Query psy15561
Match_columns 75
No_of_seqs 111 out of 1033
Neff 4.7
Searched_HMMs 29240
Date Sat Aug 17 00:26:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15561.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15561hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zxe_G FXYD10, phospholemman-l 24.5 84 0.0029 18.9 3.3 25 26-53 13-37 (74)
2 2jp3_A FXYD domain-containing 20.9 1.1E+02 0.0038 18.0 3.3 26 26-54 11-36 (67)
3 2jo1_A Phospholemman; FXYD1, N 20.8 1.5E+02 0.005 17.7 3.8 26 26-54 10-35 (72)
4 1tlq_A Hypothetical protein YP 15.0 92 0.0031 21.7 2.2 17 30-46 140-156 (189)
5 3qe7_A Uracil permease; uracil 14.0 90 0.0031 23.3 2.1 39 31-69 13-51 (429)
6 1y9i_A Low temperature require 12.9 1.2E+02 0.0039 20.9 2.2 34 13-46 119-156 (178)
7 1rfz_A Hypothetical protein AP 12.2 1.3E+02 0.0043 20.5 2.2 34 13-46 121-158 (168)
8 3n2f_G Na+/K+ ATPase gamma sub 11.7 1.3E+02 0.0046 15.0 1.7 23 26-51 4-26 (31)
9 1bts_A BAND 3 anion transport 10.4 1E+02 0.0035 14.8 0.9 11 50-60 14-24 (26)
10 2p7v_A Regulator of sigma D; R 10.1 1.5E+02 0.0052 19.9 2.0 11 52-62 32-42 (158)
No 1
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=24.49 E-value=84 Score=18.89 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=19.7
Q ss_pred CCChhhhHHHHHHHHHHHHHHhHHHHHH
Q psy15561 26 TYDRESLVHDFIAGLTVGLTAIPQGIAY 53 (75)
Q Consensus 26 ~Y~~~~l~~D~~AGltva~~~IPq~may 53 (75)
.|+++.|| +.||+.|.+..-.||..
T Consensus 13 ~YDY~tLR---igGLifA~vLfi~GI~i 37 (74)
T 2zxe_G 13 TYDYYRLR---VVGLIVAAVLCVIGIII 37 (74)
T ss_dssp CCCHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred ccchHHhe---eccchhHHHHHHHHHHH
Confidence 58888887 58999998888777654
No 2
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=20.87 E-value=1.1e+02 Score=17.99 Aligned_cols=26 Identities=46% Similarity=0.538 Sum_probs=19.5
Q ss_pred CCChhhhHHHHHHHHHHHHHHhHHHHHHH
Q psy15561 26 TYDRESLVHDFIAGLTVGLTAIPQGIAYA 54 (75)
Q Consensus 26 ~Y~~~~l~~D~~AGltva~~~IPq~mayA 54 (75)
.|+++.|| +.||+.|.+..-.|+..-
T Consensus 11 ~YDY~tLR---igGLifA~vLfi~GI~ii 36 (67)
T 2jp3_A 11 YYDWESLQ---LGGLIFGGLLCIAGIALA 36 (67)
T ss_dssp GGGGHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred ccchHHhe---ecchhhHHHHHHHHHHHH
Confidence 47777777 589999988887776543
No 3
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=20.83 E-value=1.5e+02 Score=17.74 Aligned_cols=26 Identities=38% Similarity=0.484 Sum_probs=19.8
Q ss_pred CCChhhhHHHHHHHHHHHHHHhHHHHHHH
Q psy15561 26 TYDRESLVHDFIAGLTVGLTAIPQGIAYA 54 (75)
Q Consensus 26 ~Y~~~~l~~D~~AGltva~~~IPq~mayA 54 (75)
.|+++.|+ +.||+.|.+..-.||..-
T Consensus 10 ~YDY~tLR---iGGLifA~vLfi~GI~ii 35 (72)
T 2jo1_A 10 TYDYQSLQ---IGGLVIAGILFILGILIV 35 (72)
T ss_dssp GCSTHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred ccchHHhh---ccchHHHHHHHHHHHHHH
Confidence 57888777 589999988887777543
No 4
>1tlq_A Hypothetical protein YPJQ; structural genomics, NYSGXRC, T1519 protein structure initiative, NEW YORK SGX research center structural genomics; 2.40A {Bacillus subtilis} SCOP: a.195.1.1
Probab=15.02 E-value=92 Score=21.73 Aligned_cols=17 Identities=18% Similarity=0.462 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHH
Q psy15561 30 ESLVHDFIAGLTVGLTA 46 (75)
Q Consensus 30 ~~l~~D~~AGltva~~~ 46 (75)
..|..|++||+..|+.+
T Consensus 140 ~tFLDDiVgaiaAaaaS 156 (189)
T 1tlq_A 140 HTFLDDIVAALAAAAAS 156 (189)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHH
Confidence 46999999999888754
No 5
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=14.04 E-value=90 Score=23.35 Aligned_cols=39 Identities=10% Similarity=0.133 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccceeec
Q psy15561 31 SLVHDFIAGLTVGLTAIPQGIAYAVVAGLQPQVSPIVPA 69 (75)
Q Consensus 31 ~l~~D~~AGltva~~~IPq~mayA~lAGvpp~~GLYt~~ 69 (75)
.+++.+++|++-.+.++.-.++-..+-|+||..+++++.
T Consensus 13 ~~~~~i~~GlQh~lam~~~~v~~PlilGl~~~~~l~~ag 51 (429)
T 3qe7_A 13 PLLQTIPLSLQHLFAMFGATVLVPVLFHINPATVLLFNG 51 (429)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHhCCCHHHHHHHHH
Confidence 378899999988776666666655555888887776653
No 6
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=12.87 E-value=1.2e+02 Score=20.90 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=22.3
Q ss_pred HHhhhcc-ccccCCCCC---hhhhHHHHHHHHHHHHHH
Q psy15561 13 RLKQRLP-ILKWLPTYD---RESLVHDFIAGLTVGLTA 46 (75)
Q Consensus 13 ~~~~~~P-~l~wl~~Y~---~~~l~~D~~AGltva~~~ 46 (75)
++...-| +++|+.+-. +.-+..|++||+..+++.
T Consensus 119 ~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~ 156 (178)
T 1y9i_A 119 YIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAAS 156 (178)
T ss_dssp HHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHH
T ss_pred HHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHH
Confidence 3444444 346775432 346999999999888754
No 7
>1rfz_A Hypothetical protein APC35681; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.80A {Geobacillus stearothermophilus} SCOP: a.195.1.1
Probab=12.18 E-value=1.3e+02 Score=20.48 Aligned_cols=34 Identities=15% Similarity=0.439 Sum_probs=21.6
Q ss_pred HHhhhcc-ccccCCCC---ChhhhHHHHHHHHHHHHHH
Q psy15561 13 RLKQRLP-ILKWLPTY---DRESLVHDFIAGLTVGLTA 46 (75)
Q Consensus 13 ~~~~~~P-~l~wl~~Y---~~~~l~~D~~AGltva~~~ 46 (75)
++...-| .++|+.+- ...-+..|++||+..+++.
T Consensus 121 ~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~ 158 (168)
T 1rfz_A 121 YIDKQKPGILQYLNDKSTGKCNTFLDDIVGAIAAAASS 158 (168)
T ss_dssp HHHHHCCTHHHHHHCSSSSCCCTTHHHHHHHHHHHHHH
T ss_pred HHHhccchhHHHhhcccCCCCcchHHHHHHHHHHHHHH
Confidence 3334444 34666432 2356999999999888764
No 8
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=11.71 E-value=1.3e+02 Score=14.99 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=14.7
Q ss_pred CCChhhhHHHHHHHHHHHHHHhHHHH
Q psy15561 26 TYDRESLVHDFIAGLTVGLTAIPQGI 51 (75)
Q Consensus 26 ~Y~~~~l~~D~~AGltva~~~IPq~m 51 (75)
.|+++.+| +.|++.|.+..-.|+
T Consensus 4 ~yDy~tLr---igGLi~a~vLfi~gi 26 (31)
T 3n2f_G 4 YYDYETVR---NGGLIFAALAFIVGL 26 (31)
T ss_dssp CCCHHHHH---HHHTTTHHHHHHHHH
T ss_pred CCChHHHh---hcchhHHHHHHHHHH
Confidence 47777776 467777766654444
No 9
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=10.38 E-value=1e+02 Score=14.75 Aligned_cols=11 Identities=27% Similarity=0.640 Sum_probs=5.9
Q ss_pred HHHHHHHhCCC
Q psy15561 50 GIAYAVVAGLQ 60 (75)
Q Consensus 50 ~mayA~lAGvp 60 (75)
|+.|++++|=|
T Consensus 14 Gi~f~lf~gQP 24 (26)
T 1bts_A 14 GILFALLGAXX 24 (26)
T ss_dssp HHHHHHTTC--
T ss_pred HHHHHHHhccc
Confidence 45677766654
No 10
>2p7v_A Regulator of sigma D; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli}
Probab=10.06 E-value=1.5e+02 Score=19.88 Aligned_cols=11 Identities=36% Similarity=0.763 Sum_probs=10.2
Q ss_pred HHHHHhCCCCc
Q psy15561 52 AYAVVAGLQPQ 62 (75)
Q Consensus 52 ayA~lAGvpp~ 62 (75)
+|..++|++|.
T Consensus 32 ~Yc~L~gl~P~ 42 (158)
T 2p7v_A 32 AYYNLVGIKPG 42 (158)
T ss_dssp HHHHHHSCCCC
T ss_pred HHHHHhCCCCC
Confidence 89999999997
Done!