RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15557
(207 letters)
>gnl|CDD|99978 cd03806, GT1_ALG11_like, This family is most closely related to the
GT1 family of glycosyltransferases. ALG11 in yeast is
involved in adding the final 1,2-linked Man to the
Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of
the ER. The deletion analysis of ALG11 was shown to
block the early steps of core biosynthesis that takes
place on the cytoplasmic face of the ER and lead to a
defect in the assembly of lipid-linked oligosaccharides.
Length = 419
Score = 251 bits (644), Expect = 7e-83
Identities = 90/143 (62%), Positives = 106/143 (74%)
Query: 53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNI 112
TV FFHPYCNAGGGGERVLW AV AL ++YP+ + IYTGD+DA+P EI+++ RFNI
Sbjct: 1 NTVGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNI 60
Query: 113 VLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFT 172
L I F L RK VEAS YP FTLLGQ++GSMILG+EALL PDI+IDTMGY FT
Sbjct: 61 ELDRPRIVFFLLKYRKLVEASTYPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFT 120
Query: 173 YPLFSYIGGSKVACYIHYPTITK 195
YPL +GG V Y+HYPTI+
Sbjct: 121 YPLVRLLGGCPVGAYVHYPTIST 143
>gnl|CDD|215511 PLN02949, PLN02949, transferase, transferring glycosyl groups.
Length = 463
Score = 198 bits (504), Expect = 2e-61
Identities = 85/184 (46%), Positives = 112/184 (60%), Gaps = 11/184 (5%)
Query: 11 MWLVFLFYSILALILLLIIVLPISVLLFKYYVSKKRKSYNVLKTVAFFHPYCNAGGGGER 70
M + + Y +L I+LL++ + +SVL R + + V FFHPY N GGGGER
Sbjct: 1 MAIWLILYHLLTSIVLLLVAIALSVL---------RARRSRKRAVGFFHPYTNDGGGGER 51
Query: 71 VLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFV 130
VLW AV A+ ++ PD IYTGD DASP + RA RF + L V+L +RK++
Sbjct: 52 VLWCAVRAIQEENPDLDCVIYTGDHDASPDSLAARARDRFGVELL-SPPKVVHLRKRKWI 110
Query: 131 EASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHY 190
E YP FT++GQS+GS+ L EAL F P + DT GYAFTYPL + + G KV CY HY
Sbjct: 111 EEETYPRFTMIGQSLGSVYLAWEALCKFTPLYFFDTSGYAFTYPL-ARLFGCKVVCYTHY 169
Query: 191 PTIT 194
PTI+
Sbjct: 170 PTIS 173
>gnl|CDD|99976 cd03804, GT1_wbaZ_like, This family is most closely related to the
GT1 family of glycosyltransferases. wbaZ in Salmonella
enterica has been shown to possess the mannosyl
transferase activity. The members of this family are
found in certain bacteria and Archaea.
Length = 351
Score = 36.0 bits (84), Expect = 0.010
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 55 VAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIY-IYTGDVDASPSEIIKRAHQRFNIV 113
VA H + GGGE+V V AL + +PD I+ + +K+ F
Sbjct: 2 VAIVHDWLVNIGGGEKV----VEALARLFPDADIFTLVDDPDKLPRLLRLKKIRTSFIQK 57
Query: 114 LP 115
LP
Sbjct: 58 LP 59
>gnl|CDD|238929 cd01967, Nitrogenase_MoFe_alpha_like, Nitrogenase_MoFe_alpha_like:
Nitrogenase MoFe protein, alpha subunit_like. The
nitrogenase enzyme catalyzes the ATP-dependent reduction
of dinitrogen to ammonia. Three genetically distinct
types of nitrogenase systems are known to exist: a
molybdenum-dependent nitrogenase (Mo-nitrogenase), a
vanadium dependent nitrogenase (V-nitrogenase), and an
iron-only nitrogenase (Fe-nitrogenase). These
nitrogenase systems consist of component 1 (MoFe
protein, VFe protein or, FeFe protein respectively) and,
component 2 (Fe protein). This group contains the alpha
subunit of component 1 of all three different forms. The
most widespread and best characterized of these systems
is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer,
the alternative nitrogenases are alpha2beta2delta2
hexamers having alpha and beta subunits similar to the
alpha and beta subunits of MoFe. The role of the delta
subunit is unknown. For MoFe, each alphabeta pair of
subunits contains one P-cluster (located at the
alphabeta interface) and, one molecule of iron
molybdenum cofactor (FeMoco) contained within the alpha
subunit. The Fe protein is a homodimer which contains, a
single [4Fe-4S] cluster from which electrons are
transferred to the P-cluster of the MoFe and in turn,
to FeMoCo the site of substrate reduction. The
V-nitrogenase requires an iron-vanadium cofactor
(FeVco), the iron only-nitrogenase an iron only cofactor
(FeFeco). These cofactors are analogous to the FeMoco.
The V-nitrogenase has P clusters identical to those of
MoFe. In addition to N2, nitrogenase also catalyzes the
reduction of a variety of other substrates such as
acetylene The V-nitrogenase differs from the Mo-
nitrogenase in that it produces free hydrazine, as a
minor product during dinitrogen reduction and, ethane
as a minor product during acetylene reduction.
Length = 406
Score = 32.6 bits (75), Expect = 0.12
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 13/58 (22%)
Query: 67 GGERVLWTAVLALHQKYPDYKIYIYTG--------DVDASPSEIIKRAHQRFNI-VLP 115
GGE+ L A+ ++++P I++Y+ D++A + K A + I V+P
Sbjct: 70 GGEKKLKKAIKEAYERFPPKAIFVYSTCPTGLIGDDIEA----VAKEASKELGIPVIP 123
>gnl|CDD|215966 pfam00517, GP41, Retroviral envelope protein. This family includes
envelope protein from a variety of retroviruses. It
includes the GP41 subunit of the envelope protein
complex from human and simian immunodeficiency viruses
(HIV and SIV) which mediate membrane fusion during viral
entry. The family also includes bovine immunodeficiency
virus, feline immunodeficiency virus and Equine
infectious anaemia (EIAV). The family also includes the
Gp36 protein from mouse mammary tumour virus (MMTV) and
human endogenous retroviruses (HERVs).
Length = 204
Score = 31.2 bits (71), Expect = 0.24
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 6 WTSVVMWLVFLFYSILALILLLIIVLPISVLLFKYYVSKKRKSYNVL 52
W W+ ++ IL ILL+IIVL I + + + R+ Y+ L
Sbjct: 147 WFDWTSWISYIKIGIL--ILLIIIVLRILPGVLR-NCRRVRQGYSPL 190
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 30.8 bits (70), Expect = 0.53
Identities = 9/40 (22%), Positives = 22/40 (55%)
Query: 8 SVVMWLVFLFYSILALILLLIIVLPISVLLFKYYVSKKRK 47
+V+ + L Y L L+++++LP+ +L + + R+
Sbjct: 141 TVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRR 180
>gnl|CDD|184699 PRK14478, PRK14478, nitrogenase molybdenum-cofactor biosynthesis
protein NifE; Provisional.
Length = 475
Score = 30.4 bits (69), Expect = 0.65
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 13/65 (20%)
Query: 67 GGERVLWTAVLALHQKYPDYKIYIY----TG----DVDASPSEIIKRAHQRFNI-VLPEQ 117
GGE+ L+ A+ + +KY +++Y D+DA + KRA ++F I V+P
Sbjct: 102 GGEKKLFKAIDEIIEKYAPPAVFVYQTCVVALIGDDIDA----VCKRAAEKFGIPVIPVN 157
Query: 118 AINFV 122
+ FV
Sbjct: 158 SPGFV 162
>gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase.
Length = 565
Score = 29.9 bits (67), Expect = 1.0
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 40 YYVSKKRKSYNVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPD 85
Y + KKR S L+T A P N G RV A H+ + +
Sbjct: 197 YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 242
>gnl|CDD|148332 pfam06667, PspB, Phage shock protein B. This family consists of
several bacterial phage shock protein B (PspB)
sequences. The phage shock protein (psp) operon is
induced in response to heat, ethanol, osmotic shock and
infection by filamentous bacteriophages. Expression of
the operon requires the alternative sigma factor
sigma54 and the transcriptional activator PspF. In
addition, PspA plays a negative regulatory role, and
the integral-membrane proteins PspB and PspC play a
positive one.
Length = 75
Score = 27.6 bits (62), Expect = 1.4
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 11 MWLVFLFYSILALILLLIIVLPISVLLFKYYVSKKRKS 48
M + FL + LI+ ++ V PI L +Y SK + S
Sbjct: 1 MSMEFLA---VPLIIFMLFVAPI--WLILHYRSKWKVS 33
>gnl|CDD|236526 PRK09458, pspB, phage shock protein B; Provisional.
Length = 75
Score = 27.5 bits (62), Expect = 1.5
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 11 MWLVFLFYSILALILLLIIVLPISVLLFKYYVSKKRKS 48
M +FL + L + ++ V PI L+ +Y SK++ S
Sbjct: 1 MSALFLA---IPLTIFVLFVAPI--WLWLHYRSKRQGS 33
>gnl|CDD|216655 pfam01708, Gemini_mov, Geminivirus putative movement protein.
This family consists of putative movement proteins from
Maize streak and wheat dwarf virus.
Length = 92
Score = 27.4 bits (61), Expect = 1.8
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 6 WTSVVMWLVFLFYSILALILLLIIVLPISVLLFKYYVSKKRKS 48
W+ V +F ++ L LL VL +L+ K +K+ +S
Sbjct: 34 WSRVGEIAIFTLVAVGVLYLLYTWVLKDLILVLK---AKRGRS 73
>gnl|CDD|236051 PRK07565, PRK07565, dihydroorotate dehydrogenase 2; Reviewed.
Length = 334
Score = 28.7 bits (65), Expect = 2.5
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 13/47 (27%)
Query: 130 VEASLYPYFTLLGQSIGSMI-----LGVEALLSF----QPDIYIDTM 167
V L PYF+ ++ +M G + L+ F QPDI ++T+
Sbjct: 168 VAVKLSPYFS----NLANMAKRLDAAGADGLVLFNRFYQPDIDLETL 210
>gnl|CDD|220281 pfam09531, Ndc1_Nup, Nucleoporin protein Ndc1-Nup. Ndc1 is a
nucleoporin protein that is a component of the Nuclear
Pore Complex, and, in fungi, also of the Spindle Pole
Body. It consists of six transmembrane segments, three
lumenal loops, both concentrated at the N-terminus and
cytoplasmic domains largely at the C-terminus, all of
which are well conserved.
Length = 557
Score = 28.4 bits (64), Expect = 2.6
Identities = 10/51 (19%), Positives = 20/51 (39%)
Query: 6 WTSVVMWLVFLFYSILALILLLIIVLPISVLLFKYYVSKKRKSYNVLKTVA 56
W+S L Y+ + +LL + +L I +L R + + +
Sbjct: 34 WSSGSWSLFPSGYTGIRSLLLFLALLLIGILRKNQLHVGYRPYSSRIAQIL 84
>gnl|CDD|238930 cd01968, Nitrogenase_NifE_I, Nitrogenase_NifE_I: a subgroup of the
NifE subunit of the NifEN complex: NifE forms an
alpha2beta2 tetramer with NifN. NifE and NifN are
structurally homologous to nitrogenase MoFe protein
alpha and beta subunits respectively. NifEN
participates in the synthesis of the iron-molybdenum
cofactor (FeMoco) of the MoFe protein. NifB-co (an iron
and sulfur containing precursor of the FeMoco) from NifB
is transferred to the NifEN complex where it is further
processed to FeMoco. The NifEN bound precursor of FeMoco
has been identified as a molybdenum-free, iron- and
sulfur- containing analog of FeMoco. It has been
suggested that this NifEN bound precursor also acts as a
cofactor precursor in nitrogenase systems which require
a cofactor other than FeMoco: i.e. iron-vanadium
cofactor (FeVco) or iron only cofactor (FeFeco).
Length = 410
Score = 28.4 bits (64), Expect = 2.7
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 12/57 (21%)
Query: 67 GGERVLWTAVLALHQKYPDYKIYIY----TG----DVDASPSEIIKRAHQRFNIVLP 115
GGE+ L+ A+L + ++Y +++Y D+DA + K A ++F I +
Sbjct: 69 GGEKKLYKAILEIIERYHPKAVFVYSTCVVALIGDDIDA----VCKTASEKFGIPVI 121
>gnl|CDD|226346 COG3825, COG3825, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 393
Score = 28.2 bits (63), Expect = 2.8
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 79 LHQKYPDYKIYIYTGDVDASPSEI 102
LH+ PDYK+ I+ GD +P EI
Sbjct: 296 LHKYGPDYKV-IFVGDATMAPYEI 318
>gnl|CDD|240090 cd04739, DHOD_like, Dihydroorotate dehydrogenase (DHOD) like
proteins. DHOD catalyzes the oxidation of
(S)-dihydroorotate to orotate. This is the fourth step
and the only redox reaction in the de novo biosynthesis
of UMP, the precursor of all pyrimidine nucleotides.
DHOD requires FMN as co-factor. DHOD divides into class
1 and class 2 based on their amino acid sequences and
cellular location. Members of class 1 are cytosolic
enzymes and multimers while class 2 enzymes are membrane
associated and monomeric. The class 1 enzymes can be
further divided into subtypes 1A and 1B which are
homodimers and heterotetrameric proteins, respectively.
This subgroup has the conserved FMN binding site, but
lacks some catalytic residues and may therefore be
inactive.
Length = 325
Score = 28.3 bits (64), Expect = 2.9
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 13/47 (27%)
Query: 130 VEASLYPYFTLLGQSIGSMI-----LGVEALLSF----QPDIYIDTM 167
V L P+F+ ++ M G + L+ F QPDI ++T+
Sbjct: 166 VAVKLSPFFS----ALAHMAKQLDAAGADGLVLFNRFYQPDIDLETL 208
>gnl|CDD|172952 PRK14477, PRK14477, bifunctional nitrogenase molybdenum-cofactor
biosynthesis protein NifE/NifN; Provisional.
Length = 917
Score = 28.6 bits (64), Expect = 3.0
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 13/65 (20%)
Query: 67 GGERVLWTAVLALHQKYPDYKIYIY-------TG-DVDASPSEIIKRAHQRFNI-VLPEQ 117
GGE+ L+ A+L L ++Y +++Y TG DV+A + K A ++ I V+P
Sbjct: 95 GGEKKLYRAILELAERYQPKAVFVYATCVTALTGDDVEA----VCKAAAEKVGIPVIPVN 150
Query: 118 AINFV 122
F+
Sbjct: 151 TPGFI 155
>gnl|CDD|114299 pfam05568, ASFV_J13L, African swine fever virus J13L protein.
This family consists of several African swine fever
virus J13L proteins.
Length = 189
Score = 27.9 bits (61), Expect = 3.1
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 5/46 (10%)
Query: 18 YSILALILLLIIVLPISVLLFKYYVSKKRKSYNVLKT--VAFFHPY 61
Y+IL I++LII++ + + LF S+K+K+ ++ + F +PY
Sbjct: 32 YTILIAIVVLIIIIIVLIYLFS---SRKKKAAAAIEEEDIQFINPY 74
>gnl|CDD|166000 PLN02359, PLN02359, ethanolaminephosphotransferase.
Length = 389
Score = 28.2 bits (63), Expect = 3.3
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 12/71 (16%)
Query: 113 VLPEQAINFVYLYRRKFVE----------ASLYPYFTLLGQSIGSMILGVEALLSFQPDI 162
V+P A N +Y K V+ A LYP+ TLLG + L L+ P +
Sbjct: 230 VIPTVAFNVSNVY--KVVQARKGSMLLALAMLYPFVTLLGGVLIWDYLSPSDLMRNYPHL 287
Query: 163 YIDTMGYAFTY 173
+ G AF +
Sbjct: 288 VVLGTGLAFGF 298
>gnl|CDD|217147 pfam02618, YceG, YceG-like family. This family of proteins is
found in bacteria. Proteins in this family are typically
between 332 and 389 amino acids in length. This family
was previously incorrectly annotated and names as
aminodeoxychorismate lyase. The structure of Escherichia
coli yceG was solved by X-ray crystallography.
Length = 291
Score = 27.5 bits (62), Expect = 5.4
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 83 YPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQ 117
+PD Y + S EI+KR +RF VL E
Sbjct: 125 FPD--TYEFDKG--TSAEEILKRMVKRFEKVLAEA 155
>gnl|CDD|215459 PLN02854, PLN02854, 3-ketoacyl-CoA synthase.
Length = 521
Score = 27.2 bits (60), Expect = 6.5
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 112 IVLP--EQAINFVYLYRRKFVEASLYPY 137
+VLP EQ + FV L RRK ++A + PY
Sbjct: 376 LVLPLSEQFMFFVTLVRRKLLKAKVKPY 403
>gnl|CDD|215118 PLN02177, PLN02177, glycerol-3-phosphate acyltransferase.
Length = 497
Score = 27.2 bits (60), Expect = 6.7
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 14/82 (17%)
Query: 130 VEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIH 189
+ S +PY+ L+ GS++ + LLS P +Y FTY S K +I
Sbjct: 35 ISRSAFPYYLLVALEAGSLLRALILLLSV-PFVY-------FTYLFISESLAIKTFVFIA 86
Query: 190 YPTIT------KAQSALPRVIA 205
+ + ++S LP+ A
Sbjct: 87 FAGLKIRDIELVSRSVLPKFYA 108
>gnl|CDD|225962 COG3428, COG3428, Predicted membrane protein [Function unknown].
Length = 494
Score = 27.4 bits (61), Expect = 6.8
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 6 WTSVVMWLVFLFYSILALILLLIIVLPISVLLFKYYVSKKRKSYNVLK 53
+ +V + +L L+ L+ I++ +F++Y + K VL
Sbjct: 226 VPVTGVIVVVVLAVLLLLVAWLLS---IALTMFRFYGFQVMKENGVLH 270
>gnl|CDD|177123 MTH00048, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 511
Score = 27.3 bits (61), Expect = 7.0
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 16/66 (24%)
Query: 7 TSVVMWLVFLFYSILALILLLIIVLPISVLLFKYYVSKKRKSYNVLKTVAFFHPYCNAGG 66
TS+++W +LF SIL L+ L ++ I++LLF AFF P G
Sbjct: 179 TSIILW-SYLFTSILLLLSLPVLAAAITMLLFDRNFGS-----------AFFDPL----G 222
Query: 67 GGERVL 72
GG+ VL
Sbjct: 223 GGDPVL 228
>gnl|CDD|216066 pfam00695, vMSA, Major surface antigen from hepadnavirus.
Length = 364
Score = 27.3 bits (60), Expect = 7.3
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 5 LWTSVVMWLVFLFYSILALILLLII-----VLPISVLLFKYYVSKKRKSYNVLKTVAFFH 59
W + +++FL +LAL LL++ +LP+ L+ + K+
Sbjct: 218 RWMYLRRFIIFLLILLLALGFLLVLLDYQGMLPVCPLIPGSTTTSTCKTCTTPAQGNSMF 277
Query: 60 PYC 62
P C
Sbjct: 278 PSC 280
>gnl|CDD|237336 PRK13288, PRK13288, pyrophosphatase PpaX; Provisional.
Length = 214
Score = 26.5 bits (59), Expect = 8.6
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 149 ILGVEALLSFQPDIYIDTM 167
I G E L ++PD +D M
Sbjct: 185 IKGREYLEQYKPDFMLDKM 203
>gnl|CDD|107330 cd06335, PBP1_ABC_ligand_binding_like_2, Type I periplasmic
ligand-binding domain of uncharacterized ABC (ATPase
Binding Cassette)-type active transport systems that are
predicted to be involved in transport of amino acids,
peptides, or inorganic ions. This subgroup includes the
type I periplasmic ligand-binding domain of
uncharacterized ABC (ATPase Binding Cassette)-type
active transport systems that are predicted to be
involved in transport of amino acids, peptides, or
inorganic ions. Members of this group are
sequence-similar to members of the family of ABC-type
hydrophobic amino acid transporters, such as
leucine-isoleucine-valine-binding protein (LIVBP);
however their ligand specificity has not been determined
experimentally.
Length = 347
Score = 26.8 bits (60), Expect = 8.9
Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 52 LKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRA 106
K VA G + L TA LA P + GD D + + RA
Sbjct: 138 FKKVALLLDNTGWGRSNRKDL-TAALAARGLKPVAVEWFNWGDKDMTA--QLLRA 189
>gnl|CDD|235550 PRK05660, PRK05660, HemN family oxidoreductase; Provisional.
Length = 378
Score = 26.8 bits (60), Expect = 9.6
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 142 GQSIGSMILGVEALLSFQPDIYIDTM 167
++I ++ GV A L F PD I TM
Sbjct: 74 AEAIQRLLDGVRARLPFAPDAEI-TM 98
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.144 0.449
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,969,009
Number of extensions: 1060264
Number of successful extensions: 3510
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3448
Number of HSP's successfully gapped: 205
Length of query: 207
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 115
Effective length of database: 6,857,034
Effective search space: 788558910
Effective search space used: 788558910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.1 bits)