Query psy15557
Match_columns 207
No_of_seqs 127 out of 244
Neff 3.8
Searched_HMMs 29240
Date Sat Aug 17 00:20:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15557.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15557hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jjm_A Glycosyl transferase, g 96.4 0.03 1E-06 47.1 11.0 114 53-190 17-134 (394)
2 3fro_A GLGA glycogen synthase; 96.2 0.018 6.1E-07 48.2 8.3 137 53-192 3-156 (439)
3 1f0k_A MURG, UDP-N-acetylgluco 96.0 0.044 1.5E-06 45.3 9.5 119 54-189 8-127 (364)
4 3okp_A GDP-mannose-dependent a 95.2 0.096 3.3E-06 43.2 8.8 112 53-190 5-119 (394)
5 2iuy_A Avigt4, glycosyltransfe 94.6 0.27 9.2E-06 40.4 10.1 88 64-193 28-115 (342)
6 2gek_A Phosphatidylinositol ma 94.5 0.23 7.9E-06 41.2 9.4 121 52-193 20-142 (406)
7 2r60_A Glycosyl transferase, g 93.9 0.66 2.2E-05 40.5 11.6 127 53-191 8-153 (499)
8 2x6q_A Trehalose-synthase TRET 93.8 0.22 7.6E-06 42.1 8.0 39 53-94 41-79 (416)
9 3c48_A Predicted glycosyltrans 93.3 0.46 1.6E-05 40.2 9.2 124 53-192 21-156 (438)
10 2vsy_A XCC0866; transferase, g 92.4 2.8 9.5E-05 37.1 13.3 112 51-193 204-318 (568)
11 3oy2_A Glycosyltransferase B73 91.7 0.65 2.2E-05 39.1 8.0 38 54-94 2-39 (413)
12 2iw1_A Lipopolysaccharide core 89.5 2.3 7.8E-05 34.7 9.2 38 55-94 3-40 (374)
13 2gt1_A Lipopolysaccharide hept 87.1 1.8 6.1E-05 36.0 7.2 102 67-188 11-115 (326)
14 3s2u_A UDP-N-acetylglucosamine 86.9 5.6 0.00019 34.1 10.5 50 137-186 70-120 (365)
15 3dzc_A UDP-N-acetylglucosamine 86.9 5 0.00017 35.0 10.3 94 75-186 44-140 (396)
16 2qzs_A Glycogen synthase; glyc 85.6 10 0.00034 32.6 11.4 38 55-94 3-43 (485)
17 1psw_A ADP-heptose LPS heptosy 83.3 7.5 0.00026 32.1 9.3 91 68-184 12-104 (348)
18 1rzu_A Glycogen synthase 1; gl 83.0 5.7 0.0002 34.2 8.7 38 55-94 3-43 (485)
19 3otg_A CALG1; calicheamicin, T 78.2 17 0.0006 30.2 9.9 40 152-192 123-162 (412)
20 3beo_A UDP-N-acetylglucosamine 75.7 15 0.0005 30.1 8.6 43 147-189 83-127 (375)
21 3ot5_A UDP-N-acetylglucosamine 75.5 14 0.00049 32.3 9.0 95 74-186 45-143 (403)
22 3rsc_A CALG2; TDP, enediyne, s 75.3 19 0.00063 30.3 9.3 43 152-194 111-153 (415)
23 3ia7_A CALG4; glycosysltransfe 74.6 34 0.0012 28.1 12.3 44 152-195 95-138 (402)
24 4hwg_A UDP-N-acetylglucosamine 74.6 12 0.00042 32.8 8.3 101 75-196 28-131 (385)
25 2iyf_A OLED, oleandomycin glyc 70.7 47 0.0016 28.0 11.3 119 54-192 9-136 (430)
26 2x0d_A WSAF; GT4 family, trans 68.7 4.1 0.00014 35.9 3.9 43 52-96 46-90 (413)
27 2vsy_A XCC0866; transferase, g 66.9 30 0.001 30.4 9.1 91 70-187 391-482 (568)
28 1vgv_A UDP-N-acetylglucosamine 65.2 41 0.0014 27.6 9.1 41 149-189 76-118 (384)
29 4fzr_A SSFS6; structural genom 61.7 50 0.0017 27.6 9.2 42 153-195 117-158 (398)
30 3tov_A Glycosyl transferase fa 59.1 21 0.00073 30.5 6.6 99 54-182 10-111 (349)
31 3tsa_A SPNG, NDP-rhamnosyltran 58.8 76 0.0026 26.2 10.3 38 153-191 108-145 (391)
32 2p6p_A Glycosyl transferase; X 57.5 81 0.0028 26.1 11.4 39 153-192 101-139 (384)
33 2jfn_A Glutamate racemase; cel 54.2 23 0.00079 30.0 5.9 48 53-109 22-75 (285)
34 1v4v_A UDP-N-acetylglucosamine 54.0 90 0.0031 25.5 10.5 41 152-193 84-126 (376)
35 2l5o_A Putative thioredoxin; s 51.7 24 0.00082 25.1 4.9 56 53-114 31-88 (153)
36 3h4t_A Glycosyltransferase GTF 50.9 1.2E+02 0.0039 25.9 9.9 103 74-193 19-128 (404)
37 3erw_A Sporulation thiol-disul 49.1 31 0.0011 23.9 5.0 59 53-115 37-97 (145)
38 2y7p_A LYSR-type regulatory pr 48.5 46 0.0016 25.1 6.2 59 67-129 18-82 (218)
39 3fkf_A Thiol-disulfide oxidore 47.5 60 0.0021 22.5 6.4 55 53-112 36-91 (148)
40 2acv_A Triterpene UDP-glucosyl 46.4 93 0.0032 27.6 8.8 122 54-185 11-139 (463)
41 3kc2_A Uncharacterized protein 45.3 23 0.00078 31.2 4.6 42 75-118 37-78 (352)
42 3eoq_A Putative zinc protease; 44.8 31 0.0011 29.0 5.2 51 59-111 149-205 (406)
43 3cww_A Insulysin, insulin-degr 43.5 23 0.0008 33.9 4.6 52 58-111 183-247 (990)
44 1s3a_A NADH-ubiquinone oxidore 43.5 51 0.0017 24.1 5.6 32 61-92 26-60 (102)
45 3jv9_A OXYR, transcriptional r 43.0 62 0.0021 23.3 6.0 47 53-109 6-52 (219)
46 3u85_B Histone-lysine N-methyl 42.8 6.7 0.00023 22.4 0.5 10 61-70 12-21 (21)
47 1v4v_A UDP-N-acetylglucosamine 42.7 26 0.00089 28.8 4.3 102 53-168 200-303 (376)
48 3oti_A CALG3; calicheamicin, T 42.4 1.5E+02 0.0051 24.7 9.5 36 53-93 21-56 (398)
49 3ho7_A OXYR; beta-alpha-barrel 42.2 83 0.0028 23.0 6.7 57 67-127 21-83 (232)
50 3kcm_A Thioredoxin family prot 41.9 42 0.0014 23.8 4.9 58 53-114 31-88 (154)
51 2k6v_A Putative cytochrome C o 41.7 80 0.0028 22.7 6.5 56 53-112 38-99 (172)
52 3gl3_A Putative thiol:disulfid 41.7 31 0.0011 24.4 4.1 46 53-104 31-78 (152)
53 3aek_A Light-independent proto 41.2 41 0.0014 30.2 5.7 54 56-110 85-145 (437)
54 4a6d_A Hydroxyindole O-methylt 41.0 36 0.0012 29.2 5.1 43 75-124 193-235 (353)
55 3gjy_A Spermidine synthase; AP 39.8 41 0.0014 29.5 5.3 51 74-130 102-152 (317)
56 3hdi_A Processing protease; CA 38.5 60 0.002 27.3 6.0 50 59-111 150-205 (421)
57 2lrn_A Thiol:disulfide interch 38.5 65 0.0022 23.0 5.5 44 53-102 32-77 (152)
58 3u7q_A Nitrogenase molybdenum- 38.5 52 0.0018 30.3 6.0 46 67-112 126-176 (492)
59 3aek_B Light-independent proto 37.9 37 0.0013 31.5 4.9 47 61-107 62-112 (525)
60 2xci_A KDO-transferase, 3-deox 37.8 33 0.0011 29.3 4.4 41 67-108 207-247 (374)
61 3dzc_A UDP-N-acetylglucosamine 37.6 1.4E+02 0.0048 25.7 8.4 104 53-169 232-338 (396)
62 3geb_A EYES absent homolog 2; 37.5 27 0.00092 31.0 3.7 25 96-125 213-237 (274)
63 3oxn_A Putative transcriptiona 37.4 1E+02 0.0034 23.1 6.6 69 50-128 18-92 (241)
64 2ggt_A SCO1 protein homolog, m 37.2 1E+02 0.0035 21.9 6.4 56 53-112 26-88 (164)
65 3m9j_A Thioredoxin; oxidoreduc 37.0 84 0.0029 20.6 5.5 51 53-114 23-73 (105)
66 2rli_A SCO2 protein homolog, m 36.8 98 0.0033 22.3 6.3 55 53-111 29-90 (171)
67 1gh2_A Thioredoxin-like protei 36.5 87 0.003 20.9 5.6 51 53-114 24-74 (107)
68 2xdq_B Light-independent proto 36.5 42 0.0014 30.7 5.1 47 64-111 68-119 (511)
69 3ami_A Zinc peptidase; alpha/b 36.3 53 0.0018 27.9 5.4 52 58-111 155-212 (445)
70 1zuw_A Glutamate racemase 1; ( 35.6 63 0.0022 27.1 5.7 45 54-107 5-55 (272)
71 3pdi_A Nitrogenase MOFE cofact 35.6 37 0.0012 31.2 4.5 48 65-112 103-154 (483)
72 1zzo_A RV1677; thioredoxin fol 35.3 1E+02 0.0034 20.8 5.8 53 53-112 28-80 (136)
73 1yv9_A Hydrolase, haloacid deh 34.6 61 0.0021 25.3 5.1 40 74-115 28-67 (264)
74 3bs4_A Uncharacterized protein 34.0 47 0.0016 28.2 4.7 58 62-124 28-89 (260)
75 3gnj_A Thioredoxin domain prot 33.0 57 0.0019 21.7 4.1 52 52-114 24-76 (111)
76 2ql3_A Probable transcriptiona 32.7 63 0.0022 23.4 4.6 46 53-108 7-52 (209)
77 1lu4_A Soluble secreted antige 32.4 1E+02 0.0035 20.9 5.5 53 53-112 27-79 (136)
78 1uxy_A MURB, uridine diphospho 31.9 38 0.0013 29.9 3.8 36 85-123 286-328 (340)
79 3beo_A UDP-N-acetylglucosamine 31.2 1.7E+02 0.0057 23.6 7.4 101 53-166 207-309 (375)
80 3ejf_A Non-structural protein 31.2 1.1E+02 0.0036 24.9 6.1 41 50-94 121-164 (176)
81 2hxr_A HTH-type transcriptiona 31.1 1.1E+02 0.0039 22.6 5.9 68 51-128 30-103 (238)
82 2jwa_A Receptor tyrosine-prote 31.0 1.1E+02 0.0036 20.1 5.0 7 40-46 33-39 (44)
83 3tqd_A 3-deoxy-manno-octuloson 30.8 2.3E+02 0.0077 23.4 9.6 38 69-113 34-71 (256)
84 2fge_A Atprep2;, zinc metallop 30.7 35 0.0012 32.9 3.6 52 58-111 200-257 (995)
85 3eod_A Protein HNR; response r 30.5 1.3E+02 0.0043 20.4 5.7 22 73-94 67-88 (130)
86 1pp9_A Ubiquinol-cytochrome C 30.4 71 0.0024 27.2 5.2 51 59-111 161-217 (446)
87 2jfq_A Glutamate racemase; cel 30.1 80 0.0027 26.7 5.4 46 54-108 24-75 (286)
88 2ksn_A Ubiquitin domain-contai 29.5 22 0.00076 28.6 1.7 45 67-123 53-97 (137)
89 3kto_A Response regulator rece 29.1 1.3E+02 0.0044 20.7 5.6 22 73-94 68-89 (136)
90 1i6a_A OXYR, hydrogen peroxide 28.8 97 0.0033 22.8 5.2 66 53-128 7-78 (219)
91 3pdi_B Nitrogenase MOFE cofact 28.6 80 0.0027 28.7 5.5 45 67-111 75-123 (458)
92 1zjj_A Hypothetical protein PH 28.4 81 0.0028 25.0 4.9 40 73-115 23-62 (263)
93 1hr6_B Beta-MPP, mitochondrial 28.0 84 0.0029 26.5 5.2 51 59-111 155-211 (443)
94 3ijd_A Uncharacterized protein 27.7 1.5E+02 0.0052 26.1 6.9 59 51-113 14-91 (315)
95 3q71_A Poly [ADP-ribose] polym 27.5 1.1E+02 0.0037 25.6 5.7 60 51-113 148-218 (221)
96 2knc_B Integrin beta-3; transm 27.4 1.2E+02 0.0042 21.6 5.2 23 25-47 21-43 (79)
97 2fyi_A HTH-type transcriptiona 27.1 94 0.0032 23.1 4.9 47 52-108 15-61 (228)
98 1mio_B Nitrogenase molybdenum 27.0 83 0.0028 28.3 5.2 59 67-128 79-141 (458)
99 2dwu_A Glutamate racemase; iso 26.8 1.1E+02 0.0037 25.7 5.6 48 53-109 8-61 (276)
100 1mio_A Nitrogenase molybdenum 26.7 60 0.0021 30.3 4.4 45 67-111 117-165 (533)
101 3onm_A Transcriptional regulat 26.6 98 0.0034 23.2 4.9 47 52-108 28-74 (238)
102 3hdg_A Uncharacterized protein 26.6 1.5E+02 0.0051 20.1 5.5 21 74-94 68-88 (137)
103 3jte_A Response regulator rece 26.5 1.6E+02 0.0054 20.2 5.9 22 73-94 65-86 (143)
104 3die_A Thioredoxin, TRX; elect 26.5 72 0.0025 20.9 3.7 51 53-114 22-73 (106)
105 3u95_A Glycoside hydrolase, fa 26.4 77 0.0026 29.1 5.0 24 71-94 138-161 (477)
106 2vim_A Thioredoxin, TRX; thior 26.3 1.4E+02 0.0046 19.4 5.6 51 53-114 22-72 (104)
107 3eul_A Possible nitrate/nitrit 26.3 1.6E+02 0.0055 20.5 5.8 22 73-94 77-98 (152)
108 2i4a_A Thioredoxin; acidophIle 26.1 60 0.0021 21.3 3.2 52 53-114 23-74 (107)
109 3q3j_B RHO-related GTP-binding 25.7 53 0.0018 25.4 3.3 46 59-108 4-49 (214)
110 1q2l_A Protease III; hydrolase 25.6 1E+02 0.0035 29.2 5.8 52 58-111 169-230 (939)
111 3hv2_A Response regulator/HD d 25.6 1.8E+02 0.006 20.4 6.0 22 73-94 74-95 (153)
112 4e7p_A Response regulator; DNA 25.5 1.7E+02 0.0057 20.5 5.7 22 73-94 82-103 (150)
113 4aq4_A SN-glycerol-3-phosphate 25.5 2.1E+02 0.0073 23.4 7.1 53 51-110 4-57 (419)
114 3tx1_A UDP-N-acetylenolpyruvoy 25.5 47 0.0016 29.0 3.2 35 85-122 277-318 (322)
115 2ho4_A Haloacid dehalogenase-l 25.2 1E+02 0.0035 23.5 4.8 40 73-115 29-68 (259)
116 3uhf_A Glutamate racemase; str 24.7 1.5E+02 0.0053 25.2 6.3 48 53-109 25-78 (274)
117 4dad_A Putative pilus assembly 24.7 1.5E+02 0.0051 20.5 5.3 22 73-94 83-104 (146)
118 3hzh_A Chemotaxis response reg 24.4 1.7E+02 0.0057 20.8 5.7 22 73-94 99-120 (157)
119 4dgu_A Putative cell adhesion 24.4 24 0.00082 30.5 1.1 16 183-198 76-91 (247)
120 2ygw_A Malonyl-COA decarboxyla 24.4 35 0.0012 32.3 2.3 82 40-126 193-300 (460)
121 1gxs_B P-(S)-hydroxymandelonit 24.2 40 0.0014 26.2 2.3 22 74-97 57-78 (158)
122 3v2d_I 50S ribosomal protein L 24.2 1E+02 0.0035 24.3 4.8 46 75-120 64-115 (148)
123 2e0q_A Thioredoxin; electron t 23.9 1.5E+02 0.005 19.0 4.8 51 53-114 19-69 (104)
124 3d3y_A Uncharacterized protein 23.7 1.2E+02 0.0041 25.0 5.3 51 58-111 166-222 (425)
125 2wem_A Glutaredoxin-related pr 23.7 83 0.0028 23.2 3.9 26 63-94 3-28 (118)
126 2p5q_A Glutathione peroxidase 23.5 1.4E+02 0.0047 21.4 5.0 59 53-115 35-100 (170)
127 1ur4_A Galactanase; hydrolase, 23.2 2.4E+02 0.0082 25.4 7.5 85 71-172 182-269 (399)
128 2b5x_A YKUV protein, TRXY; thi 23.0 1.9E+02 0.0064 19.8 5.6 57 53-114 32-92 (148)
129 3cx5_A Cytochrome B-C1 complex 22.8 1.3E+02 0.0045 24.9 5.4 51 59-111 146-202 (431)
130 2vm1_A Thioredoxin, thioredoxi 22.8 1.6E+02 0.0054 19.6 5.0 51 53-114 31-81 (118)
131 3e0x_A Lipase-esterase related 22.8 2E+02 0.0068 20.7 5.8 24 137-161 85-108 (245)
132 1whs_B Serine carboxypeptidase 22.7 45 0.0016 25.7 2.3 22 74-97 55-76 (153)
133 1h7e_A 3-deoxy-manno-octuloson 22.6 1.5E+02 0.0053 23.0 5.5 36 68-108 26-61 (245)
134 3rqi_A Response regulator prot 22.6 2.1E+02 0.0071 21.1 6.0 22 73-94 67-88 (184)
135 3epr_A Hydrolase, haloacid deh 22.4 1.3E+02 0.0043 23.7 5.0 39 74-115 28-66 (264)
136 2qsx_A Putative transcriptiona 22.2 77 0.0026 23.8 3.5 39 51-95 19-57 (218)
137 2qxy_A Response regulator; reg 22.2 1.9E+02 0.0066 19.7 5.9 22 73-94 63-84 (142)
138 1faa_A Thioredoxin F; electron 22.1 1.9E+02 0.0064 19.7 5.3 52 53-114 40-91 (124)
139 3d22_A TRXH4, thioredoxin H-ty 22.1 1.6E+02 0.0056 20.5 5.1 52 53-115 49-100 (139)
140 1q55_A EP-cadherin, C-cadherin 21.9 19 0.00065 35.5 0.0 23 58-81 749-771 (880)
141 1thx_A Thioredoxin, thioredoxi 21.9 1.8E+02 0.0061 19.2 5.3 51 53-114 28-79 (115)
142 3f6c_A Positive transcription 21.9 1.3E+02 0.0043 20.4 4.4 21 74-94 63-83 (134)
143 3hcz_A Possible thiol-disulfid 21.8 1E+02 0.0035 21.3 3.9 53 53-112 34-88 (148)
144 4ab5_A Transcriptional regulat 21.8 1.2E+02 0.0041 21.9 4.4 28 68-95 19-46 (222)
145 4g68_A ABC transporter; transp 21.8 2.5E+02 0.0086 24.0 7.1 52 53-110 63-114 (456)
146 1ixc_A CBNR, LYSR-type regulat 21.6 1.6E+02 0.0054 22.7 5.3 48 51-108 91-138 (294)
147 2xdq_A Light-independent proto 21.5 1E+02 0.0034 27.5 4.7 45 66-112 80-129 (460)
148 4dnp_A DAD2; alpha/beta hydrol 21.4 78 0.0027 23.3 3.3 20 137-157 91-110 (269)
149 1fb6_A Thioredoxin M; electron 21.3 1.6E+02 0.0055 19.0 4.6 53 52-114 20-72 (105)
150 3i99_A UDP-N-acetylenolpyruvoy 21.3 76 0.0026 28.3 3.8 36 85-123 300-342 (357)
151 3hxs_A Thioredoxin, TRXP; elec 21.1 1.7E+02 0.0058 20.4 5.0 52 52-113 53-104 (141)
152 1dbw_A Transcriptional regulat 21.1 1.9E+02 0.0066 19.3 5.6 21 74-94 64-84 (126)
153 2dj0_A Thioredoxin-related tra 21.0 2.2E+02 0.0076 20.0 7.4 52 53-113 29-80 (137)
154 3kcn_A Adenylate cyclase homol 21.0 1.7E+02 0.0059 20.4 5.1 22 73-94 64-85 (151)
155 4euy_A Uncharacterized protein 20.8 1.1E+02 0.0037 20.4 3.8 50 53-113 21-70 (105)
156 3lua_A Response regulator rece 20.7 1.8E+02 0.0063 19.8 5.1 22 73-94 67-90 (140)
157 4gyw_A UDP-N-acetylglucosamine 20.4 5.1E+02 0.018 24.6 9.6 88 74-188 541-629 (723)
158 1ute_A Protein (II purple acid 20.2 2E+02 0.0067 22.6 5.7 41 52-94 179-221 (313)
159 2php_A Uncharacterized protein 20.1 3E+02 0.01 22.7 7.0 79 67-170 74-155 (192)
160 3qit_A CURM TE, polyketide syn 20.1 2.1E+02 0.0071 20.9 5.5 21 136-157 95-115 (286)
161 1srr_A SPO0F, sporulation resp 20.1 2E+02 0.0069 19.1 5.9 21 74-94 64-84 (124)
No 1
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=96.42 E-value=0.03 Score=47.07 Aligned_cols=114 Identities=16% Similarity=0.026 Sum_probs=65.1
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeC
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEA 132 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~ 132 (207)
+....+.|. .||.|++.+.-+++++++ ++.+.++|.+.+ .+. + ...+.+.+..+....
T Consensus 17 ~~~~~~~p~---~GG~~~~~~~la~~L~~~--G~~V~v~~~~~~---~~~-~---------~~~~~i~~~~~~~~~---- 74 (394)
T 2jjm_A 17 KIGITCYPS---VGGSGVVGTELGKQLAER--GHEIHFITSGLP---FRL-N---------KVYPNIYFHEVTVNQ---- 74 (394)
T ss_dssp EEEEECCC-----CHHHHHHHHHHHHHHHT--TCEEEEECSSCC-----------------CCCTTEEEECCCCC-----
T ss_pred eeehhcCCC---CCCHHHHHHHHHHHHHhC--CCEEEEEeCCCC---Ccc-c---------ccCCceEEEeccccc----
Confidence 355566664 569999999999999987 788888887632 110 0 111344444433221
Q ss_pred CCCCchhhhhHHHHHHHHHHHHHhcCCCCEEEECCCccchHH--HHHHhC--CCeeEEeeeC
Q psy15557 133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP--LFSYIG--GSKVACYIHY 190 (207)
Q Consensus 133 ~~yp~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyP--l~k~l~--g~~V~~YvHY 190 (207)
+|.+......+....-..+.+.+..|||.+-..+++..++ +.+.+. +.|++..+|=
T Consensus 75 --~~~~~~~~~~~~~~~~l~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 134 (394)
T 2jjm_A 75 --YSVFQYPPYDLALASKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHG 134 (394)
T ss_dssp -----CCSCCHHHHHHHHHHHHHHHHTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCH
T ss_pred --ccccccccccHHHHHHHHHHHHHcCCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEec
Confidence 2222111112222333455677789999998766655433 445454 5899999995
No 2
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=96.19 E-value=0.018 Score=48.20 Aligned_cols=137 Identities=13% Similarity=-0.014 Sum_probs=72.2
Q ss_pred cEEEEEccCCC--CCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcc----eee---cCCceEEEE
Q psy15557 53 KTVAFFHPYCN--AGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFN----IVL---PEQAINFVY 123 (207)
Q Consensus 53 ~~VgFFHPycn--aGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~----i~L---~~~~i~FV~ 123 (207)
..|.+..++.. ..||.|++.+.-.++++++ ++.+.+.|.+.+...++..+..+. |+ .++ ..+.+++..
T Consensus 3 MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gv~v~~ 79 (439)
T 3fro_A 3 MKVLLLGFEFLPVKVGGLAEALTAISEALASL--GHEVLVFTPSHGRFQGEEIGKIRV-FGEEVQVKVSYEERGNLRIYR 79 (439)
T ss_dssp CEEEEECSCCTTSCSSSHHHHHHHHHHHHHHT--TCEEEEEEECTTCSCCEEEEEEEE-TTEEEEEEEEEEEETTEEEEE
T ss_pred eEEEEEecccCCcccCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCchhhhhccccc-cCcccceeeeeccCCCceEEE
Confidence 45777776643 3679999999999999998 788888886533221111000000 11 000 225666666
Q ss_pred cCccceeeCCCCCch-hh-hhHHHHHHHHHHHHHh-----cCCCCEEEECCCccchHH-HHHHhCCCeeEEeeeCcc
Q psy15557 124 LYRRKFVEASLYPYF-TL-LGQSIGSMILGVEALL-----SFQPDIYIDTMGYAFTYP-LFSYIGGSKVACYIHYPT 192 (207)
Q Consensus 124 Lr~r~lve~~~yp~f-TL-LgQslGSi~L~~EAl~-----~~~PDVfIDTmGyaFtyP-l~k~l~g~~V~~YvHYPt 192 (207)
+....+-....|+.+ .- ......-..-..+.+. +..|||..-....+...+ +++...|+|++..+|=+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~ 156 (439)
T 3fro_A 80 IGGGLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKKYFKIPAVFTIHRLN 156 (439)
T ss_dssp EESGGGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGGHHHHHHHHHHHCCCEEEEESCCC
T ss_pred ecchhccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchhhhhhHHHHhhccCCCEEEEecccc
Confidence 665332233344411 11 1111101111122222 458999887654443333 233456999999999654
No 3
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=95.98 E-value=0.044 Score=45.33 Aligned_cols=119 Identities=9% Similarity=0.086 Sum_probs=64.8
Q ss_pred EEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCC
Q psy15557 54 TVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEAS 133 (207)
Q Consensus 54 ~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~ 133 (207)
.|.+.. +..||.|+....-+++++++ ++.+.++|.+.. ..+ +.. +. ..+++..+....+-...
T Consensus 8 kIl~~~---~~~gG~~~~~~~la~~L~~~--G~~V~v~~~~~~-~~~---~~~-~~-------~g~~~~~~~~~~~~~~~ 70 (364)
T 1f0k_A 8 RLMVMA---GGTGGHVFPGLAVAHHLMAQ--GWQVRWLGTADR-MEA---DLV-PK-------HGIEIDFIRISGLRGKG 70 (364)
T ss_dssp EEEEEC---CSSHHHHHHHHHHHHHHHTT--TCEEEEEECTTS-THH---HHG-GG-------GTCEEEECCCCCCTTCC
T ss_pred EEEEEe---CCCccchhHHHHHHHHHHHc--CCEEEEEecCCc-chh---hhc-cc-------cCCceEEecCCccCcCc
Confidence 477774 33458899998999999886 788888887632 111 111 11 12333333332210000
Q ss_pred CCCchhhhhHHHHHHHHHHHHHhcCCCCEEEECCCccc-hHHHHHHhCCCeeEEeee
Q psy15557 134 LYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAF-TYPLFSYIGGSKVACYIH 189 (207)
Q Consensus 134 ~yp~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaF-tyPl~k~l~g~~V~~YvH 189 (207)
.+..+.-....+.++.-..+.+.+..||+.+-+.+++. ...++....|.|++...|
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~ 127 (364)
T 1f0k_A 71 IKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQ 127 (364)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHCCSEEEECSSTTHHHHHHHHHHTTCCEEEEEC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcCchHHHHHHHHcCCCEEEEec
Confidence 01111112223333444456677789999998876532 222334456899887777
No 4
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=95.19 E-value=0.096 Score=43.21 Aligned_cols=112 Identities=12% Similarity=0.013 Sum_probs=65.0
Q ss_pred cEEEEEcc-CCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceee
Q psy15557 53 KTVAFFHP-YCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVE 131 (207)
Q Consensus 53 ~~VgFFHP-ycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve 131 (207)
+.|.++.+ +....||.|+++..-++++ .++.+.++|.+. +.. -.+...+ ...++++.+..+..
T Consensus 5 mkIl~v~~~~~p~~gG~~~~~~~l~~~L----~g~~v~v~~~~~--~~~-~~~~~~~-------~~~~~~~~~~~~~~-- 68 (394)
T 3okp_A 5 RKTLVVTNDFPPRIGGIQSYLRDFIATQ----DPESIVVFASTQ--NAE-EAHAYDK-------TLDYEVIRWPRSVM-- 68 (394)
T ss_dssp CCEEEEESCCTTSCSHHHHHHHHHHTTS----CGGGEEEEEECS--SHH-HHHHHHT-------TCSSEEEEESSSSC--
T ss_pred ceEEEEeCccCCccchHHHHHHHHHHHh----cCCeEEEEECCC--Ccc-chhhhcc-------ccceEEEEcccccc--
Confidence 34777776 3445789999999988888 257788887762 222 1122222 23455566555332
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHhcCCCCEEEECCCccc--hHHHHHHhCCCeeEEeeeC
Q psy15557 132 ASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAF--TYPLFSYIGGSKVACYIHY 190 (207)
Q Consensus 132 ~~~yp~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaF--tyPl~k~l~g~~V~~YvHY 190 (207)
++.. ....-..+.+.+..||+.+-....+. ...++|..+..+++..+|=
T Consensus 69 ---~~~~-------~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 119 (394)
T 3okp_A 69 ---LPTP-------TTAHAMAEIIREREIDNVWFGAAAPLALMAGTAKQAGASKVIASTHG 119 (394)
T ss_dssp ---CSCH-------HHHHHHHHHHHHTTCSEEEESSCTTGGGGHHHHHHTTCSEEEEECCS
T ss_pred ---ccch-------hhHHHHHHHHHhcCCCEEEECCcchHHHHHHHHHhcCCCcEEEEecc
Confidence 2222 22333445677889999885443333 3334454444469999994
No 5
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=94.65 E-value=0.27 Score=40.40 Aligned_cols=88 Identities=14% Similarity=-0.003 Sum_probs=55.3
Q ss_pred CCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhH
Q psy15557 64 AGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQ 143 (207)
Q Consensus 64 aGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQ 143 (207)
.+||.|++++.-+++++++ ++.+.+++.+.+.... +.++++.. +...
T Consensus 28 ~~gG~~~~~~~l~~~L~~~--G~~v~v~~~~~~~~~~----------------~~~~~~~~-----------~~~~---- 74 (342)
T 2iuy_A 28 GYGGIQWVVANLMDGLLEL--GHEVFLLGAPGSPAGR----------------PGLTVVPA-----------GEPE---- 74 (342)
T ss_dssp SSCHHHHHHHHHHHHHHHT--TCEEEEESCTTSCCCS----------------TTEEECSC-----------CSHH----
T ss_pred cCChHHHHHHHHHHHHHHc--CCeEEEEecCCCCCCC----------------CcceeccC-----------CcHH----
Confidence 4689999999999999987 7889998876322210 12222111 1110
Q ss_pred HHHHHHHHHHHHhcCCCCEEEECCCccchHHHHHHhCCCeeEEeeeCccc
Q psy15557 144 SIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTI 193 (207)
Q Consensus 144 slGSi~L~~EAl~~~~PDVfIDTmGyaFtyPl~k~l~g~~V~~YvHYPtI 193 (207)
...+.+.+..||+.+-....+..+ . ....|.| +..+|=...
T Consensus 75 ------~l~~~l~~~~~Dvi~~~~~~~~~~-~-~~~~~~p-v~~~h~~~~ 115 (342)
T 2iuy_A 75 ------EIERWLRTADVDVVHDHSGGVIGP-A-GLPPGTA-FISSHHFTT 115 (342)
T ss_dssp ------HHHHHHHHCCCSEEEECSSSSSCS-T-TCCTTCE-EEEEECSSS
T ss_pred ------HHHHHHHhcCCCEEEECCchhhHH-H-HhhcCCC-EEEecCCCC
Confidence 234556778999998877554322 2 2345888 888887643
No 6
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=94.48 E-value=0.23 Score=41.21 Aligned_cols=121 Identities=11% Similarity=0.013 Sum_probs=65.2
Q ss_pred ccEEEEEccCCC-CCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCcccee
Q psy15557 52 LKTVAFFHPYCN-AGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFV 130 (207)
Q Consensus 52 ~~~VgFFHPycn-aGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lv 130 (207)
.+.|.|..|+.. ..||+|+.++.-+++++++ ++.+.+++.+.... ++ ..+. ..+ .++ +.+......
T Consensus 20 ~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~--~~-----~~~~-~~~-~~~--~~~~~~~~~ 86 (406)
T 2gek_A 20 HMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDA--GHEVSVLAPASPHV--KL-----PDYV-VSG-GKA--VPIPYNGSV 86 (406)
T ss_dssp -CEEEEECSSCTTSCCHHHHHHHHHHHHHHHT--TCEEEEEESCCTTS--CC-----CTTE-EEC-CCC--C--------
T ss_pred cceEEEEeccCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEecCCccc--cC-----Cccc-ccC-CcE--EeccccCCc
Confidence 357999999864 4589999999999999987 78888888763211 00 0110 011 111 111111100
Q ss_pred eCCCCCchhhhhHHHHHHHHHHHHHhcCCCCEEEECCCccchHH-HHHHhCCCeeEEeeeCccc
Q psy15557 131 EASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP-LFSYIGGSKVACYIHYPTI 193 (207)
Q Consensus 131 e~~~yp~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyP-l~k~l~g~~V~~YvHYPtI 193 (207)
..-.++. . ......+.+.+..||+.+-....+..+. .++...+.|++.++|-...
T Consensus 87 ~~~~~~~-----~---~~~~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~ 142 (406)
T 2gek_A 87 ARLRFGP-----A---THRKVKKWIAEGDFDVLHIHEPNAPSLSMLALQAAEGPIVATFHTSTT 142 (406)
T ss_dssp ----CCH-----H---HHHHHHHHHHHHCCSEEEEECCCSSSHHHHHHHHEESSEEEEECCCCC
T ss_pred ccccccH-----H---HHHHHHHHHHhcCCCEEEECCccchHHHHHHHHhcCCCEEEEEcCcch
Confidence 0001111 1 1122234466678999886665554432 2233458999999997543
No 7
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=93.94 E-value=0.66 Score=40.52 Aligned_cols=127 Identities=17% Similarity=0.073 Sum_probs=67.2
Q ss_pred cEEEEEccCC------------CCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcce---ee-cC
Q psy15557 53 KTVAFFHPYC------------NAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNI---VL-PE 116 (207)
Q Consensus 53 ~~VgFFHPyc------------naGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i---~L-~~ 116 (207)
..|.+..++- ...||.|+++..-++++.++ ++.+.|+|.+.+.+. . ..|.- ++ ..
T Consensus 8 MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~--G~~V~v~~~~~~~~~--~-----~~~~~~~~~~~~~ 78 (499)
T 2r60_A 8 KHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEM--GVQVDIITRRIKDEN--W-----PEFSGEIDYYQET 78 (499)
T ss_dssp CEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHT--TCEEEEEEECCCBTT--B-----GGGCCSEEECTTC
T ss_pred ceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhc--CCeEEEEeCCCCccc--c-----cchhhhHHhccCC
Confidence 4588887742 23579999999999999987 788888876532111 0 11111 12 02
Q ss_pred CceEEEEcCccceeeCCCCCchhhhhHHHHHHHHHHHHHhc--CCCCEEEECCCccchHH-HHHHhCCCeeEEeeeCc
Q psy15557 117 QAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLS--FQPDIYIDTMGYAFTYP-LFSYIGGSKVACYIHYP 191 (207)
Q Consensus 117 ~~i~FV~Lr~r~lve~~~yp~fTLLgQslGSi~L~~EAl~~--~~PDVfIDTmGyaFtyP-l~k~l~g~~V~~YvHYP 191 (207)
+.++++.+..... ...+...+..+......-..+.+.+ ..|||..-....+..+. +++...|+|++..+|-.
T Consensus 79 ~gv~v~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Divh~~~~~~~~~~~~~~~~~~~p~v~~~H~~ 153 (499)
T 2r60_A 79 NKVRIVRIPFGGD---KFLPKEELWPYLHEYVNKIINFYREEGKFPQVVTTHYGDGGLAGVLLKNIKGLPFTFTGHSL 153 (499)
T ss_dssp SSEEEEEECCSCS---SCCCGGGCGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHHHCCCEEEECSSC
T ss_pred CCeEEEEecCCCc---CCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHhcCCcEEEEccCc
Confidence 4566666543210 1112222222211111112334555 58999876543221111 12334589999999964
No 8
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=93.79 E-value=0.22 Score=42.09 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=31.5
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
+.|.+..++. .+||.|+++..-+++++++ ++.+.+++.+
T Consensus 41 mkIl~v~~~~-~~GG~~~~~~~l~~~L~~~--G~~v~v~~~~ 79 (416)
T 2x6q_A 41 RSFVHVNSTS-FGGGVAEILHSLVPLLRSI--GIEARWFVIE 79 (416)
T ss_dssp CEEEEEESCS-SSSTHHHHHHHHHHHHHHT--TCEEEEEECC
T ss_pred cEEEEEeCCC-CCCCHHHHHHHHHHHHHhC--CCeEEEEEcc
Confidence 5699999885 5679999999999999987 6777766654
No 9
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=93.26 E-value=0.46 Score=40.17 Aligned_cols=124 Identities=11% Similarity=0.053 Sum_probs=62.2
Q ss_pred cEEEEEccCCC--------CCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEc
Q psy15557 53 KTVAFFHPYCN--------AGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYL 124 (207)
Q Consensus 53 ~~VgFFHPycn--------aGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~L 124 (207)
+.|.+..++.. ..||.|+.++.-+++++++ ++.+.++|.+.+.... . ..++. +.++++++
T Consensus 21 mkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~--G~~V~v~~~~~~~~~~-------~--~~~~~-~~v~v~~~ 88 (438)
T 3c48_A 21 MRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQ--GIEVDIYTRATRPSQG-------E--IVRVA-ENLRVINI 88 (438)
T ss_dssp CEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHT--TCEEEEEEECCCGGGC-------S--EEEEE-TTEEEEEE
T ss_pred heeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhc--CCEEEEEecCCCCCCc-------c--ccccc-CCeEEEEe
Confidence 56887775432 4578999999999999987 6788888765221100 0 01233 55666666
Q ss_pred CccceeeCCCCCchhhhhHHHHHHHH-HHHH-HhcC-CCCEEEECCCccchHH-HHHHhCCCeeEEeeeCcc
Q psy15557 125 YRRKFVEASLYPYFTLLGQSIGSMIL-GVEA-LLSF-QPDIYIDTMGYAFTYP-LFSYIGGSKVACYIHYPT 192 (207)
Q Consensus 125 r~r~lve~~~yp~fTLLgQslGSi~L-~~EA-l~~~-~PDVfIDTmGyaFtyP-l~k~l~g~~V~~YvHYPt 192 (207)
..... ...+.-.+... +..... ..+. +.+. .||+.+-....+..+. +++...|.|++..+|-+.
T Consensus 89 ~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~ 156 (438)
T 3c48_A 89 AAGPY---EGLSKEELPTQ-LAAFTGGMLSFTRREKVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLA 156 (438)
T ss_dssp CCSCS---SSCCGGGGGGG-HHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred cCCCc---cccchhHHHHH-HHHHHHHHHHHHHhccCCCCEEEeCCccHHHHHHHHHHHcCCCEEEEecCCc
Confidence 54221 11111111111 111111 1122 3333 3999875542221111 123345899999999763
No 10
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=92.40 E-value=2.8 Score=37.08 Aligned_cols=112 Identities=16% Similarity=0.182 Sum_probs=64.0
Q ss_pred CccEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCcccee
Q psy15557 51 VLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFV 130 (207)
Q Consensus 51 ~~~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lv 130 (207)
++..|+++-+..+.| |.|+++..-++.|+....++.+++|+.+.+ +.++..++.++.. .+..+..
T Consensus 204 ~~~rI~~~~~~~~~~-g~~~~~~~l~~~L~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~---------~~~~~~~---- 268 (568)
T 2vsy_A 204 GPLRVGFVSNGFGAH-PTGLLTVALFEALQRRQPDLQMHLFATSGD-DGSTLRTRLAQAS---------TLHDVTA---- 268 (568)
T ss_dssp SCEEEEEEESCSSSS-HHHHHHHHHHHHHHHHCTTEEEEEEESSCC-CSCHHHHHHHHTS---------EEEECTT----
T ss_pred CCeEEEEECcccccC-hHHHHHHHHHhhccCCcccEEEEEEECCCC-CccHHHHHHHhcC---------eEEECCC----
Confidence 346799999988755 789999999998522224789999986422 1233344443321 2222211
Q ss_pred eCCCCCchhhhhHHHHHHHHHHHHHhcCCCCEEEECCCccch--HHHHHHhCCCee-EEeeeCccc
Q psy15557 131 EASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFT--YPLFSYIGGSKV-ACYIHYPTI 193 (207)
Q Consensus 131 e~~~yp~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaFt--yPl~k~l~g~~V-~~YvHYPtI 193 (207)
+ + ..-..+.+.+..|||.++.+|+.+. ++++. ...+++ .++.+||..
T Consensus 269 ----~---~--------~~~l~~~i~~~~~Div~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 318 (568)
T 2vsy_A 269 ----L---G--------HLATAKHIRHHGIDLLFDLRGWGGGGRPEVFA-LRPAPVQVNWLAYPGT 318 (568)
T ss_dssp ----C---C--------HHHHHHHHHHTTCSEEEECSSCTTCSSCHHHH-TCCSSEEEEESSSSSC
T ss_pred ----C---C--------HHHHHHHHHhCCCCEEEECCCCCCcchHHHHh-cCCCceeEeeecCCcc
Confidence 1 0 1112344677899999998887643 23321 112333 556557753
No 11
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=91.69 E-value=0.65 Score=39.06 Aligned_cols=38 Identities=11% Similarity=0.162 Sum_probs=30.7
Q ss_pred EEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 54 TVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 54 ~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
.|+|++|+...+||.||+...-.++|+++ +.+.++|.+
T Consensus 2 kI~~v~~~~p~~gG~~~~~~~l~~~L~~~---~~V~v~~~~ 39 (413)
T 3oy2_A 2 KLIIVGAHSSVPSGYGRVMRAIVPRISKA---HEVIVFGIH 39 (413)
T ss_dssp EEEEEEECTTCCSHHHHHHHHHHHHHTTT---SEEEEEEES
T ss_pred eEEEecCCCCCCCCHHHHHHHHHHHHHhc---CCeEEEeec
Confidence 38889998888999999999999999987 555555543
No 12
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=89.49 E-value=2.3 Score=34.73 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=30.0
Q ss_pred EEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 55 VAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 55 VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
|.+..++....||+|+++..-+++++++ ++.+.++|.+
T Consensus 3 Il~i~~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~ 40 (374)
T 2iw1_A 3 VAFCLYKYFPFGGLQRDFMRIASTVAAR--GHHVRVYTQS 40 (374)
T ss_dssp EEEECSEECTTCHHHHHHHHHHHHHHHT--TCCEEEEESE
T ss_pred EEEEEeecCCCcchhhHHHHHHHHHHhC--CCeEEEEecC
Confidence 6666665444689999999999999997 6778888765
No 13
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=87.06 E-value=1.8 Score=36.02 Aligned_cols=102 Identities=17% Similarity=0.096 Sum_probs=60.6
Q ss_pred cchh-HHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCce-EEEEcCccceeeCCCCCchhhhhHH
Q psy15557 67 GGER-VLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAI-NFVYLYRRKFVEASLYPYFTLLGQS 144 (207)
Q Consensus 67 GGER-VLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i-~FV~Lr~r~lve~~~yp~fTLLgQs 144 (207)
=|.= ..--++++++++||+.++.+-+++ .-+++++.- ..| +++...++.|-.. .+ ..+.
T Consensus 11 iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~---~~~~l~~~~----------p~vd~vi~~~~~~~~~~-~~-----~~~~ 71 (326)
T 2gt1_A 11 MGDVLHTLPALTDAQQAIPGIKFDWVVEE---GFAQIPSWH----------AAVERVIPVAIRRWRKA-WF-----SAPI 71 (326)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCEEEEEEEG---GGTHHHHTS----------TTEEEEEEECHHHHHTT-TT-----SHHH
T ss_pred cchHHhHHHHHHHHHHhCCCCEEEEEEeh---hhhHHHhcC----------CCCCEEEEccHHHhhhc-cc-----hHHH
Confidence 3454 456789999999999999999876 224444321 123 4555554443221 11 1334
Q ss_pred HHHHHHHHHHHhcCCCCEEEECCCccchHH-HHHHhCCCeeEEee
Q psy15557 145 IGSMILGVEALLSFQPDIYIDTMGYAFTYP-LFSYIGGSKVACYI 188 (207)
Q Consensus 145 lGSi~L~~EAl~~~~PDVfIDTmGyaFtyP-l~k~l~g~~V~~Yv 188 (207)
...+.--.+.+.+..+|+.||.+|. +-.- ++.++.|.+.+.|.
T Consensus 72 ~~~~~~~~~~lr~~~~D~vidl~~~-~~s~~~~~~l~~~~~ig~~ 115 (326)
T 2gt1_A 72 KAERKAFREALQAKNYDAVIDAQGL-VKSAALVTRLAHGVKHGMD 115 (326)
T ss_dssp HHHHHHHHHHHHHSBCSEEEECSCC-HHHHHHTGGGSBSCEEEEC
T ss_pred HHHHHHHHHHHhccCCCEEEECCcc-HHHHHHHHHHcCCcEEccC
Confidence 4444444567888899999999983 4333 44455664444553
No 14
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=86.90 E-value=5.6 Score=34.12 Aligned_cols=50 Identities=12% Similarity=0.150 Sum_probs=35.6
Q ss_pred chhhhhHHHHHHHHHHHHHhcCCCCEEEECCCccchHH-HHHHhCCCeeEE
Q psy15557 137 YFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP-LFSYIGGSKVAC 186 (207)
Q Consensus 137 ~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyP-l~k~l~g~~V~~ 186 (207)
.+..+.+.+.++.-+.+.+.+..||+.|-+.||+-..+ ++..+.|.|++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~l~~~~PDvVi~~g~~~s~p~~laA~~~~iP~vi 120 (365)
T 3s2u_A 70 LVKAPLELLKSLFQALRVIRQLRPVCVLGLGGYVTGPGGLAARLNGVPLVI 120 (365)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHCCSEEEECSSSTHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHcCCCEEE
Confidence 34455677788888888999999999999988864333 334567888763
No 15
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=86.89 E-value=5 Score=35.01 Aligned_cols=94 Identities=22% Similarity=0.166 Sum_probs=53.9
Q ss_pred HHHHHHhhCCCceE-EEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhHHHHHHHHHHH
Q psy15557 75 AVLALHQKYPDYKI-YIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVE 153 (207)
Q Consensus 75 Ai~alq~~~~~~~~-vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslGSi~L~~E 153 (207)
-+++++++ |+... ++-||... +..+...+.|+++-+ ..|.--. . .-++..|....+.-..+
T Consensus 44 li~~l~~~-~~~~~~~~~tG~h~----~~~~~~~~~~~i~~~------~~l~~~~---~----~~~~~~~~~~~~~~l~~ 105 (396)
T 3dzc_A 44 LVQQLCQD-NRFVAKVCVTGQHR----EMLDQVLELFSITPD------FDLNIME---P----GQTLNGVTSKILLGMQQ 105 (396)
T ss_dssp HHHHHHHC-TTEEEEEEECCSSS----HHHHHHHHHTTCCCS------EECCCCC---T----TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCcEEEEEecccH----HHHHHHHHhcCCCCc------eeeecCC---C----CCCHHHHHHHHHHHHHH
Confidence 46677764 67766 57788632 244444467887433 2222100 1 11333443333434455
Q ss_pred HHhcCCCCEEEECCCccchHHH--HHHhCCCeeEE
Q psy15557 154 ALLSFQPDIYIDTMGYAFTYPL--FSYIGGSKVAC 186 (207)
Q Consensus 154 Al~~~~PDVfIDTmGyaFtyPl--~k~l~g~~V~~ 186 (207)
.+.+..||+.+-.-++..++|. +....|.||+-
T Consensus 106 ~l~~~kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h 140 (396)
T 3dzc_A 106 VLSSEQPDVVLVHGDTATTFAASLAAYYQQIPVGH 140 (396)
T ss_dssp HHHHHCCSEEEEETTSHHHHHHHHHHHTTTCCEEE
T ss_pred HHHhcCCCEEEEECCchhHHHHHHHHHHhCCCEEE
Confidence 6788899999987777777773 33356889763
No 16
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=85.63 E-value=10 Score=32.65 Aligned_cols=38 Identities=13% Similarity=-0.033 Sum_probs=28.8
Q ss_pred EEEEccCCC---CCCcchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 55 VAFFHPYCN---AGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 55 VgFFHPycn---aGGGGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
|.++.++.. ..||.|++.+.-.++|+++ ++.+.|.|.+
T Consensus 3 Il~v~~~~~P~~~~GG~~~~~~~la~~L~~~--G~~V~vi~~~ 43 (485)
T 2qzs_A 3 VLHVCSEMFPLLKTGGLADVIGALPAAQIAD--GVDARVLLPA 43 (485)
T ss_dssp EEEECSCBTTTBCSSHHHHHHHHHHHHHHHT--TCEEEEEEEC
T ss_pred EEEEeeeccccccCCcHHHHHHHHHHHHHHc--CCEEEEEecC
Confidence 555555432 3468999999999999987 7888888865
No 17
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=83.29 E-value=7.5 Score=32.13 Aligned_cols=91 Identities=14% Similarity=0.086 Sum_probs=51.9
Q ss_pred chh-HHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCce-EEEEcCccceeeCCCCCchhhhhHHH
Q psy15557 68 GER-VLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAI-NFVYLYRRKFVEASLYPYFTLLGQSI 145 (207)
Q Consensus 68 GER-VLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i-~FV~Lr~r~lve~~~yp~fTLLgQsl 145 (207)
|+- ..--+++++++++|+.++.+-++. .-.++++. . ..+ +++....++ .+ + .+
T Consensus 12 GD~i~~~p~l~~Lk~~~P~~~i~~l~~~---~~~~l~~~---------~-p~i~~v~~~~~~~------~~-~-----~~ 66 (348)
T 1psw_A 12 GDMMMSQSLYRTLQARYPQAIIDVMAPA---WCRPLLSR---------M-PEVNEAIPMPLGH------GA-L-----EI 66 (348)
T ss_dssp HHHHHHHHHHHHHHHHSTTCEEEEEECG---GGHHHHTT---------C-TTEEEEEEC-------------------CH
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEEECc---chhHHHhc---------C-CccCEEEEecCCc------cc-c-----ch
Confidence 666 556788999999999999999875 12233211 1 123 344443221 11 1 12
Q ss_pred HHHHHHHHHHhcCCCCEEEECCCccchHHHHHHhCCCee
Q psy15557 146 GSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKV 184 (207)
Q Consensus 146 GSi~L~~EAl~~~~PDVfIDTmGyaFtyPl~k~l~g~~V 184 (207)
....--...+.+..||+.||..|- +..-+..++.|.++
T Consensus 67 ~~~~~l~~~l~~~~~D~vid~~~~-~~sa~~~~~~~~~~ 104 (348)
T 1psw_A 67 GERRKLGHSLREKRYDRAYVLPNS-FKSALVPLFAGIPH 104 (348)
T ss_dssp HHHHHHHHHTTTTTCSEEEECSCC-SGGGHHHHHTTCSE
T ss_pred HHHHHHHHHHHhcCCCEEEECCCC-hHHHHHHHHhCCCE
Confidence 233333456778889999999883 33334445667654
No 18
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=83.05 E-value=5.7 Score=34.20 Aligned_cols=38 Identities=16% Similarity=0.063 Sum_probs=28.6
Q ss_pred EEEEccCCC---CCCcchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 55 VAFFHPYCN---AGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 55 VgFFHPycn---aGGGGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
|.+..++.. ..||.|++...-.++|+++ ++.+.|.|.+
T Consensus 3 Il~v~~~~~P~~~~GG~~~~~~~la~~L~~~--G~~V~vi~~~ 43 (485)
T 1rzu_A 3 VLSVSSEIYPLIKTGGLADVVGALPIALEAH--GVRTRTLIPG 43 (485)
T ss_dssp EEEECSCBTTTBCSSHHHHHHHHHHHHHHTT--TCEEEEEEEC
T ss_pred EEEEeeeeccccccccHHHHHHHHHHHHHHc--CCeEEEEecc
Confidence 555555432 2568999999999999987 7888888765
No 19
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=78.17 E-value=17 Score=30.21 Aligned_cols=40 Identities=13% Similarity=0.188 Sum_probs=26.8
Q ss_pred HHHHhcCCCCEEEECCCccchHHHHHHhCCCeeEEeeeCcc
Q psy15557 152 VEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPT 192 (207)
Q Consensus 152 ~EAl~~~~PDVfIDTmGyaFtyPl~k~l~g~~V~~YvHYPt 192 (207)
.+.+.+..||+.+-+. ..+.-+++....|.|++.+.|-+.
T Consensus 123 ~~~l~~~~pDvVv~~~-~~~~~~~aa~~~giP~v~~~~~~~ 162 (412)
T 3otg_A 123 QPVIERLRPDLVVQEI-SNYGAGLAALKAGIPTICHGVGRD 162 (412)
T ss_dssp HHHHHHHCCSEEEEET-TCHHHHHHHHHHTCCEEEECCSCC
T ss_pred HHHHHhcCCCEEEECc-hhhHHHHHHHHcCCCEEEeccccc
Confidence 4556778999977664 334444544466899888877654
No 20
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=75.66 E-value=15 Score=30.08 Aligned_cols=43 Identities=14% Similarity=0.043 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCCCCEEEECCCccchHH--HHHHhCCCeeEEeee
Q psy15557 147 SMILGVEALLSFQPDIYIDTMGYAFTYP--LFSYIGGSKVACYIH 189 (207)
Q Consensus 147 Si~L~~EAl~~~~PDVfIDTmGyaFtyP--l~k~l~g~~V~~YvH 189 (207)
.+.--.+.+.+..||+.+-.......++ ++....|.|++.+.|
T Consensus 83 ~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~ip~v~~~~ 127 (375)
T 3beo_A 83 GLEGLDKVMKEAKPDIVLVHGDTTTTFIASLAAFYNQIPVGHVEA 127 (375)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEec
Confidence 3333456677889999887443223333 333456889885554
No 21
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=75.53 E-value=14 Score=32.32 Aligned_cols=95 Identities=19% Similarity=0.208 Sum_probs=49.0
Q ss_pred HHHHHHHhhCC-Cce-EEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhHHHHHHHHH
Q psy15557 74 TAVLALHQKYP-DYK-IYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILG 151 (207)
Q Consensus 74 ~Ai~alq~~~~-~~~-~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslGSi~L~ 151 (207)
--+++++++ | +.. .++.||... +..+..-+.|+++-+ ..|.-- ..+ -++..|....+.-.
T Consensus 45 ~li~~l~~~-~~~~~~~~~~tG~h~----~m~~~~~~~~~i~~~------~~l~v~---~~~----~~~~~~~~~~~~~l 106 (403)
T 3ot5_A 45 PLVLALEKE-PETFESTVVITAQHR----EMLDQVLEIFDIKPD------IDLDIM---KKG----QTLAEITSRVMNGI 106 (403)
T ss_dssp HHHHHHHTC-TTTEEEEEEECC---------CHHHHHHTTCCCS------EECCCC---C-C----CCHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCCcEEEEEecCcH----HHHHHHHHhcCCCCC------cccccC---CCC----CCHHHHHHHHHHHH
Confidence 346777764 5 566 457788532 133333456887433 122110 011 13334433333334
Q ss_pred HHHHhcCCCCEEEECCCccchHH--HHHHhCCCeeEE
Q psy15557 152 VEALLSFQPDIYIDTMGYAFTYP--LFSYIGGSKVAC 186 (207)
Q Consensus 152 ~EAl~~~~PDVfIDTmGyaFtyP--l~k~l~g~~V~~ 186 (207)
.+.+.+..||+.+-.-+..+++| ++....|.||+-
T Consensus 107 ~~~l~~~kPD~Vi~~gd~~~~l~~~laA~~~~IPv~h 143 (403)
T 3ot5_A 107 NEVIAAENPDIVLVHGDTTTSFAAGLATFYQQKMLGH 143 (403)
T ss_dssp HHHHHHHCCSEEEEETTCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHcCCCEEEEECCchhHHHHHHHHHHhCCCEEE
Confidence 55678889999987554456666 233346889853
No 22
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=75.29 E-value=19 Score=30.26 Aligned_cols=43 Identities=14% Similarity=-0.124 Sum_probs=29.2
Q ss_pred HHHHhcCCCCEEEECCCccchHHHHHHhCCCeeEEeeeCcccc
Q psy15557 152 VEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTIT 194 (207)
Q Consensus 152 ~EAl~~~~PDVfIDTmGyaFtyPl~k~l~g~~V~~YvHYPtIS 194 (207)
.+.+.+..||+.|-+.-.++.-+++....|.|++.+.|.+..+
T Consensus 111 ~~~l~~~~PDlVi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~ 153 (415)
T 3rsc_A 111 AEALDGDVPDLVLYDDFPFIAGQLLAARWRRPAVRLSAAFASN 153 (415)
T ss_dssp HHHHSSSCCSEEEEESTTHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred HHHHhccCCCEEEECchhhhHHHHHHHHhCCCEEEEEeccccc
Confidence 4556778999877332345555666556799999998766543
No 23
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=74.65 E-value=34 Score=28.11 Aligned_cols=44 Identities=14% Similarity=-0.070 Sum_probs=28.2
Q ss_pred HHHHhcCCCCEEEECCCccchHHHHHHhCCCeeEEeeeCccccc
Q psy15557 152 VEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITK 195 (207)
Q Consensus 152 ~EAl~~~~PDVfIDTmGyaFtyPl~k~l~g~~V~~YvHYPtISt 195 (207)
.+.+.+..||+.|-++-.++.-+++....|.|++.|.|.+..+.
T Consensus 95 ~~~l~~~~pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~ 138 (402)
T 3ia7_A 95 EEALGDNPPDLVVYDVFPFIAGRLLAARWDRPAVRLTGGFAANE 138 (402)
T ss_dssp HHHHTTCCCSEEEEESTTHHHHHHHHHHHTCCEEEEESSCCCBT
T ss_pred HHHHhccCCCEEEECchHHHHHHHHHHhhCCCEEEEecccccCc
Confidence 34466789998774422444445554456899999887665443
No 24
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=74.55 E-value=12 Score=32.80 Aligned_cols=101 Identities=15% Similarity=0.062 Sum_probs=57.8
Q ss_pred HHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhccee-ecCCceEEEEcCccceeeCCCCCchhhhhHHHHHHHHHHH
Q psy15557 75 AVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIV-LPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVE 153 (207)
Q Consensus 75 Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~-L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslGSi~L~~E 153 (207)
-++++++. --..+|.||.. -..++-+-..+-|+|. -| ..|.. +. -|+ +++.|.++.+++
T Consensus 28 ~~~~l~~~--~~~~~~~tgqh--~~~~~~~~~~~~~~i~~~~------~~l~~----~~-----~~~-~~~~~~~~~~l~ 87 (385)
T 4hwg_A 28 VISEFDKH--TKHILVHTGQN--YAYELNQVFFDDMGIRKPD------YFLEV----AA-----DNT-AKSIGLVIEKVD 87 (385)
T ss_dssp HHHHHHHH--SEEEEEECSCH--HHHHHTHHHHC-CCCCCCS------EECCC----CC-----CCS-HHHHHHHHHHHH
T ss_pred HHHHHHhc--CCEEEEEeCCC--CChhHHHHHHhhCCCCCCc------eecCC----CC-----CCH-HHHHHHHHHHHH
Confidence 36677765 23567779852 1123333345778873 22 33442 11 233 778887777766
Q ss_pred H-HhcCCCCEEEECCCccchHH-HHHHhCCCeeEEeeeCcccccc
Q psy15557 154 A-LLSFQPDIYIDTMGYAFTYP-LFSYIGGSKVACYIHYPTITKA 196 (207)
Q Consensus 154 A-l~~~~PDVfIDTmGyaFtyP-l~k~l~g~~V~~YvHYPtIStD 196 (207)
. +.+..||+.+-.-++..+++ ++....|.||+ ++|=+.-|-|
T Consensus 88 ~~l~~~kPD~Vlv~gd~~~~~aalaA~~~~IPv~-h~eaglrs~~ 131 (385)
T 4hwg_A 88 EVLEKEKPDAVLFYGDTNSCLSAIAAKRRKIPIF-HMEAGNRCFD 131 (385)
T ss_dssp HHHHHHCCSEEEEESCSGGGGGHHHHHHTTCCEE-EESCCCCCSC
T ss_pred HHHHhcCCcEEEEECCchHHHHHHHHHHhCCCEE-EEeCCCcccc
Confidence 5 67789999987655556665 22234588974 5554555544
No 25
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=70.67 E-value=47 Score=27.97 Aligned_cols=119 Identities=10% Similarity=-0.002 Sum_probs=61.0
Q ss_pred EEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccc---ee
Q psy15557 54 TVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRK---FV 130 (207)
Q Consensus 54 ~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~---lv 130 (207)
.|.|+ | ..++|-.+.+-.-+++|+++ ++.+.+.|++. .+ +.+++ ..++|+.+.... ..
T Consensus 9 kIl~~-~--~~~~Gh~~p~~~la~~L~~~--G~~V~~~~~~~---~~---~~~~~--------~g~~~~~~~~~~~~~~~ 69 (430)
T 2iyf_A 9 HIAMF-S--IAAHGHVNPSLEVIRELVAR--GHRVTYAIPPV---FA---DKVAA--------TGPRPVLYHSTLPGPDA 69 (430)
T ss_dssp EEEEE-C--CSCHHHHGGGHHHHHHHHHT--TCEEEEEECGG---GH---HHHHT--------TSCEEEECCCCSCCTTS
T ss_pred eEEEE-e--CCCCccccchHHHHHHHHHC--CCeEEEEeCHH---HH---HHHHh--------CCCEEEEcCCcCccccc
Confidence 46665 3 34556677777888889887 78999998862 12 22221 234455544310 00
Q ss_pred eCCCCC-c-hhhh---hHHH-HHHHHHHHHHhcCCCCEEEECCCccchHHHHHHhCCCeeEEeeeCcc
Q psy15557 131 EASLYP-Y-FTLL---GQSI-GSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPT 192 (207)
Q Consensus 131 e~~~yp-~-fTLL---gQsl-GSi~L~~EAl~~~~PDVfIDTmGyaFtyPl~k~l~g~~V~~YvHYPt 192 (207)
.++.++ . ...+ .+.. ...---.+.+.+..||+.|-++....+..+++ ..|.|++.+.|.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~A~-~~giP~v~~~~~~~ 136 (430)
T 2iyf_A 70 DPEAWGSTLLDNVEPFLNDAIQALPQLADAYADDIPDLVLHDITSYPARVLAR-RWGVPAVSLSPNLV 136 (430)
T ss_dssp CGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHTTSCCSEEEEETTCHHHHHHHH-HHTCCEEEEESSCC
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEECCccHHHHHHHH-HcCCCEEEEecccc
Confidence 000001 1 1111 1111 11222234456678998886654333444445 35888888876554
No 26
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=68.69 E-value=4.1 Score=35.86 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=35.3
Q ss_pred ccEEEEEccCCCCC--CcchhHHHHHHHHHHhhCCCceEEEEcCCCC
Q psy15557 52 LKTVAFFHPYCNAG--GGGERVLWTAVLALHQKYPDYKIYIYTGDVD 96 (207)
Q Consensus 52 ~~~VgFFHPycnaG--GGGERVLW~Ai~alq~~~~~~~~vIYTgd~~ 96 (207)
.+.|+++.|+-+.| .||+++...-.++|+++ ++.+.|+|.+..
T Consensus 46 ~mrI~~v~~~~~p~~~~GG~~~v~~la~~L~~~--GheV~Vvt~~~~ 90 (413)
T 2x0d_A 46 GKRLNLLVPSINQEHMFGGISTALKLFEQFDNK--KFKKRIILTDAT 90 (413)
T ss_dssp SCEEEEEESCCCGGGCSHHHHHHHHHHTTSCTT--TCEEEEEESSCC
T ss_pred CceEEEEeCCCCccccccHHHHHHHHHHHHHHc--CCceEEEEecCC
Confidence 36799999999876 38888887888888776 899999998743
No 27
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=66.93 E-value=30 Score=30.40 Aligned_cols=91 Identities=16% Similarity=0.245 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhHHHHHHH
Q psy15557 70 RVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMI 149 (207)
Q Consensus 70 RVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslGSi~ 149 (207)
..|-.|+..+.++.|+.+.+|.-+| +...+++.+.+++ .|++ +++|.|.--..+. . .
T Consensus 391 ~~li~a~~~l~~~~~~~~l~i~G~~-g~~~~~l~~~~~~-~~l~--~~~v~~~g~~~~~-----~---~----------- 447 (568)
T 2vsy_A 391 PQSMARMLAVLREVPDSVLWLLSGP-GEADARLRAFAHA-QGVD--AQRLVFMPKLPHP-----Q---Y----------- 447 (568)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEECCS-TTHHHHHHHHHHH-TTCC--GGGEEEECCCCHH-----H---H-----------
T ss_pred HHHHHHHHHHHHhCCCcEEEEecCC-HHHHHHHHHHHHH-cCCC--hhHEEeeCCCCHH-----H---H-----------
Confidence 4566888888888999998887545 3344556556544 3432 2466665322110 0 0
Q ss_pred HHHHHHhcCCCCEEEECCCccchHHHHH-HhCCCeeEEe
Q psy15557 150 LGVEALLSFQPDIYIDTMGYAFTYPLFS-YIGGSKVACY 187 (207)
Q Consensus 150 L~~EAl~~~~PDVfIDTmGyaFtyPl~k-~l~g~~V~~Y 187 (207)
.+.+. .-|+|+++.-++|...+.= ...|+||+++
T Consensus 448 --~~~~~--~adv~v~ps~~~~g~~~lEAma~G~Pvv~~ 482 (568)
T 2vsy_A 448 --LARYR--HADLFLDTHPYNAHTTASDALWTGCPVLTT 482 (568)
T ss_dssp --HHHGG--GCSEEECCSSSCCSHHHHHHHHTTCCEEBC
T ss_pred --HHHHh--cCCEEeeCCCCCCcHHHHHHHhCCCCEEec
Confidence 01112 2589999887766666663 3458888884
No 28
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=65.20 E-value=41 Score=27.57 Aligned_cols=41 Identities=17% Similarity=0.064 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCCCEEEECCCccchHH--HHHHhCCCeeEEeee
Q psy15557 149 ILGVEALLSFQPDIYIDTMGYAFTYP--LFSYIGGSKVACYIH 189 (207)
Q Consensus 149 ~L~~EAl~~~~PDVfIDTmGyaFtyP--l~k~l~g~~V~~YvH 189 (207)
.-..+.+.+..||+.+-..+....+| ++....|.|++.+.|
T Consensus 76 ~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~ 118 (384)
T 1vgv_A 76 EGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEA 118 (384)
T ss_dssp HHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHTTTCCEEEESC
T ss_pred HHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEec
Confidence 33455677889999987544222333 334456889887666
No 29
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=61.74 E-value=50 Score=27.57 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=26.7
Q ss_pred HHHhcCCCCEEEECCCccchHHHHHHhCCCeeEEeeeCccccc
Q psy15557 153 EALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITK 195 (207)
Q Consensus 153 EAl~~~~PDVfIDTmGyaFtyPl~k~l~g~~V~~YvHYPtISt 195 (207)
+.+.+..||+.+-++ .++.-+++....|.+++.+.|-+....
T Consensus 117 ~~~~~~~pDlVv~d~-~~~~~~~~a~~~giP~v~~~~~~~~~~ 158 (398)
T 4fzr_A 117 ALAERWKPDLVLTET-YSLTGPLVAATLGIPWIEQSIRLASPE 158 (398)
T ss_dssp HHHHHHCCSEEEEET-TCTHHHHHHHHHTCCEEEECCSSCCCH
T ss_pred HHHHhCCCCEEEECc-cccHHHHHHHhhCCCEEEeccCCCCch
Confidence 345667899766433 344445554456899999888765443
No 30
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=59.15 E-value=21 Score=30.54 Aligned_cols=99 Identities=14% Similarity=0.058 Sum_probs=57.3
Q ss_pred EEEEEccCCCCCCcchhHHHH-HHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCce-EEEEcCccceee
Q psy15557 54 TVAFFHPYCNAGGGGERVLWT-AVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAI-NFVYLYRRKFVE 131 (207)
Q Consensus 54 ~VgFFHPycnaGGGGERVLW~-Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i-~FV~Lr~r~lve 131 (207)
.|-+.++. +=|+=|+=. ++++++++||+.++.+-++.. -.++++. + ..| +++...++..
T Consensus 10 ~iLvi~~~----~lGD~i~~~P~l~~L~~~~P~a~I~~l~~~~---~~~l~~~---------~-p~vd~vi~~~~~~~-- 70 (349)
T 3tov_A 10 RIVVTFLM----HLGDVILTTPFLEVLRKAAPHSHITYVIDEK---LQQVMEY---------N-PNIDELIVVDKKGR-- 70 (349)
T ss_dssp EEEEECCC----CHHHHHTTHHHHHHHHHHCTTSEEEEEEEGG---GGGGTSS---------C-TTCSEEEEECCSSH--
T ss_pred EEEEEecC----cccHHHHHHHHHHHHHHHCCCCEEEEEECcc---hhHHHhc---------C-CCccEEEEeCcccc--
Confidence 46666652 345555444 789999999999999988651 2222221 1 223 3444443321
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHhcCCC-CEEEECCCccchHHHHHHhCCC
Q psy15557 132 ASLYPYFTLLGQSIGSMILGVEALLSFQP-DIYIDTMGYAFTYPLFSYIGGS 182 (207)
Q Consensus 132 ~~~yp~fTLLgQslGSi~L~~EAl~~~~P-DVfIDTmGyaFtyPl~k~l~g~ 182 (207)
...+..+.--...|.+..+ |+.||.+|..-+--+.+ +.|.
T Consensus 71 ----------~~~~~~~~~l~~~Lr~~~y~D~vidl~~~~rs~~l~~-~~~a 111 (349)
T 3tov_A 71 ----------HNSISGLNEVAREINAKGKTDIVINLHPNERTSYLAW-KIHA 111 (349)
T ss_dssp ----------HHHHHHHHHHHHHHHHHCCCCEEEECCCSHHHHHHHH-HHCC
T ss_pred ----------cccHHHHHHHHHHHhhCCCCeEEEECCCChHHHHHHH-HhCC
Confidence 1123333333455777788 99999998765554544 5554
No 31
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=58.79 E-value=76 Score=26.20 Aligned_cols=38 Identities=8% Similarity=-0.004 Sum_probs=25.5
Q ss_pred HHHhcCCCCEEEECCCccchHHHHHHhCCCeeEEeeeCc
Q psy15557 153 EALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYP 191 (207)
Q Consensus 153 EAl~~~~PDVfIDTmGyaFtyPl~k~l~g~~V~~YvHYP 191 (207)
+.+.+..||+.+-+. ..+.-.++....|.+++.+.|-+
T Consensus 108 ~~l~~~~PD~Vv~~~-~~~~~~~aa~~~giP~v~~~~~~ 145 (391)
T 3tsa_A 108 RLAEAWRPSVLLVDV-CALIGRVLGGLLDLPVVLHRWGV 145 (391)
T ss_dssp HHHHHHCCSEEEEET-TCHHHHHHHHHTTCCEEEECCSC
T ss_pred HHHHhcCCCEEEeCc-chhHHHHHHHHhCCCEEEEecCC
Confidence 445677999665443 45555555556799999887765
No 32
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=57.51 E-value=81 Score=26.06 Aligned_cols=39 Identities=13% Similarity=-0.027 Sum_probs=25.1
Q ss_pred HHHhcCCCCEEEECCCccchHHHHHHhCCCeeEEeeeCcc
Q psy15557 153 EALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPT 192 (207)
Q Consensus 153 EAl~~~~PDVfIDTmGyaFtyPl~k~l~g~~V~~YvHYPt 192 (207)
+.+.+..||+.|-+.+.....-+++ ..|.|++...|-|.
T Consensus 101 ~~l~~~~pD~Vi~~~~~~~~~~~a~-~~giP~v~~~~~~~ 139 (384)
T 2p6p_A 101 DFSRAWRPDLIVGGTMSYVAPLLAL-HLGVPHARQTWDAV 139 (384)
T ss_dssp HHHHHHCCSEEEEETTCTHHHHHHH-HHTCCEEEECCSSC
T ss_pred HHHhccCCcEEEECcchhhHHHHHH-hcCCCEEEeccCCc
Confidence 4456678999987764333333444 45888887777664
No 33
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=54.23 E-value=23 Score=30.01 Aligned_cols=48 Identities=33% Similarity=0.436 Sum_probs=33.0
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCC------CChhHHHHHHHHh
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVD------ASPSEIIKRAHQR 109 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~------~~~~~il~~a~~r 109 (207)
+.||+|+ +|=||--|+ +++.+..|+.. .||-+|.+ .+.++|.+++.+.
T Consensus 22 ~~IgvfD----SGvGGltv~----~~i~~~lP~~~-~iy~~D~~~~PyG~~s~~~i~~~~~~i 75 (285)
T 2jfn_A 22 PTVLVFD----SGVGGLSVY----DEIRHLLPDLH-YIYAFDNVAFPYGEKSEAFIVERVVAI 75 (285)
T ss_dssp EEEEEEE----SSSTHHHHH----HHHHHHSTTSE-EEEEECTTTCCTTTSCHHHHHHHHHHH
T ss_pred CcEEEEe----CCccHHHHH----HHHHHhCCCCC-eEEeeccCCCCCccCCHHHHHHHHHHH
Confidence 5699998 556676655 66666777665 56878863 4677777776654
No 34
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=54.03 E-value=90 Score=25.54 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=25.1
Q ss_pred HHHHhcCCCCEEEECCCccchHH--HHHHhCCCeeEEeeeCccc
Q psy15557 152 VEALLSFQPDIYIDTMGYAFTYP--LFSYIGGSKVACYIHYPTI 193 (207)
Q Consensus 152 ~EAl~~~~PDVfIDTmGyaFtyP--l~k~l~g~~V~~YvHYPtI 193 (207)
.+.+.+..||+.+-..+..+.+| ++....|.|++ ++|-+..
T Consensus 84 ~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v-~~~~~~~ 126 (376)
T 1v4v_A 84 ARALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPVG-HVEAGLR 126 (376)
T ss_dssp HHHHHHTTCSEEEEESSCHHHHHHHHHHHHTTCCEE-EETCCCC
T ss_pred HHHHHHcCCCEEEEeCChHHHHHHHHHHHHhCCCEE-EEeCCCc
Confidence 45567889999887544344454 33445688986 4554433
No 35
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=51.69 E-value=24 Score=25.07 Aligned_cols=56 Identities=11% Similarity=0.362 Sum_probs=35.7
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCC--ceEEEEcCCCCCChhHHHHHHHHhcceee
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPD--YKIYIYTGDVDASPSEIIKRAHQRFNIVL 114 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~--~~~vIYTgd~~~~~~~il~~a~~rF~i~L 114 (207)
..|-|+.+.|..+ +-.-..++.+++++++ ..++..+-| .++.+-+++..++++++.
T Consensus 31 ~lv~f~~~~C~~C----~~~~~~l~~l~~~~~~~~~~vv~v~~~--~~~~~~~~~~~~~~~~~~ 88 (153)
T 2l5o_A 31 TLINFWFPSCPGC----VSEMPKIIKTANDYKNKNFQVLAVAQP--IDPIESVRQYVKDYGLPF 88 (153)
T ss_dssp EEEEEECTTCTTH----HHHHHHHHHHHHHGGGTTEEEEEEECT--TSCHHHHHHHHHHTTCCS
T ss_pred EEEEEECCCCccH----HHHHHHHHHHHHHhccCCeEEEEEecC--CCCHHHHHHHHHHcCCCc
Confidence 5678889999776 6666778888887764 444444433 334455555666676554
No 36
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=50.91 E-value=1.2e+02 Score=25.88 Aligned_cols=103 Identities=10% Similarity=-0.065 Sum_probs=52.9
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccce-ee----CCCCCchhhhhHHHHHH
Q psy15557 74 TAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKF-VE----ASLYPYFTLLGQSIGSM 148 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~l-ve----~~~yp~fTLLgQslGSi 148 (207)
.-.++|+++ ++.+.++|+.. -. +.+++ .| ++|+.+....- .+ ++..-....+.+.+...
T Consensus 19 ~La~~L~~~--Gh~V~v~~~~~---~~---~~v~~-~g-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (404)
T 3h4t_A 19 ALAARLREL--GADARMCLPPD---YV---ERCAE-VG-------VPMVPVGRAVRAGAREPGELPPGAAEVVTEVVAEW 82 (404)
T ss_dssp HHHHHHHHT--TCCEEEEECGG---GH---HHHHH-TT-------CCEEECSSCSSGGGSCTTCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHHHC--CCeEEEEeCHH---HH---HHHHH-cC-------CceeecCCCHHHHhccccCCHHHHHHHHHHHHHHH
Confidence 456777776 78999998751 12 22221 22 23333332110 00 01111233455555555
Q ss_pred HHHHHHHhcCCCCEEEECCCccchH--HHHHHhCCCeeEEeeeCccc
Q psy15557 149 ILGVEALLSFQPDIYIDTMGYAFTY--PLFSYIGGSKVACYIHYPTI 193 (207)
Q Consensus 149 ~L~~EAl~~~~PDVfIDTmGyaFty--Pl~k~l~g~~V~~YvHYPtI 193 (207)
+-.+.++.+ .||+.|-+...++.. +++.-..|.|+++-.|.|..
T Consensus 83 ~~~l~~~~~-~pD~Vi~~~~~~~~~~a~~~A~~lgiP~v~~~~~p~~ 128 (404)
T 3h4t_A 83 FDKVPAAIE-GCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDH 128 (404)
T ss_dssp HHHHHHHHT-TCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGG
T ss_pred HHHHHHHhc-CCCEEEECCchhhhhhhhhHHhhcCCCEEEEEcCCcc
Confidence 555455443 699886443334443 34433458999988888863
No 37
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=49.14 E-value=31 Score=23.85 Aligned_cols=59 Identities=8% Similarity=0.204 Sum_probs=37.2
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCC--CceEEEEcCCCCCChhHHHHHHHHhcceeec
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYP--DYKIYIYTGDVDASPSEIIKRAHQRFNIVLP 115 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~--~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~ 115 (207)
..|-|+.+.|..+ +-.-..++.++++++ +..++--+.|.+.+..+-+++..+.++++.+
T Consensus 37 ~ll~f~~~~C~~C----~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~ 97 (145)
T 3erw_A 37 TILHFWTSWCPPC----KKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFP 97 (145)
T ss_dssp EEEEEECSSCHHH----HHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSC
T ss_pred EEEEEECCCCHHH----HHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCcee
Confidence 4677888998765 666678888999987 5555544544322234445555566666543
No 38
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=48.46 E-value=46 Score=25.09 Aligned_cols=59 Identities=15% Similarity=0.220 Sum_probs=39.1
Q ss_pred cchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHh-cc--eee---cCCceEEEEcCccce
Q psy15557 67 GGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQR-FN--IVL---PEQAINFVYLYRRKF 129 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~r-F~--i~L---~~~~i~FV~Lr~r~l 129 (207)
-+..+|=.+++.+++++|++++-+.+++ .+++.+..++. .+ +.. +++.+++..|...++
T Consensus 18 ~~~~~lp~~l~~f~~~~P~v~l~l~~~~----~~~l~~~L~~g~iDl~i~~~~~~~~~l~~~~l~~~~~ 82 (218)
T 2y7p_A 18 GEMYFMPPLMEALAQRAPHIQISTLRPN----AGNLKEDMESGAVDLALGLLPELQTGFFQRRLFRHRY 82 (218)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEECCC----TTTHHHHHHHTSSCEEEECCTTCCTTEEEEEEEEECE
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEeCC----cccHHHHHhCCCceEEEecCCCCCcceeEEEeeeccE
Confidence 3567888999999999999999998865 35566665542 22 211 123466666666443
No 39
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=47.47 E-value=60 Score=22.51 Aligned_cols=55 Identities=9% Similarity=0.198 Sum_probs=35.0
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhC-CCceEEEEcCCCCCChhHHHHHHHHhcce
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKY-PDYKIYIYTGDVDASPSEIIKRAHQRFNI 112 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~-~~~~~vIYTgd~~~~~~~il~~a~~rF~i 112 (207)
..|-|+-+.|..+ +-.-..++.+++++ ++..+.++.-+.+.+++++.+-+ +.+++
T Consensus 36 vll~F~~~~C~~C----~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~-~~~~~ 91 (148)
T 3fkf_A 36 LLLNFWASWCDPQ----PEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAI-KKDTL 91 (148)
T ss_dssp EEEEEECGGGCCC----HHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHH-HHTTC
T ss_pred EEEEEECCCCHHH----HHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHH-HHcCC
Confidence 5677999999887 77778889999988 65434444333334555544443 44444
No 40
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=46.36 E-value=93 Score=27.61 Aligned_cols=122 Identities=13% Similarity=0.030 Sum_probs=62.1
Q ss_pred EEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCCh--hHHHHHHHHhcceeecCCceEEEEcCccceee
Q psy15557 54 TVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASP--SEIIKRAHQRFNIVLPEQAINFVYLYRRKFVE 131 (207)
Q Consensus 54 ~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~--~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve 131 (207)
.|.++ |+-.. |==-=+-.-.+.|.++.|++++.+.|++....+ .+.+++..+ . +..++|+.+....+=+
T Consensus 11 ~vv~~-p~p~~--GHi~P~l~La~~L~~r~pG~~Vt~v~t~~~~~~~~~~~~~~~~~-----~-~~~i~~~~lp~~~~~~ 81 (463)
T 2acv_A 11 ELIFI-PAPGI--GHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLA-----S-QPQIQLIDLPEVEPPP 81 (463)
T ss_dssp EEEEE-CCSST--TTHHHHHHHHHHHHHTCTTEEEEEEECCCTTCCCCHHHHHHHHC-----S-CTTEEEEECCCCCCCC
T ss_pred EEEEE-cCccc--chHHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhhhhhhccc-----C-CCCceEEECCCCCCCc
Confidence 35554 55332 222334455667777778999999988743221 233333211 1 1457777776432111
Q ss_pred CCCCCchh-hhhHHHHHHHHHHHHHh-c---CCCCEEEECCCccchHHHHHHhCCCeeE
Q psy15557 132 ASLYPYFT-LLGQSIGSMILGVEALL-S---FQPDIYIDTMGYAFTYPLFSYIGGSKVA 185 (207)
Q Consensus 132 ~~~yp~fT-LLgQslGSi~L~~EAl~-~---~~PDVfIDTmGyaFtyPl~k~l~g~~V~ 185 (207)
.+..+... .+.+.+....-.++.+. + ..||+.|-++..+.+..+++.+ |.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~d~vI~D~~~~~~~~vA~~l-giP~v 139 (463)
T 2acv_A 82 QELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEF-GIPSY 139 (463)
T ss_dssp GGGGGSHHHHHHHHHHHTHHHHHHHHHHHCCTTEEEEEEEGGGGGGHHHHHHT-TCCEE
T ss_pred ccccCCccHHHHHHHHhhhHHHHHHHHhccCCCCeEEEECCcchhHHHHHHHc-CCCEE
Confidence 10001100 02222222222233333 2 5789888877788888888865 56533
No 41
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*
Probab=45.30 E-value=23 Score=31.18 Aligned_cols=42 Identities=10% Similarity=0.075 Sum_probs=33.5
Q ss_pred HHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCc
Q psy15557 75 AVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQA 118 (207)
Q Consensus 75 Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~ 118 (207)
+++.++++ +.++++-|+....++++..++.++++|++.+++.
T Consensus 37 ~l~~l~~~--g~~~~~vTNn~~~~~~~~~~~l~~~lgi~~~~~~ 78 (352)
T 3kc2_A 37 ALKLLNRN--KIPYILLTNGGGFSERARTEFISSKLDVDVSPLQ 78 (352)
T ss_dssp HHHHHHHT--TCCEEEECSCCSSCHHHHHHHHHHHHTSCCCGGG
T ss_pred HHHHHHHC--CCEEEEEeCCCCCCchHHHHHHHHhcCCCCChhh
Confidence 66777775 7888888988777899999999988998766443
No 42
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=44.83 E-value=31 Score=29.05 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=36.9
Q ss_pred ccCCCCCCcchhHH----HHHHHHHHhh--CCCceEEEEcCCCCCChhHHHHHHHHhcc
Q psy15557 59 HPYCNAGGGGERVL----WTAVLALHQK--YPDYKIYIYTGDVDASPSEIIKRAHQRFN 111 (207)
Q Consensus 59 HPycnaGGGGERVL----W~Ai~alq~~--~~~~~~vIYTgd~~~~~~~il~~a~~rF~ 111 (207)
|||...-+|.+.-+ -..+++..++ .|++-+++-+|| .+++++.+.+++.|+
T Consensus 149 ~p~~~~~~G~~~~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd--~~~~~~~~~i~~~f~ 205 (406)
T 3eoq_A 149 HPLGNSVLGTRESITALTREGMAAYHRRRYLPKNMVLAATGR--VDFDRLLAEAERLTE 205 (406)
T ss_dssp CGGGCCSSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEES--CCHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHhhCCHHHHHHHHHHhCCccCEEEEEEcC--CCHHHHHHHHHHHhc
Confidence 89998877776554 3344444444 367777777898 689999999999884
No 43
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=43.55 E-value=23 Score=33.90 Aligned_cols=52 Identities=23% Similarity=0.411 Sum_probs=39.0
Q ss_pred EccCCCCCCcchhHHHHH-----------HHHHHhh-C-CCceEEEEcCCCCCChhHHHHHHHHhcc
Q psy15557 58 FHPYCNAGGGGERVLWTA-----------VLALHQK-Y-PDYKIYIYTGDVDASPSEIIKRAHQRFN 111 (207)
Q Consensus 58 FHPycnaGGGGERVLW~A-----------i~alq~~-~-~~~~~vIYTgd~~~~~~~il~~a~~rF~ 111 (207)
-|||...++|-+..|-.. +++..++ | |++-.++-.|| .+.+++.+.+++.|+
T Consensus 183 ~~py~~~~~G~~~~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd--~~~~~~~~~i~~~f~ 247 (990)
T 3cww_A 183 KHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGR--ESLDDLTNLVVKLFS 247 (990)
T ss_dssp TSGGGCCCSCCHHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEES--SCHHHHHHHHHHHHT
T ss_pred CCCcccCCCCCHHHHhhccccccchHHHHHHHHHHHhCCHhheEEEEEcC--CCHHHHHHHHHHHhc
Confidence 499999888887776444 4444444 3 77777777888 579999999999996
No 44
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=43.46 E-value=51 Score=24.09 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=21.8
Q ss_pred CCCCCCcch--hHH-HHHHHHHHhhCCCceEEEEc
Q psy15557 61 YCNAGGGGE--RVL-WTAVLALHQKYPDYKIYIYT 92 (207)
Q Consensus 61 ycnaGGGGE--RVL-W~Ai~alq~~~~~~~~vIYT 92 (207)
||+.||.-+ |=. =.....+|+++|++.+.|-.
T Consensus 26 yc~~~~sS~G~R~Fl~~~l~~~k~~NP~v~i~v~~ 60 (102)
T 1s3a_A 26 LCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRE 60 (102)
T ss_dssp CCSSSCCCHHHHHHHHHTHHHHHHHSTTCCEEEEC
T ss_pred EcCCCCCchhHHHHHHHhhHHHHHHCCCceEEEEE
Confidence 688887533 322 23577888899999888753
No 45
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=43.01 E-value=62 Score=23.34 Aligned_cols=47 Identities=6% Similarity=0.139 Sum_probs=34.9
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHh
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQR 109 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~r 109 (207)
.+||..+.. +..++-..+..+++++|++++-+.+++ .+++.+..++.
T Consensus 6 l~Ig~~~~~------~~~~l~~~l~~~~~~~P~i~i~i~~~~----~~~~~~~l~~g 52 (219)
T 3jv9_A 6 FKLGLIFTV------APYLLPKLIVSLRRTAPKMPLMLEENY----THTLTESLKRG 52 (219)
T ss_dssp EEEEEETTT------HHHHHHHHHHHHHHHSTTCCEEEEEEC----HHHHHHHHHHT
T ss_pred EEEEEcchh------hHHHHHHHHHHHHHHCCCcEEEEEeCC----cHHHHHHHHcC
Confidence 456665432 456888999999999999999998865 46677776653
No 46
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=42.75 E-value=6.7 Score=22.37 Aligned_cols=10 Identities=50% Similarity=0.950 Sum_probs=6.9
Q ss_pred CCCCCCcchh.....
Q psy15557 61 YCNAGGGGER..... 70 (207)
Q Consensus 61 ycnaGGGGER..... 70 (207)
.||.||||.|
T Consensus 12 s~~sg~g~rr..... 21 (21)
T 3u85_B 12 TGGGGGGGRRxxxxx 26 (26)
T ss_pred ccCCCccccC.....
Confidence 4778877754
No 47
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=42.73 E-value=26 Score=28.84 Aligned_cols=102 Identities=14% Similarity=0.043 Sum_probs=55.5
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEE-cCccceee
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVY-LYRRKFVE 131 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~-Lr~r~lve 131 (207)
.++.+.|+-.+.+ |...|-.|++.+.+++|+.++++-+|+. + +..++.++..+. . +++.|+- +..+..
T Consensus 200 ~vl~~~gr~~~~k--~~~~ll~a~~~l~~~~~~~~lv~~~g~~---~-~~~~~l~~~~~~--~-~~v~~~g~~g~~~~-- 268 (376)
T 1v4v_A 200 YVTVTMHRRENWP--LLSDLAQALKRVAEAFPHLTFVYPVHLN---P-VVREAVFPVLKG--V-RNFVLLDPLEYGSM-- 268 (376)
T ss_dssp EEEECCCCGGGGG--GHHHHHHHHHHHHHHCTTSEEEEECCSC---H-HHHHHHHHHHTT--C-TTEEEECCCCHHHH--
T ss_pred EEEEEeCcccchH--HHHHHHHHHHHHHhhCCCeEEEEECCCC---H-HHHHHHHHHhcc--C-CCEEEECCCCHHHH--
Confidence 3455566554444 5777889999998888998887767862 1 233333333221 2 4666651 111100
Q ss_pred CCCCCchh-hhhHHHHHHHHHHHHHhcCCCCEEEECCC
Q psy15557 132 ASLYPYFT-LLGQSIGSMILGVEALLSFQPDIYIDTMG 168 (207)
Q Consensus 132 ~~~yp~fT-LLgQslGSi~L~~EAl~~~~PDVfIDTmG 168 (207)
++.|.... +++-| |++ ..||+..-.|=|..+..|
T Consensus 269 ~~~~~~ad~~v~~S-~g~--~lEA~a~G~PvI~~~~~~ 303 (376)
T 1v4v_A 269 AALMRASLLLVTDS-GGL--QEEGAALGVPVVVLRNVT 303 (376)
T ss_dssp HHHHHTEEEEEESC-HHH--HHHHHHTTCCEEECSSSC
T ss_pred HHHHHhCcEEEECC-cCH--HHHHHHcCCCEEeccCCC
Confidence 00111111 11223 554 679999999977775543
No 48
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=42.44 E-value=1.5e+02 Score=24.71 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=25.6
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcC
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTG 93 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTg 93 (207)
..|.|.-+ .|+|...-.-.-+++|+++ ++.+.++|+
T Consensus 21 MrIl~~~~---~~~Ghv~~~~~La~~L~~~--GheV~v~~~ 56 (398)
T 3oti_A 21 MRVLFVSS---PGIGHLFPLIQLAWGFRTA--GHDVLIAVA 56 (398)
T ss_dssp CEEEEECC---SSHHHHGGGHHHHHHHHHT--TCEEEEEES
T ss_pred CEEEEEcC---CCcchHhHHHHHHHHHHHC--CCEEEEecc
Confidence 46787743 3556555555667788886 899999997
No 49
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=42.17 E-value=83 Score=23.05 Aligned_cols=57 Identities=9% Similarity=0.076 Sum_probs=38.5
Q ss_pred cchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHh-cceee-----cCCceEEEEcCcc
Q psy15557 67 GGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQR-FNIVL-----PEQAINFVYLYRR 127 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~r-F~i~L-----~~~~i~FV~Lr~r 127 (207)
-++.++-..+..+++++|++++-+.+++ .+++.+..++. .++-+ +.+.+++..|...
T Consensus 21 ~~~~~l~~~l~~~~~~~P~v~i~~~~~~----~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~~~l~~~ 83 (232)
T 3ho7_A 21 IAPYLLPRVFPIWKKELAGLEIHVSEMQ----TSRCLASLLSGEIDMAIIASKAETEGLEDDLLYYE 83 (232)
T ss_dssp THHHHHHHHHHHHHHHSTTEEEEEEECC----HHHHHHHHHHTSCSEEEESSCCCCTTEEEEEEEEE
T ss_pred cchhhhHHHHHHHHHHCCCcEEEEEeCC----HHHHHHHHHcCCCCEEEEcCCCCCCCeEEEEeccc
Confidence 3567899999999999999999998865 46677766653 23221 1234555555553
No 50
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=41.85 E-value=42 Score=23.76 Aligned_cols=58 Identities=12% Similarity=0.238 Sum_probs=34.9
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceee
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVL 114 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L 114 (207)
..|-|+.+.|..+ +-.-..++.+++++++..+.++.=+.+.+..+-+++..++++++.
T Consensus 31 vll~f~~~~C~~C----~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~ 88 (154)
T 3kcm_A 31 VIVNFWATWCPPC----REEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTL 88 (154)
T ss_dssp EEEEEECTTCHHH----HHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCC
T ss_pred EEEEEECCCCHHH----HHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCe
Confidence 4677888888655 666678888888887743433332323343444555555556543
No 51
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=41.73 E-value=80 Score=22.70 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=37.0
Q ss_pred cEEEEEccCCCC-CCcchhHHHHHHHHHHhhCC-----CceEEEEcCCCCCChhHHHHHHHHhcce
Q psy15557 53 KTVAFFHPYCNA-GGGGERVLWTAVLALHQKYP-----DYKIYIYTGDVDASPSEIIKRAHQRFNI 112 (207)
Q Consensus 53 ~~VgFFHPycna-GGGGERVLW~Ai~alq~~~~-----~~~~vIYTgd~~~~~~~il~~a~~rF~i 112 (207)
..|-|+.+.|.. + +-.-..++.++++++ +..++--+.|.+.+..+-+++..++++.
T Consensus 38 vll~f~~~~C~~~C----~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~ 99 (172)
T 2k6v_A 38 VLLFFGFTRCPDVC----PTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHP 99 (172)
T ss_dssp EEEEEECTTCSSHH----HHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCT
T ss_pred EEEEEECCCCcchh----HHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 467788888875 5 666788888888887 5666666666444444445555555553
No 52
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=41.70 E-value=31 Score=24.42 Aligned_cols=46 Identities=17% Similarity=0.392 Sum_probs=29.9
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCC--ceEEEEcCCCCCChhHHHH
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPD--YKIYIYTGDVDASPSEIIK 104 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~--~~~vIYTgd~~~~~~~il~ 104 (207)
..|-|+.+.|..+ +-.-..++.+++++++ ..++.-+.| .+++++.+
T Consensus 31 vll~f~~~~C~~C----~~~~~~l~~l~~~~~~~~~~~v~v~~d--~~~~~~~~ 78 (152)
T 3gl3_A 31 VYLDFWASWCGPC----RQSFPWMNQMQAKYKAKGFQVVAVNLD--AKTGDAMK 78 (152)
T ss_dssp EEEEEECTTCTHH----HHHHHHHHHHHHHHGGGTEEEEEEECC--SSHHHHHH
T ss_pred EEEEEECCcCHHH----HHHHHHHHHHHHHhhcCCeEEEEEECC--CCHHHHHH
Confidence 4577888888776 6667788888888765 344443444 35555544
No 53
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=41.17 E-value=41 Score=30.20 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=35.7
Q ss_pred EEEccCCCCC--CcchhHHHHHHHHHHhhCCCce-EEEEcCCC----CCChhHHHHHHHHhc
Q psy15557 56 AFFHPYCNAG--GGGERVLWTAVLALHQKYPDYK-IYIYTGDV----DASPSEIIKRAHQRF 110 (207)
Q Consensus 56 gFFHPycnaG--GGGERVLW~Ai~alq~~~~~~~-~vIYTgd~----~~~~~~il~~a~~rF 110 (207)
.-+.-.--.| ||.|+ |=.||+.+.+..|+.+ +.|+|+.. +-|-+.+.+++++++
T Consensus 85 T~l~E~diV~~fGg~~k-L~~aI~~~~~~~P~~~~I~V~tTC~~e~IGdDi~~v~~~~~~~~ 145 (437)
T 3aek_A 85 AVLEEQDLAGLADAHKE-LDREVAKLLERRPDIRQLFLVGSCPSEVLKLDLDRAAERLSGLH 145 (437)
T ss_dssp EECCGGGGSSSCCHHHH-HHHHHHHHHHTCTTCCEEEEEECHHHHHTTCCHHHHHHHHHHHS
T ss_pred ecccchhhhhcCCCHHH-HHHHHHHHHHhCCCccEEEEEcCCHHHHhhcCHHHHHHHHHHhc
Confidence 3444444443 45555 6899999885556662 77777642 347788889998875
No 54
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=41.01 E-value=36 Score=29.17 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=30.5
Q ss_pred HHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEc
Q psy15557 75 AVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYL 124 (207)
Q Consensus 75 Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~L 124 (207)
...++.+++|+.+++++. -.+.++.|+++..-... ++|+|+.-
T Consensus 193 ~~~~l~~~~p~~~~~~~d------lp~v~~~a~~~~~~~~~-~rv~~~~g 235 (353)
T 4a6d_A 193 LAKECMSLYPGCKITVFD------IPEVVWTAKQHFSFQEE-EQIDFQEG 235 (353)
T ss_dssp HHHHHHHHCSSCEEEEEE------CHHHHHHHHHHSCC--C-CSEEEEES
T ss_pred HHHHHHHhCCCceeEecc------CHHHHHHHHHhhhhccc-CceeeecC
Confidence 345777889999998863 25688999988765553 78888763
No 55
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=39.82 E-value=41 Score=29.51 Aligned_cols=51 Identities=14% Similarity=0.179 Sum_probs=32.8
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCcccee
Q psy15557 74 TAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFV 130 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lv 130 (207)
...+.+.+++|+.+++.-- .| +++++.|++.|+..-+ ++++++.-..+.++
T Consensus 102 ~la~~la~~~p~~~v~~VE----id-p~vi~~Ar~~~~~~~~-~rv~v~~~Da~~~l 152 (317)
T 3gjy_A 102 TMARYFADVYPQSRNTVVE----LD-AELARLSREWFDIPRA-PRVKIRVDDARMVA 152 (317)
T ss_dssp HHHHHHHHHSTTCEEEEEE----SC-HHHHHHHHHHSCCCCT-TTEEEEESCHHHHH
T ss_pred HHHHHHHHHCCCcEEEEEE----CC-HHHHHHHHHhccccCC-CceEEEECcHHHHH
Confidence 3445666668888765533 33 6789999999975423 57777765544444
No 56
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=38.48 E-value=60 Score=27.26 Aligned_cols=50 Identities=18% Similarity=0.247 Sum_probs=35.8
Q ss_pred ccCCCCCCcchhHH----HHHHHHHHhh--CCCceEEEEcCCCCCChhHHHHHHHHhcc
Q psy15557 59 HPYCNAGGGGERVL----WTAVLALHQK--YPDYKIYIYTGDVDASPSEIIKRAHQRFN 111 (207)
Q Consensus 59 HPycnaGGGGERVL----W~Ai~alq~~--~~~~~~vIYTgd~~~~~~~il~~a~~rF~ 111 (207)
|||...-.|-+.-+ -..+++..++ .|++-.++.+|| .+ +++.+.+++.|+
T Consensus 150 ~p~~~~~~G~~~~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd--~~-~~~~~~v~~~f~ 205 (421)
T 3hdi_A 150 HSLGYPILGTVETLNSFNEGMLRHYMDRFYTGDYVVISVAGN--VH-DELIDKIKETFS 205 (421)
T ss_dssp SGGGSCTTCCHHHHHHCCHHHHHHHHHHHSSTTTEEEEEEES--CC-HHHHHHHHHHTT
T ss_pred CCCCCCCcCCHHHHHhCCHHHHHHHHHHhcCcccEEEEEEeC--CC-HHHHHHHHHHhc
Confidence 89988776766544 3344444444 377888888998 46 899999999886
No 57
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=38.47 E-value=65 Score=23.00 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=28.4
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCC--ceEEEEcCCCCCChhHH
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPD--YKIYIYTGDVDASPSEI 102 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~--~~~vIYTgd~~~~~~~i 102 (207)
..|-|+-+.|..+ +-.-..++.+++++++ ..++--+.| .++++.
T Consensus 32 vll~F~a~~C~~C----~~~~~~l~~l~~~~~~~~~~vv~v~~d--~~~~~~ 77 (152)
T 2lrn_A 32 VLVDFWFAGCSWC----RKETPYLLKTYNAFKDKGFTIYGVSTD--RREEDW 77 (152)
T ss_dssp EEEEEECTTCTTH----HHHHHHHHHHHHHHTTTTEEEEEEECC--SCHHHH
T ss_pred EEEEEECCCChhH----HHHHHHHHHHHHHhccCCeEEEEEEcc--CCHHHH
Confidence 4677888888765 6666778888888765 444444444 344443
No 58
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=38.46 E-value=52 Score=30.31 Aligned_cols=46 Identities=13% Similarity=0.191 Sum_probs=35.0
Q ss_pred cchhHHHHHHHHHHhhCC-CceEEEEcCCC----CCChhHHHHHHHHhcce
Q psy15557 67 GGERVLWTAVLALHQKYP-DYKIYIYTGDV----DASPSEIIKRAHQRFNI 112 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~-~~~~vIYTgd~----~~~~~~il~~a~~rF~i 112 (207)
|||.-|-.+|+.+.++++ ---++|+|+.. .-|-+.+.+++++++++
T Consensus 126 Gg~~kL~~~I~~~~~~~~~P~~I~V~tTC~~e~IGdDl~~v~~~~~~~~~~ 176 (492)
T 3u7q_A 126 GGDKKLAKLIDEVETLFPLNKGISVQSECPIGLIGDDIESVSKVKGAELSK 176 (492)
T ss_dssp CSHHHHHHHHHHHHHHCTTCCCEEEEECTHHHHTTCCHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHHhCCCCCEEEEECCcHHHHHhcCHHHHHHHHHHhhCC
Confidence 467777799999999886 45677787652 34888999999988754
No 59
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=37.90 E-value=37 Score=31.51 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=33.3
Q ss_pred CCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCC----CCChhHHHHHHH
Q psy15557 61 YCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDV----DASPSEIIKRAH 107 (207)
Q Consensus 61 ycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~----~~~~~~il~~a~ 107 (207)
....|||||+-|=.+|+.+.++++---++|+|+.. +-|-+.+.++++
T Consensus 62 e~di~~G~e~kL~~aI~~~~~~~~P~~I~V~tTC~~elIGdDi~~v~~~~~ 112 (525)
T 3aek_B 62 ASHMGTDTAILLKDALAAAHARYKPQAMAVALTCTAELLQDDPNGISRALN 112 (525)
T ss_dssp GGGCTTHHHHHHHHHHHHHHHHHCCSEEEEEECTTGGGSCCCHHHHHHHHT
T ss_pred cceeeCCcHHHHHHHHHHHHHhcCCCEEEEECCcHHHHhcccHHHHHHHhc
Confidence 45678899999999999887664333588887753 236666666665
No 60
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=37.82 E-value=33 Score=29.33 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=30.2
Q ss_pred cchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 67 GGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
+|+..|-.|.+.+++++|+.+.+|. ||.....+++.+.+++
T Consensus 207 k~~~~ll~A~~~l~~~~p~~~lviv-G~g~~~~~~l~~~~~~ 247 (374)
T 2xci_A 207 GEVEIILKAFKEIKKTYSSLKLILV-PRHIENAKIFEKKARD 247 (374)
T ss_dssp GGHHHHHHHHHHHHTTCTTCEEEEE-ESSGGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhCCCcEEEEE-CCCHHHHHHHHHHHHH
Confidence 4788999999999999999998887 5522223466666654
No 61
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=37.64 E-value=1.4e+02 Score=25.72 Aligned_cols=104 Identities=17% Similarity=0.143 Sum_probs=57.7
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCc-cceee
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYR-RKFVE 131 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~-r~lve 131 (207)
.++...|+--|.|-| ...+-.|++.+.+++|+.++++=+|+. .++.+.+++..+ .. +++.|+.--+ ....
T Consensus 232 ~vlv~~hR~~~~~~~-~~~ll~A~~~l~~~~~~~~~v~~~g~~----~~~~~~l~~~~~--~~-~~v~~~~~lg~~~~~- 302 (396)
T 3dzc_A 232 LILVTGHRRESFGGG-FERICQALITTAEQHPECQILYPVHLN----PNVREPVNKLLK--GV-SNIVLIEPQQYLPFV- 302 (396)
T ss_dssp EEEEECSCBCCCTTH-HHHHHHHHHHHHHHCTTEEEEEECCBC----HHHHHHHHHHTT--TC-TTEEEECCCCHHHHH-
T ss_pred EEEEEECCcccchhH-HHHHHHHHHHHHHhCCCceEEEEeCCC----hHHHHHHHHHHc--CC-CCEEEeCCCCHHHHH-
Confidence 456789998777644 667889999999989998776556651 234444444332 12 4555542111 1110
Q ss_pred CCCCCchh-hhhHHHHHHHHHHHHHhcCCCCEEE-ECCCc
Q psy15557 132 ASLYPYFT-LLGQSIGSMILGVEALLSFQPDIYI-DTMGY 169 (207)
Q Consensus 132 ~~~yp~fT-LLgQslGSi~L~~EAl~~~~PDVfI-DTmGy 169 (207)
+.|.... +++-| |++. .||..--.|=|.. |.++.
T Consensus 303 -~l~~~ad~vv~~S-Gg~~--~EA~a~G~PvV~~~~~~~~ 338 (396)
T 3dzc_A 303 -YLMDRAHIILTDS-GGIQ--EEAPSLGKPVLVMRETTER 338 (396)
T ss_dssp -HHHHHCSEEEESC-SGGG--TTGGGGTCCEEECCSSCSC
T ss_pred -HHHHhcCEEEECC-ccHH--HHHHHcCCCEEEccCCCcc
Confidence 0011111 12223 4332 7888888898877 45554
No 62
>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A
Probab=37.49 E-value=27 Score=31.03 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=19.7
Q ss_pred CCChhHHHHHHHHhcceeecCCceEEEEcC
Q psy15557 96 DASPSEIIKRAHQRFNIVLPEQAINFVYLY 125 (207)
Q Consensus 96 ~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr 125 (207)
++.+++|+++.++||| +++.||-+-
T Consensus 213 kiGKesCFerI~~RFG-----~k~~yvvIG 237 (274)
T 3geb_A 213 KTGKESCFERIMQRFG-----RKAVYVVIG 237 (274)
T ss_dssp TTCHHHHHHHHHHHHC-----TTSEEEEEE
T ss_pred hcCHHHHHHHHHHHhC-----CCceEEEEC
Confidence 5789999999999997 446666553
No 63
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=37.36 E-value=1e+02 Score=23.07 Aligned_cols=69 Identities=13% Similarity=0.087 Sum_probs=44.9
Q ss_pred CCccEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHh-cceee-----cCCceEEEE
Q psy15557 50 NVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQR-FNIVL-----PEQAINFVY 123 (207)
Q Consensus 50 ~~~~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~r-F~i~L-----~~~~i~FV~ 123 (207)
++..+||..+. -+..++-..++.+++++|++++-+.+++ .+++.+..++. .++-+ +.+.+++..
T Consensus 18 ~g~l~Ig~~~~------~~~~~l~~~l~~f~~~~P~i~l~~~~~~----~~~~~~~l~~g~~Dl~i~~~~~~~~~~~~~~ 87 (241)
T 3oxn_A 18 DQTFTIATTDY------AMQTILPFALPRIYQEAPNVSFNFLPLQ----HDRLSDQLTYEGADLAICRPTGPVEPLRSEI 87 (241)
T ss_dssp CCEEEEEECSH------HHHHTHHHHHHHHHHHCTTCEEEEEECC----GGGHHHHHHTSCCSEEEECCSSCCTTEEEEE
T ss_pred CceEEEEechH------HHHHHHHHHHHHHHHHCCCCEEEEEECC----cccHHHHHHcCCCCEEEecCCCCCccceeEE
Confidence 33456776443 2457888999999999999999998865 45666666652 22211 124566666
Q ss_pred cCccc
Q psy15557 124 LYRRK 128 (207)
Q Consensus 124 Lr~r~ 128 (207)
|...+
T Consensus 88 l~~~~ 92 (241)
T 3oxn_A 88 LGRVG 92 (241)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 66543
No 64
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=37.20 E-value=1e+02 Score=21.90 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=34.4
Q ss_pred cEEEEEccCCCC-CCcchhHHHHHHHHHHhhC------CCceEEEEcCCCCCChhHHHHHHHHhcce
Q psy15557 53 KTVAFFHPYCNA-GGGGERVLWTAVLALHQKY------PDYKIYIYTGDVDASPSEIIKRAHQRFNI 112 (207)
Q Consensus 53 ~~VgFFHPycna-GGGGERVLW~Ai~alq~~~------~~~~~vIYTgd~~~~~~~il~~a~~rF~i 112 (207)
..|-|+-+.|.. + +..-..++.+++++ ++..++--+.|.+.+..+-+++-.++++.
T Consensus 26 vll~f~~~~C~~~C----~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~ 88 (164)
T 2ggt_A 26 LLIYFGFTHCPDVC----PEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSP 88 (164)
T ss_dssp EEEEEECTTCSSHH----HHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCS
T ss_pred EEEEEEeCCCCchh----HHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 456777777875 5 66667777777665 36677776777544433344444445553
No 65
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=36.99 E-value=84 Score=20.56 Aligned_cols=51 Identities=14% Similarity=0.216 Sum_probs=35.6
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceee
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVL 114 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L 114 (207)
..|-|+-|.|..+ +-+-..++.+.+++++..++-...| .+ .+..++||++-
T Consensus 23 ~~v~f~~~~C~~C----~~~~~~~~~~~~~~~~~~~~~vd~~--~~-----~~~~~~~~v~~ 73 (105)
T 3m9j_A 23 VVVDFSATWCGPC----KMIKPFFHSLSEKYSNVIFLEVDVD--DC-----QDVASESEVKS 73 (105)
T ss_dssp EEEEEECTTCHHH----HHHHHHHHHHHHHSTTSEEEEEETT--TC-----HHHHHHTTCCB
T ss_pred EEEEEECCCChhh----HHHHHHHHHHHHHccCeEEEEEEhh--hh-----HHHHHHcCCCc
Confidence 5677888999777 7777888999999988655544443 22 23456788753
No 66
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=36.75 E-value=98 Score=22.28 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=34.4
Q ss_pred cEEEEEccCCCC-CCcchhHHHHHHHHHHhhC------CCceEEEEcCCCCCChhHHHHHHHHhcc
Q psy15557 53 KTVAFFHPYCNA-GGGGERVLWTAVLALHQKY------PDYKIYIYTGDVDASPSEIIKRAHQRFN 111 (207)
Q Consensus 53 ~~VgFFHPycna-GGGGERVLW~Ai~alq~~~------~~~~~vIYTgd~~~~~~~il~~a~~rF~ 111 (207)
..|-|+-+.|.. + +-....++.+++++ ++..++--+.|.+.+..+-+++..++++
T Consensus 29 vll~F~~~~C~~~C----~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~ 90 (171)
T 2rli_A 29 VLMYFGFTHCPDIC----PDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFH 90 (171)
T ss_dssp EEEEEECTTCSSSH----HHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTC
T ss_pred EEEEEEcCCCCchh----HHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcC
Confidence 456788788875 5 66667788888776 4777777777744333333444444444
No 67
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=36.51 E-value=87 Score=20.87 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=35.6
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceee
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVL 114 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L 114 (207)
..|-|+-|.|... |-+-..++.+.+++++..++-...| .+ .+..++||++-
T Consensus 24 v~v~f~a~wC~~C----~~~~~~~~~~~~~~~~~~~~~vd~~--~~-----~~~~~~~~v~~ 74 (107)
T 1gh2_A 24 AVVKFTMRGCGPC----LRIAPAFSSMSNKYPQAVFLEVDVH--QC-----QGTAATNNISA 74 (107)
T ss_dssp EEEEEECSSCHHH----HHHHHHHHHHHHHCTTSEEEEEETT--TS-----HHHHHHTTCCS
T ss_pred EEEEEECCCChhh----HHHHHHHHHHHHHCCCcEEEEEECc--cC-----HHHHHhcCCCc
Confidence 5677888999877 7777788888888887666655444 22 23456788753
No 68
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=36.47 E-value=42 Score=30.75 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=33.6
Q ss_pred CCCcchhHHHHHHHHHHhhC-CCceEEEEcCC----CCCChhHHHHHHHHhcc
Q psy15557 64 AGGGGERVLWTAVLALHQKY-PDYKIYIYTGD----VDASPSEIIKRAHQRFN 111 (207)
Q Consensus 64 aGGGGERVLW~Ai~alq~~~-~~~~~vIYTgd----~~~~~~~il~~a~~rF~ 111 (207)
..||||.-|-.+|+.+.+++ |+ -++|+|+. .+-|-+.+.+++++..|
T Consensus 68 i~~G~~~kL~~~I~~~~~~~~P~-~I~V~tTC~~e~IGdDi~~v~~~~~~~~g 119 (511)
T 2xdq_B 68 LARGSQEKVVDNIIRKDTEEHPD-LIVLTPTCTSSILQEDLQNFVRRASLSTT 119 (511)
T ss_dssp TTTCSSSHHHHHHHHHHHHHCCS-EEEEECCHHHHTTCCCHHHHHHHHHHHCS
T ss_pred eeCchHHHHHHHHHHHHHhcCCC-EEEEeCCcHHHHhccCHHHHHHHhhhccC
Confidence 44567767779998887665 55 58888765 23478888888887544
No 69
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=36.34 E-value=53 Score=27.95 Aligned_cols=52 Identities=21% Similarity=0.312 Sum_probs=36.1
Q ss_pred EccCCCCCCcchhHH----HHHHHHHHhh-C-CCceEEEEcCCCCCChhHHHHHHHHhcc
Q psy15557 58 FHPYCNAGGGGERVL----WTAVLALHQK-Y-PDYKIYIYTGDVDASPSEIIKRAHQRFN 111 (207)
Q Consensus 58 FHPycnaGGGGERVL----W~Ai~alq~~-~-~~~~~vIYTgd~~~~~~~il~~a~~rF~ 111 (207)
-|||....+|-+.-+ -..+++..++ | |+.-.++.+|| .+++++.+.+++.|+
T Consensus 155 ~~p~~~~~~G~~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd--~d~~~~~~~v~~~f~ 212 (445)
T 3ami_A 155 AHPYRVPVIGWMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGD--VEHEAVFRLAEQTYG 212 (445)
T ss_dssp SSGGGSCTTCCHHHHHHCCHHHHHHHHHHHCSGGGEEEEEEES--CCHHHHHHHHHHTGG
T ss_pred CCCCCCCCCCCHHHHhhCCHHHHHHHHHHhCCccceEEEEEcC--CCHHHHHHHHHHHhc
Confidence 489988765655444 2333333333 3 67777778898 789999999999996
No 70
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=35.62 E-value=63 Score=27.09 Aligned_cols=45 Identities=22% Similarity=0.448 Sum_probs=23.1
Q ss_pred EEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCC------CChhHHHHHHH
Q psy15557 54 TVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVD------ASPSEIIKRAH 107 (207)
Q Consensus 54 ~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~------~~~~~il~~a~ 107 (207)
.||+| +.+.| |= ...+++++..|+..+ +|-||.. .+.+++.+.+.
T Consensus 5 ~Igvf--DSGvG--Gl----tv~~~i~~~lP~~~~-iy~~D~~~~PyG~~s~~~i~~~~~ 55 (272)
T 1zuw_A 5 PIGVI--DSGVG--GL----TVAKEIMRQLPKENI-IYVGDTKRCPYGPRPEEEVLQYTW 55 (272)
T ss_dssp CEEEE--ESSST--TH----HHHHHHHHHSTTCCE-EEEECGGGCCCSSSCHHHHHHHHH
T ss_pred eEEEE--eCCcc--hH----HHHHHHHHhCCCCcE-EEeccCCCCCCCCCCHHHHHHHHH
Confidence 47777 33333 32 335566666665553 3666642 34555554443
No 71
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=35.56 E-value=37 Score=31.17 Aligned_cols=48 Identities=23% Similarity=0.397 Sum_probs=35.9
Q ss_pred CCcchhHHHHHHHHHHhhCCCceEEEEcCCC----CCChhHHHHHHHHhcce
Q psy15557 65 GGGGERVLWTAVLALHQKYPDYKIYIYTGDV----DASPSEIIKRAHQRFNI 112 (207)
Q Consensus 65 GGGGERVLW~Ai~alq~~~~~~~~vIYTgd~----~~~~~~il~~a~~rF~i 112 (207)
.|.||.-|-.+|+.+.++++---++|+|+.. .-|-+.+.+++++++++
T Consensus 103 fG~g~~kL~~~I~~~~~~~~P~~I~V~tTC~~e~IGdDl~~v~~~~~~~~~~ 154 (483)
T 3pdi_A 103 MGRAEKRLFHAIRQAVESYSPPAVFVYNTCVPALIGDDVDAVCKAAAERFGT 154 (483)
T ss_dssp SSHHHHHHHHHHHHHHHHHCCSCEEEECCHHHHHTTCCHHHHHHHHHHHHCS
T ss_pred ccCcHHHHHHHHHHHHHhcCCCEEEEECCchHHHhcCCHHHHHHHHHHHhCC
Confidence 4327777889999998887655677887642 34888999999988764
No 72
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=35.31 E-value=1e+02 Score=20.81 Aligned_cols=53 Identities=11% Similarity=0.216 Sum_probs=36.4
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcce
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNI 112 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i 112 (207)
..+-|+-+.|..+ +-.-..++.+++++++..++..+.| .+++++ ++..+.+++
T Consensus 28 ~ll~f~~~~C~~C----~~~~~~l~~~~~~~~~~~~~~v~~~--~~~~~~-~~~~~~~~~ 80 (136)
T 1zzo_A 28 AVLWFWAPWCPTC----QGEAPVVGQVAASHPEVTFVGVAGL--DQVPAM-QEFVNKYPV 80 (136)
T ss_dssp EEEEEECTTCHHH----HHHHHHHHHHHHHCTTSEEEEEECS--SCHHHH-HHHHHHTTC
T ss_pred EEEEEEcCCChhH----HHHHHHHHHHHHHcCCeEEEEEeCC--CCHHHH-HHHHHHcCC
Confidence 5677888888665 6677888889888887777777765 345544 444455554
No 73
>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14
Probab=34.60 E-value=61 Score=25.34 Aligned_cols=40 Identities=28% Similarity=0.463 Sum_probs=31.5
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeec
Q psy15557 74 TAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLP 115 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~ 115 (207)
.+++.++++ +..+++.|+....+.+++.++.++++|++.+
T Consensus 28 ~~l~~l~~~--g~~~~~~t~~~~~~~~~~~~~l~~~~g~~~~ 67 (264)
T 1yv9_A 28 RFVERLQEK--DLPFLFVTNNTTKSPETVAQRLANEFDIHVP 67 (264)
T ss_dssp HHHHHHHHT--TCCEEEEECCCSSCHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHC--CCeEEEEeCCCCCCHHHHHHHHHHhcCCCCC
Confidence 456666665 7788899998888999999998887887654
No 74
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=33.99 E-value=47 Score=28.24 Aligned_cols=58 Identities=16% Similarity=0.203 Sum_probs=38.6
Q ss_pred CCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeec----CCceEEEEc
Q psy15557 62 CNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLP----EQAINFVYL 124 (207)
Q Consensus 62 cnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~----~~~i~FV~L 124 (207)
.+.||||.-.--.-+.+-.++ +-+++++|-+ -++++++++++ .||++++ +.++.++..
T Consensus 28 g~p~~~~~~l~~qfl~~g~~~--Ge~~~~~~~~--e~~~~l~~~~~-~~G~dl~~~~~~g~l~i~d~ 89 (260)
T 3bs4_A 28 EDASSRGKDILFYILSRKLKS--DNLVGMFSIS--YPLQLIIRILS-RFGVDVIKYLENHRLAIVDT 89 (260)
T ss_dssp CSGGGCHHHHHHHHHHHHHHT--TCEEEEEECS--SCHHHHHHHHH-HTTCCHHHHHHTTSEEEECH
T ss_pred eCCCccHHHHHHHHHHHHHHC--CCcEEEEEEe--CCHHHHHHHHH-HcCCCHHHHhhCCcEEEEEc
Confidence 467778873334444433343 6778888876 58999999995 5898875 335666654
No 75
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=32.96 E-value=57 Score=21.66 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=35.2
Q ss_pred ccEEEEEccCCCCCCcchhHHHHHHHHHHhhCCC-ceEEEEcCCCCCChhHHHHHHHHhcceee
Q psy15557 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPD-YKIYIYTGDVDASPSEIIKRAHQRFNIVL 114 (207)
Q Consensus 52 ~~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~-~~~vIYTgd~~~~~~~il~~a~~rF~i~L 114 (207)
...|-|+.|.|..+ |-+-..++.+.+++++ ..++-...| ..+ ...++||++-
T Consensus 24 ~vlv~f~a~~C~~C----~~~~~~~~~~~~~~~~~v~~~~vd~~--~~~-----~l~~~~~v~~ 76 (111)
T 3gnj_A 24 ACLVMFSRKNCHVC----QKVTPVLEELRLNYEESFGFYYVDVE--EEK-----TLFQRFSLKG 76 (111)
T ss_dssp CEEEEEECSSCHHH----HHHHHHHHHHHHHTTTTSEEEEEETT--TCH-----HHHHHTTCCS
T ss_pred EEEEEEeCCCChhH----HHHHHHHHHHHHHcCCceEEEEEECC--cCh-----hHHHhcCCCc
Confidence 35688999999777 7777888889988885 454444333 222 3456788753
No 76
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=32.70 E-value=63 Score=23.43 Aligned_cols=46 Identities=13% Similarity=0.259 Sum_probs=33.8
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
..||..+.. +...|=.++..++++||++++-+.+++ .+++.+..++
T Consensus 7 l~Ig~~~~~------~~~~l~~~l~~f~~~~P~i~i~l~~~~----~~~l~~~l~~ 52 (209)
T 2ql3_A 7 IAVGCYPAL------GPTILPSMLYAFTAEYPRASVEFREDT----QNRLRTQLEG 52 (209)
T ss_dssp EEEEECGGG------TTTTHHHHHHHHHHHCTTEEEEEEECC----HHHHHHHHHT
T ss_pred EEEeechhh------hhhhHHHHHHHHHHHCCCceEEEEECc----HHHHHHHHHc
Confidence 456654432 346788999999999999999998864 4667776654
No 77
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=32.38 E-value=1e+02 Score=20.91 Aligned_cols=53 Identities=11% Similarity=0.206 Sum_probs=35.1
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcce
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNI 112 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i 112 (207)
..|-|+-+.|..+ +-.-..++.+++++++..++.-+.| .+++++-+ ..+.+++
T Consensus 27 ~lv~f~~~~C~~C----~~~~~~l~~~~~~~~~~~~~~v~~~--~~~~~~~~-~~~~~~~ 79 (136)
T 1lu4_A 27 AVLWFWTPWCPFC----NAEAPSLSQVAAANPAVTFVGIATR--ADVGAMQS-FVSKYNL 79 (136)
T ss_dssp EEEEEECTTCHHH----HHHHHHHHHHHHHCTTSEEEEEECS--SCHHHHHH-HHHHHTC
T ss_pred EEEEEECCcChhH----HHHHHHHHHHHHHCCCcEEEEEEcC--CCHHHHHH-HHHHcCC
Confidence 5677888888655 5566778888888887777766665 34555444 3444454
No 78
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A*
Probab=31.91 E-value=38 Score=29.86 Aligned_cols=36 Identities=17% Similarity=0.445 Sum_probs=26.8
Q ss_pred CceEEEEcCCCCCChhHHH-------HHHHHhcceeecCCceEEEE
Q psy15557 85 DYKIYIYTGDVDASPSEII-------KRAHQRFNIVLPEQAINFVY 123 (207)
Q Consensus 85 ~~~~vIYTgd~~~~~~~il-------~~a~~rF~i~L~~~~i~FV~ 123 (207)
...++|=+|+ ++.++|+ ++|+++|||+|+ ..++++-
T Consensus 286 ha~flvN~g~--Ata~dv~~L~~~v~~~V~~~fgv~Le-~Ev~~ig 328 (340)
T 1uxy_A 286 QALVLINEDN--AKSEDVVQLAHHVRQKVGEKFNVWLE-PEVRFIG 328 (340)
T ss_dssp CTTEEEECSS--CCHHHHHHHHHHHHHHHHHHHSCCCC-BCSEEEE
T ss_pred cCCeEEECCC--CCHHHHHHHHHHHHHHHHHHHCCEeE-EeeEEEC
Confidence 4577777776 6776654 589999999998 5566664
No 79
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=31.22 E-value=1.7e+02 Score=23.65 Aligned_cols=101 Identities=18% Similarity=0.102 Sum_probs=52.4
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEE-cCccceee
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVY-LYRRKFVE 131 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~-Lr~r~lve 131 (207)
.++++.|...+.+ -|...|-.|++.+.+++|+.++++ ++.. + +++.+.+++..+ . .++|+|+- +....+
T Consensus 207 ~vl~~~gr~~~~~-K~~~~li~a~~~l~~~~~~~~~i~--~~g~-~-~~~~~~~~~~~~--~-~~~v~~~g~~~~~~~-- 276 (375)
T 3beo_A 207 LVLMTAHRRENLG-EPMRNMFRAIKRLVDKHEDVQVVY--PVHM-N-PVVRETANDILG--D-YGRIHLIEPLDVIDF-- 276 (375)
T ss_dssp EEEEECCCGGGTT-HHHHHHHHHHHHHHHHCTTEEEEE--ECCS-C-HHHHHHHHHHHT--T-CTTEEEECCCCHHHH--
T ss_pred eEEEEecccccch-hHHHHHHHHHHHHHhhCCCeEEEE--eCCC-C-HHHHHHHHHHhh--c-cCCEEEeCCCCHHHH--
Confidence 3456666544332 345677789888888889988665 3311 2 345555555322 1 14566632 111100
Q ss_pred CCCCCchh-hhhHHHHHHHHHHHHHhcCCCCEEEEC
Q psy15557 132 ASLYPYFT-LLGQSIGSMILGVEALLSFQPDIYIDT 166 (207)
Q Consensus 132 ~~~yp~fT-LLgQslGSi~L~~EAl~~~~PDVfIDT 166 (207)
++.|.... ++.-| |.+ .+||+..-.|=|..|.
T Consensus 277 ~~~~~~ad~~v~~s-g~~--~lEA~a~G~Pvi~~~~ 309 (375)
T 3beo_A 277 HNVAARSYLMLTDS-GGV--QEEAPSLGVPVLVLRD 309 (375)
T ss_dssp HHHHHTCSEEEECC-HHH--HHHHHHHTCCEEECSS
T ss_pred HHHHHhCcEEEECC-CCh--HHHHHhcCCCEEEecC
Confidence 00000000 01112 444 7899999899777765
No 80
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*
Probab=31.17 E-value=1.1e+02 Score=24.89 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=30.3
Q ss_pred CCccEEEEEccCCCCCCcc---hhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 50 NVLKTVAFFHPYCNAGGGG---ERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 50 ~~~~~VgFFHPycnaGGGG---ERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
++-++|+| |--+.|-+| |+..=.|++++.++ ++++++|+.|
T Consensus 121 ~~~~SIAf--PaIstGi~g~P~~~aA~ia~~~v~~~--~v~v~~~~~D 164 (176)
T 3ejf_A 121 DGVVNYVV--PVLSLGIFGVDFKMSIDAMREAFEGC--TIRVLLFSLS 164 (176)
T ss_dssp TTCCEEEE--ECCCTTSTTCCHHHHHHHHHHHHTTC--CCEEEEEESC
T ss_pred cCCcEEEE--CccccCCCCCCHHHHHHHHHHHhhhc--ceEEEEEcCC
Confidence 44578888 776776666 77777777777754 6889999887
No 81
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=31.07 E-value=1.1e+02 Score=22.62 Aligned_cols=68 Identities=7% Similarity=0.119 Sum_probs=43.2
Q ss_pred CccEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH-hcceee-----cCCceEEEEc
Q psy15557 51 VLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ-RFNIVL-----PEQAINFVYL 124 (207)
Q Consensus 51 ~~~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~-rF~i~L-----~~~~i~FV~L 124 (207)
+...||..+.. ++..|=.++..+++++|++++-+.+++ .+++.+..++ +.++-+ +++.+++..|
T Consensus 30 g~l~Ig~~~~~------~~~~l~~~l~~f~~~~P~v~l~~~~~~----~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~~~l 99 (238)
T 2hxr_A 30 GSLRIAVTPTF------TSYFIGPLMADFYARYPSITLQLQEMS----QEKIEDMLCRDELDVGIAFAPVHSPELEAIPL 99 (238)
T ss_dssp -CEEEEECHHH------HTTTHHHHHHHHHHHCTTSCEEEEECC----HHHHHHHHHTTSCSEEEEESSCCCTTEEEEEE
T ss_pred CeEEEeechhh------HHHHHHHHHHHHHHhCCCcEEEEEECC----HHHHHHHHHcCCCcEEEEcCCCCcccceeeee
Confidence 34567765432 456788999999999999999998764 4677776654 233221 1234565555
Q ss_pred Cccc
Q psy15557 125 YRRK 128 (207)
Q Consensus 125 r~r~ 128 (207)
...+
T Consensus 100 ~~~~ 103 (238)
T 2hxr_A 100 LTES 103 (238)
T ss_dssp EEEE
T ss_pred ccCc
Confidence 5533
No 82
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=30.99 E-value=1.1e+02 Score=20.11 Aligned_cols=7 Identities=0% Similarity=0.449 Sum_probs=2.8
Q ss_pred HHHHhhh
Q psy15557 40 YYVSKKR 46 (207)
Q Consensus 40 ~~~~~k~ 46 (207)
.|++++|
T Consensus 33 ~~~RRR~ 39 (44)
T 2jwa_A 33 ILIKRRQ 39 (44)
T ss_dssp HHHHHHC
T ss_pred hheehhh
Confidence 3344444
No 83
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=30.81 E-value=2.3e+02 Score=23.40 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhccee
Q psy15557 69 ERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIV 113 (207)
Q Consensus 69 ERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~ 113 (207)
.-+++..++++++...+ .++|=|++ ++|.+.++ .||++
T Consensus 34 kPli~~~l~~l~~~~i~-~VvVvt~~-----~~i~~~~~-~~g~~ 71 (256)
T 3tqd_A 34 KPMIQHVYESAIKSGAE-EVVIATDD-----KRIRQVAE-DFGAV 71 (256)
T ss_dssp EEHHHHHHHHHHHTTCS-EEEEEESC-----HHHHHHHH-HTTCE
T ss_pred chHHHHHHHHHHhCCCC-EEEEECCH-----HHHHHHHH-HcCCe
Confidence 34889999999886322 44444643 56655554 46643
No 84
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=30.70 E-value=35 Score=32.89 Aligned_cols=52 Identities=17% Similarity=0.409 Sum_probs=38.7
Q ss_pred EccCCCCCCcchhHH----HHHHHHHHhh-C-CCceEEEEcCCCCCChhHHHHHHHHhcc
Q psy15557 58 FHPYCNAGGGGERVL----WTAVLALHQK-Y-PDYKIYIYTGDVDASPSEIIKRAHQRFN 111 (207)
Q Consensus 58 FHPycnaGGGGERVL----W~Ai~alq~~-~-~~~~~vIYTgd~~~~~~~il~~a~~rF~ 111 (207)
-|||.+..||-+..| ...+++-.++ | |++-+++-.|| .|++++++.+++.|+
T Consensus 200 ~~py~~~~~G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd--~d~~~~~~~i~~~f~ 257 (995)
T 2fge_A 200 ENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGD--DDPVHRLRVLSEYLD 257 (995)
T ss_dssp TSGGGSCTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEES--SCHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCChHhhhhcCHHHHHHHHHHhCCccceEEEEEcC--CCHHHHHHHHHHHHh
Confidence 499998876765544 4555565555 3 78877777888 689999999999885
No 85
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=30.54 E-value=1.3e+02 Score=20.36 Aligned_cols=22 Identities=0% Similarity=0.069 Sum_probs=16.9
Q ss_pred HHHHHHHHhhCCCceEEEEcCC
Q psy15557 73 WTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 73 W~Ai~alq~~~~~~~~vIYTgd 94 (207)
+..++.+.+.+|+..+++.|++
T Consensus 67 ~~~~~~l~~~~~~~~ii~~t~~ 88 (130)
T 3eod_A 67 LKLLEHIRNRGDQTPVLVISAT 88 (130)
T ss_dssp HHHHHHHHHTTCCCCEEEEECC
T ss_pred HHHHHHHHhcCCCCCEEEEEcC
Confidence 3556677777888889998887
No 86
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=30.40 E-value=71 Score=27.17 Aligned_cols=51 Identities=10% Similarity=0.195 Sum_probs=35.3
Q ss_pred ccCCCCCCcchhHHH----HHHHHHHhh--CCCceEEEEcCCCCCChhHHHHHHHHhcc
Q psy15557 59 HPYCNAGGGGERVLW----TAVLALHQK--YPDYKIYIYTGDVDASPSEIIKRAHQRFN 111 (207)
Q Consensus 59 HPycnaGGGGERVLW----~Ai~alq~~--~~~~~~vIYTgd~~~~~~~il~~a~~rF~ 111 (207)
|||...-.|-+.-+= ..+++..++ .|++-+++.+|| .+++++.+.+++.|+
T Consensus 161 ~~~~~~~~G~~~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd--~~~~~~~~~i~~~f~ 217 (446)
T 1pp9_A 161 TPLAQSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGG--LEHRQLLDLAQKHFS 217 (446)
T ss_dssp SGGGSCSSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEES--CCHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHhCCHHHHHHHHHhccCCCCEEEEEEcC--CCHHHHHHHHHHHhc
Confidence 899776656554442 223334343 377888888998 568999999999886
No 87
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=30.07 E-value=80 Score=26.70 Aligned_cols=46 Identities=17% Similarity=0.403 Sum_probs=26.7
Q ss_pred EEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCC------CChhHHHHHHHH
Q psy15557 54 TVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVD------ASPSEIIKRAHQ 108 (207)
Q Consensus 54 ~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~------~~~~~il~~a~~ 108 (207)
.||+| ++|=||.-| .+.+.+..|+.. .+|-+|.+ .+.+++.+.+.+
T Consensus 24 ~IGvf----DsG~Ggltv----~~~i~~~~P~~~-~iy~~D~~~~Pyg~~s~~~i~~~~~~ 75 (286)
T 2jfq_A 24 PIGVI----DSGVGGLTV----AKEIMRQLPNET-IYYLGDIGRCPYGPRPGEQVKQYTVE 75 (286)
T ss_dssp CEEEE----ESSSTTHHH----HHHHHHHCTTCC-EEEEECTTTCCCTTSCHHHHHHHHHH
T ss_pred cEEEE----eCCCCcHHH----HHHHHHHCCCcc-EEEeccCCCCCcCCCCHHHHHHHHHH
Confidence 58888 555556655 455556666555 44666642 356666555544
No 88
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=29.50 E-value=22 Score=28.63 Aligned_cols=45 Identities=31% Similarity=0.544 Sum_probs=29.9
Q ss_pred cchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEE
Q psy15557 67 GGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVY 123 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~ 123 (207)
||.+-.|.|+++-.+.. .+|| -.+.+.|++.| ||+++...+.-+|
T Consensus 53 ~Gr~EIW~ALraA~~~~-------e~~D-l~tAQ~IldaA----gItvp~gdL~~cY 97 (137)
T 2ksn_A 53 EGRKEIWDALKAAAHAF-------ESND-HELAQAIIDGA----NITLPHGALTECY 97 (137)
T ss_dssp CCCHHHHHHHHHHHHHH-------HTTC-HHHHHHHHHHH----SCBCSSCCSSEEE
T ss_pred CCCHHHHHHHHHHHHHH-------hcCC-HHHHHHHHHHc----CCcccCCcHHHHH
Confidence 78899999999988532 1456 24666666666 6888755553333
No 89
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=29.11 E-value=1.3e+02 Score=20.69 Aligned_cols=22 Identities=5% Similarity=-0.031 Sum_probs=18.3
Q ss_pred HHHHHHHHhhCCCceEEEEcCC
Q psy15557 73 WTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 73 W~Ai~alq~~~~~~~~vIYTgd 94 (207)
+..++.+++.+|+..+++.|+.
T Consensus 68 ~~~~~~l~~~~~~~~ii~~s~~ 89 (136)
T 3kto_A 68 IELLETLVKRGFHLPTIVMASS 89 (136)
T ss_dssp HHHHHHHHHTTCCCCEEEEESS
T ss_pred HHHHHHHHhCCCCCCEEEEEcC
Confidence 4667788888899999999987
No 90
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=28.83 E-value=97 Score=22.82 Aligned_cols=66 Identities=17% Similarity=0.338 Sum_probs=43.5
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHh-cceee-----cCCceEEEEcCc
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQR-FNIVL-----PEQAINFVYLYR 126 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~r-F~i~L-----~~~~i~FV~Lr~ 126 (207)
..||..+. -+...|=.++..+++++|++++-+.+++ .+++.+..++. .++-+ +++.+++..|..
T Consensus 7 lrIg~~~~------~~~~~l~~~l~~f~~~~P~v~l~l~~~~----~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~~~l~~ 76 (219)
T 1i6a_A 7 LHIGLIPT------VGPYLLPHIIPMLHQTFPKLEMYLHEAQ----THQLLAQLDSGKLDAVILALVKESEAFIEVPLFD 76 (219)
T ss_dssp EEEEECTT------THHHHHHHHHHHHHHHCTTEEEEEEECC----HHHHHHHHHHTSCSEEEEECCGGGTTSEEEEEEE
T ss_pred EEEEeccc------hhhhhhhHHHHHHHHHCCCeEEEEEECC----hHHHHHHHHcCCeeEEEecCCCCCCCcceeeeec
Confidence 45665432 3567888999999999999999998764 57778877653 33321 123456665555
Q ss_pred cc
Q psy15557 127 RK 128 (207)
Q Consensus 127 r~ 128 (207)
.+
T Consensus 77 ~~ 78 (219)
T 1i6a_A 77 EP 78 (219)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 91
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=28.61 E-value=80 Score=28.68 Aligned_cols=45 Identities=9% Similarity=0.166 Sum_probs=32.4
Q ss_pred cchhHHHHHHHHHHhhCCCceEEEEcCCC----CCChhHHHHHHHHhcc
Q psy15557 67 GGERVLWTAVLALHQKYPDYKIYIYTGDV----DASPSEIIKRAHQRFN 111 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~~~vIYTgd~----~~~~~~il~~a~~rF~ 111 (207)
|||.-|-.||+.+.++++---+.|+|+.. +-|-+.+.+++++++.
T Consensus 75 Gg~~~L~~~I~~~~~~~~P~~I~V~tTC~~e~IGdDi~~v~~~~~~~~~ 123 (458)
T 3pdi_B 75 GADENVVEALKTICERQNPSVIGLLTTGLSETQGCDLHTALHEFRTQYE 123 (458)
T ss_dssp CSHHHHHHHHHHHHHHTCCSEEEEEECHHHHTTCTTHHHHHHHTTTSCC
T ss_pred CcHHHHHHHHHHHHHhcCCCEEEEECCcHHHHhcCCHHHHHHHHHHhcc
Confidence 45666779999998887555677887642 3477888888887763
No 92
>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}
Probab=28.43 E-value=81 Score=24.95 Aligned_cols=40 Identities=10% Similarity=0.164 Sum_probs=31.3
Q ss_pred HHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeec
Q psy15557 73 WTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLP 115 (207)
Q Consensus 73 W~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~ 115 (207)
..+++.++++ +.++++-||....+.+++.++.+ ++|++.+
T Consensus 23 ~~~l~~l~~~--g~~~~~~T~r~~~~~~~~~~~l~-~lg~~~~ 62 (263)
T 1zjj_A 23 RELIEFLKER--GIPFAFLTNNSTKTPEMYREKLL-KMGIDVS 62 (263)
T ss_dssp HHHHHHHHHH--TCCEEEEESCCSSCHHHHHHHHH-TTTCCCC
T ss_pred HHHHHHHHHC--CCeEEEEeCCCCCCHHHHHHHHH-HCCCCCC
Confidence 4678888877 78999999987777888888886 6777543
No 93
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=28.02 E-value=84 Score=26.45 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=34.4
Q ss_pred ccCCCCCCcchhHH----HHHHHHHHhh--CCCceEEEEcCCCCCChhHHHHHHHHhcc
Q psy15557 59 HPYCNAGGGGERVL----WTAVLALHQK--YPDYKIYIYTGDVDASPSEIIKRAHQRFN 111 (207)
Q Consensus 59 HPycnaGGGGERVL----W~Ai~alq~~--~~~~~~vIYTgd~~~~~~~il~~a~~rF~ 111 (207)
|||...-+|-+.-+ -..+++..++ .|++-.++.+|| .+++++.+.+++.|+
T Consensus 155 ~~~~~~~~g~~~~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd--~~~~~~~~~i~~~f~ 211 (443)
T 1hr6_B 155 QPLGRTILGPIKNIKSITRTDLKDYITKNYKGDRMVLAGAGA--VDHEKLVQYAQKYFG 211 (443)
T ss_dssp SGGGSCSSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEES--CCHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHhhCCHHHHHHHHHhcCcCCCEEEEEEcC--CCHHHHHHHHHHHhc
Confidence 89877654544433 2334444444 367777788998 578999999999885
No 94
>3ijd_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: C2F; 2.00A {Clostridium thermocellum atcc 27405}
Probab=27.66 E-value=1.5e+02 Score=26.14 Aligned_cols=59 Identities=17% Similarity=0.061 Sum_probs=41.5
Q ss_pred CccEEEEEccCCCCCCcchhHHH----HHHHHHHhhCCCceEEEEcC-CC--------------CCChhHHHHHHHHhcc
Q psy15557 51 VLKTVAFFHPYCNAGGGGERVLW----TAVLALHQKYPDYKIYIYTG-DV--------------DASPSEIIKRAHQRFN 111 (207)
Q Consensus 51 ~~~~VgFFHPycnaGGGGERVLW----~Ai~alq~~~~~~~~vIYTg-d~--------------~~~~~~il~~a~~rF~ 111 (207)
....++||=|--++| |.-|| .+++.+.+-.|+.. ++|-. +- ..++.++.++.++.+|
T Consensus 14 ~~~SfE~fPPk~~~~---~e~l~~~a~~~l~~l~~l~pdf~-v~Yga~g~s~r~~~~rt~~f~~T~d~~~~~~~i~~~~g 89 (315)
T 3ijd_A 14 GIITYGITPPKKNNT---EEKIKEISQKHIERISGLDIDGL-VIYDLQDEKERVSEERPFPFIETIDPQIYSENYLKDLK 89 (315)
T ss_dssp CCEEEEECCCBSSSC---HHHHHHHHHHHHHHHHTSCCSEE-EECCCC-------------CCCBCCHHHHHHHHCTTSC
T ss_pred ceEEEEeeCcCCCcc---HHHHHHHHHHHHHHHHhCCCCEE-EECCCCCCCCCCCCCCCccccccccHHHHHHHHHHHhC
Confidence 346789999988764 88899 57778888899985 67862 21 1344557778888877
Q ss_pred ee
Q psy15557 112 IV 113 (207)
Q Consensus 112 i~ 113 (207)
++
T Consensus 90 i~ 91 (315)
T 3ijd_A 90 IP 91 (315)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 95
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=27.47 E-value=1.1e+02 Score=25.62 Aligned_cols=60 Identities=20% Similarity=0.301 Sum_probs=35.5
Q ss_pred CccEEEEEccCCCCCCcc------hhHHHHHHHHHHhhC-----CCceEEEEcCCCCCChhHHHHHHHHhccee
Q psy15557 51 VLKTVAFFHPYCNAGGGG------ERVLWTAVLALHQKY-----PDYKIYIYTGDVDASPSEIIKRAHQRFNIV 113 (207)
Q Consensus 51 ~~~~VgFFHPycnaGGGG------ERVLW~Ai~alq~~~-----~~~~~vIYTgd~~~~~~~il~~a~~rF~i~ 113 (207)
+-++|+| |--+.|-+| -++...+|+...++. .++.+|+|..| +.+-+...+..++||+..
T Consensus 148 ~i~SIAf--PaIsTG~~G~P~~~aA~i~~~~v~~fl~~~~~~~l~~V~fv~f~~d-~~~~~~f~~~l~~r~~~~ 218 (221)
T 3q71_A 148 SLKSIAF--PAIGTGNLGFPKNIFAELIISEVFKFSSKNQLKTLQEVHFLLHPSD-HENIQAFSDEFARRANGN 218 (221)
T ss_dssp TCCEEEE--ECTTSSTTCCCHHHHHHHHHHHHHHHHHHCCCSSCCEEEEEECTTC-HHHHHHHHHHHHHHHC--
T ss_pred CCceEee--ccccCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEeCCC-HHHHHHHHHHHHHHccCC
Confidence 3468999 777777666 245666666655554 24677777766 122244455567777653
No 96
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=27.42 E-value=1.2e+02 Score=21.64 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q psy15557 25 LLLIIVLPISVLLFKYYVSKKRK 47 (207)
Q Consensus 25 ~~l~~~l~~~~~~~r~~~~~k~~ 47 (207)
++++.++++++|.+...++.||+
T Consensus 21 illiGllllliwk~~~~i~DrrE 43 (79)
T 2knc_B 21 ILLIGLAALLIWKLLITIHDRKE 43 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445544444554543
No 97
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=27.06 E-value=94 Score=23.14 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=35.5
Q ss_pred ccEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 52 ~~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
...||..+. -+...|=.++..++++||++++-+.+++ .+++.+..++
T Consensus 15 ~lrIg~~~~------~~~~~l~~~l~~f~~~~P~v~l~l~~~~----~~~~~~~l~~ 61 (228)
T 2fyi_A 15 VLTIATTHT------QARYSLPEVIKAFRELFPEVRLELIQGT----PQEIATLLQN 61 (228)
T ss_dssp EEEEEECHH------HHHHTHHHHHHHHHHHCTTEEEEEEECC----HHHHHHHHHH
T ss_pred eEEEeeccc------hHHHHHHHHHHHHHHHCCCcEEEEEeCC----HHHHHHHHHc
Confidence 355666432 3567888999999999999999998764 5677777655
No 98
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=27.03 E-value=83 Score=28.31 Aligned_cols=59 Identities=17% Similarity=0.097 Sum_probs=38.7
Q ss_pred cchhHHHHHHHHHHhhCCCceEEEEcCCC----CCChhHHHHHHHHhcceeecCCceEEEEcCccc
Q psy15557 67 GGERVLWTAVLALHQKYPDYKIYIYTGDV----DASPSEIIKRAHQRFNIVLPEQAINFVYLYRRK 128 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~~~vIYTgd~----~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~ 128 (207)
|||.=|=.||+.+.+++.---+.|+|+.. +-|-+.+.+++++++.+ +..+.+|+.+...
T Consensus 79 Gg~~~L~~aI~~~~~~~~P~~I~V~tTC~~e~IGdDi~~v~~~~~~~~~~---~~~~pvi~v~tpg 141 (458)
T 1mio_B 79 GGGSNIKTAVKNIFSLYNPDIIAVHTTCLSETLGDDLPTYISQMEDAGSI---PEGKLVIHTNTPS 141 (458)
T ss_dssp CSHHHHHHHHHHHHHHTCCSEEEEEECHHHHHHTCCHHHHHHHHHHTTCS---CTTCEEEEECCCT
T ss_pred CcHHHHHHHHHHHHHhcCCCEEEEECCcHHHHHhcCHHHHHHHHHHhcCC---CCCCeEEEEECCC
Confidence 45555679999988776444577787642 34788889999987642 1335556655533
No 99
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=26.77 E-value=1.1e+02 Score=25.66 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=30.3
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCC------CChhHHHHHHHHh
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVD------ASPSEIIKRAHQR 109 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~------~~~~~il~~a~~r 109 (207)
+.||+| ++|=||=- ..+++.+..|+.. .+|-||.+ .+.+++.+.+.+.
T Consensus 8 ~~Igvf----DSGvGGlt----v~~~i~~~lP~~~-~iy~~D~~~~PyG~~s~~~i~~~~~~~ 61 (276)
T 2dwu_A 8 SVIGVL----DSGVGGLT----VASEIIRQLPKES-ICYIGDNERCPYGPRSVEEVQSFVFEM 61 (276)
T ss_dssp CEEEEE----ESSSTTHH----HHHHHHHHCTTSC-EEEEECGGGCCCTTSCHHHHHHHHHHH
T ss_pred CeEEEE----eCCcchHH----HHHHHHHhCCCCc-EEEccCCCCCCCCCCCHHHHHHHHHHH
Confidence 369999 34434433 3467777788777 67877742 4677776666543
No 100
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=26.74 E-value=60 Score=30.31 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=33.5
Q ss_pred cchhHHHHHHHHHHhhCCCceEEEEcCCC----CCChhHHHHHHHHhcc
Q psy15557 67 GGERVLWTAVLALHQKYPDYKIYIYTGDV----DASPSEIIKRAHQRFN 111 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~~~vIYTgd~----~~~~~~il~~a~~rF~ 111 (207)
|||+-|=.||+.+.++++---++|+|+.. +-|-+.+.++++++++
T Consensus 117 Gg~~kL~~aI~~~~~~~~P~~I~V~tTC~~eiIGdDi~~v~~~~~~~~~ 165 (533)
T 1mio_A 117 GGVNKLKDAIHEAYEMFHPAAIGVYATCPVGLIGDDILAVAATASKEIG 165 (533)
T ss_dssp TTHHHHHHHHHHHHHHTCCSEEEECCCHHHHHHTCCHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHhcCCHHHHHHHHHHhhC
Confidence 45777789999998886545688887652 3477888899988764
No 101
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=26.63 E-value=98 Score=23.21 Aligned_cols=47 Identities=11% Similarity=0.020 Sum_probs=35.3
Q ss_pred ccEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 52 ~~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
...||..+.. +...|-.++..+++++|++++-+.+++ .+++.+..++
T Consensus 28 ~l~Ig~~~~~------~~~~l~~~l~~f~~~~P~i~l~i~~~~----~~~~~~~L~~ 74 (238)
T 3onm_A 28 SLIIGASDDT------ADTLLPFLLNRVATLYPRLAIDVRVKR----SPFIADMLSS 74 (238)
T ss_dssp CEEEEECHHH------HTTHHHHHHHHHHHHCTTCCEEEEECC----HHHHHHHHHH
T ss_pred eEEEeccchh------hHHHHHHHHHHHHHHCCCcEEEEEECC----HHHHHHHHHC
Confidence 3567765443 236888999999999999999998865 4667777665
No 102
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=26.57 E-value=1.5e+02 Score=20.14 Aligned_cols=21 Identities=0% Similarity=-0.118 Sum_probs=15.1
Q ss_pred HHHHHHHhhCCCceEEEEcCC
Q psy15557 74 TAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd 94 (207)
..++.+++.+|+..+++.|++
T Consensus 68 ~~~~~l~~~~~~~~ii~~s~~ 88 (137)
T 3hdg_A 68 EMLDRIKAGGAKPYVIVISAF 88 (137)
T ss_dssp HHHHHHHHTTCCCEEEECCCC
T ss_pred HHHHHHHhcCCCCcEEEEecC
Confidence 455666677778888888876
No 103
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=26.53 E-value=1.6e+02 Score=20.21 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=17.2
Q ss_pred HHHHHHHHhhCCCceEEEEcCC
Q psy15557 73 WTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 73 W~Ai~alq~~~~~~~~vIYTgd 94 (207)
...++.+.+.+|+..+++.|++
T Consensus 65 ~~~~~~l~~~~~~~~ii~ls~~ 86 (143)
T 3jte_A 65 MDILREIKKITPHMAVIILTGH 86 (143)
T ss_dssp HHHHHHHHHHCTTCEEEEEECT
T ss_pred HHHHHHHHHhCCCCeEEEEECC
Confidence 3556777777889999999987
No 104
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=26.48 E-value=72 Score=20.85 Aligned_cols=51 Identities=16% Similarity=0.365 Sum_probs=33.6
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCC-ceEEEEcCCCCCChhHHHHHHHHhcceee
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPD-YKIYIYTGDVDASPSEIIKRAHQRFNIVL 114 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~-~~~vIYTgd~~~~~~~il~~a~~rF~i~L 114 (207)
..|-|+.|.|..+ +-+-..++.+.+++++ ..++....| .++ +..++||++=
T Consensus 22 ~lv~f~~~~C~~C----~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~-----~~~~~~~v~~ 73 (106)
T 3die_A 22 QLVDFWATACGPC----KMIAPVLEELAADYEGKADILKLDVD--ENP-----STAAKYEVMS 73 (106)
T ss_dssp EEEEEECSBCHHH----HHHHHHHHHHHHHTTTTCEEEEEETT--TCH-----HHHHHTTCCS
T ss_pred EEEEEECCCCHHH----HHHhHHHHHHHHHhcCCcEEEEEECC--cCH-----HHHHhCCCcc
Confidence 5677999999777 7777778888888876 444433333 332 3456787753
No 105
>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*
Probab=26.42 E-value=77 Score=29.11 Aligned_cols=24 Identities=4% Similarity=0.004 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 71 VLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 71 VLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
|+...++.+.+.-||+.++.||.-
T Consensus 138 v~~~i~~~i~~~~P~A~~in~tNP 161 (477)
T 3u95_A 138 LALEIAEKMKKMAPKAYLMQTANP 161 (477)
T ss_dssp HHHHHHHHHHHHCTTCEEEECSSC
T ss_pred HHHHHHHHHHhhCCCeEEEEecCh
Confidence 789999999999999999999954
No 106
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=26.32 E-value=1.4e+02 Score=19.37 Aligned_cols=51 Identities=22% Similarity=0.380 Sum_probs=34.6
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceee
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVL 114 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L 114 (207)
..|-|+-|.|... +-+-..++.+.+++++..++-...| ..+ +..++|++.-
T Consensus 22 ~~v~f~~~~C~~C----~~~~~~l~~~~~~~~~~~~~~v~~~--~~~-----~~~~~~~v~~ 72 (104)
T 2vim_A 22 IVVDFFAQWCGPC----RNIAPKVEALAKEIPEVEFAKVDVD--QNE-----EAAAKYSVTA 72 (104)
T ss_dssp EEEEEECTTCHHH----HHHHHHHHHHHHHCTTSEEEEEETT--TCH-----HHHHHTTCCS
T ss_pred EEEEEECCCCHHH----HHhhHHHHHHHHHCCCCEEEEEecc--CCH-----HHHHHcCCcc
Confidence 5677888998777 6666778888888887666655544 222 3446777753
No 107
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=26.29 E-value=1.6e+02 Score=20.55 Aligned_cols=22 Identities=5% Similarity=0.018 Sum_probs=17.2
Q ss_pred HHHHHHHHhhCCCceEEEEcCC
Q psy15557 73 WTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 73 W~Ai~alq~~~~~~~~vIYTgd 94 (207)
...++.+++.+|+..+++.|++
T Consensus 77 ~~~~~~l~~~~~~~~ii~~s~~ 98 (152)
T 3eul_A 77 AQVAAAVRSYELPTRVLLISAH 98 (152)
T ss_dssp HHHHHHHHHTTCSCEEEEEESC
T ss_pred HHHHHHHHhcCCCCeEEEEEcc
Confidence 3566777777888899999887
No 108
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=26.08 E-value=60 Score=21.29 Aligned_cols=52 Identities=13% Similarity=0.395 Sum_probs=32.7
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceee
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVL 114 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L 114 (207)
..|-|+-|.|... +-+...++.+.+++++ ++.++.-|.+.++ +..++||+.-
T Consensus 23 ~lv~f~~~~C~~C----~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~-----~~~~~~~v~~ 74 (107)
T 2i4a_A 23 VLVDFWAEWCGPC----KMIGPALGEIGKEFAG-KVTVAKVNIDDNP-----ETPNAYQVRS 74 (107)
T ss_dssp EEEEEECTTCHHH----HHHHHHHHHHHHHHTT-SEEEEEEETTTCC-----HHHHHTTCCS
T ss_pred EEEEEECCCChhH----HHHhHHHHHHHHHhCC-cEEEEEEECCCCH-----HHHHhcCCCc
Confidence 5677888999777 7777778888888764 2334333333232 3446677653
No 109
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=25.67 E-value=53 Score=25.35 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=17.3
Q ss_pred ccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 59 HPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 59 HPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
||.-.+||++|+= --+.-+...+..++++ -|+.++-++.++++...
T Consensus 4 ~~~~~~~~~~~~~---q~~~~~~~~~~~ki~v-vG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 4 HHHHSSGRENLYF---QGRAPQPVVARCKLVL-VGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp --------------------------CEEEEE-ECSTTSSHHHHHHHHHH
T ss_pred cccccchhhhhHh---hccCCCCccceEEEEE-ECcCCCCHHHHHHHHhc
Confidence 7888888888852 1111122223455554 78889999999988654
No 110
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=25.64 E-value=1e+02 Score=29.20 Aligned_cols=52 Identities=23% Similarity=0.295 Sum_probs=38.9
Q ss_pred EccCCCCCCcchhHHH--------HHHHHHHhh--CCCceEEEEcCCCCCChhHHHHHHHHhcc
Q psy15557 58 FHPYCNAGGGGERVLW--------TAVLALHQK--YPDYKIYIYTGDVDASPSEIIKRAHQRFN 111 (207)
Q Consensus 58 FHPycnaGGGGERVLW--------~Ai~alq~~--~~~~~~vIYTgd~~~~~~~il~~a~~rF~ 111 (207)
-|||....+|-+..|= ..+++..++ .|++-+++-.|| .|++++.+.+++.|+
T Consensus 169 ~~p~~~~~~G~~~~l~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~--~~~~~l~~~v~~~f~ 230 (939)
T 1q2l_A 169 AHPGSKFSGGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSN--KPLPELAKMAADTFG 230 (939)
T ss_dssp TSGGGSCCSCCHHHHSCBTTBCHHHHHHHHHHHHCCTTTCEEEEEES--SCHHHHHHHHHHTGG
T ss_pred CCCCccCCCCCHHHHhcCCCchHHHHHHHHHHhccCHhheEEEEEcC--CCHHHHHHHHHHHhh
Confidence 4999988877766553 344555444 377777777898 688999999999996
No 111
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=25.61 E-value=1.8e+02 Score=20.44 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=16.9
Q ss_pred HHHHHHHHhhCCCceEEEEcCC
Q psy15557 73 WTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 73 W~Ai~alq~~~~~~~~vIYTgd 94 (207)
+..++.+++.+|+..+++.|++
T Consensus 74 ~~~~~~l~~~~~~~~ii~~s~~ 95 (153)
T 3hv2_A 74 PTLLARIHQQYPSTTRILLTGD 95 (153)
T ss_dssp HHHHHHHHHHCTTSEEEEECCC
T ss_pred HHHHHHHHhHCCCCeEEEEECC
Confidence 3556667778888999998886
No 112
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=25.49 E-value=1.7e+02 Score=20.50 Aligned_cols=22 Identities=9% Similarity=0.003 Sum_probs=17.1
Q ss_pred HHHHHHHHhhCCCceEEEEcCC
Q psy15557 73 WTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 73 W~Ai~alq~~~~~~~~vIYTgd 94 (207)
+..++.+++.+|+..+++.|++
T Consensus 82 ~~~~~~l~~~~~~~~ii~ls~~ 103 (150)
T 4e7p_A 82 LEVLEWIRSEKLETKVVVVTTF 103 (150)
T ss_dssp HHHHHHHHHTTCSCEEEEEESC
T ss_pred HHHHHHHHHhCCCCeEEEEeCC
Confidence 3556777777888899998886
No 113
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=25.47 E-value=2.1e+02 Score=23.44 Aligned_cols=53 Identities=23% Similarity=0.417 Sum_probs=32.8
Q ss_pred CccEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEE-EcCCCCCChhHHHHHHHHhc
Q psy15557 51 VLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYI-YTGDVDASPSEIIKRAHQRF 110 (207)
Q Consensus 51 ~~~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vI-YTgd~~~~~~~il~~a~~rF 110 (207)
...||.|.|.. +|..+..+=..|++-.+++|++++.. +.+ +-++.+++....+
T Consensus 4 ~~TTItfW~~~---~g~~~~~~~~~i~~F~~~~p~i~V~~~~~~----~~~~~~~~~~aa~ 57 (419)
T 4aq4_A 4 MVTTIPFWHSM---EGELGKEVDSLAQRFNAENPDYKIVPTYKG----NYEQNLSAGIAAF 57 (419)
T ss_dssp SCEEEEEEECC---CTHHHHHHHHHHHHHHHHCTTEEEEEEECS----SHHHHHHHHHHHH
T ss_pred CCEEEEEcCCC---CchHHHHHHHHHHHHHHHCcCeEEEEEeCC----CHHHHHHHHHHHH
Confidence 34689999954 33334455455677778899998864 333 3456666655443
No 114
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes}
Probab=25.46 E-value=47 Score=29.03 Aligned_cols=35 Identities=11% Similarity=0.412 Sum_probs=24.8
Q ss_pred CceEEEEcCCCCCChhH-------HHHHHHHhcceeecCCceEEE
Q psy15557 85 DYKIYIYTGDVDASPSE-------IIKRAHQRFNIVLPEQAINFV 122 (207)
Q Consensus 85 ~~~~vIYTgd~~~~~~~-------il~~a~~rF~i~L~~~~i~FV 122 (207)
...++|=+|+ ++.++ +-++|+++|||+|+ ..++++
T Consensus 277 ha~fivN~g~--Ata~dv~~L~~~v~~~V~~~fgv~Le-~Ev~~~ 318 (322)
T 3tx1_A 277 HAGFIVNIGG--ATATDYMNLIAYVQQTVREKFDVELE-TEVKII 318 (322)
T ss_dssp CTTCEEECSS--CCHHHHHHHHHHHHHHHHHHHCCCCC-BSSEEE
T ss_pred CCCEEEECCC--CCHHHHHHHHHHHHHHHHHHHCCeee-EeeEEe
Confidence 4567777776 67754 45678899999998 445554
No 115
>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A
Probab=25.22 E-value=1e+02 Score=23.52 Aligned_cols=40 Identities=10% Similarity=0.238 Sum_probs=29.9
Q ss_pred HHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeec
Q psy15557 73 WTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLP 115 (207)
Q Consensus 73 W~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~ 115 (207)
|.|++.++++ +.++++.|+....+.+++.+..+ .+|++.+
T Consensus 29 ~~ai~~l~~~--G~~~~~~t~~~~~~~~~~~~~l~-~~g~~~~ 68 (259)
T 2ho4_A 29 QEALKRLRAT--SVMVRFVTNTTKETKKDLLERLK-KLEFEIS 68 (259)
T ss_dssp HHHHHHHHTS--SCEEEEEECCSSCCHHHHHHHHH-HTTCCCC
T ss_pred HHHHHHHHHC--CCeEEEEeCCCCcCHHHHHHHHH-HcCCCcc
Confidence 6777887776 67888889877778888888876 4666544
No 116
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=24.73 E-value=1.5e+02 Score=25.24 Aligned_cols=48 Identities=27% Similarity=0.318 Sum_probs=32.2
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCC------CCChhHHHHHHHHh
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDV------DASPSEIIKRAHQR 109 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~------~~~~~~il~~a~~r 109 (207)
..||+| +. |=||= ...+++++..|+..+ +|-||. +-+.++|.+.+.+.
T Consensus 25 ~~Igvf--DS--GvGGL----tv~~~i~~~lP~e~~-iy~~D~a~~PYG~ks~e~i~~~~~~~ 78 (274)
T 3uhf_A 25 MKIGVF--DS--GVGGL----SVLKSLYEARLFDEI-IYYGDTARVPYGVKDKDTIIKFCLEA 78 (274)
T ss_dssp CEEEEE--ES--SSTTH----HHHHHHHHTTCCSEE-EEEECTTTCCCTTSCHHHHHHHHHHH
T ss_pred CeEEEE--EC--CCChH----HHHHHHHHHCCCCCE-EEEecCCCCCCCCCCHHHHHHHHHHH
Confidence 569998 34 44444 445777888887766 577774 35788887777653
No 117
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=24.67 E-value=1.5e+02 Score=20.50 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=17.6
Q ss_pred HHHHHHHHhhCCCceEEEEcCC
Q psy15557 73 WTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 73 W~Ai~alq~~~~~~~~vIYTgd 94 (207)
+..++.+.+.+|+..+++.|++
T Consensus 83 ~~~~~~l~~~~~~~~ii~lt~~ 104 (146)
T 4dad_A 83 LAAIEKLSRLHPGLTCLLVTTD 104 (146)
T ss_dssp HHHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHHHHhCCCCcEEEEeCC
Confidence 4566777778889999999987
No 118
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=24.44 E-value=1.7e+02 Score=20.79 Aligned_cols=22 Identities=5% Similarity=0.033 Sum_probs=17.2
Q ss_pred HHHHHHHHhhCCCceEEEEcCC
Q psy15557 73 WTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 73 W~Ai~alq~~~~~~~~vIYTgd 94 (207)
+..++.+++.+|+..+++.|++
T Consensus 99 ~~~~~~lr~~~~~~~ii~ls~~ 120 (157)
T 3hzh_A 99 ITCLSNIMEFDKNARVIMISAL 120 (157)
T ss_dssp HHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHHHHhhCCCCcEEEEecc
Confidence 3566777777888999999986
No 119
>4dgu_A Putative cell adhesion protein; fimbrial related protein, structural joint center for structural genomics, JCSG; 2.37A {Bacteroides thetaiotaomicron}
Probab=24.41 E-value=24 Score=30.47 Aligned_cols=16 Identities=38% Similarity=0.812 Sum_probs=14.3
Q ss_pred eeEEeeeCcccccccc
Q psy15557 183 KVACYIHYPTITKAQS 198 (207)
Q Consensus 183 ~V~~YvHYPtIStDMl 198 (207)
.|-+|-|||-++-+|-
T Consensus 76 aVTFyAHYP~lT~ea~ 91 (247)
T 4dgu_A 76 TVTFYAHYPALTDEAA 91 (247)
T ss_dssp SEEEEEEESCCCHHHH
T ss_pred eEEEEEechhhcCccc
Confidence 6889999999999874
No 120
>2ygw_A Malonyl-COA decarboxylase, mitochondrial; lyase; 2.80A {Homo sapiens}
Probab=24.38 E-value=35 Score=32.27 Aligned_cols=82 Identities=18% Similarity=0.203 Sum_probs=43.7
Q ss_pred HHHHhhhhccCCccEEEEEccCCCCCCcchhHHH----------HHHHHHHhhCC--------CceEEEE-c------CC
Q psy15557 40 YYVSKKRKSYNVLKTVAFFHPYCNAGGGGERVLW----------TAVLALHQKYP--------DYKIYIY-T------GD 94 (207)
Q Consensus 40 ~~~~~k~~~~~~~~~VgFFHPycnaGGGGERVLW----------~Ai~alq~~~~--------~~~~vIY-T------gd 94 (207)
-|-.-||+...+++-.|||||---. |=+.. .+|+.+....+ +++..|| + |=
T Consensus 193 ~W~DLkrRL~pdRRCfaFFHp~mP~----EPLIfVeVALt~~ia~sIq~iL~~~~~~~~~~~~~~~tAIFYSISntQ~GL 268 (460)
T 2ygw_A 193 NWMDMKRRVGPYRRCYFFSHCSTPG----EPLVVLHVALTGDISSNIQAIVKEHPPSETAAANKITAAIFYSISLTQQGL 268 (460)
T ss_dssp SHHHHHHHTSTTEEEEEEEETTBTT----CCSEEEEEEEESSCCCCSHHHHSCCCCC------CCCEEEEEEEEESCGGG
T ss_pred CHHHHHHhcCCCCeEEEecCCCCCC----CCeEEEeeccccchhhHHHHHhcCCCCcccccccCCCeEEEEeeccccccc
Confidence 3555566655688999999997531 10000 23444443221 2335554 1 21
Q ss_pred CCC-ChhHHHHHHHHhcceeecCCceEEEEcCc
Q psy15557 95 VDA-SPSEIIKRAHQRFNIVLPEQAINFVYLYR 126 (207)
Q Consensus 95 ~~~-~~~~il~~a~~rF~i~L~~~~i~FV~Lr~ 126 (207)
.++ =++-++++|-+.-.-+++ +=-+|+-|..
T Consensus 269 ~GIsfGnfLIKrVV~~L~~E~P-~lktF~TLSP 300 (460)
T 2ygw_A 269 QGVELGTFLIKRVVKELQREFP-HLGVFSSLSP 300 (460)
T ss_dssp TTSCHHHHHHHHHHHHHHHHCT-TCCEEEECBC
T ss_pred ccccchhHHHHHHHHHHHHhCc-CccceeecCC
Confidence 122 256677777766554554 3348888876
No 121
>1gxs_B P-(S)-hydroxymandelonitrIle lyase chain B; inhibitor complex, cyanogenesis mechanism; HET: NAG FUL DKA; 2.3A {Sorghum bicolor} SCOP: c.69.1.5
Probab=24.24 E-value=40 Score=26.15 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=17.3
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCC
Q psy15557 74 TAVLALHQKYPDYKIYIYTGDVDA 97 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd~~~ 97 (207)
..+..|.++ +.++.||+||.|.
T Consensus 57 ~~~~~Ll~~--girVliysGd~D~ 78 (158)
T 1gxs_B 57 PVYRELIQA--GLRVWVYSGDTDS 78 (158)
T ss_dssp HHHHHHHHT--TCEEEEEEETTCS
T ss_pred HHHHHHHHc--CCeEEEEecccCc
Confidence 445666765 8999999999885
No 122
>3v2d_I 50S ribosomal protein L9; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I 2wdl_I 2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I 3huz_I 3i8f_K 3i8i_K 3i9c_K 3i9e_K ...
Probab=24.23 E-value=1e+02 Score=24.35 Aligned_cols=46 Identities=9% Similarity=0.244 Sum_probs=32.9
Q ss_pred HHHHHHhhCCCceEEEE--cCCC----CCChhHHHHHHHHhcceeecCCceE
Q psy15557 75 AVLALHQKYPDYKIYIY--TGDV----DASPSEIIKRAHQRFNIVLPEQAIN 120 (207)
Q Consensus 75 Ai~alq~~~~~~~~vIY--Tgd~----~~~~~~il~~a~~rF~i~L~~~~i~ 120 (207)
..+++.++-.+..+.|. +|+. .+++.+|.+..++++|+++|.+.|+
T Consensus 64 ~A~~~~~~L~~~~v~i~~kag~~kLfGSVt~~dIa~al~~~~g~~idk~~I~ 115 (148)
T 3v2d_I 64 EAERLKEILENLTLTIPVRAGETKIYGSVTAKDIAEALSRQHGVTIDPKRLA 115 (148)
T ss_dssp HHHHHHHHSSSCCEEEECCBSSSSBSSCBCHHHHHHHHTTTTCCCCCTTSSC
T ss_pred HHHHHHHHHcCCEEEEEEEcCCCccccccCHHHHHHHHHHhcCCCcchheEE
Confidence 44555555555555555 6664 4899999999999999999866554
No 123
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=23.86 E-value=1.5e+02 Score=18.96 Aligned_cols=51 Identities=20% Similarity=0.430 Sum_probs=33.8
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceee
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVL 114 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L 114 (207)
..|-|+-|.|... +-+-..++.+++++++..++-...| .++ +..++|++.-
T Consensus 19 ~~v~f~~~~C~~C----~~~~~~~~~~~~~~~~~~~~~v~~~--~~~-----~~~~~~~v~~ 69 (104)
T 2e0q_A 19 AVVDFWAEWCAPC----LILAPIIEELAEDYPQVGFGKLNSD--ENP-----DIAARYGVMS 69 (104)
T ss_dssp EEEEEECTTCHHH----HHHHHHHHHHHHHCTTSEEEEEETT--TCH-----HHHHHTTCCS
T ss_pred EEEEEECCCChhH----HHHhHHHHHHHHHcCCceEEEEECC--CCH-----HHHHhCCccc
Confidence 5677888888777 6666778888888888555444443 222 3456777653
No 124
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=23.73 E-value=1.2e+02 Score=25.03 Aligned_cols=51 Identities=18% Similarity=0.089 Sum_probs=33.5
Q ss_pred EccCCCCCCcchhHH----HHHHHHHHhh-C-CCceEEEEcCCCCCChhHHHHHHHHhcc
Q psy15557 58 FHPYCNAGGGGERVL----WTAVLALHQK-Y-PDYKIYIYTGDVDASPSEIIKRAHQRFN 111 (207)
Q Consensus 58 FHPycnaGGGGERVL----W~Ai~alq~~-~-~~~~~vIYTgd~~~~~~~il~~a~~rF~ 111 (207)
-|||.....|-+.-| -..+++..++ | |+.-.++.+|| .+++++.+.+ +.|+
T Consensus 166 ~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~--~~~~~~~~~~-~~~~ 222 (425)
T 3d3y_A 166 SEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGD--VNEAELVPLF-KQLP 222 (425)
T ss_dssp CTTTTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEES--CCHHHHHHHH-HTSC
T ss_pred CCCccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECC--CCHHHHHHHH-HhCC
Confidence 389876655555444 2334444443 2 56667777898 5789999999 8887
No 125
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=23.67 E-value=83 Score=23.25 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=13.4
Q ss_pred CCCCcchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 63 NAGGGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 63 naGGGGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
+|||||=| ..++.+-+. ++++||+-.
T Consensus 3 ~~~~~~~~---~~v~~~i~~---~~Vvvfsk~ 28 (118)
T 2wem_A 3 GAGGGGSA---EQLDALVKK---DKVVVFLKG 28 (118)
T ss_dssp ------CH---HHHHHHHHH---SSEEEEESB
T ss_pred CCcCccHH---HHHHHHhcc---CCEEEEEec
Confidence 57777766 445555554 789999864
No 126
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=23.46 E-value=1.4e+02 Score=21.37 Aligned_cols=59 Identities=17% Similarity=0.310 Sum_probs=38.0
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCC--ceEEEEcCCC----C-CChhHHHHHHHHhcceeec
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPD--YKIYIYTGDV----D-ASPSEIIKRAHQRFNIVLP 115 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~--~~~vIYTgd~----~-~~~~~il~~a~~rF~i~L~ 115 (207)
..|-|+-+.|..+ +-....++.+++++++ ..++--+.|. + -+++++.+-++++++++.+
T Consensus 35 vll~f~a~~C~~C----~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (170)
T 2p5q_A 35 LLIVNVASKCGMT----NSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFP 100 (170)
T ss_dssp EEEEEECSSSTTH----HHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSC
T ss_pred EEEEEEeccCCcc----HHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCce
Confidence 4577887888765 6666788888887654 5555555542 1 2566666666657776654
No 127
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=23.18 E-value=2.4e+02 Score=25.39 Aligned_cols=85 Identities=11% Similarity=0.260 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhCCCceEEEEcCCCCCC--hhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhHHHHHH
Q psy15557 71 VLWTAVLALHQKYPDYKIYIYTGDVDAS--PSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSM 148 (207)
Q Consensus 71 VLW~Ai~alq~~~~~~~~vIYTgd~~~~--~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslGSi 148 (207)
.|-.+++++.+.+|+++++|+..+.+.. -+..++..++ -++++| .+--+.||... ..+..+
T Consensus 182 ll~ag~~aVR~v~p~~~V~ih~~~~~~~~~~~~~~d~l~~-~g~d~D-------------vIG~syYp~W~---~~l~~l 244 (399)
T 1ur4_A 182 LFNAGSQAVRETDSNILVALHFTNPETSGRYAWIAETLHR-HHVDYD-------------VFASSYYPFWH---GTLKNL 244 (399)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEECCTTSTTHHHHHHHHHHH-TTCCCS-------------EEEEEECTTTS---CCHHHH
T ss_pred HHHHHHHHHHHhCCCCeEEEEeCCCcchHHHHHHHHHHHH-cCCCcC-------------eEeEecCccch---hhHHHH
Confidence 4778889999999999999987653221 1123455443 234444 44555677543 124444
Q ss_pred HHHHHHH-hcCCCCEEEECCCccch
Q psy15557 149 ILGVEAL-LSFQPDIYIDTMGYAFT 172 (207)
Q Consensus 149 ~L~~EAl-~~~~PDVfIDTmGyaFt 172 (207)
.-.++.+ .++.=+|+|-=+||+++
T Consensus 245 ~~~l~~l~~rygKpV~v~EtG~~~~ 269 (399)
T 1ur4_A 245 TSVLTSVADTYGKKVMVAETSYTYT 269 (399)
T ss_dssp HHHHHHHHHHHCCEEEEEEECCCSC
T ss_pred HHHHHHHHHHhCCcEEEEEecCCcc
Confidence 3444554 24445688888899985
No 128
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=23.00 E-value=1.9e+02 Score=19.80 Aligned_cols=57 Identities=16% Similarity=0.262 Sum_probs=35.7
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCC-ceEEEEcCCCC---CChhHHHHHHHHhcceee
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPD-YKIYIYTGDVD---ASPSEIIKRAHQRFNIVL 114 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~-~~~vIYTgd~~---~~~~~il~~a~~rF~i~L 114 (207)
..|-|+-+.|..+ +-.-..++.+++++++ ..++.-+.|.+ .+++++.+- .+.++++.
T Consensus 32 ~lv~f~~~~C~~C----~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~ 92 (148)
T 2b5x_A 32 TLIHFWSISCHLC----KEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKET-AAEHDITQ 92 (148)
T ss_dssp EEEEEECTTCHHH----HHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHH-HHHTTCCS
T ss_pred EEEEEEcCCCHHH----HHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHH-HHHcCCCc
Confidence 5678898999665 6666778888888766 66655554421 245554444 44455543
No 129
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=22.80 E-value=1.3e+02 Score=24.89 Aligned_cols=51 Identities=10% Similarity=0.188 Sum_probs=34.2
Q ss_pred ccCCCCCCcchhHH----HHHHHHHHhh-C-CCceEEEEcCCCCCChhHHHHHHHHhcc
Q psy15557 59 HPYCNAGGGGERVL----WTAVLALHQK-Y-PDYKIYIYTGDVDASPSEIIKRAHQRFN 111 (207)
Q Consensus 59 HPycnaGGGGERVL----W~Ai~alq~~-~-~~~~~vIYTgd~~~~~~~il~~a~~rF~ 111 (207)
|||...-.|-+.-| -..+++..++ | |+.-.++.+|| .+++++.+.+++.|+
T Consensus 146 ~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~--~~~~~~~~~~~~~~~ 202 (431)
T 3cx5_A 146 TPLSLPTRGTLESLENLVVADLESFANNHFLNSNAVVVGTGN--IKHEDLVNSIESKNL 202 (431)
T ss_dssp SGGGSCTTCCHHHHHTCCHHHHHHHHHHHSCGGGEEEEEEES--CCHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCHHHHhhCCHHHHHHHHHhcCCCCcEEEEEEcC--CCHHHHHHHHHHHhC
Confidence 88876554544443 3444555444 3 77777888998 678999999987564
No 130
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=22.78 E-value=1.6e+02 Score=19.61 Aligned_cols=51 Identities=18% Similarity=0.311 Sum_probs=35.2
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceee
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVL 114 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L 114 (207)
..|-|+-|.|... +-+-..++.+.+++++..++....| .. .+..++|+++-
T Consensus 31 ~vv~f~~~~C~~C----~~~~~~l~~~~~~~~~~~~~~v~~~--~~-----~~~~~~~~v~~ 81 (118)
T 2vm1_A 31 VIIDFTASWCGPC----RVIAPVFAEYAKKFPGAIFLKVDVD--EL-----KDVAEAYNVEA 81 (118)
T ss_dssp EEEEEECTTCHHH----HHHHHHHHHHHHHCTTSEEEEEETT--TS-----HHHHHHTTCCS
T ss_pred EEEEEECCCCHhH----HHHhHHHHHHHHHCCCcEEEEEEcc--cC-----HHHHHHcCCCc
Confidence 5777889999777 7777788888888887766554444 22 23456787753
No 131
>3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum}
Probab=22.77 E-value=2e+02 Score=20.66 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=16.6
Q ss_pred chhhhhHHHHHHHHHHHHHhcCCCC
Q psy15557 137 YFTLLGQSIGSMILGVEALLSFQPD 161 (207)
Q Consensus 137 ~fTLLgQslGSi~L~~EAl~~~~PD 161 (207)
++.++|.|.|+.+ ++++..+..||
T Consensus 85 ~~~l~G~S~Gg~~-a~~~a~~~~p~ 108 (245)
T 3e0x_A 85 NITLIGYSMGGAI-VLGVALKKLPN 108 (245)
T ss_dssp CEEEEEETHHHHH-HHHHHTTTCTT
T ss_pred ceEEEEeChhHHH-HHHHHHHhCcc
Confidence 6789999999984 55555542355
No 132
>1whs_B Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1wht_B* 1bcs_B* 1bcr_B* 3sc2_B*
Probab=22.67 E-value=45 Score=25.72 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=16.8
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCC
Q psy15557 74 TAVLALHQKYPDYKIYIYTGDVDA 97 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd~~~ 97 (207)
..+..|.++ +.++.||.||.|.
T Consensus 55 ~~~~~Ll~~--girvlIy~Gd~D~ 76 (153)
T 1whs_B 55 PIYRELIAA--GLRIWVFSGDTDA 76 (153)
T ss_dssp HHHHHHHHT--TCEEEEEEETTCS
T ss_pred HHHHHHHhc--CceEEEEecCcCc
Confidence 445566664 7999999999875
No 133
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=22.61 E-value=1.5e+02 Score=23.01 Aligned_cols=36 Identities=11% Similarity=0.120 Sum_probs=22.9
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
|+-++...++++++...-.+++|=|++ +++.+.+++
T Consensus 26 g~pli~~~i~~~~~~~~~~~ivvv~~~-----~~i~~~~~~ 61 (245)
T 1h7e_A 26 GKPMIQHVYERALQVAGVAEVWVATDD-----PRVEQAVQA 61 (245)
T ss_dssp TEEHHHHHHHHHHTCTTCCEEEEEESC-----HHHHHHHHH
T ss_pred CchHHHHHHHHHHhCCCCCeEEEECCc-----HHHHHHHHH
Confidence 456899999999876321356666654 555555543
No 134
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=22.56 E-value=2.1e+02 Score=21.08 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=17.6
Q ss_pred HHHHHHHHhhCCCceEEEEcCC
Q psy15557 73 WTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 73 W~Ai~alq~~~~~~~~vIYTgd 94 (207)
+..++.+.+.+|+..+++.|++
T Consensus 67 ~~~~~~l~~~~~~~~ii~lt~~ 88 (184)
T 3rqi_A 67 LSLIAPLCDLQPDARILVLTGY 88 (184)
T ss_dssp HHHHHHHHHHCTTCEEEEEESS
T ss_pred HHHHHHHHhcCCCCCEEEEeCC
Confidence 3556677778899999999987
No 135
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=22.37 E-value=1.3e+02 Score=23.75 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=29.8
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeec
Q psy15557 74 TAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLP 115 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~ 115 (207)
.|++.++++ ++++++=|+....+.+++.++.+ ..|++..
T Consensus 28 eal~~l~~~--G~~vvl~Tn~~gr~~~~~~~~l~-~lg~~~~ 66 (264)
T 3epr_A 28 RFIERLQEK--GIPYMLVTNNTTRTPESVQEMLR-GFNVETP 66 (264)
T ss_dssp HHHHHHHHH--TCCEEEEECCCSSCHHHHHHHHH-TTTCCCC
T ss_pred HHHHHHHHC--CCeEEEEeCCCCCCHHHHHHHHH-HCCCCCC
Confidence 677777777 89999999877778888888886 4565543
No 136
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=22.18 E-value=77 Score=23.79 Aligned_cols=39 Identities=26% Similarity=0.262 Sum_probs=30.6
Q ss_pred CccEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCC
Q psy15557 51 VLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDV 95 (207)
Q Consensus 51 ~~~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~ 95 (207)
+..+||..+ +=|+..|-..+.+.+++||++++-+.+++.
T Consensus 19 G~lrI~~~~------~~~~~~L~~~l~~f~~~~P~i~l~l~~~~~ 57 (218)
T 2qsx_A 19 ELLVVDVTP------SFASLWLVPNINDFHQRHPNIRVKILTGDG 57 (218)
T ss_dssp CEEEEEECH------HHHHHTHHHHHHHHHHHCTTCEEEEEECCS
T ss_pred CcEEEecCH------HHHHHHHHHHHHHHHHHCCCeEEEEEecCC
Confidence 335566533 136789999999999999999999999874
No 137
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=22.18 E-value=1.9e+02 Score=19.70 Aligned_cols=22 Identities=14% Similarity=0.412 Sum_probs=17.8
Q ss_pred HHHHHHHHhhCCCceEEEEcCC
Q psy15557 73 WTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 73 W~Ai~alq~~~~~~~~vIYTgd 94 (207)
+..++.+++.+|+..+++.|++
T Consensus 63 ~~~~~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 63 LNLIRRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp HHHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHHHHHCCCCCEEEEECC
Confidence 3567777788889999999987
No 138
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=22.09 E-value=1.9e+02 Score=19.68 Aligned_cols=52 Identities=12% Similarity=0.238 Sum_probs=35.0
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceee
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVL 114 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L 114 (207)
..|-|+-|.|... |-+-..++.+.+++++..++-...| .+.. +..++||++-
T Consensus 40 ~vv~f~a~wC~~C----~~~~~~l~~~~~~~~~~~~~~vd~~--~~~~----~~~~~~~v~~ 91 (124)
T 1faa_A 40 VVLDMFTQWCGPC----KAMAPKYEKLAEEYLDVIFLKLDCN--QENK----TLAKELGIRV 91 (124)
T ss_dssp EEEEEECTTCHHH----HHHHHHHHHHHHHCTTSEEEEEECS--STTH----HHHHHHCCSS
T ss_pred EEEEEECCcCHhH----HHHhHHHHHHHHHCCCCEEEEEecC--cchH----HHHHHcCCCe
Confidence 5677888999877 7777778888888988665554433 1122 3446677753
No 139
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=22.06 E-value=1.6e+02 Score=20.54 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=37.0
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeec
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLP 115 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~ 115 (207)
..|-|+-|.|... +.+-..++.+.++++++.++....| .+ .+..++||+.--
T Consensus 49 vvv~f~a~wC~~C----~~~~~~l~~l~~~~~~v~~~~v~~~--~~-----~~~~~~~~v~~~ 100 (139)
T 3d22_A 49 VLANFSARWCGPS----RQIAPYYIELSENYPSLMFLVIDVD--EL-----SDFSASWEIKAT 100 (139)
T ss_dssp EEEEEECTTCHHH----HHHHHHHHHHHHHCTTSEEEEEETT--TS-----HHHHHHTTCCEE
T ss_pred EEEEEECCCCHHH----HHHHHHHHHHHHHCCCCEEEEEeCc--cc-----HHHHHHcCCCcc
Confidence 5677888989877 7777888889999988776665554 22 235577887543
No 140
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=21.90 E-value=19 Score=35.51 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=0.0
Q ss_pred EccCCCCCCcchhHHHHHHHHHHh
Q psy15557 58 FHPYCNAGGGGERVLWTAVLALHQ 81 (207)
Q Consensus 58 FHPycnaGGGGERVLW~Ai~alq~ 81 (207)
.+.|-.-|||-|..=.. +.+||+
T Consensus 749 i~~y~~Egggeed~~~d-~~~l~~ 771 (880)
T 1q55_A 749 IFYYGEEGGGEEDQDYD-LSQLHR 771 (880)
T ss_dssp ------------------------
T ss_pred eEEecCcCCcccccccC-cccccC
Confidence 34566667665554322 555543
No 141
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=21.88 E-value=1.8e+02 Score=19.16 Aligned_cols=51 Identities=16% Similarity=0.343 Sum_probs=32.8
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCC-ceEEEEcCCCCCChhHHHHHHHHhcceee
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPD-YKIYIYTGDVDASPSEIIKRAHQRFNIVL 114 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~-~~~vIYTgd~~~~~~~il~~a~~rF~i~L 114 (207)
..|-|+-|.|... +-+-..++.+.+++++ ..++-...| .++ +..++|+++-
T Consensus 28 ~lv~f~~~~C~~C----~~~~~~l~~~~~~~~~~v~~~~v~~~--~~~-----~~~~~~~v~~ 79 (115)
T 1thx_A 28 VLVYFWASWCGPC----QLMSPLINLAANTYSDRLKVVKLEID--PNP-----TTVKKYKVEG 79 (115)
T ss_dssp EEEEEECTTCTTH----HHHHHHHHHHHHHTTTTCEEEEEEST--TCH-----HHHHHTTCCS
T ss_pred EEEEEECCCCHHH----HHhHHHHHHHHHHhCCcEEEEEEEcC--CCH-----HHHHHcCCCc
Confidence 5678888999887 6666777888888764 444333333 232 3456788753
No 142
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=21.87 E-value=1.3e+02 Score=20.37 Aligned_cols=21 Identities=14% Similarity=0.110 Sum_probs=14.4
Q ss_pred HHHHHHHhhCCCceEEEEcCC
Q psy15557 74 TAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd 94 (207)
..++.+++++|+..+++.|++
T Consensus 63 ~~~~~l~~~~~~~~ii~~s~~ 83 (134)
T 3f6c_A 63 QVLETLRKRQYSGIIIIVSAK 83 (134)
T ss_dssp HHHHHHHHTTCCSEEEEEECC
T ss_pred HHHHHHHhcCCCCeEEEEeCC
Confidence 455666666777777777775
No 143
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=21.85 E-value=1e+02 Score=21.27 Aligned_cols=53 Identities=11% Similarity=0.111 Sum_probs=30.6
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCC--ceEEEEcCCCCCChhHHHHHHHHhcce
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPD--YKIYIYTGDVDASPSEIIKRAHQRFNI 112 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~--~~~vIYTgd~~~~~~~il~~a~~rF~i 112 (207)
..|-|+-+.|..+ +-.-..++.+++++++ ..++--+.| .+++++ ++..+.+++
T Consensus 34 vll~f~~~~C~~C----~~~~~~l~~l~~~~~~~~~~~v~v~~d--~~~~~~-~~~~~~~~~ 88 (148)
T 3hcz_A 34 TILFFWDSQCGHC----QQETPKLYDWWLKNRAKGIQVYAANIE--RKDEEW-LKFIRSKKI 88 (148)
T ss_dssp EEEEEECGGGCTT----CSHHHHHHHHHHHHGGGTEEEEEEECC--SSSHHH-HHHHHHHTC
T ss_pred EEEEEECCCCccH----HHHHHHHHHHHHHhccCCEEEEEEEec--CCHHHH-HHHHHHcCC
Confidence 4677889999887 4445666777777655 444433444 344444 343344443
No 144
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=21.80 E-value=1.2e+02 Score=21.88 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=24.3
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCCC
Q psy15557 68 GERVLWTAVLALHQKYPDYKIYIYTGDV 95 (207)
Q Consensus 68 GERVLW~Ai~alq~~~~~~~~vIYTgd~ 95 (207)
+..++=..+..+++++|++++-+.+++.
T Consensus 19 ~~~~l~~~l~~f~~~~P~i~i~i~~~~~ 46 (222)
T 4ab5_A 19 CFDWLMPAMGEFRPMWPQVELDIVSGFQ 46 (222)
T ss_dssp THHHHHHHHHHHHHHSTTEEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEecCCH
Confidence 4478889999999999999999998763
No 145
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B*
Probab=21.76 E-value=2.5e+02 Score=23.97 Aligned_cols=52 Identities=10% Similarity=0.170 Sum_probs=35.0
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhc
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRF 110 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF 110 (207)
.+|-|.|.+. |+.++..+=..|++-++++|++++.+-.. +.++..+|.+.++
T Consensus 63 vtit~w~~~~--~~~~~~~~~~~i~~F~~~~p~I~V~~~~~----~~~~~~~kl~~~~ 114 (456)
T 4g68_A 63 ITLTFWNLFT--GEPAKTKVKEIIDQWNKENPNVQIVESVT----ENDAYKTKIKAAI 114 (456)
T ss_dssp CEEEEEECCC--STTHHHHHHHHHHHHHHHCTTSEEEEEEC----CHHHHHHHHHHHH
T ss_pred EEEEEeeCCC--CchHHHHHHHHHHHHHHHCcCeEEEEEEC----CcHHHHHHHHHHH
Confidence 5799999763 33344556677888999999998865332 3355666666554
No 146
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=21.58 E-value=1.6e+02 Score=22.70 Aligned_cols=48 Identities=17% Similarity=0.051 Sum_probs=34.8
Q ss_pred CccEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHH
Q psy15557 51 VLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108 (207)
Q Consensus 51 ~~~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~ 108 (207)
+...||.-+. -+..++-.++..+++++|++++-+.+++ .+++.+..++
T Consensus 91 g~l~Ig~~~~------~~~~~l~~~l~~f~~~~P~i~l~~~~~~----~~~~~~~l~~ 138 (294)
T 1ixc_A 91 GELSVAYFGT------PIYRSLPLLLRAFLTSTPTATVSLTHMT----KDEQVEGLLA 138 (294)
T ss_dssp EEEEEEECSG------GGGTHHHHHHHHHHHHCTTEEEEEEECC----HHHHHHHHHH
T ss_pred ceEEEEEccc------hhHHHHHHHHHHHHHHCCCcEEEEEeCC----HHHHHHHHHC
Confidence 3356665443 2357899999999999999999998864 4566666554
No 147
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=21.51 E-value=1e+02 Score=27.47 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=32.7
Q ss_pred CcchhHHHHHHHHHHhhC-CCceEEEEcCCC----CCChhHHHHHHHHhcce
Q psy15557 66 GGGERVLWTAVLALHQKY-PDYKIYIYTGDV----DASPSEIIKRAHQRFNI 112 (207)
Q Consensus 66 GGGERVLW~Ai~alq~~~-~~~~~vIYTgd~----~~~~~~il~~a~~rF~i 112 (207)
||-|| |=.||+.+.+++ |+ -++|||+.. +-|-+.+.+++++++|+
T Consensus 80 Gg~ek-L~~~i~~~~~~~~P~-~I~v~~TC~~~iIGdDi~~v~~~~~~~~~i 129 (460)
T 2xdq_A 80 NDYEE-LKRLCLEIKRDRNPS-VIVWIGTCTTEIIKMDLEGLAPKLEAEIGI 129 (460)
T ss_dssp CHHHH-HHHHHHHHHHHHCCS-EEEEEECHHHHHTTCCHHHHHHHHHHHHSS
T ss_pred CChHH-HHHHHHHHHHhcCCC-EEEEECCCHHHHHhhCHHHHHHHHhhccCC
Confidence 56666 689999888664 55 688887652 34778888999887754
No 148
>4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A
Probab=21.40 E-value=78 Score=23.28 Aligned_cols=20 Identities=30% Similarity=0.564 Sum_probs=14.3
Q ss_pred chhhhhHHHHHHHHHHHHHhc
Q psy15557 137 YFTLLGQSIGSMILGVEALLS 157 (207)
Q Consensus 137 ~fTLLgQslGSi~L~~EAl~~ 157 (207)
++.++|.|.|+.+ ++++..+
T Consensus 91 ~~~l~GhS~Gg~~-a~~~a~~ 110 (269)
T 4dnp_A 91 CCAYVGHSVSAMI-GILASIR 110 (269)
T ss_dssp SEEEEEETHHHHH-HHHHHHH
T ss_pred eEEEEccCHHHHH-HHHHHHh
Confidence 5789999999995 4444433
No 149
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=21.33 E-value=1.6e+02 Score=19.04 Aligned_cols=53 Identities=23% Similarity=0.485 Sum_probs=32.9
Q ss_pred ccEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceee
Q psy15557 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVL 114 (207)
Q Consensus 52 ~~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L 114 (207)
...+-|+-|.|... +-+-..++.+.+++++. +.++.-|.+.++ +..++|++.-
T Consensus 20 ~~~v~f~~~~C~~C----~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~-----~~~~~~~v~~ 72 (105)
T 1fb6_A 20 PVMVDFWAPWCGPC----KLIAPVIDELAKEYSGK-IAVYKLNTDEAP-----GIATQYNIRS 72 (105)
T ss_dssp CEEEEEECTTCHHH----HHHHHHHHHHHHHTTTT-CEEEEEETTTCH-----HHHHHTTCCS
T ss_pred cEEEEEECCCChHH----HHHHHHHHHHHHHhcCc-eEEEEEcCcchH-----HHHHhCCCCc
Confidence 35678999999777 66777778888887653 333333322222 3456777753
No 150
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae}
Probab=21.26 E-value=76 Score=28.28 Aligned_cols=36 Identities=25% Similarity=0.464 Sum_probs=25.9
Q ss_pred CceEEEEcCCCCCChhHH-------HHHHHHhcceeecCCceEEEE
Q psy15557 85 DYKIYIYTGDVDASPSEI-------IKRAHQRFNIVLPEQAINFVY 123 (207)
Q Consensus 85 ~~~~vIYTgd~~~~~~~i-------l~~a~~rF~i~L~~~~i~FV~ 123 (207)
...++|=+|+ ++.++| -++|+++|||+|+ ..++++-
T Consensus 300 ha~flvN~g~--Ata~Di~~L~~~v~~~V~~~fgv~Le-~Ev~~ig 342 (357)
T 3i99_A 300 QALVIVNTGD--ASAQDVLMLAADIQQRVFNCYGIELE-HEVRFIG 342 (357)
T ss_dssp STTEEEECSS--CCHHHHHHHHHHHHHHHHHHHSCCCC-BCSEEEC
T ss_pred CCCEEEECCC--CCHHHHHHHHHHHHHHHHHHHCceee-EeeEEEC
Confidence 4567777776 677554 5678899999998 5566664
No 151
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=21.14 E-value=1.7e+02 Score=20.41 Aligned_cols=52 Identities=27% Similarity=0.550 Sum_probs=33.9
Q ss_pred ccEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhccee
Q psy15557 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIV 113 (207)
Q Consensus 52 ~~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~ 113 (207)
...|-|+-|.|..+ |-+--.++.+.+++++. +.++.-|.+.++ +..++||+.
T Consensus 53 ~vlv~f~a~wC~~C----~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~-----~~~~~~~v~ 104 (141)
T 3hxs_A 53 PAIVDFYADWCGPC----KMVAPILEELSKEYAGK-IYIYKVNVDKEP-----ELARDFGIQ 104 (141)
T ss_dssp CEEEEEECTTCTTH----HHHHHHHHHHHHHTTTT-CEEEEEETTTCH-----HHHHHTTCC
T ss_pred EEEEEEECCCCHHH----HHHHHHHHHHHHHhcCc-eEEEEEECCCCH-----HHHHHcCCC
Confidence 35677899999888 77777788888888753 333333433332 345778875
No 152
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=21.06 E-value=1.9e+02 Score=19.30 Aligned_cols=21 Identities=14% Similarity=0.082 Sum_probs=15.7
Q ss_pred HHHHHHHhhCCCceEEEEcCC
Q psy15557 74 TAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd 94 (207)
..++.+++..|+..+++.|++
T Consensus 64 ~~~~~l~~~~~~~~ii~~s~~ 84 (126)
T 1dbw_A 64 ELLRNLGDLKINIPSIVITGH 84 (126)
T ss_dssp HHHHHHHHTTCCCCEEEEECT
T ss_pred HHHHHHHhcCCCCCEEEEECC
Confidence 456667777788888888876
No 153
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.04 E-value=2.2e+02 Score=19.95 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=33.2
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhccee
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIV 113 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~ 113 (207)
..|-|+-|.|..+ |.+--.++.+.+++++-.+.++.-|.+..+ ...++|+++
T Consensus 29 vlv~f~a~wC~~C----~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~-----~~~~~~~v~ 80 (137)
T 2dj0_A 29 WIVEFFANWSNDC----QSFAPIYADLSLKYNCTGLNFGKVDVGRYT-----DVSTRYKVS 80 (137)
T ss_dssp EEEEECCTTCSTT----TTTHHHHHHHHHHHCSSSCEEEECCTTTCH-----HHHHHTTCC
T ss_pred EEEEEECCCCHHH----HHHHHHHHHHHHHhCCCCeEEEEEeCccCH-----HHHHHccCc
Confidence 4788999999998 555555666777765434455555544332 345678885
No 154
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=21.02 E-value=1.7e+02 Score=20.42 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=16.2
Q ss_pred HHHHHHHHhhCCCceEEEEcCC
Q psy15557 73 WTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 73 W~Ai~alq~~~~~~~~vIYTgd 94 (207)
+..++.+.+.+|+..+++.|++
T Consensus 64 ~~~~~~l~~~~~~~~ii~~s~~ 85 (151)
T 3kcn_A 64 TEVIQKARLISPNSVYLMLTGN 85 (151)
T ss_dssp HHHHHHHHHHCSSCEEEEEECG
T ss_pred HHHHHHHHhcCCCcEEEEEECC
Confidence 3455667777888888888876
No 155
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=20.84 E-value=1.1e+02 Score=20.44 Aligned_cols=50 Identities=10% Similarity=0.062 Sum_probs=28.4
Q ss_pred cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhccee
Q psy15557 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIV 113 (207)
Q Consensus 53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~ 113 (207)
..|-|+-|.|... |-+-..++.+.+++++..++--..| .++ ...++||++
T Consensus 21 vlv~f~a~wC~~C----~~~~p~~~~~~~~~~~~~~~~vd~~--~~~-----~l~~~~~v~ 70 (105)
T 4euy_A 21 VLLFIKTENCGVC----DVMLRKVNYVLENYNYVEKIEILLQ--DMQ-----EIAGRYAVF 70 (105)
T ss_dssp EEEEEEESSCHHH----HHHHHHHHHHHHTCTTEEEEEEEEC--CC--------------C
T ss_pred EEEEEeCCCCcch----HHHHHHHHHHHHHcCCceEEEEECC--CCH-----HHHHhcCCC
Confidence 4567888999877 7777888889998876554443333 232 344667765
No 156
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=20.72 E-value=1.8e+02 Score=19.84 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=17.3
Q ss_pred HHHHHHHHh--hCCCceEEEEcCC
Q psy15557 73 WTAVLALHQ--KYPDYKIYIYTGD 94 (207)
Q Consensus 73 W~Ai~alq~--~~~~~~~vIYTgd 94 (207)
+..++.+++ .+++..+++.|++
T Consensus 67 ~~~~~~l~~~~~~~~~~ii~ls~~ 90 (140)
T 3lua_A 67 LEVLSAIRNNSRTANTPVIIATKS 90 (140)
T ss_dssp HHHHHHHHHSGGGTTCCEEEEESC
T ss_pred HHHHHHHHhCcccCCCCEEEEeCC
Confidence 455667777 7889999999987
No 157
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=20.37 E-value=5.1e+02 Score=24.59 Aligned_cols=88 Identities=10% Similarity=0.035 Sum_probs=53.1
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhHHHHHHHHHHH
Q psy15557 74 TAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVE 153 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslGSi~L~~E 153 (207)
..-..++++-||.+.++..+. . ..++-+++..++.||+- +|+.|..-..+. . |+.
T Consensus 541 ~~W~~IL~~vP~S~L~Ll~~~-~-~~~~~l~~~~~~~gi~~--~r~~f~~~~~~~---~----~l~-------------- 595 (723)
T 4gyw_A 541 QMWANILKRVPNSVLWLLRFP-A-VGEPNIQQYAQNMGLPQ--NRIIFSPVAPKE---E----HVR-------------- 595 (723)
T ss_dssp HHHHHHHHHCSSEEEEEEETT-G-GGHHHHHHHHHHTTCCG--GGEEEEECCCHH---H----HHH--------------
T ss_pred HHHHHHHHhCCCCeEEEEeCc-H-HHHHHHHHHHHhcCCCc--CeEEECCCCCHH---H----HHH--------------
Confidence 334456778999999998765 3 33445555556678763 688877633321 0 111
Q ss_pred HHhcCCCCEEEECCCccchHHHH-HHhCCCeeEEee
Q psy15557 154 ALLSFQPDIYIDTMGYAFTYPLF-SYIGGSKVACYI 188 (207)
Q Consensus 154 Al~~~~PDVfIDTmGyaFtyPl~-k~l~g~~V~~Yv 188 (207)
.. ..-||+.||--|...-=-. .+-.|.||++-.
T Consensus 596 -~~-~~~Di~LDt~p~~g~tT~~eal~~GvPvvt~~ 629 (723)
T 4gyw_A 596 -RG-QLADVCLDTPLCNGHTTGMDVLWAGTPMVTMP 629 (723)
T ss_dssp -HG-GGCSEEECCSSSCCSHHHHHHHHTTCCEEBCC
T ss_pred -Hh-CCCeEEeCCCCcCCHHHHHHHHHcCCCEEEcc
Confidence 11 1269999998886554433 344588888754
No 158
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*
Probab=20.20 E-value=2e+02 Score=22.61 Aligned_cols=41 Identities=17% Similarity=0.124 Sum_probs=22.1
Q ss_pred ccEEEEEc-cCCCCC-CcchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557 52 LKTVAFFH-PYCNAG-GGGERVLWTAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 52 ~~~VgFFH-PycnaG-GGGERVLW~Ai~alq~~~~~~~~vIYTgd 94 (207)
+.+|.+.| |-...+ .|...-+..++..+.+++ ++. ++.+|+
T Consensus 179 ~~~iv~~H~p~~~~~~~~~~~~~~~~l~~~l~~~-~v~-~~l~GH 221 (313)
T 1ute_A 179 DYVLVAGHYPVWSIAEHGPTHCLVKQLLPLLTTH-KVT-AYLCGH 221 (313)
T ss_dssp SEEEEECSSCSSCCSSSCCCHHHHHHTHHHHHHT-TCS-EEEECS
T ss_pred CeEEEEECCCCccCCCCCCcHHHHHHHHHHHHHc-CCc-EEEECC
Confidence 34566665 433333 244444556666667665 443 455777
No 159
>2php_A Uncharacterized protein MJ0236; chlorine ION, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.03A {Methanocaldococcus jannaschii DSM2661} SCOP: c.74.1.2
Probab=20.14 E-value=3e+02 Score=22.66 Aligned_cols=79 Identities=18% Similarity=0.211 Sum_probs=47.7
Q ss_pred cchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhHHHH
Q psy15557 67 GGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIG 146 (207)
Q Consensus 67 GGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslG 146 (207)
|+-+=+=..+.+..+.+|+.++++=-- -.+++++++++ |.+.- .. +++.-|- ..+
T Consensus 74 GaS~H~Ar~lL~a~~~~P~iRsaiNIr----y~~~i~~~l~~--g~~v~-------~~------dr~~ePe------e~~ 128 (192)
T 2php_A 74 GASEHIAKIILSASKFNPEIRACMNIK----YDGGLIKLLKD--KFAVS-------SF------DRKEEPP------NVS 128 (192)
T ss_dssp TSCHHHHHHHHHHHTTCTTCCEEEEEC----CCHHHHHHHTT--TSCEE-------EC------CGGGCCT------TSC
T ss_pred CCcHHHHHHHHHHHHhCCCceEEEEEe----cCHHHHHHHHc--CCeEE-------EE------CCCCCCc------ccc
Confidence 344445567778888899999998432 23788888877 54432 11 2222221 344
Q ss_pred HHHHH-HHHHhc--CCCCEEEECCCcc
Q psy15557 147 SMILG-VEALLS--FQPDIYIDTMGYA 170 (207)
Q Consensus 147 Si~L~-~EAl~~--~~PDVfIDTmGya 170 (207)
+|--+ -+|+.+ -.|||.+|+=|+.
T Consensus 129 tm~W~i~~a~~~~~~~PdvIyd~G~~G 155 (192)
T 2php_A 129 TMEWGTKIACEKFGGVPDIIYDRGGEG 155 (192)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEECCBBT
T ss_pred hhhHHHHHHHHhcCCCCeEEEeCCCCC
Confidence 44333 345554 5899999997753
No 160
>3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L}
Probab=20.08 E-value=2.1e+02 Score=20.88 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=14.8
Q ss_pred CchhhhhHHHHHHHHHHHHHhc
Q psy15557 136 PYFTLLGQSIGSMILGVEALLS 157 (207)
Q Consensus 136 p~fTLLgQslGSi~L~~EAl~~ 157 (207)
.++.++|.|.|+.+ ++++..+
T Consensus 95 ~~~~l~G~S~Gg~~-a~~~a~~ 115 (286)
T 3qit_A 95 QPLLLVGHSMGAML-ATAIASV 115 (286)
T ss_dssp SCEEEEEETHHHHH-HHHHHHH
T ss_pred CCEEEEEeCHHHHH-HHHHHHh
Confidence 45789999999985 4444444
No 161
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=20.07 E-value=2e+02 Score=19.09 Aligned_cols=21 Identities=10% Similarity=0.086 Sum_probs=15.4
Q ss_pred HHHHHHHhhCCCceEEEEcCC
Q psy15557 74 TAVLALHQKYPDYKIYIYTGD 94 (207)
Q Consensus 74 ~Ai~alq~~~~~~~~vIYTgd 94 (207)
..++.+++.+|+..+++.|+.
T Consensus 64 ~~~~~l~~~~~~~~ii~~s~~ 84 (124)
T 1srr_A 64 EILKRMKVIDENIRVIIMTAY 84 (124)
T ss_dssp HHHHHHHHHCTTCEEEEEESS
T ss_pred HHHHHHHHhCCCCCEEEEEcc
Confidence 456667766778888888876
Done!