Query psy15561
Match_columns 75
No_of_seqs 111 out of 1033
Neff 4.7
Searched_HMMs 13730
Date Sat Aug 17 00:26:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15561.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15561hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5c_ f.23.29.1 (C:) Sec-bet 55.1 5.9 0.00043 19.0 2.7 28 27-54 3-30 (32)
2 d2ax3a1 c.72.1.4 (A:212-489) H 23.5 20 0.0014 23.4 2.1 16 31-46 216-231 (278)
3 d1kyha_ c.72.1.4 (A:) Hypothet 22.2 22 0.0016 23.4 2.1 17 31-47 211-227 (275)
4 d1wpga4 f.33.1.1 (A:1-124,A:24 19.1 17 0.0012 25.2 1.0 25 30-54 175-199 (472)
5 d1tlqa_ a.195.1.1 (A:) Hypothe 17.5 33 0.0024 21.7 2.1 26 21-46 124-151 (161)
6 d1tksa_ d.115.1.2 (A:) 3,4-dih 16.5 55 0.004 20.9 3.1 20 50-69 147-166 (202)
7 d3cuma1 a.100.1.1 (A:163-296) 14.1 1.1E+02 0.0077 17.1 3.7 31 31-63 9-39 (134)
8 d1vpda1 a.100.1.1 (A:164-296) 13.7 1.1E+02 0.008 17.1 3.7 31 31-63 9-39 (133)
9 d1y9ia_ a.195.1.1 (A:) Low tem 13.1 54 0.0039 20.6 2.2 27 20-46 122-151 (159)
10 d2ajra1 c.72.1.1 (A:1-319) Put 13.0 93 0.0068 19.6 3.5 27 32-58 258-289 (319)
No 1
>d1rh5c_ f.23.29.1 (C:) Sec-beta subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=55.07 E-value=5.9 Score=19.02 Aligned_cols=28 Identities=18% Similarity=0.427 Sum_probs=21.5
Q ss_pred CChhhhHHHHHHHHHHHHHHhHHHHHHH
Q psy15561 27 YDRESLVHDFIAGLTVGLTAIPQGIAYA 54 (75)
Q Consensus 27 Y~~~~l~~D~~AGltva~~~IPq~mayA 54 (75)
|+.-..+.+.+-|+|+|.+.|-.-+.|+
T Consensus 3 fskirvkpehvigvtvafviieailtyg 30 (32)
T d1rh5c_ 3 FSKIRVKPEHVIGVTVAFVIIEAILTYG 30 (32)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccceeeccceEEEEEEehhhHHHHHhhc
Confidence 4444577888999999999887766664
No 2
>d2ax3a1 c.72.1.4 (A:212-489) Hypothetical protein TM0922, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=23.51 E-value=20 Score=23.42 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHH
Q psy15561 31 SLVHDFIAGLTVGLTA 46 (75)
Q Consensus 31 ~l~~D~~AGltva~~~ 46 (75)
-=.+|++||+..+.++
T Consensus 216 ~GtGDvLaGiIaallA 231 (278)
T d2ax3a1 216 GGSGDVLTGMIAGFIA 231 (278)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHH
Confidence 3579999999999987
No 3
>d1kyha_ c.72.1.4 (A:) Hypothetical protein YxkO {Bacillus subtilis [TaxId: 1423]}
Probab=22.16 E-value=22 Score=23.36 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHh
Q psy15561 31 SLVHDFIAGLTVGLTAI 47 (75)
Q Consensus 31 ~l~~D~~AGltva~~~I 47 (75)
-=.+|++||+..+.++-
T Consensus 211 ~GsGDvLaGiIa~~lAq 227 (275)
T d1kyha_ 211 GGTGDTLTGMILGMLCC 227 (275)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHc
Confidence 35799999999999873
No 4
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=19.09 E-value=17 Score=25.21 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHH
Q psy15561 30 ESLVHDFIAGLTVGLTAIPQGIAYA 54 (75)
Q Consensus 30 ~~l~~D~~AGltva~~~IPq~mayA 54 (75)
+.+..-++.++++++.+||+|+-.+
T Consensus 175 ~~~~~~~~~ai~l~V~~iPEgLp~~ 199 (472)
T d1wpga4 175 RGAIYYFKIAVALAVAAIPEGLPAV 199 (472)
T ss_dssp SCGGGHHHHHHHHHHHHSCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhChhhHHHH
Confidence 4566778899999999999886443
No 5
>d1tlqa_ a.195.1.1 (A:) Hypothetical protein YpjQ {Bacillus subtilis [TaxId: 1423]}
Probab=17.53 E-value=33 Score=21.69 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=18.4
Q ss_pred cccCCCCC--hhhhHHHHHHHHHHHHHH
Q psy15561 21 LKWLPTYD--RESLVHDFIAGLTVGLTA 46 (75)
Q Consensus 21 l~wl~~Y~--~~~l~~D~~AGltva~~~ 46 (75)
++|+.+.+ +.-+..|++||+..++.+
T Consensus 124 i~~ld~~~~g~gv~lDDivagi~A~~~s 151 (161)
T d1tlqa_ 124 IKELDESPDGIHTFLDDIVAALAAAAAS 151 (161)
T ss_dssp HHHTSSSCSCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCcceeHHHHHHHHHHHHHH
Confidence 46665543 346999999999887643
No 6
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Candida albicans [TaxId: 5476]}
Probab=16.55 E-value=55 Score=20.87 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=13.5
Q ss_pred HHHHHHHhCCCCcccceeec
Q psy15561 50 GIAYAVVAGLQPQVSPIVPA 69 (75)
Q Consensus 50 ~mayA~lAGvpp~~GLYt~~ 69 (75)
++..+.+||+.|+.-+---+
T Consensus 147 svdL~~lAGl~P~avi~Eil 166 (202)
T d1tksa_ 147 AVQLSTLAGLQPAGVICELV 166 (202)
T ss_dssp HHHHHHHTTSCSBEEEEEBB
T ss_pred HHHHHHhcCCCccEEEEEEE
Confidence 45678999999955443333
No 7
>d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=14.09 E-value=1.1e+02 Score=17.11 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcc
Q psy15561 31 SLVHDFIAGLTVGLTAIPQGIAYAVVAGLQPQV 63 (75)
Q Consensus 31 ~l~~D~~AGltva~~~IPq~mayA~lAGvpp~~ 63 (75)
++-...+.+..+.++ -++|++|.-+|+++..
T Consensus 9 Kl~~N~l~~~~~~a~--aEal~la~~~Gld~~~ 39 (134)
T d3cuma1 9 KVCNNQLLAVLMIGT--AEAMALGVANGLEAKV 39 (134)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHhCCCHHH
Confidence 456667766665554 7999999999998764
No 8
>d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}
Probab=13.68 E-value=1.1e+02 Score=17.10 Aligned_cols=31 Identities=23% Similarity=0.493 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcc
Q psy15561 31 SLVHDFIAGLTVGLTAIPQGIAYAVVAGLQPQV 63 (75)
Q Consensus 31 ~l~~D~~AGltva~~~IPq~mayA~lAGvpp~~ 63 (75)
++...++.+..+..+ =+++++|.-+|++|..
T Consensus 9 Kl~nN~l~~~~~~~~--aEal~la~~~Gid~~~ 39 (133)
T d1vpda1 9 KLANQVIVALNIAAM--SEALTLATKAGVNPDL 39 (133)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHcCCCHHH
Confidence 566777777766554 6999999999999864
No 9
>d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein, LtrC {Listeria monocytogenes [TaxId: 1639]}
Probab=13.08 E-value=54 Score=20.56 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=19.3
Q ss_pred ccccC-CCCC--hhhhHHHHHHHHHHHHHH
Q psy15561 20 ILKWL-PTYD--RESLVHDFIAGLTVGLTA 46 (75)
Q Consensus 20 ~l~wl-~~Y~--~~~l~~D~~AGltva~~~ 46 (75)
+++|+ ++.+ +.-+..|++||+..++.+
T Consensus 122 ~i~~ld~~~~g~~gv~lDDivagi~Aa~~s 151 (159)
T d1y9ia_ 122 ILAKLNEHDGIAVHTFLDDIVGAIAAAAAS 151 (159)
T ss_dssp HHHHTTCCCSSCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCccchHHHHHHHHHHHHHH
Confidence 45677 3443 367999999999887653
No 10
>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga maritima [TaxId: 2336]}
Probab=12.96 E-value=93 Score=19.64 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=18.4
Q ss_pred hHHHH-HHHHHHHHH----HhHHHHHHHHHhC
Q psy15561 32 LVHDF-IAGLTVGLT----AIPQGIAYAVVAG 58 (75)
Q Consensus 32 l~~D~-~AGltva~~----~IPq~mayA~lAG 58 (75)
=-+|. +||+..+.+ .+.+++.||..++
T Consensus 258 GAGDaf~ag~i~~~l~~g~~~~~a~~~a~a~a 289 (319)
T d2ajra1 258 GAGDAYVAGMVYYFIKHGANFLEMAKFGFASA 289 (319)
T ss_dssp THHHHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 46785 588887754 3678888886554
Done!