Query psy15561
Match_columns 75
No_of_seqs 111 out of 1033
Neff 4.7
Searched_HMMs 46136
Date Sat Aug 17 00:25:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15561.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15561hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13792 Sulfate_tra_GLY: Sulf 99.9 1.4E-22 3.1E-27 128.3 4.5 53 18-70 1-54 (84)
2 KOG0236|consensus 99.8 3.5E-20 7.5E-25 149.7 -0.2 61 11-71 58-119 (665)
3 TIGR00815 sulP high affinity s 99.7 1.6E-17 3.4E-22 130.6 3.4 52 19-70 1-52 (563)
4 PRK11660 putative transporter; 99.7 1.5E-17 3.2E-22 131.1 2.9 58 13-70 5-67 (568)
5 COG0659 SUL1 Sulfate permease 99.6 4.5E-16 9.7E-21 124.0 2.6 58 13-70 2-59 (554)
6 COG1296 AzlC Predicted branche 63.1 14 0.00031 27.3 4.1 35 29-63 9-46 (238)
7 PHA02764 hypothetical protein; 39.8 46 0.00099 26.8 3.7 29 36-64 49-77 (399)
8 PF02038 ATP1G1_PLM_MAT8: ATP1 32.5 69 0.0015 18.7 2.8 25 26-53 8-32 (50)
9 COG2928 Uncharacterized conser 32.0 77 0.0017 23.6 3.7 26 29-57 3-28 (222)
10 PRK05910 type III secretion sy 31.6 49 0.0011 27.8 2.8 29 30-58 186-214 (584)
11 PF03779 SPW: SPW repeat; Int 30.7 65 0.0014 18.4 2.5 28 23-50 17-46 (51)
12 PF01256 Carb_kinase: Carbohyd 30.1 43 0.00094 24.3 2.1 16 32-47 186-201 (242)
13 PRK10650 multidrug efflux syst 30.0 33 0.00072 22.4 1.4 21 40-60 52-72 (109)
14 PRK11431 multidrug efflux syst 30.0 33 0.00071 22.2 1.3 23 39-61 45-67 (105)
15 PRK12792 flhA flagellar biosyn 28.8 58 0.0013 27.9 2.9 27 30-56 199-225 (694)
16 PRK12720 secretion system appa 28.7 45 0.00097 28.5 2.2 26 31-56 194-219 (675)
17 TIGR01399 hrcV type III secret 27.7 60 0.0013 27.7 2.8 30 31-60 182-212 (677)
18 PRK15337 type III secretion sy 25.8 57 0.0012 27.9 2.3 26 31-56 192-217 (686)
19 PF14378 PAP2_3: PAP2 superfam 25.6 58 0.0013 22.1 2.0 16 32-47 174-189 (191)
20 COG2076 EmrE Membrane transpor 25.5 46 0.001 22.0 1.4 22 39-60 46-67 (106)
21 TIGR01559 squal_synth farnesyl 25.2 59 0.0013 25.0 2.2 18 41-58 251-268 (336)
22 TIGR01398 FlhA flagellar biosy 24.8 68 0.0015 27.4 2.6 26 30-55 185-210 (678)
23 PF08924 DUF1906: Domain of un 23.9 1.4E+02 0.003 19.8 3.6 54 16-74 53-106 (136)
24 PRK09541 emrE multidrug efflux 23.3 45 0.00098 21.6 1.1 22 39-60 46-67 (110)
25 COG0063 Predicted sugar kinase 22.5 62 0.0013 24.4 1.8 16 33-48 224-239 (284)
26 COG5336 Uncharacterized protei 22.3 83 0.0018 21.4 2.2 15 31-45 47-61 (116)
27 PF00893 Multi_Drug_Res: Small 21.0 54 0.0012 20.2 1.0 22 40-61 46-67 (93)
28 PF10399 UCR_Fe-S_N: Ubiquitin 21.0 1.4E+02 0.0031 16.4 2.7 19 31-49 9-34 (41)
29 PRK06012 flhA flagellar biosyn 20.8 56 0.0012 27.8 1.4 27 30-56 202-228 (697)
30 PF04217 DUF412: Protein of un 20.4 40 0.00087 23.5 0.4 24 43-66 58-81 (143)
No 1
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=99.87 E-value=1.4e-22 Score=128.28 Aligned_cols=53 Identities=49% Similarity=0.864 Sum_probs=50.9
Q ss_pred ccccccCCCCCh-hhhHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccceeecc
Q psy15561 18 LPILKWLPTYDR-ESLVHDFIAGLTVGLTAIPQGIAYAVVAGLQPQVSPIVPAN 70 (75)
Q Consensus 18 ~P~l~wl~~Y~~-~~l~~D~~AGltva~~~IPq~mayA~lAGvpp~~GLYt~~~ 70 (75)
+|+++|+++|++ +++++|++||+|+++++|||+||||.+||+||++|||+++.
T Consensus 1 ~P~l~wl~~y~~k~~~~~D~~aGltva~~~iPq~~a~A~lAg~pp~~GLy~a~~ 54 (84)
T PF13792_consen 1 FPILQWLPRYSWKSNLRGDLLAGLTVALVAIPQGMAYALLAGVPPIYGLYAAII 54 (84)
T ss_pred CCchhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeHHHHH
Confidence 699999999996 99999999999999999999999999999999999999864
No 2
>KOG0236|consensus
Probab=99.77 E-value=3.5e-20 Score=149.73 Aligned_cols=61 Identities=48% Similarity=0.735 Sum_probs=57.5
Q ss_pred HHHHhhhccccccCCCCCh-hhhHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccceeeccC
Q psy15561 11 SQRLKQRLPILKWLPTYDR-ESLVHDFIAGLTVGLTAIPQGIAYAVVAGLQPQVSPIVPANF 71 (75)
Q Consensus 11 ~~~~~~~~P~l~wl~~Y~~-~~l~~D~~AGltva~~~IPq~mayA~lAGvpp~~GLYt~~~~ 71 (75)
.+.+.+++|+++|+|+|++ +|+.+|++||+|+++++|||+||||++||+||+||||+++..
T Consensus 58 ~~~l~~~~Pil~Wlp~Y~~~~~l~~DliaGltvg~l~VPQ~iaYa~la~lppiyGLYssf~~ 119 (665)
T KOG0236|consen 58 LRSLLSLLPILEWLPKYSLKEWLLGDLIAGLTVGSLSVPQGLAYALLAGLPPIYGLYSSFFP 119 (665)
T ss_pred HHHHHhhccHhhhhhcCCchhhchHHHhcCceeeeeecchHHHHHHHcCCChHHHHHHHHHH
Confidence 4567889999999999999 899999999999999999999999999999999999999853
No 3
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=99.68 E-value=1.6e-17 Score=130.62 Aligned_cols=52 Identities=44% Similarity=0.828 Sum_probs=50.4
Q ss_pred cccccCCCCChhhhHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccceeecc
Q psy15561 19 PILKWLPTYDRESLVHDFIAGLTVGLTAIPQGIAYAVVAGLQPQVSPIVPAN 70 (75)
Q Consensus 19 P~l~wl~~Y~~~~l~~D~~AGltva~~~IPq~mayA~lAGvpp~~GLYt~~~ 70 (75)
|+++|+++|+++++++|++||+|+++++|||+||||.+||+||++|||+++.
T Consensus 1 p~~~wl~~y~~~~l~~Di~aGltv~~~~iP~~~ayA~laglpp~~GLysa~~ 52 (563)
T TIGR00815 1 PVLRWLPHYRLKKFKGDLMAGLTVGILLIPQAMAYAILAGLSPIYGLYTSFV 52 (563)
T ss_pred ChhhhhhhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhHHHHH
Confidence 7899999999999999999999999999999999999999999999999874
No 4
>PRK11660 putative transporter; Provisional
Probab=99.68 E-value=1.5e-17 Score=131.07 Aligned_cols=58 Identities=34% Similarity=0.585 Sum_probs=52.1
Q ss_pred HHhhhccccc-----cCCCCChhhhHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccceeecc
Q psy15561 13 RLKQRLPILK-----WLPTYDRESLVHDFIAGLTVGLTAIPQGIAYAVVAGLQPQVSPIVPAN 70 (75)
Q Consensus 13 ~~~~~~P~l~-----wl~~Y~~~~l~~D~~AGltva~~~IPq~mayA~lAGvpp~~GLYt~~~ 70 (75)
.+.++.|++. |+++|+++++++|++||+|+++++|||+||||.+||+||++|||+++.
T Consensus 5 ~~~~~~~~~~~~~~~wl~~y~~~~l~~D~iAGltv~~~~iPq~mayA~lag~pp~~GLysa~~ 67 (568)
T PRK11660 5 HLFSVRPFSALIDACWKEKYTAARFTRDLIAGITVGIIAIPLAMALAIASGVPPQYGLYTAAV 67 (568)
T ss_pred hhHhhHhhhhHHHHHHHhcCCHHhhhHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 4445555555 999999999999999999999999999999999999999999999864
No 5
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=99.59 E-value=4.5e-16 Score=123.97 Aligned_cols=58 Identities=41% Similarity=0.737 Sum_probs=54.8
Q ss_pred HHhhhccccccCCCCChhhhHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccceeecc
Q psy15561 13 RLKQRLPILKWLPTYDRESLVHDFIAGLTVGLTAIPQGIAYAVVAGLQPQVSPIVPAN 70 (75)
Q Consensus 13 ~~~~~~P~l~wl~~Y~~~~l~~D~~AGltva~~~IPq~mayA~lAGvpp~~GLYt~~~ 70 (75)
++++++|..+|.+.|.++|+++|++||+|+|+++|||+||||.+||+||++|||+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~Dl~AGltva~valP~ama~a~~aGv~p~~GLyas~i 59 (554)
T COG0659 2 RLRSEIPTLKWLPYYFRSWLRGDLLAGLTVAAVALPLAMAFAIAAGVPPEAGLYASIV 59 (554)
T ss_pred cchhhccHHHhccccchhhhHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999874
No 6
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=63.11 E-value=14 Score=27.27 Aligned_cols=35 Identities=29% Similarity=0.545 Sum_probs=29.9
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHHh---CCCCcc
Q psy15561 29 RESLVHDFIAGLTVGLTAIPQGIAYAVVA---GLQPQV 63 (75)
Q Consensus 29 ~~~l~~D~~AGltva~~~IPq~mayA~lA---Gvpp~~ 63 (75)
++.+|+.+.+++.+.+-.+|.|++|+.++ |+++..
T Consensus 9 ~~~f~~G~~~~~Pi~lg~ip~Gl~fG~~a~~~G~s~~e 46 (238)
T COG1296 9 RAEFRQGLKASLPILLGYLPIGLAFGLLAVALGFSPLE 46 (238)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 56899999999999999999999999776 555543
No 7
>PHA02764 hypothetical protein; Provisional
Probab=39.83 E-value=46 Score=26.77 Aligned_cols=29 Identities=21% Similarity=0.157 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhCCCCccc
Q psy15561 36 FIAGLTVGLTAIPQGIAYAVVAGLQPQVS 64 (75)
Q Consensus 36 ~~AGltva~~~IPq~mayA~lAGvpp~~G 64 (75)
+++-+..+++++|.++.||.++..=|..|
T Consensus 49 LLAWLLGGLlALPgAL~YAELGSAmPrAG 77 (399)
T PHA02764 49 LFAILIGAVFEIPLLLMYYKLTTKFPLNG 77 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 35778888899999999998887666664
No 8
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=32.46 E-value=69 Score=18.72 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=18.9
Q ss_pred CCChhhhHHHHHHHHHHHHHHhHHHHHH
Q psy15561 26 TYDRESLVHDFIAGLTVGLTAIPQGIAY 53 (75)
Q Consensus 26 ~Y~~~~l~~D~~AGltva~~~IPq~may 53 (75)
.|+++.|| +.|++.|.+..-.|+..
T Consensus 8 ~YDy~tLr---igGLi~A~vlfi~Gi~i 32 (50)
T PF02038_consen 8 YYDYETLR---IGGLIFAGVLFILGILI 32 (50)
T ss_dssp GGCHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred ccchhHhh---ccchHHHHHHHHHHHHH
Confidence 57787777 58999988887777643
No 9
>COG2928 Uncharacterized conserved protein [Function unknown]
Probab=31.98 E-value=77 Score=23.63 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=20.4
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHHh
Q psy15561 29 RESLVHDFIAGLTVGLTAIPQGIAYAVVA 57 (75)
Q Consensus 29 ~~~l~~D~~AGltva~~~IPq~mayA~lA 57 (75)
+..+|+|+++|+. +.+|.++.+..+.
T Consensus 3 ~~~lk~~fltGLl---vllPlaiT~~vv~ 28 (222)
T COG2928 3 AKRLKKYFLTGLL---VLLPLAITLWVVS 28 (222)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4579999999985 5788888887643
No 10
>PRK05910 type III secretion system protein; Validated
Probab=31.58 E-value=49 Score=27.81 Aligned_cols=29 Identities=14% Similarity=-0.022 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHHHhC
Q psy15561 30 ESLVHDFIAGLTVGLTAIPQGIAYAVVAG 58 (75)
Q Consensus 30 ~~l~~D~~AGltva~~~IPq~mayA~lAG 58 (75)
+..|+|.+||+.+.++.|=-|++.+.+-+
T Consensus 186 KFVkGDAIAGiiI~~INiiGGl~IGv~q~ 214 (584)
T PRK05910 186 RFVKGDAIMSCILLGVNILAATFLGRATG 214 (584)
T ss_pred hhccccHHHHHHHHHHHHHhHHHHHHhHH
Confidence 34899999999999999999988886544
No 11
>PF03779 SPW: SPW repeat; InterPro: IPR005530 A short repeat found in a small family of membrane-bound proteins. This repeat contains a conserved SPW motif in the first of two transmembrane helices [].
Probab=30.68 E-value=65 Score=18.35 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=21.6
Q ss_pred cCCCCCh--hhhHHHHHHHHHHHHHHhHHH
Q psy15561 23 WLPTYDR--ESLVHDFIAGLTVGLTAIPQG 50 (75)
Q Consensus 23 wl~~Y~~--~~l~~D~~AGltva~~~IPq~ 50 (75)
|+-+|+. .-...|++.|+.++++++-..
T Consensus 17 Wvlgf~~~~~~~~~~vi~G~~v~~la~~~~ 46 (51)
T PF03779_consen 17 WVLGFSATAAAAWNNVIVGILVALLALWFL 46 (51)
T ss_pred HHcccCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 7778864 357889999999999885443
No 12
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=30.14 E-value=43 Score=24.31 Aligned_cols=16 Identities=38% Similarity=0.457 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHh
Q psy15561 32 LVHDFIAGLTVGLTAI 47 (75)
Q Consensus 32 l~~D~~AGltva~~~I 47 (75)
=.+|++||+..++++-
T Consensus 186 GsGDvLaGii~~llaq 201 (242)
T PF01256_consen 186 GSGDVLAGIIAGLLAQ 201 (242)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHc
Confidence 3689999999999873
No 13
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=30.01 E-value=33 Score=22.38 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=16.7
Q ss_pred HHHHHHHhHHHHHHHHHhCCC
Q psy15561 40 LTVGLTAIPQGIAYAVVAGLQ 60 (75)
Q Consensus 40 ltva~~~IPq~mayA~lAGvp 60 (75)
++.+.=.+|.++|||.-+|+-
T Consensus 52 Ls~al~~lpvgvAYAvW~GiG 72 (109)
T PRK10650 52 LSQAVKGIDLSVAYALWGGFG 72 (109)
T ss_pred HHHHHhhCchHHHHHHHHHHH
Confidence 455666899999999988864
No 14
>PRK11431 multidrug efflux system protein; Provisional
Probab=30.00 E-value=33 Score=22.19 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=17.5
Q ss_pred HHHHHHHHhHHHHHHHHHhCCCC
Q psy15561 39 GLTVGLTAIPQGIAYAVVAGLQP 61 (75)
Q Consensus 39 Gltva~~~IPq~mayA~lAGvpp 61 (75)
-++.+.-.+|.++|||.-+|+--
T Consensus 45 ~Ls~al~~ip~gvaYAvW~GiG~ 67 (105)
T PRK11431 45 LLAWAMKSLPVGTAYAVWTGIGA 67 (105)
T ss_pred HHHHHHhhCCcHhHHHHHHHHHH
Confidence 35566667999999999888643
No 15
>PRK12792 flhA flagellar biosynthesis protein FlhA; Reviewed
Probab=28.84 E-value=58 Score=27.89 Aligned_cols=27 Identities=30% Similarity=0.233 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15561 30 ESLVHDFIAGLTVGLTAIPQGIAYAVV 56 (75)
Q Consensus 30 ~~l~~D~~AGltva~~~IPq~mayA~l 56 (75)
+-.|+|.+||+.+.++.|=-|+.-+++
T Consensus 199 KFVKGDAIAGiiI~~INiiGGl~IGv~ 225 (694)
T PRK12792 199 KFVRGDAIASLIIIAVNIFGGIIIGVT 225 (694)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999999999888753
No 16
>PRK12720 secretion system apparatus protein SsaV; Provisional
Probab=28.73 E-value=45 Score=28.47 Aligned_cols=26 Identities=38% Similarity=0.400 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15561 31 SLVHDFIAGLTVGLTAIPQGIAYAVV 56 (75)
Q Consensus 31 ~l~~D~~AGltva~~~IPq~mayA~l 56 (75)
-.|+|.+||+.+.++.|=-|++.+.+
T Consensus 194 FVKGDAIAGiiI~~INiiGGl~IGv~ 219 (675)
T PRK12720 194 FVKGDAIAGIIVILVNIIGGIIIGVM 219 (675)
T ss_pred cccccHHHHHHHHHHHHHhhHhhhhh
Confidence 48999999999999999988888754
No 17
>TIGR01399 hrcV type III secretion protein, HrcV family. Members of this family are closely homologous to the flagellar biosynthesis protein FlhA (TIGR01398) and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane.
Probab=27.70 E-value=60 Score=27.68 Aligned_cols=30 Identities=33% Similarity=0.458 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHh-CCC
Q psy15561 31 SLVHDFIAGLTVGLTAIPQGIAYAVVA-GLQ 60 (75)
Q Consensus 31 ~l~~D~~AGltva~~~IPq~mayA~lA-Gvp 60 (75)
-.|+|.+||+.+.++.|=-|+.-+++- |++
T Consensus 182 FVKGDAIAGiiI~~INiiGGl~IGv~q~gms 212 (677)
T TIGR01399 182 FVKGDAIAGIIIVLINIIGGISIGVTQHGMS 212 (677)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 489999999999999999888887543 344
No 18
>PRK15337 type III secretion system protein InvA; Provisional
Probab=25.76 E-value=57 Score=27.89 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15561 31 SLVHDFIAGLTVGLTAIPQGIAYAVV 56 (75)
Q Consensus 31 ~l~~D~~AGltva~~~IPq~mayA~l 56 (75)
-.|+|.+||+.+.++.|=-|+..+.+
T Consensus 192 FVKGDAIAGiiI~~INiiGGl~IGv~ 217 (686)
T PRK15337 192 FIKGDAIAGIIIIFVNLIGGISVGMT 217 (686)
T ss_pred cccccHHHHHHHHHHHHHHhHhhhhh
Confidence 48999999999999999988887754
No 19
>PF14378 PAP2_3: PAP2 superfamily
Probab=25.57 E-value=58 Score=22.07 Aligned_cols=16 Identities=50% Similarity=0.621 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHh
Q psy15561 32 LVHDFIAGLTVGLTAI 47 (75)
Q Consensus 32 l~~D~~AGltva~~~I 47 (75)
-.=|++||+.++.+++
T Consensus 174 Y~iDv~aG~~la~~~~ 189 (191)
T PF14378_consen 174 YVIDVIAGAALALLAI 189 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4558888888887764
No 20
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=25.47 E-value=46 Score=21.96 Aligned_cols=22 Identities=41% Similarity=0.756 Sum_probs=17.0
Q ss_pred HHHHHHHHhHHHHHHHHHhCCC
Q psy15561 39 GLTVGLTAIPQGIAYAVVAGLQ 60 (75)
Q Consensus 39 Gltva~~~IPq~mayA~lAGvp 60 (75)
=++.|+=.+|.+.|||.-+|+-
T Consensus 46 ~Ls~alk~ipvgvAYAiW~GiG 67 (106)
T COG2076 46 LLSLALKTIPLGVAYAIWTGIG 67 (106)
T ss_pred HHHHHHhhCchHHHHHHHHHHH
Confidence 3455666789999999988864
No 21
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase. This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family.
Probab=25.17 E-value=59 Score=24.98 Aligned_cols=18 Identities=39% Similarity=0.394 Sum_probs=15.0
Q ss_pred HHHHHHhHHHHHHHHHhC
Q psy15561 41 TVGLTAIPQGIAYAVVAG 58 (75)
Q Consensus 41 tva~~~IPq~mayA~lAG 58 (75)
+--..+|||.||.+.|+-
T Consensus 251 ~~~fcaip~~mAi~TL~~ 268 (336)
T TIGR01559 251 IFNFCAIPQVMAIATLAL 268 (336)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 456889999999998874
No 22
>TIGR01398 FlhA flagellar biosynthesis protein FlhA. This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model.
Probab=24.83 E-value=68 Score=27.39 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHH
Q psy15561 30 ESLVHDFIAGLTVGLTAIPQGIAYAV 55 (75)
Q Consensus 30 ~~l~~D~~AGltva~~~IPq~mayA~ 55 (75)
+-.|+|.+||+.+.++.|=-|+..+.
T Consensus 185 KFVKGDAIAGiiI~~INiiGGl~IGv 210 (678)
T TIGR01398 185 KFVKGDAIAGIIITLINIIGGLIIGV 210 (678)
T ss_pred ccccccHHHHHHHHHHHHHHHHhhhh
Confidence 34899999999999999998888775
No 23
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=23.86 E-value=1.4e+02 Score=19.79 Aligned_cols=54 Identities=11% Similarity=0.208 Sum_probs=27.7
Q ss_pred hhccccccCCCCChhhhHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccceeeccCCCC
Q psy15561 16 QRLPILKWLPTYDRESLVHDFIAGLTVGLTAIPQGIAYAVVAGLQPQVSPIVPANFSPS 74 (75)
Q Consensus 16 ~~~P~l~wl~~Y~~~~l~~D~~AGltva~~~IPq~mayA~lAGvpp~~GLYt~~~~~~~ 74 (75)
+++|+..+- ..+..++..+.-.|..-|. .+++.|.-.|+|+-.-+|-++-+|+.
T Consensus 53 ~i~pIyq~~-~~~~~~~~~~~~~G~~dA~----~A~~~A~~lG~p~gt~IYfavD~d~~ 106 (136)
T PF08924_consen 53 RIFPIYQGG-GRETSDFTYGYAQGVADAR----DAVAAARALGFPAGTPIYFAVDYDAT 106 (136)
T ss_dssp EEEEEE---------S-B--HHHHHHHHH----HHHHHHHHTT--SS-EEEEE--TS-B
T ss_pred EEEEEEecc-cccccccccHHHHHHHHHH----HHHHHHHHcCCCCCCEEEEEeecCCC
Confidence 678887765 2233445555555555554 67788888999999999999998875
No 24
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=23.32 E-value=45 Score=21.62 Aligned_cols=22 Identities=45% Similarity=0.664 Sum_probs=16.6
Q ss_pred HHHHHHHHhHHHHHHHHHhCCC
Q psy15561 39 GLTVGLTAIPQGIAYAVVAGLQ 60 (75)
Q Consensus 39 Gltva~~~IPq~mayA~lAGvp 60 (75)
-++.+.=.+|.++|||.-+|+-
T Consensus 46 ~l~~al~~ipl~iAYavw~GlG 67 (110)
T PRK09541 46 LLAQTLAYIPTGIAYAIWSGVG 67 (110)
T ss_pred HHHHHHhhCCchhHHHHHHHHH
Confidence 3455566799999999988754
No 25
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=22.47 E-value=62 Score=24.42 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhH
Q psy15561 33 VHDFIAGLTVGLTAIP 48 (75)
Q Consensus 33 ~~D~~AGltva~~~IP 48 (75)
.+|+++|++.++++--
T Consensus 224 tGDvLaGii~alLAq~ 239 (284)
T COG0063 224 TGDVLAGIIGALLAQG 239 (284)
T ss_pred chHHHHHHHHHHHhCC
Confidence 6899999999998754
No 26
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.27 E-value=83 Score=21.37 Aligned_cols=15 Identities=40% Similarity=0.744 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHH
Q psy15561 31 SLVHDFIAGLTVGLT 45 (75)
Q Consensus 31 ~l~~D~~AGltva~~ 45 (75)
.+..|+++|+.|+++
T Consensus 47 klssefIsGilVGa~ 61 (116)
T COG5336 47 KLSSEFISGILVGAG 61 (116)
T ss_pred HHHHHHHHHHHHHHH
Confidence 688999999999875
No 27
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=21.02 E-value=54 Score=20.19 Aligned_cols=22 Identities=41% Similarity=0.679 Sum_probs=10.5
Q ss_pred HHHHHHHhHHHHHHHHHhCCCC
Q psy15561 40 LTVGLTAIPQGIAYAVVAGLQP 61 (75)
Q Consensus 40 ltva~~~IPq~mayA~lAGvpp 61 (75)
+..+.-.+|.++||+..+|+-.
T Consensus 46 l~~al~~lp~~vaYavw~g~g~ 67 (93)
T PF00893_consen 46 LSLALKKLPLSVAYAVWTGLGI 67 (93)
T ss_dssp HHHHH-------HHHHHHHHHH
T ss_pred HHHHHhhcchHHHHHHHHHHHH
Confidence 4456667899999999887643
No 28
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=20.96 E-value=1.4e+02 Score=16.36 Aligned_cols=19 Identities=21% Similarity=0.344 Sum_probs=9.5
Q ss_pred hhHHHHH-------HHHHHHHHHhHH
Q psy15561 31 SLVHDFI-------AGLTVGLTAIPQ 49 (75)
Q Consensus 31 ~l~~D~~-------AGltva~~~IPq 49 (75)
.=|+|+| +++-++.+++|.
T Consensus 9 ~~RRdFL~~at~~~gavG~~~~a~Pf 34 (41)
T PF10399_consen 9 PTRRDFLTIATSAVGAVGAAAAAWPF 34 (41)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466766 444444455553
No 29
>PRK06012 flhA flagellar biosynthesis protein FlhA; Validated
Probab=20.85 E-value=56 Score=27.79 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15561 30 ESLVHDFIAGLTVGLTAIPQGIAYAVV 56 (75)
Q Consensus 30 ~~l~~D~~AGltva~~~IPq~mayA~l 56 (75)
+-.|+|.+||+.+.++.|=-|++.+.+
T Consensus 202 KFVkGDAIAgiiI~~iNiiGGl~iGv~ 228 (697)
T PRK06012 202 KFVKGDAIAGILITVINIIGGLIIGVV 228 (697)
T ss_pred ccccccHHHHHHHHHHHHHhhhheeeh
Confidence 348999999999999999988877743
No 30
>PF04217 DUF412: Protein of unknown function, DUF412; InterPro: IPR007334 This family consists of bacterial uncharacterised proteins.
Probab=20.42 E-value=40 Score=23.49 Aligned_cols=24 Identities=38% Similarity=0.324 Sum_probs=19.2
Q ss_pred HHHHhHHHHHHHHHhCCCCcccce
Q psy15561 43 GLTAIPQGIAYAVVAGLQPQVSPI 66 (75)
Q Consensus 43 a~~~IPq~mayA~lAGvpp~~GLY 66 (75)
+.-..||+++.|+.+--=|..|||
T Consensus 58 ~~~~lp~ai~~aLFalSLPlQGl~ 81 (143)
T PF04217_consen 58 GGQALPQAIATALFALSLPLQGLY 81 (143)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345689999999888877888887
Done!