RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15557
         (207 letters)



>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
           channel, transport protein, casse protein; 2.00A {Homo
           sapiens} PDB: 2onj_A* 2hyd_A
          Length = 578

 Score = 29.1 bits (66), Expect = 1.2
 Identities = 8/42 (19%), Positives = 20/42 (47%)

Query: 8   SVVMWLVFLFYSILALILLLIIVLPISVLLFKYYVSKKRKSY 49
           ++++ L  +F+  + L L  + + P  +L    +  + RK  
Sbjct: 148 TIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLT 189


>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus
           stearothermophilus} PDB: 2x0f_A* 2x0e_A*
          Length = 413

 Score = 28.2 bits (62), Expect = 2.1
 Identities = 13/96 (13%), Positives = 22/96 (22%), Gaps = 2/96 (2%)

Query: 44  KKRKSYNVLKTVAFFHPYCNAGG--GGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSE 101
             R S    K +    P  N     GG             K    +I +     +    +
Sbjct: 38  NARTSSIKGKRLNLLVPSINQEHMFGGISTALKLFEQFDNKKFKKRIILTDATPNPKDLQ 97

Query: 102 IIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPY 137
             K           + A+  V    R      +  +
Sbjct: 98  SFKSFKYVMPEEDKDFALQIVPFNDRYNRTIPVAKH 133


>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
           lipid flippase, hydrolase, inner membrane, lipid
           transport, membrane; 5.50A {Vibrio cholerae}
          Length = 582

 Score = 27.9 bits (63), Expect = 2.6
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 8   SVVMWLVFLFYSILALILLLIIVLPISVLLFKYYVSKKRK 47
           S++  L  +F++   L L+LI+V P+      +   + RK
Sbjct: 152 SIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRK 191


>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
           lipid flippase, hydrolase, inner membrane, lipid
           transport, membrane; HET: ANP; 3.70A {Salmonella
           typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
           3b5z_A* 3b5w_A
          Length = 582

 Score = 27.5 bits (62), Expect = 3.2
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 8   SVVMWLVFLFYSILALILLLIIVLPISVLLFKYYVSKKRK 47
           S++   + +FY    L ++L+++ PI  +  +    + R 
Sbjct: 152 SIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRS 191


>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase,
           glycosidase, ISO-amylase glycosyl hydrolase, glycogen
           metabolism; 2.25A {Escherichia coli k-12}
          Length = 657

 Score = 27.6 bits (62), Expect = 3.7
 Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 6/36 (16%)

Query: 49  YNVLKTVAFFHP---YCNAGGGGERVLWTAVLALHQ 81
           YN    VA F     Y  +          A+ ALH+
Sbjct: 221 YN---PVAMFALHPAYACSPETALDEFRDAIKALHK 253


>2r1f_A Protein YCEG, predicted aminodeoxychorismate lyase; structural
           genomics, unknown function, PFAM 02618, PSI-2, PR
           structure initiative; 2.21A {Escherichia coli}
          Length = 270

 Score = 26.8 bits (60), Expect = 4.3
 Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 6/35 (17%)

Query: 83  YPD-YKIYIYTGDVDASPSEIIKRAHQRFNIVLPE 116
           +PD +         + +   ++KRAH++    +  
Sbjct: 92  WPDTWMYT-----ANTTDVALLKRAHKKMVKAVDS 121


>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
           kinase, STRU genomics, joint center for structural
           genomics, JCSG; 1.95A {Silicibacter SP}
          Length = 208

 Score = 26.6 bits (59), Expect = 5.6
 Identities = 5/26 (19%), Positives = 11/26 (42%), Gaps = 5/26 (19%)

Query: 85  DYKIYIYTGDVDASPSEIIKRAHQRF 110
           D  I      ++   +++  R  QR+
Sbjct: 149 DVSIR-----LEVPMADLEARLVQRW 169


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.1 bits (56), Expect = 7.5
 Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 8/22 (36%)

Query: 116 EQAINFVYLYRRKFVEASLYPY 137
           +QA+       +K ++ASL  Y
Sbjct: 19  KQAL-------KK-LQASLKLY 32


>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
           transport protein; HET: ANP; 2.90A {Thermotoga maritima}
          Length = 587

 Score = 26.4 bits (59), Expect = 8.1
 Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 1   MFCCLWTSVVMWLVFLFYSILALILLLIIVLPISVLLFK 39
           +   +  +V +  V +F  I  ++LL + +      LF+
Sbjct: 155 IVMAVSINVKLSSVLIF-LIPPIVLLFVWLTKKGNPLFR 192


>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
           cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
           {Azotobacter vinelandii}
          Length = 483

 Score = 26.3 bits (58), Expect = 9.1
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 13/59 (22%)

Query: 66  GGGERVLWTAVLALHQKYPDYKIYIYTG--------DVDASPSEIIKRAHQRFNI-VLP 115
           G  E+ L+ A+    + Y    +++Y          DVDA    + K A +RF   V+P
Sbjct: 104 GRAEKRLFHAIRQAVESYSPPAVFVYNTCVPALIGDDVDA----VCKAAAERFGTPVIP 158


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.330    0.144    0.449 

Gapped
Lambda     K      H
   0.267   0.0792    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,242,211
Number of extensions: 186878
Number of successful extensions: 584
Number of sequences better than 10.0: 1
Number of HSP's gapped: 584
Number of HSP's successfully gapped: 21
Length of query: 207
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 118
Effective length of database: 4,216,824
Effective search space: 497585232
Effective search space used: 497585232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (24.8 bits)