RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15557
         (207 letters)



>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
           1, different strains [TaxId: 10298]}
          Length = 329

 Score = 28.0 bits (62), Expect = 0.82
 Identities = 10/92 (10%), Positives = 20/92 (21%), Gaps = 11/92 (11%)

Query: 49  YNVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQ 108
            + +  +  +       G        A +AL          +            I R  +
Sbjct: 118 RHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVL---GALPEDRHIDRLAK 174

Query: 109 RFNIVLPEQAINFVYLYR-----RKFVEASLY 135
           R     P + ++   L               Y
Sbjct: 175 RQR---PGERLDLAMLAAIRRVYGLLANTVRY 203


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.144    0.449 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 795,285
Number of extensions: 36105
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 13
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.9 bits)