+.-..+.+.+..||+.|-+.+|.- +++....|+|+++-.|
T Consensus 82 ~~~~~~~l~~~~pDlVi~d~~~~~--~~aA~~~~iP~i~i~~ 121 (321)
T TIGR00661 82 IRREINIIREYNPDLIISDFEYST--VVAAKLLKIPVICISN 121 (321)
T ss_pred HHHHHHHHHhcCCCEEEECCchHH--HHHHHhcCCCEEEEec
Confidence 333456688899999998855444 5555577999884333
No 235
>cd03362 TOPRIM_TopoIA_TopoIII TOPRIM_TopoIA_TopoIII: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to topoisomerase III. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving one strand of the DNA duplex, covalently linking to the 5' phosphoryl end of the DNA break and, allowing the other strand of the duplex to pass through the gap. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=23.30 E-value=1.1e+02 Score=24.51 Aligned_cols=36 Identities=11% Similarity=0.028 Sum_probs=27.6
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcce
Q psy15557 74 TAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNI 112 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i 112 (207)
..|+.+.+ ++..+|--+|.|.++|.|..++.+..+.
T Consensus 90 ~~ik~l~~---~ad~ii~atD~DrEGE~I~~~i~~~~~~ 125 (151)
T cd03362 90 KVLKKLAK---RADEIVIATDADREGELIGREILEYAKC 125 (151)
T ss_pred HHHHHHHh---CCCeEEEccCCCccccHHHHHHHHHhCC
Confidence 44444444 5677777889999999999999888775
No 236
>PLN02275 transferase, transferring glycosyl groups
Probab=23.20 E-value=5.4e+02 Score=22.97 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=21.2
Q ss_pred CCCCcchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 63 NAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 63 naGGGGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
..+|+.+|+-=.+.+-.++..-++.++-|.++
T Consensus 13 ~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~ 44 (371)
T PLN02275 13 GDFGRSPRMQYHALSLARQASFQVDVVAYGGS 44 (371)
T ss_pred cCCCCCHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 56778888876666555544445777777665
No 237
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=23.15 E-value=1.1e+02 Score=27.79 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCCChhH-------HHHHHHHhcceeecCCceEEE
Q psy15557 85 DYKIYIYTGDVDASPSE-------IIKRAHQRFNIVLPEQAINFV 122 (207)
Q Consensus 85 ~~~~vIYTgd~~~~~~~-------il~~a~~rF~i~L~~~~i~FV 122 (207)
...++|=.|+ ++.++ +-++|+++|||+|+ ..++++
T Consensus 257 HanfivN~g~--ata~di~~Li~~v~~~V~~~~gi~Le-~Ev~~~ 298 (302)
T PRK14652 257 HANFVTNLGG--ATARDVLALVRLARARVKERFGIALE-TEVRLL 298 (302)
T ss_pred ccCEEEECCC--CCHHHHHHHHHHHHHHHHHHHCCeee-EeeEEe
Confidence 4567777776 67764 45799999999998 445555
No 238
>cd08444 PBP2_Cbl The C-terminal substrate binding domain of LysR-type transcriptional regulator Cbl, which is required for expression of sulfate starvation-inducible (ssi) genes, contains the type 2 periplasmic binding fold. Cbl is a member of the LysR transcriptional regulators that comprise the largest family of prokaryotic transcription factor. Cbl shows high sequence similarity to CysB, the LysR-type transcriptional activator of genes involved in sulfate and thiosulfate transport, sulfate reduction, and cysteine synthesis. In Escherichia coli, the function of Cbl is required for expression of sulfate starvation-inducible (ssi) genes, coupled with the biosynthesis of cysteine from the organic sulfur sources (sulfonates). The ssi genes include the ssuEADCB and tauABCD operons encoding uptake systems for organosulfur compounds, aliphatic sulfonates, and taurine. The genes in these operons encode an ABC-type transport system required for uptake of aliphatic sulfonates and a desulfonati
Probab=23.06 E-value=1.6e+02 Score=22.33 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH-hcc
Q psy15557 69 ERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ-RFN 111 (207)
Q Consensus 69 ERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~-rF~ 111 (207)
.-++=.++.+.++++|++++-+.+++ .+++.+..++ +.+
T Consensus 12 ~~~l~~~l~~~~~~~P~v~l~i~~~~----~~~~~~~l~~g~~D 51 (198)
T cd08444 12 RYALPWVVQAFKEQFPNVHLVLHQGS----PEEIASMLANGQAD 51 (198)
T ss_pred hhhhhHHHHHHHHHCCCeEEEEEeCC----HHHHHHHHHCCCcc
Confidence 35677889999999999999998764 4667776664 444
No 239
>PF01515 PTA_PTB: Phosphate acetyl/butaryl transferase; InterPro: IPR002505 This entry contains both phosphate acetyltransferase 2.3.1.8 from EC: Acetyl-CoA + phosphate = CoA + acetyl phosphate and phosphate butaryltransferase 2.3.1.19 from EC: Butanoyl-CoA + phosphate = CoA + butanoyl phosphate These enzymes catalyse the transfer of an acetyl or butaryl group to orthophosphate.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 2AF3_D 1QZT_D 2AF4_D 1VMI_A 3UF6_B 3U9E_A 3TNG_A 4E4R_A 1R5J_A 1YCO_A ....
Probab=23.04 E-value=6e+02 Score=23.39 Aligned_cols=112 Identities=21% Similarity=0.221 Sum_probs=58.1
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeC
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEA 132 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~ 132 (207)
+.|+| +.|--||||=.|.++.++. .--.|--|| +++|-+.+++ -|++++ .++ .+++
T Consensus 15 krIv~------aeaeD~~vL~Aa~~~~~eg---ia~pILvG~----~~~I~~~a~~-~~l~l~--~~e--------Iid~ 70 (319)
T PF01515_consen 15 KRIVF------AEAEDERVLEAAKQAVEEG---IAKPILVGD----REEIREIAKE-LGLDLD--GFE--------IIDP 70 (319)
T ss_dssp EEEEE------S-TTSHHHHHHHHHHHHTT---SCEEEEES-----HHHHHHHHHH-TTC--T--TSE--------EE-T
T ss_pred CeEEE------eCCCCHHHHHHHHHHHHcC---ceEEEEEeC----hHHhcchhhh-cccccc--cce--------ecCc
Confidence 57777 4568899995555555553 322333464 6777777765 466655 244 4555
Q ss_pred CCCCchhhhhHHH-------------------HHHHHHHHHHhcCCCCEEEECCCc--cchH-HHHHHhCC---CeeEEe
Q psy15557 133 SLYPYFTLLGQSI-------------------GSMILGVEALLSFQPDIYIDTMGY--AFTY-PLFSYIGG---SKVACY 187 (207)
Q Consensus 133 ~~yp~fTLLgQsl-------------------GSi~L~~EAl~~~~PDVfIDTmGy--aFty-Pl~k~l~g---~~V~~Y 187 (207)
+..+++.-..+.+ =..+.|...+.+-.-|..+--.-+ ++.. |+.+..++ .++++.
T Consensus 71 ~~~~~~~~y~~~~~~lr~rKG~~~~~a~~~~~~~~~~a~~mv~~G~aD~lv~G~~~t~~~~lr~~l~~~~~~~~~~~~s~ 150 (319)
T PF01515_consen 71 EDSEKLEEYAEEYYELRQRKGMTPEEARREVRDPNYFAAMMVRLGDADALVKGLIHTTADMLRAVLQVIGGKPGVKVVSS 150 (319)
T ss_dssp TTSTTHHHHHHHHHHHHTTCTS-HHHHHHHTTSHHHHHHHHHHTTSSSEEEE-SSSHHHHHHHHHHHHTCBSTTSSS-EE
T ss_pred cccHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHcCCCCEEecCCCCCHHHHHHHHHHHHccCCCCcceEE
Confidence 5555554333322 122344444666678988853332 3344 66666663 345544
Q ss_pred e
Q psy15557 188 I 188 (207)
Q Consensus 188 v 188 (207)
+
T Consensus 151 ~ 151 (319)
T PF01515_consen 151 V 151 (319)
T ss_dssp E
T ss_pred E
Confidence 4
No 240
>cd08448 PBP2_LTTR_aromatics_like_2 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to regulators involved in the catabolism of aromatic compounds, contains type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type regulator similar to CbnR which is involved in the regulation of chlorocatechol breakdown. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Ve
Probab=22.98 E-value=3.1e+02 Score=20.08 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=27.6
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
+..++=.++..+++++|+.++-+.+++ .+++.+...+
T Consensus 11 ~~~~l~~~l~~~~~~~P~i~i~i~~~~----~~~~~~~l~~ 47 (197)
T cd08448 11 LYRGLPRILRAFRAEYPGIEVALHEMS----SAEQIEALLR 47 (197)
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEEeCC----HHHHHHHHHc
Confidence 456777899999999999999998764 3555555543
No 241
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=22.87 E-value=4.8e+02 Score=22.85 Aligned_cols=95 Identities=13% Similarity=0.119 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhHHHHHHHH
Q psy15557 71 VLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMIL 150 (207)
Q Consensus 71 VLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslGSi~L 150 (207)
.+-.|++.+.+++|+.++++=+|+ ....+++.+.+++.-++ ++++.. . .. ++.|...-+.--.=|...
T Consensus 206 ~l~~a~~~l~~~~~~~~~ii~~~~-~~~~~~~~~~~~~~~~~-----~v~~~~--~-~~--~~~~~~aDl~v~~sG~~~- 273 (380)
T PRK00025 206 PFLKAAQLLQQRYPDLRFVLPLVN-PKRREQIEEALAEYAGL-----EVTLLD--G-QK--REAMAAADAALAASGTVT- 273 (380)
T ss_pred HHHHHHHHHHHhCCCeEEEEecCC-hhhHHHHHHHHhhcCCC-----CeEEEc--c-cH--HHHHHhCCEEEECccHHH-
Confidence 445777777777888887776654 22334454444331021 122211 1 00 011111111100004433
Q ss_pred HHHHHhcCCCCEEEECCCccchHHHHHHh
Q psy15557 151 GVEALLSFQPDIYIDTMGYAFTYPLFSYI 179 (207)
Q Consensus 151 ~~EAl~~~~PDVfIDTmGyaFtyPl~k~l 179 (207)
.||+.--.|=|.+..+ .+|++-..+.+
T Consensus 274 -lEa~a~G~PvI~~~~~-~~~~~~~~~~~ 300 (380)
T PRK00025 274 -LELALLKVPMVVGYKV-SPLTFWIAKRL 300 (380)
T ss_pred -HHHHHhCCCEEEEEcc-CHHHHHHHHHH
Confidence 3888888888877766 56666665543
No 242
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=22.82 E-value=1.8e+02 Score=25.28 Aligned_cols=42 Identities=12% Similarity=-0.005 Sum_probs=31.7
Q ss_pred HHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCC
Q psy15557 73 WTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQ 117 (207)
Q Consensus 73 W~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~ 117 (207)
..+++.++++ +.++++-|+....+.+++.++. +++|+..+++
T Consensus 24 ~e~l~~L~~~--g~~~~~~Tnns~~~~~~~~~~l-~~~G~~~~~~ 65 (279)
T TIGR01452 24 PELLDRLARA--GKAALFVTNNSTKSRAEYALKF-ARLGFNGLAE 65 (279)
T ss_pred HHHHHHHHHC--CCeEEEEeCCCCCCHHHHHHHH-HHcCCCCChh
Confidence 5677777765 7889999998667888988887 4588866533
No 243
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=22.81 E-value=4.4e+02 Score=23.74 Aligned_cols=40 Identities=18% Similarity=0.399 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCC--CEEEECCCccchHHHHHHhCCCeeEEe
Q psy15557 147 SMILGVEALLSFQP--DIYIDTMGYAFTYPLFSYIGGSKVACY 187 (207)
Q Consensus 147 Si~L~~EAl~~~~P--DVfIDTmGyaFtyPl~k~l~g~~V~~Y 187 (207)
++.++..++..+.| .|.+++=+|+-....++ ..|.++..|
T Consensus 106 al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~-~~g~~~v~v 147 (396)
T PRK09257 106 ALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFE-AAGLEVKTY 147 (396)
T ss_pred HHHHHHHHHHHhCCCCeEEECCCCcccHHHHHH-HcCCcEEEE
Confidence 45555556654444 39999999998888888 467777543
No 244
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=22.56 E-value=28 Score=30.63 Aligned_cols=20 Identities=35% Similarity=0.614 Sum_probs=17.0
Q ss_pred cEEEEEccCCCCCCcchhHH
Q psy15557 53 KTVAFFHPYCNAGGGGERVL 72 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVL 72 (207)
..+.==||.|+.-+.|||||
T Consensus 202 v~lven~~~c~~n~~~~~vl 221 (249)
T cd01853 202 VSLVENHPRCRKNREGEKVL 221 (249)
T ss_pred EEEEeCCCcccCCCCCCeEC
Confidence 34556799999999999998
No 245
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=22.55 E-value=1.3e+02 Score=22.44 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=24.0
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhc
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRF 110 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF 110 (207)
|.| .+++.+..+. ++.++|-||+.. -++++++.|++..
T Consensus 48 gdR--~di~~~a~~~--~i~~iIltg~~~-~~~~v~~la~~~~ 85 (105)
T PF07085_consen 48 GDR--EDIQLAAIEA--GIACIILTGGLE-PSEEVLELAKELG 85 (105)
T ss_dssp TT---HHHHHHHCCT--TECEEEEETT-----HHHHHHHHHHT
T ss_pred CCc--HHHHHHHHHh--CCCEEEEeCCCC-CCHHHHHHHHHCC
Confidence 445 4556655555 589999999854 4577888887753
No 246
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=22.44 E-value=1.3e+02 Score=28.38 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=25.5
Q ss_pred CceEEEEcCCCCCChhHHH-------HHHHHhcceeecCCceEEEE
Q psy15557 85 DYKIYIYTGDVDASPSEII-------KRAHQRFNIVLPEQAINFVY 123 (207)
Q Consensus 85 ~~~~vIYTgd~~~~~~~il-------~~a~~rF~i~L~~~~i~FV~ 123 (207)
...++|=+|+ ++.+|++ ++|+++|||+|+ ..++++-
T Consensus 318 HanfiVN~G~--Ata~dvl~Li~~v~~~V~~~fGi~Le-~Ev~iig 360 (363)
T PRK13903 318 HTLALTNRGG--ATTADLVALAREVRDGVRDAFGVTLV-PEPVLVG 360 (363)
T ss_pred cCcEEEECCC--CCHHHHHHHHHHHHHHHHHHHCCeee-EeeEEEe
Confidence 3466776775 6775554 789999999998 4466653
No 247
>cd08459 PBP2_DntR_NahR_LinR_like The C-terminal substrate binding domain of LysR-type transcriptional regulators that are involved in the catabolism of dinitrotoluene, naphthalene and gamma-hexachlorohexane; contains the type 2 periplasmic binding fold. This CD includes LysR-like bacterial transcriptional regulators, DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. DntR from Burkholderia species controls genes encoding enzymes for oxidative degradation of the nitro-aromatic compound 2,4-dinitrotoluene. The active form of DntR is homotetrameric, consisting of a dimer of dimers. NahR is a salicylate-dependent transcription activator of the nah and sal operons for naphthalene degradation. Salicylic acid is an intermediate o
Probab=22.29 E-value=1.3e+02 Score=22.61 Aligned_cols=28 Identities=21% Similarity=0.068 Sum_probs=23.6
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCCC
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYIYTGDV 95 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vIYTgd~ 95 (207)
++-.+-..+..+++++|++++-+++++.
T Consensus 11 ~~~~l~~~l~~~~~~~P~v~v~i~~~~~ 38 (201)
T cd08459 11 EMYFLPRLLAALREVAPGVRIETVRLPV 38 (201)
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEEecCc
Confidence 4567788999999999999999998763
No 248
>COG1715 Mrr Restriction endonuclease [Defense mechanisms]
Probab=22.14 E-value=1.1e+02 Score=28.76 Aligned_cols=67 Identities=18% Similarity=0.275 Sum_probs=38.5
Q ss_pred eEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhHHHHHHHHHHHHHhcCCCCEEEEC
Q psy15557 87 KIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDT 166 (207)
Q Consensus 87 ~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslGSi~L~~EAl~~~~PDVfIDT 166 (207)
+-+=||||.+.|.- |+.|+--.+-||+.-.+|=+.-.-|.. |-..+.+.+. +..+-|||+|
T Consensus 192 ~~vg~sGDgGIdGi-----------I~~D~Lgld~iyiQAKR~~~tv~rpEI----q~FagaL~g~----kA~~GVFitT 252 (308)
T COG1715 192 QRVGYTGDGGIDGI-----------IKEDPLGLDRIYVQAKRWKNTVGRPEI----QEFAGALEGH----KAKRGVFITT 252 (308)
T ss_pred hhccccCCCCccce-----------eecccCCCeeEEEEeeecCCCcCCHHH----HHHHHHhhhh----ccCCcEEEEC
Confidence 45667777665543 666655566677666555222223333 4443433333 4467799999
Q ss_pred CCccch
Q psy15557 167 MGYAFT 172 (207)
Q Consensus 167 mGyaFt 172 (207)
.|+.-.
T Consensus 253 S~fs~~ 258 (308)
T COG1715 253 SGFSAG 258 (308)
T ss_pred CCCCHH
Confidence 997643
No 249
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=22.13 E-value=3.7e+02 Score=22.43 Aligned_cols=30 Identities=23% Similarity=0.200 Sum_probs=20.0
Q ss_pred chhhhhHHHHHHHHHHHHHhcCCCC-----EEEECCC
Q psy15557 137 YFTLLGQSIGSMILGVEALLSFQPD-----IYIDTMG 168 (207)
Q Consensus 137 ~fTLLgQslGSi~L~~EAl~~~~PD-----VfIDTmG 168 (207)
.++|+|.|+|+++-..=|.. .|| |.+|+.+
T Consensus 92 ~~~LvG~S~GG~va~~~a~~--~p~~v~~lvl~~~~~ 126 (276)
T TIGR02240 92 QVNAIGVSWGGALAQQFAHD--YPERCKKLILAATAA 126 (276)
T ss_pred ceEEEEECHHHHHHHHHHHH--CHHHhhheEEeccCC
Confidence 48899999999855544432 244 6777664
No 250
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=22.00 E-value=2.1e+02 Score=27.40 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=33.3
Q ss_pred EccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCC----CCChhHHHHHHHHhc
Q psy15557 58 FHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDV----DASPSEIIKRAHQRF 110 (207)
Q Consensus 58 FHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~----~~~~~~il~~a~~rF 110 (207)
++-.--.= |||.=|=.||+.+.++++---++|+|+.. .-|-+.+.++++++.
T Consensus 67 l~E~d~Vf-Gg~~~L~~aI~~~~~~~~P~~I~V~ttC~~eiIGDDi~~v~~~~~~~~ 122 (455)
T PRK14476 67 MDEVTTIL-GGDENVEEAILNICKKAKPKIIGLCTTGLTETRGDDVAGALKEIRARH 122 (455)
T ss_pred CCccceEe-CCHHHHHHHHHHHHHhhCCCEEEEeCcchHhhhhccHHHHHHHHHhhc
Confidence 33333344 45555669999998876545677777762 336677777777653
No 251
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=22.00 E-value=3.6e+02 Score=20.46 Aligned_cols=75 Identities=25% Similarity=0.304 Sum_probs=43.4
Q ss_pred HHHhhhhccCCccEEEEEccCCCCCCcchhHHHHHHHHHHhh-CCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCce
Q psy15557 41 YVSKKRKSYNVLKTVAFFHPYCNAGGGGERVLWTAVLALHQK-YPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAI 119 (207)
Q Consensus 41 ~~~~k~~~~~~~~~VgFFHPycnaGGGGERVLW~Ai~alq~~-~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i 119 (207)
+.+.+.+..+++.+|.+++-.... =|--.+..|+.-+.++ .++.+++|.. + .+.++-+.+..+..+ +. +++
T Consensus 4 ~~~~~~~~~~~~~~il~~g~~~~~--K~~~~li~a~~~l~~~~~~~~~l~i~G-~--~~~~~~~~~~~~~~~--~~-~~i 75 (172)
T PF00534_consen 4 KLREKLKIPDKKKIILFIGRLDPE--KGIDLLIEAFKKLKEKKNPNYKLVIVG-D--GEYKKELKNLIEKLN--LK-ENI 75 (172)
T ss_dssp HHHHHTTT-TTSEEEEEESESSGG--GTHHHHHHHHHHHHHHHHTTEEEEEES-H--CCHHHHHHHHHHHTT--CG-TTE
T ss_pred HHHHHcCCCCCCeEEEEEecCccc--cCHHHHHHHHHHHHhhcCCCeEEEEEc-c--ccccccccccccccc--cc-ccc
Confidence 344444455566788887765443 2345667888888764 7788888876 2 233333444444433 33 566
Q ss_pred EEEE
Q psy15557 120 NFVY 123 (207)
Q Consensus 120 ~FV~ 123 (207)
+|+.
T Consensus 76 ~~~~ 79 (172)
T PF00534_consen 76 IFLG 79 (172)
T ss_dssp EEEE
T ss_pred cccc
Confidence 6653
No 252
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=21.99 E-value=2.9e+02 Score=25.20 Aligned_cols=69 Identities=25% Similarity=0.305 Sum_probs=36.5
Q ss_pred HHHHhhCCCc-eEEEEcCCCCCChhHHHHHHHHhcce-eecCCceEEEEcCccceeeCCCCCchhhhhHHHHHHHHHHHH
Q psy15557 77 LALHQKYPDY-KIYIYTGDVDASPSEIIKRAHQRFNI-VLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEA 154 (207)
Q Consensus 77 ~alq~~~~~~-~~vIYTgd~~~~~~~il~~a~~rF~i-~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslGSi~L~~EA 154 (207)
+|+|+. |+. ..+|.||-. -..+.-+...+-|++ +.+ ..|. ...- =.++++|-++.+++.
T Consensus 1 ~~l~~~-~~~~~~li~tG~H--~~~~~g~~~~~~f~i~~~~------~~l~------~~~~----~~~~~~~~~~~~~~~ 61 (346)
T PF02350_consen 1 KALQKD-PGFELILIVTGQH--LDPEMGDTFFEGFGIPKPD------YLLD------SDSQ----SMAKSTGLAIIELAD 61 (346)
T ss_dssp -HHHCS-TTEEEEEEEECSS----CHHHHHHHHHTT--SEE------EE--------STTS-----HHHHHHHHHHHHHH
T ss_pred ChhhhC-CCCCEEEEEeCCC--CCHHHHHHHHhhCCCCCCC------cccc------cccc----hHHHHHHHHHHHHHH
Confidence 356654 454 556668853 223444555557777 333 3333 2221 146777777777665
Q ss_pred -HhcCCCCEEE
Q psy15557 155 -LLSFQPDIYI 164 (207)
Q Consensus 155 -l~~~~PDVfI 164 (207)
+.+..||+.+
T Consensus 62 ~~~~~~Pd~Vl 72 (346)
T PF02350_consen 62 VLEREKPDAVL 72 (346)
T ss_dssp HHHHHT-SEEE
T ss_pred HHHhcCCCEEE
Confidence 6778999887
No 253
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=21.98 E-value=79 Score=26.55 Aligned_cols=45 Identities=27% Similarity=0.617 Sum_probs=28.2
Q ss_pred CCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEE
Q psy15557 62 CNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVY 123 (207)
Q Consensus 62 cnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~ 123 (207)
++-|||--. ...++.+++|+.+++++- -.+.++.+++ .+|++|+.
T Consensus 105 vDvGGG~G~----~~~~l~~~~P~l~~~v~D------lp~v~~~~~~-------~~rv~~~~ 149 (241)
T PF00891_consen 105 VDVGGGSGH----FAIALARAYPNLRATVFD------LPEVIEQAKE-------ADRVEFVP 149 (241)
T ss_dssp EEET-TTSH----HHHHHHHHSTTSEEEEEE-------HHHHCCHHH-------TTTEEEEE
T ss_pred EeccCcchH----HHHHHHHHCCCCcceeec------cHhhhhcccc-------cccccccc
Confidence 455655433 335677889999999853 3556677776 36666655
No 254
>cd08417 PBP2_Nitroaromatics_like The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrate
Probab=21.90 E-value=2e+02 Score=21.37 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=26.9
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
+..++-..++..++++|+..+-+.+++ .+++.+..++
T Consensus 11 ~~~~~~~~i~~~~~~~P~i~l~~~~~~----~~~~~~~l~~ 47 (200)
T cd08417 11 EALLLPPLLARLRQEAPGVRLRFVPLD----RDDLEEALES 47 (200)
T ss_pred HHHHHHHHHHHHHhhCCCeEEEeccCC----HHHHHHHHHc
Confidence 345667788899999999999998764 3455555544
No 255
>cd08415 PBP2_LysR_opines_like The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate-domain of LysR-type transcriptional regulators, OccR and NocR, involved in the catabolism of opines and that of LysR for lysine biosynthesis which clustered together in phylogenetic trees. Opines, such as octopine and nopaline, are low molecular weight compounds found in plant crown gall tumors that are produced by the parasitic bacterium Agrobacterium. There are at least 30 different opines identified so far. Opines are utilized by tumor-colonizing bacteria as a source of carbon, nitrogen, and energy. NocR and OccR belong to the family of LysR-type transcriptional regulators that positively regulates the catabolism of nopaline and octopine, respectively. Both nopaline and octopalin are arginine derivatives. In Agrobacterium tumefa
Probab=21.67 E-value=1.8e+02 Score=21.49 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=26.8
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHH
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAH 107 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~ 107 (207)
+..++=..+.++++++|++++.+.+++ .+++.+..+
T Consensus 11 ~~~~l~~~l~~~~~~~P~i~l~i~~~~----~~~~~~~l~ 46 (196)
T cd08415 11 ALSLLPRAIARFRARHPDVRISLHTLS----SSTVVEAVL 46 (196)
T ss_pred cccccHHHHHHHHHHCCCcEEEEEecc----hHHHHHHHH
Confidence 445666888999999999999998864 355555543
No 256
>PF14191 YodL: YodL-like
Probab=21.43 E-value=51 Score=26.04 Aligned_cols=42 Identities=21% Similarity=0.438 Sum_probs=30.7
Q ss_pred HHHHHHHHHhh----CCCceEEEEcCCCCCChhHHHHHHHHhcceeec
Q psy15557 72 LWTAVLALHQK----YPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLP 115 (207)
Q Consensus 72 LW~Ai~alq~~----~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~ 115 (207)
-.....+++++ .++.-=.||+|.. ++.+.|+++-++||++.|
T Consensus 19 rF~~~~~l~~~g~~~~~~~Y~~VY~~~l--~~~~~Le~iy~~FN~~~P 64 (103)
T PF14191_consen 19 RFMSYEELKKAGGQPDPENYRLVYDGEL--DHTETLEDIYERFNVDHP 64 (103)
T ss_pred cccCHHHHHHcCCCCChHHceEEEEEec--CCCCCHHHHHHHhCcCCC
Confidence 34455666664 2345668899984 478899999999999775
No 257
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=21.42 E-value=2.4e+02 Score=26.81 Aligned_cols=52 Identities=12% Similarity=0.201 Sum_probs=34.4
Q ss_pred EccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCC----CCChhHHHHHHHHhc
Q psy15557 58 FHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDV----DASPSEIIKRAHQRF 110 (207)
Q Consensus 58 FHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~----~~~~~~il~~a~~rF 110 (207)
+|-.--.=| ||+=|=.||+.+.++++---+.|+|+.. +-|-+.+.+++++++
T Consensus 66 l~E~d~VfG-g~~~L~~~I~~~~~~~~P~~I~V~ttC~~eiIGDDi~~v~~~~~~e~ 121 (432)
T TIGR01285 66 MDEVSTILG-GDEHIEEAIDTLCQRNKPKAIGLLSTGLTETRGEDIARVVRQFREKH 121 (432)
T ss_pred CCCCceEEC-cHHHHHHHHHHHHHhcCCCEEEEeCCCcccccccCHHHHHHHHHhhc
Confidence 333333444 4455669999999887555677787763 237777888887763
No 258
>TIGR03491 RecB family nuclease, putative, TM0106 family. Members of this uncharacterized protein family are found broadly but sporadically among bacteria. The N-terminal region is homologous to the Cas4 protein of CRISPR systems, although this protein family shows no signs of association with CRISPR repeats.
Probab=21.40 E-value=1.5e+02 Score=28.30 Aligned_cols=52 Identities=27% Similarity=0.615 Sum_probs=40.9
Q ss_pred EccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhccee
Q psy15557 58 FHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIV 113 (207)
Q Consensus 58 FHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~ 113 (207)
|||+-+-.+-.||..|.+..++.+.+|+..++-|.+. + ...+++-.++++..
T Consensus 317 ~~~fla~~~~~E~~~~~~f~~~l~~~~~~~i~hY~~~-e---~~~l~rla~~~~~~ 368 (457)
T TIGR03491 317 YRPFLAEDPNTEELAWQQFLQLLQSYPDAPIYHYGET-E---KDSLRRLAKRYGTP 368 (457)
T ss_pred eeeeecCCchHHHHHHHHHHHHHHHCCCCeEEeeCHH-H---HHHHHHHHHHcCCC
Confidence 7888888888999999999999999999999999965 2 33455555666643
No 259
>cd08449 PBP2_XapR The C-terminal substrate binding domain of LysR-type transcriptional regulator XapR involved in xanthosine catabolism, contains the type 2 periplasmic binding fold. In Escherichia coli, XapR is a positive regulator for the expression of xapA gene, encoding xanthosine phosphorylase, and xapB gene, encoding a polypeptide similar to the nucleotide transport protein NupG. As an operon, the expression of both xapA and xapB is fully dependent on the presence of both XapR and the inducer xanthosine. Expression of the xapR is constitutive but not auto-regulated, unlike many other LysR family proteins. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their
Probab=21.38 E-value=2.2e+02 Score=20.97 Aligned_cols=35 Identities=14% Similarity=0.106 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHH
Q psy15557 69 ERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAH 107 (207)
Q Consensus 69 ERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~ 107 (207)
..++-..++.+++++|++++-+.+++ .+++.+..+
T Consensus 12 ~~~l~~~l~~~~~~~P~i~i~~~~~~----~~~~~~~l~ 46 (197)
T cd08449 12 WGGLGPALRRFKRQYPNVTVRFHELS----PEAQKAALL 46 (197)
T ss_pred hhhHHHHHHHHHHHCCCeEEEEEECC----HHHHHHHHh
Confidence 35678889999999999999998754 345555544
No 260
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=21.33 E-value=4.8e+02 Score=22.88 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=20.4
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
++||++=|+- +...-.-+..+++...++..+..+++++++
T Consensus 25 ~~Igvv~~~~--~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~ 64 (330)
T PRK15395 25 TRIGVTIYKY--DDNFMSVVRKAIEKDAKAAPDVQLLMNDSQ 64 (330)
T ss_pred ceEEEEEecC--cchHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 5789887753 222333333444444444334556655554
No 261
>cd08430 PBP2_IlvY The C-terminal substrate binding of LysR-type transcriptional regulator IlvY, which activates the expression of ilvC gene that encoding acetohydroxy acid isomeroreductase for the biosynthesis of branched amino acids; contains the type 2 periplasmic binding fold. In Escherichia coli, IlvY is required for the regulation of ilvC gene expression that encodes acetohydroxy acid isomeroreductase (AHIR), a key enzyme in the biosynthesis of branched-chain amino acids (isoleucine, valine, and leucine). The ilvGMEDA operon genes encode remaining enzyme activities required for the biosynthesis of these amino acids. Activation of ilvC transcription by IlvY requires the additional binding of a co-inducer molecule (either alpha-acetolactate or alpha-acetohydoxybutyrate, the substrates for AHIR) to a preformed complex of IlvY protein-DNA. Like many other LysR-family members, IlvY negatively auto-regulates the transcription of its own divergently transcribed ilvY gene in an inducer-i
Probab=21.31 E-value=1.8e+02 Score=21.43 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 70 RVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 70 RVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
..|=..+.++++++|++++-++++. .+++.+...+
T Consensus 13 ~~l~~~l~~~~~~~P~v~l~~~~~~----~~~~~~~l~~ 47 (199)
T cd08430 13 SFLPPILERFRAQHPQVEIKLHTGD----PADAIDKVLN 47 (199)
T ss_pred eeccHHHHHHHHHCCCceEEEEeCC----HHHHHHHHHC
Confidence 4455778999999999999998764 4556655543
No 262
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=21.18 E-value=1.5e+02 Score=25.58 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=13.6
Q ss_pred HHHHHHHhhCCCceEEEEcCC
Q psy15557 74 TAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd 94 (207)
.++..+.+++++++. +.+|+
T Consensus 184 ~~l~~ll~~~~~v~~-vl~GH 203 (275)
T PRK11148 184 HELAEVLAKFPNVKA-ILCGH 203 (275)
T ss_pred HHHHHHHhcCCCceE-EEecc
Confidence 466677777777765 45777
No 263
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=21.11 E-value=3.8e+02 Score=23.85 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=13.2
Q ss_pred CchhhhhHHHHHHHHHH
Q psy15557 136 PYFTLLGQSIGSMILGV 152 (207)
Q Consensus 136 p~fTLLgQslGSi~L~~ 152 (207)
.++.++|.|+|+.+-..
T Consensus 99 ~~v~LvG~SmGG~vAl~ 115 (266)
T TIGR03101 99 PPVTLWGLRLGALLALD 115 (266)
T ss_pred CCEEEEEECHHHHHHHH
Confidence 45889999999986443
No 264
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=21.08 E-value=3.8e+02 Score=20.72 Aligned_cols=47 Identities=21% Similarity=0.412 Sum_probs=33.8
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCc
Q psy15557 74 TAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYR 126 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~ 126 (207)
..|+.+.+.+|+.+.|. -||.+-..-+|-+.+.++| |++|.-|++|.
T Consensus 53 ~~i~~i~~~fP~~kfiL-IGDsgq~DpeiY~~ia~~~-----P~~i~ai~IR~ 99 (100)
T PF09949_consen 53 DNIERILRDFPERKFIL-IGDSGQHDPEIYAEIARRF-----PGRILAIYIRD 99 (100)
T ss_pred HHHHHHHHHCCCCcEEE-EeeCCCcCHHHHHHHHHHC-----CCCEEEEEEEe
Confidence 78899999999988776 4665444466777777765 37777788764
No 265
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=20.92 E-value=1.6e+02 Score=25.45 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=28.1
Q ss_pred CCCCEEEECCCccchHHHHHHhCCCeeEEeeeCc
Q psy15557 158 FQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYP 191 (207)
Q Consensus 158 ~~PDVfIDTmGyaFtyPl~k~l~g~~V~~YvHYP 191 (207)
..||++|-+....+..++.+.-..++.+.++|-.
T Consensus 98 ~~~diii~~~~~~~~~~~~~~~~~~~~i~~~h~~ 131 (372)
T cd04949 98 TKPDVFILDRPTLDGQALLNMKKAAKVVVVLHSN 131 (372)
T ss_pred CCCCEEEECCccccchhHHhccCCceEEEEEChH
Confidence 7899999999888887788766678888999943
No 266
>cd08469 PBP2_PnbR The C-terminal substrate binding domain of LysR-type transcriptional regulator PnbR, which is involved in regulating the pnb genes encoding enzymes for 4-nitrobenzoate catabolism, contains the type 2 periplasmic binding fold. PnbR is the regulator of one or both of the two pnb genes that encoding enzymes for 4-nitrobenzoate catabolism. In Pseudomonas putida strain, pnbA encodes a 4-nitrobenzoate reductase, which is responsible for catalyzing the direct reduction of 4-nitrobenzoate to 4-hydroxylaminobenzoate, and pnbB encodes a 4-hydroxylaminobenzoate lyase, which catalyzes the conversion of 4-hydroxylaminobenzoate to 3, 4-dihydroxybenzoic acid and ammonium. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft bet
Probab=20.81 E-value=1.2e+02 Score=23.41 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=27.2
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHH
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAH 107 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~ 107 (207)
++.++-.+++++++++|++++-+.+++ .+++.+..+
T Consensus 11 ~~~~l~~~l~~f~~~~P~v~l~i~~~~----~~~~~~~l~ 46 (221)
T cd08469 11 TAVLLPALVRRLETEAPGIDLRIRPVT----RLDLAEQLD 46 (221)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEeeCC----hhhHHHHHH
Confidence 456788899999999999999998765 334454444
No 267
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=20.79 E-value=2.8e+02 Score=18.79 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=31.5
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhC--CCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKY--PDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~--~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
..+-|+-+.|... ++ .=..++.+++++ ++..++.-+.|.+ +++++.+-+++
T Consensus 22 ~ll~f~~~~C~~C---~~-~~~~l~~~~~~~~~~~~~~~~v~~d~~-~~~~~~~~~~~ 74 (116)
T cd02966 22 VLVNFWASWCPPC---RA-EMPELEALAKEYKDDGVEVVGVNVDDD-DPAAVKAFLKK 74 (116)
T ss_pred EEEEeecccChhH---HH-HhHHHHHHHHHhCCCCeEEEEEECCCC-CHHHHHHHHHH
Confidence 3455666677543 34 346777788777 5666665566644 57777766655
No 268
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=20.75 E-value=3.5e+02 Score=22.18 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=18.4
Q ss_pred HHHHHhcCCCCEEEECCCccc
Q psy15557 151 GVEALLSFQPDIYIDTMGYAF 171 (207)
Q Consensus 151 ~~EAl~~~~PDVfIDTmGyaF 171 (207)
..+.+.+..||+.+-.||-|=
T Consensus 91 i~~~I~~~~pdiv~vglG~Pk 111 (171)
T cd06533 91 IIERINASGADILFVGLGAPK 111 (171)
T ss_pred HHHHHHHcCCCEEEEECCCCH
Confidence 567889999999999999873
No 269
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=20.72 E-value=4.6e+02 Score=23.05 Aligned_cols=65 Identities=11% Similarity=0.238 Sum_probs=0.0
Q ss_pred CCccEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEE
Q psy15557 50 NVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFV 122 (207)
Q Consensus 50 ~~~~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV 122 (207)
++..++...||--|.| -|-..+-.|++.+.+++|+.+ ++..++ ...++.++.++..+ ..+++.|+
T Consensus 196 ~~~~vl~~~hr~~~~~-k~~~~ll~a~~~l~~~~~~~~-~vi~~~---~~~~~~~~~~~~~~---~~~~v~~~ 260 (365)
T TIGR00236 196 DKRYILLTLHRRENVG-EPLENIFKAIREIVEEFEDVQ-IVYPVH---LNPVVREPLHKHLG---DSKRVHLI 260 (365)
T ss_pred CCCEEEEecCchhhhh-hHHHHHHHHHHHHHHHCCCCE-EEEECC---CChHHHHHHHHHhC---CCCCEEEE
No 270
>PRK03094 hypothetical protein; Provisional
Probab=20.62 E-value=1.4e+02 Score=22.80 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=20.5
Q ss_pred CCceEEEEcCCC-------------------CCChhHHHHHHHHhc
Q psy15557 84 PDYKIYIYTGDV-------------------DASPSEIIKRAHQRF 110 (207)
Q Consensus 84 ~~~~~vIYTgd~-------------------~~~~~~il~~a~~rF 110 (207)
++..++||||.. +.|++||.+.+++|.
T Consensus 34 ~~~Da~VitG~d~n~mgi~d~~t~~pVI~A~G~TaeEI~~~ve~r~ 79 (80)
T PRK03094 34 QGCDCCVVTGQDSNVMGIADTSTKGSVITASGLTADEICQQVESRL 79 (80)
T ss_pred CCcCEEEEeCCCcceecccccccCCcEEEcCCCCHHHHHHHHHHhh
Confidence 457889999852 248899999988874
No 271
>PRK00865 glutamate racemase; Provisional
Probab=20.61 E-value=2.7e+02 Score=24.43 Aligned_cols=50 Identities=30% Similarity=0.529 Sum_probs=33.5
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCC------CCChhHHHHHHHHhcc
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDV------DASPSEIIKRAHQRFN 111 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~------~~~~~~il~~a~~rF~ 111 (207)
+.||+| ++|=||= ..+++++++.|+.. +||-||. +.|+++|.+.+.+-.+
T Consensus 6 ~~Igvf----DSGiGGL----tvl~~i~~~lp~~~-~iY~~D~~~~PYG~ks~~~i~~~~~~~~~ 61 (261)
T PRK00865 6 APIGVF----DSGVGGL----TVLREIRRLLPDEH-IIYVGDTARFPYGEKSEEEIRERTLEIVE 61 (261)
T ss_pred CeEEEE----ECCccHH----HHHHHHHHHCCCCC-EEEEecCCCCCCCCCCHHHHHHHHHHHHH
Confidence 469988 3454554 44577888888775 4677775 3588888887766443
No 272
>PRK12740 elongation factor G; Reviewed
Probab=20.57 E-value=1.3e+02 Score=29.84 Aligned_cols=58 Identities=17% Similarity=0.254 Sum_probs=43.0
Q ss_pred cchhHHHHHHHHHHhhCCCceEEE--EcCCC------CCChhHHHHHHHHhcceeecCCceEEEEc
Q psy15557 67 GGERVLWTAVLALHQKYPDYKIYI--YTGDV------DASPSEIIKRAHQRFNIVLPEQAINFVYL 124 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~~~vI--YTgd~------~~~~~~il~~a~~rF~i~L~~~~i~FV~L 124 (207)
+-+.=|+.|++.+++.+|..++.. -||.. +.--+-++++.+++||+++.-.+....|-
T Consensus 398 ~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~~~~v~~~~p~V~yr 463 (668)
T PRK12740 398 GDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREYGVEVETGPPQVPYR 463 (668)
T ss_pred chHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCceeEecCCeeEEe
Confidence 557889999999999999887765 34432 24567789999999998877555555553
No 273
>cd08467 PBP2_SyrM The C-terminal substrate binding of LysR-type symbiotic regulator SyrM, which activates expression of nodulation gene NodD3, contains the type 2 periplasmic binding fold. Rhizobium is a nitrogen fixing bacteria present in the roots of leguminous plants, which fixes atmospheric nitrogen to the soil. Most Rhizobium species possess multiple nodulation (nod) genes for the development of nodules. For example, Rhizobium meliloti possesses three copies of nodD genes. NodD1 and NodD2 activate nod operons when Rhizobium is exposed to inducers synthesized by the host plant, while NodD3 acts independent of plant inducers and requires the symbiotic regulator SyrM for nod gene expression. SyrM activates the expression of the regulatory nodulation gene nodD3. In turn, NodD3 activates expression of syrM. In addition, SyrM is involved in exopolysaccharide synthesis. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are
Probab=20.57 E-value=1.4e+02 Score=22.74 Aligned_cols=37 Identities=11% Similarity=0.022 Sum_probs=28.0
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
+..++-..++.+++++|+.++-+.+++. +++.+++++
T Consensus 11 ~~~~l~~~l~~~~~~~P~i~l~~~~~~~----~~~~~~l~~ 47 (200)
T cd08467 11 EVALLPRLAPRLRERAPGLDLRLCPIGD----DLAERGLEQ 47 (200)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEecCCc----ccHHHHhhC
Confidence 4567888899999999999999998763 344555544
No 274
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=20.52 E-value=2.4e+02 Score=20.42 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=34.2
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCc-eEEEEcCCCCCChhHHHHHHHHhcceee
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDY-KIYIYTGDVDASPSEIIKRAHQRFNIVL 114 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~-~~vIYTgd~~~~~~~il~~a~~rF~i~L 114 (207)
..|-|.-|.|...--=+.++-.+.+.+++.+++. .+.++.-|.+.. ++..++|||+-
T Consensus 21 vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-----~~l~~~~~v~~ 78 (108)
T cd02996 21 VLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-----SDIADRYRINK 78 (108)
T ss_pred EEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-----HHHHHhCCCCc
Confidence 4678889999888444455555555555555542 455555553332 34568888863
No 275
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=20.52 E-value=2.1e+02 Score=23.04 Aligned_cols=42 Identities=26% Similarity=0.216 Sum_probs=32.5
Q ss_pred cEEEEEccCCCCCC-----cchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 53 KTVAFFHPYCNAGG-----GGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 53 ~~VgFFHPycnaGG-----GGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
.+.+|+++..+.+. ..+......++.++++.|+.++++=-|.
T Consensus 27 vi~~f~~v~~~~~~~~~~~~~~~~~~~~i~~l~~~~~g~kv~~sigg 73 (210)
T cd00598 27 IIYAFAEISSDGSLNLFGDKSEEPLKGALEELASKKPGLKVLISIGG 73 (210)
T ss_pred EEEeeEEECCCCCEecccCcccHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 46789999776543 3457788999999998889988887664
No 276
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=20.51 E-value=72 Score=27.96 Aligned_cols=43 Identities=21% Similarity=0.482 Sum_probs=33.6
Q ss_pred CCCcchhHHHHHHHHHHhhCCCceEEEEcCCC--------CCChhHHHHHHHHhcceeec
Q psy15557 64 AGGGGERVLWTAVLALHQKYPDYKIYIYTGDV--------DASPSEIIKRAHQRFNIVLP 115 (207)
Q Consensus 64 aGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~--------~~~~~~il~~a~~rF~i~L~ 115 (207)
.|+|.+|.+| |.+-.+.+|.-+. .-+-++.++.+++++||+++
T Consensus 58 ~gd~~~~~~~---------yDGkt~Tl~~~~~n~Ya~~~aP~tid~~i~~l~~~~gi~~P 108 (214)
T PF09865_consen 58 RGDGADREFY---------YDGKTFTLYDPNQNVYAQADAPGTIDAAIDYLRDKYGIELP 108 (214)
T ss_pred EcCCcceEEE---------ECCCEEEEEcCcCCeEEeccCCCCHHHHHHHHHHhhCCCcc
Confidence 5667777665 6778888885543 34889999999999999987
No 277
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=20.46 E-value=1.6e+02 Score=24.44 Aligned_cols=49 Identities=22% Similarity=0.299 Sum_probs=35.2
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhccee
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIV 113 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~ 113 (207)
.+|=|+.|.|..+ +++-..+..+.++||+++++ .-|. +. . .+.++|++.
T Consensus 86 VVV~Fya~wc~~C----k~m~~~l~~LA~~~~~vkF~--kVd~--d~--~--~l~~~f~v~ 134 (175)
T cd02987 86 VVVHIYEPGIPGC----AALNSSLLCLAAEYPAVKFC--KIRA--SA--T--GASDEFDTD 134 (175)
T ss_pred EEEEEECCCCchH----HHHHHHHHHHHHHCCCeEEE--EEec--cc--h--hhHHhCCCC
Confidence 4556888999888 99999999999999876554 3332 22 2 566778875
No 278
>cd08420 PBP2_CysL_like C-terminal substrate binding domain of LysR-type transcriptional regulator CysL, which activates the transcription of the cysJI operon encoding sulfite reductase, contains the type 2 periplasmic binding fold. CysL, also known as YwfK, is a regular of sulfur metabolism in Bacillus subtilis. Sulfur is required for the synthesis of proteins and essential cofactors in all living organism. Sulfur can be assimilated either from inorganic sources (sulfate and thiosulfate), or from organic sources (sulfate esters, sulfamates, and sulfonates). CysL activates the transcription of the cysJI operon encoding sulfite reductase, which reduces sulfite to sulfide. Both cysL mutant and cysJI mutant are unable to grow using sulfate or sulfite as the sulfur source. Like other LysR-type regulators, CysL also negatively regulates its own transcription. In Escherichia coli, three LysR-type activators are involved in the regulation of sulfur metabolism: CysB, Cbl and MetR. The topology
Probab=20.41 E-value=3.5e+02 Score=19.71 Aligned_cols=56 Identities=16% Similarity=0.315 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH-hcceee-----cCCceEEEEcCccc
Q psy15557 69 ERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ-RFNIVL-----PEQAINFVYLYRRK 128 (207)
Q Consensus 69 ERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~-rF~i~L-----~~~~i~FV~Lr~r~ 128 (207)
...+-..+..+++++|+.++-+.+++ .+++.+..++ +.++-+ +++++....|...+
T Consensus 12 ~~~l~~~l~~~~~~~P~~~l~~~~~~----~~~~~~~l~~g~~D~~i~~~~~~~~~~~~~~l~~~~ 73 (201)
T cd08420 12 EYLLPRLLARFRKRYPEVRVSLTIGN----TEEIAERVLDGEIDLGLVEGPVDHPDLIVEPFAEDE 73 (201)
T ss_pred hhhhHHHHHHHHHHCCCceEEEEeCC----cHHHHHHHHCCCccEEEecCCCCCcceEEEeecCcc
Confidence 46777889999999999999998764 3556665543 333322 12456666665533
No 279
>cd08451 PBP2_BudR The C-terminal substrate binding domain of LysR-type transcrptional regulator BudR, which is responsible for activation of the expression of the butanediol operon genes; contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of BudR regulator, which is responsible for induction of the butanediol formation pathway under fermentative growth conditions. Three enzymes are involved in the production of 1 mol of 2,3 butanediol from the condensation of 2 mol of pyruvate with acetolactate and acetoin as intermediates: acetolactate synthetase, acetolactate decarboxylase, and acetoin reductase. In Klebsiella terrigena, BudR regulates the expression of the budABC operon genes, encoding these three enzymes of the butanediol pathway. In many bacterial species, the use of this pathway can prevent intracellular acidification by diverting metabolism from acid production to the formation of neutral compounds (acetoin and butanediol). This substra
Probab=20.38 E-value=2e+02 Score=21.24 Aligned_cols=35 Identities=11% Similarity=0.339 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 70 RVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 70 RVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
.++=.+++++++++|++++-+.+++ .+++.+...+
T Consensus 14 ~~l~~~l~~~~~~~P~i~l~i~~~~----~~~~~~~l~~ 48 (199)
T cd08451 14 PLVPGLIRRFREAYPDVELTLEEAN----TAELLEALRE 48 (199)
T ss_pred cccHHHHHHHHHHCCCcEEEEecCC----hHHHHHHHHC
Confidence 4565789999999999999998865 2455554444
No 280
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=20.37 E-value=58 Score=24.38 Aligned_cols=80 Identities=18% Similarity=0.311 Sum_probs=40.6
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCcc-ceeeC-CCCCchhhhhHHHHHHHHH
Q psy15557 74 TAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRR-KFVEA-SLYPYFTLLGQSIGSMILG 151 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r-~lve~-~~yp~fTLLgQslGSi~L~ 151 (207)
.-.++|+++ ++++.+.|++ +.-+.+ +. ..++|+.+... .+-+. .....+.-+.+...++.-.
T Consensus 17 ala~~L~~r--Gh~V~~~~~~------~~~~~v-~~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (139)
T PF03033_consen 17 ALARALRRR--GHEVRLATPP------DFRERV-EA-------AGLEFVPIPGDSRLPRSLEPLANLRRLARLIRGLEEA 80 (139)
T ss_dssp HHHHHHHHT--T-EEEEEETG------GGHHHH-HH-------TT-EEEESSSCGGGGHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHhcc--CCeEEEeecc------cceecc-cc-------cCceEEEecCCcCcCcccchhhhhhhHHHHhhhhhHH
Confidence 345778887 8888887754 333444 33 33455555554 11110 0111122223333445555
Q ss_pred HHHHhcCCCCEEEECCCc
Q psy15557 152 VEALLSFQPDIYIDTMGY 169 (207)
Q Consensus 152 ~EAl~~~~PDVfIDTmGy 169 (207)
.+.+.+..||..++..|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~ 98 (139)
T PF03033_consen 81 MRILARFRPDLVVAAGGY 98 (139)
T ss_dssp HHHHHHHHHCCCCHCTTT
T ss_pred HHHhhccCcchhhhccCc
Confidence 666777777777666655
No 281
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=20.35 E-value=1.8e+02 Score=27.23 Aligned_cols=53 Identities=9% Similarity=0.090 Sum_probs=34.4
Q ss_pred EccCCCCCCcch-hHHHHHHHHHHhhCCCceEEEEcCCC----CCChhHHHHHHHHhcc
Q psy15557 58 FHPYCNAGGGGE-RVLWTAVLALHQKYPDYKIYIYTGDV----DASPSEIIKRAHQRFN 111 (207)
Q Consensus 58 FHPycnaGGGGE-RVLW~Ai~alq~~~~~~~~vIYTgd~----~~~~~~il~~a~~rF~ 111 (207)
.+..==.| |++ .=|=.||+.+.++|+---+.|||+.. +-|-+.+.++++++.+
T Consensus 58 l~e~Div~-G~~~~~L~~aI~~i~~~~~P~~I~V~tTC~se~IGDDi~~v~~~~~~~~~ 115 (407)
T TIGR01279 58 LEESDLSS-AAPAEELDRVVEQIKRDRNPSVIFLLSSCTPEVIKMDLEGLAERLSTNFG 115 (407)
T ss_pred cCchhhhc-ccchHHHHHHHHHHHhhcCCCEEEEECCchHHHHHhhHHHHHHHHHHhhC
Confidence 34333343 443 36679999999987555788887763 2366777778777643
No 282
>PRK11914 diacylglycerol kinase; Reviewed
Probab=20.34 E-value=2.5e+02 Score=24.71 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=29.1
Q ss_pred cEEEEEccCCCCCCcchhHHHH-HHHHHHhhCCCceEEEEcCCCCCChhHHHHHHH
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWT-AVLALHQKYPDYKIYIYTGDVDASPSEIIKRAH 107 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~-Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~ 107 (207)
+..-++.|.++.|.+ +|. |. .++.++++ +..+.++.+...-+.+++.+++.
T Consensus 10 ~~~iI~NP~sG~g~~-~~~-~~~~~~~l~~~--g~~~~~~~t~~~~~~~~~a~~~~ 61 (306)
T PRK11914 10 KVTVLTNPLSGHGAA-PHA-AERAIARLHHR--GVDVVEIVGTDAHDARHLVAAAL 61 (306)
T ss_pred eEEEEECCCCCCCcH-HHH-HHHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHHHH
Confidence 466789998766543 333 54 44555444 55666555543445666666654
No 283
>PRK13529 malate dehydrogenase; Provisional
Probab=20.30 E-value=4.9e+02 Score=26.46 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=31.7
Q ss_pred HHHHhcCCCCEEEECCC--ccchHHHHHHhCC---CeeEEeeeCcc
Q psy15557 152 VEALLSFQPDIYIDTMG--YAFTYPLFSYIGG---SKVACYIHYPT 192 (207)
Q Consensus 152 ~EAl~~~~PDVfIDTmG--yaFtyPl~k~l~g---~~V~~YvHYPt 192 (207)
.|++.+..|||+|=+.| =+||=.++|-++. -+|++=.-=||
T Consensus 375 ~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 420 (563)
T PRK13529 375 LEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNPT 420 (563)
T ss_pred HHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCcC
Confidence 57888889999999876 4799999999886 56765444444
No 284
>PLN03220 uncharacterized protein; Provisional
Probab=20.07 E-value=1.4e+02 Score=24.02 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCC----------------CChhHHHHHHHHhccee
Q psy15557 83 YPDYKIYIYTGDVD----------------ASPSEIIKRAHQRFNIV 113 (207)
Q Consensus 83 ~~~~~~vIYTgd~~----------------~~~~~il~~a~~rF~i~ 113 (207)
-|+-.++||+||.+ -.-.++|++|++-||.+
T Consensus 35 VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~ 81 (105)
T PLN03220 35 VPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFN 81 (105)
T ss_pred CCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCC
Confidence 47788999998731 12368999999999864
No 285
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=20.05 E-value=4.6e+02 Score=20.93 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=18.9
Q ss_pred CCchhhhhHHHHHHHHHHHHHhcCCCC
Q psy15557 135 YPYFTLLGQSIGSMILGVEALLSFQPD 161 (207)
Q Consensus 135 yp~fTLLgQslGSi~L~~EAl~~~~PD 161 (207)
-..+.++|.|+|+. +++++..+.+|+
T Consensus 65 ~~~~~lvG~S~Gg~-va~~~a~~~~~~ 90 (242)
T PRK11126 65 ILPYWLVGYSLGGR-IAMYYACQGLAG 90 (242)
T ss_pred CCCeEEEEECHHHH-HHHHHHHhCCcc
Confidence 34688999999986 666665566555
No 286
>PRK05256 condesin subunit E; Provisional
Probab=20.01 E-value=1e+02 Score=28.06 Aligned_cols=61 Identities=21% Similarity=0.318 Sum_probs=49.8
Q ss_pred CChhHHHHHHHHhcceeecCCceEEEEcCc--cceeeCCCCCchh-hhhHHHHHHHHHHHHHhc
Q psy15557 97 ASPSEIIKRAHQRFNIVLPEQAINFVYLYR--RKFVEASLYPYFT-LLGQSIGSMILGVEALLS 157 (207)
Q Consensus 97 ~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~--r~lve~~~yp~fT-LLgQslGSi~L~~EAl~~ 157 (207)
.+-++.|+.--+|+|.+|-..|=.|-|||. +.+|.-+..--.+ +.|+.|-.++|.-|.|.+
T Consensus 48 ~d~q~~L~~FY~ry~~eLi~aPEgffYLrP~~ttlI~rsvLSeldMlvGkvLc~LyLsperLa~ 111 (238)
T PRK05256 48 MDFQEELEEFYRRYNVELIRAPEGFFYLRPRSTTLIPRSVLSELDMLVGKILCYLYLSPERLAH 111 (238)
T ss_pred HHHHHHHHHHHHHhceeEEEcCCceEEecccccccccHHHhhHHHHHHHHHHHHHhcCHHHHhc
Confidence 366888999999999999877789999988 4577777766677 569999999999888766
Done!