RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15561
(75 letters)
>gnl|CDD|205965 pfam13792, Sulfate_tra_GLY, Sulfate transporter N-terminal domain
with GLY motif. This domain is found usually at the
N-terminus of sulfate-transporter proteins. It carries
a highly conserved GLY sequence motif, but the function
of the domain is not known.
Length = 83
Score = 72.8 bits (180), Expect = 6e-19
Identities = 29/46 (63%), Positives = 33/46 (71%)
Query: 18 LPILKWLPTYDRESLVHDFIAGLTVGLTAIPQGIAYAVVAGLQPQV 63
LPIL+WLP Y R L D IAGLTV L IPQG+AYA++AGL P
Sbjct: 1 LPILQWLPKYSRSWLKGDLIAGLTVALVLIPQGMAYALLAGLPPVY 46
>gnl|CDD|162054 TIGR00815, sulP, high affinity sulphate transporter 1. The SulP
family is a large and ubiquitous family with over 30
sequenced members derived from bacteria, fungi, plants
and animals. Many organisms including Bacillus
subtilis, Synechocystis sp, Saccharomyces cerevisiae,
Arabidopsis thaliana and Caenorhabditis elegans possess
multiple SulP family paralogues. Many of these proteins
are functionally characterized, and all are sulfate
uptake transporters. Some transport their substrate
with high affinities, while others transport it with
relatively low affinities. Most function by SO42-
:H+symport, but SO42- :HCO3- antiport has been reported
for the rat protein (spP45380). The bacterial proteins
vary in size from 434 residues to 566 residues with one
exception, a Mycobacterium tuberculosis protein with
784 residues. The eukaryotic proteins vary in size from
611 residues to 893 residues with one exception, a
protein designated "early nodulin 70 protein" from
Glycine max which is reported to be of 485 residues.
Thus, the eukaryotic proteins are almost without
exception larger than the prokaryotic proteins. These
proteins exhibit 10-13 putative transmembrane a-helical
spanners (TMSs) depending on the protein. The
phylogenetic tree for the SulP family reveals five
principal branches. Three of these are bacterial
specific as follows: one bears a single protein from M.
tuberculosis; a second bears two proteins, one from M.
tuberculosis, the other from Synechocystis sp, and the
third bears all remaining prokaryotic proteins. The
remaining two clusters bear only eukaryotic proteins
with the animal proteins all localized to one branch
and the plant and fungal proteins localized to the
other. The generalized transport reactions catalyzed by
SulP family proteins are: (1) SO42- (out) + nH+ (out)
--> SO42- (in) + nH+ (in). (2) SO42- (out) + nHCO3-
(in) SO42- (in) + nHCO3- (out) [Transport and binding
proteins, Anions].
Length = 563
Score = 63.1 bits (154), Expect = 1e-13
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 19 PILKWLPTYDRESLVHDFIAGLTVGLTAIPQGIAYAVVAGLQPQVS 64
P+L+WLP Y + D +AGLTVG+ IPQ +AYA++AGL P
Sbjct: 1 PVLRWLPHYRLKKFKGDLMAGLTVGILLIPQAMAYAILAGLSPIYG 46
>gnl|CDD|223732 COG0659, SUL1, Sulfate permease and related transporters (MFS
superfamily) [Inorganic ion transport and metabolism].
Length = 554
Score = 57.3 bits (139), Expect = 2e-11
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 13 RLKQRLPILKWLPTYDRESLVHDFIAGLTVGLTAIPQGIAYAVVAGLQPQV 63
RL+ +P LKWLP Y R L D +AGLTV A+P +A+A+ AG+ P+
Sbjct: 2 RLRSEIPTLKWLPYYFRSWLRGDLLAGLTVAAVALPLAMAFAIAAGVPPEA 52
>gnl|CDD|183265 PRK11660, PRK11660, putative transporter; Provisional.
Length = 568
Score = 41.1 bits (97), Expect = 7e-06
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 23 WLPTYDRESLVHDFIAGLTVGLTAIPQGIAYAVVAGLQPQ 62
W Y D IAG+TVG+ AIP +A A+ +G+ PQ
Sbjct: 20 WKEKYTAARFTRDLIAGITVGIIAIPLAMALAIASGVPPQ 59
>gnl|CDD|236828 PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit;
Provisional.
Length = 758
Score = 26.7 bits (59), Expect = 1.1
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 42 VGLTAIPQGIAYAVVAGLQPQV 63
VG TAI +G+A+ +V G P+V
Sbjct: 218 VGKTAIAEGLAWRIVQGDVPEV 239
>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ
chaperones [Posttranslational modification, protein
turnover, chaperones].
Length = 786
Score = 26.5 bits (59), Expect = 1.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 42 VGLTAIPQGIAYAVVAG 58
VG TAI +G+A +V G
Sbjct: 202 VGKTAIVEGLAQRIVNG 218
>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
plasma membrane of eukaryotes , out of the cell. In some
organisms, this type of pump may also be found in
vacuolar membranes. In humans and mice, at least, there
are multiple isoforms of the PMCA pump with overlapping
but not redundant functions. Accordingly, there are no
human diseases linked to PMCA defects, although
alterations of PMCA function do elicit physiological
effects. The calcium P-type ATPases have been
characterized as Type IIB based on a phylogenetic
analysis which distinguishes this group from the Type
IIA SERCA calcium pump. A separate analysis divides Type
IIA into sub-types (SERCA and PMR1) which are modelled
by TIGR01116 and TIGR01522. This model is well separated
from those.
Length = 944
Score = 26.3 bits (58), Expect = 1.7
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 16 QRLPILKWLPTYDRESLVHDFIAGLTVGLTAIPQGIAYAVVAGL 59
+ + D ++ + FI +T+ + A+P+G+ AV L
Sbjct: 309 RIIRGDGRDTEEDAQTFLDHFIIAVTIVVVAVPEGLPLAVTIAL 352
>gnl|CDD|235752 PRK06251, PRK06251, V-type ATP synthase subunit K; Validated.
Length = 102
Score = 25.5 bits (56), Expect = 2.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 38 AGLTVGLTAIPQGIAYAVVA 57
AGL VGL AI GIA + A
Sbjct: 40 AGLAVGLAAIGAGIAVGMAA 59
>gnl|CDD|215096 PLN00192, PLN00192, aldehyde oxidase.
Length = 1344
Score = 25.4 bits (56), Expect = 3.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 57 AGLQPQVSPIVPANF 71
AG+ P +SPI+P N
Sbjct: 883 AGISPDISPIMPRNI 897
>gnl|CDD|219891 pfam08538, DUF1749, Protein of unknown function (DUF1749). This
is a plant and fungal family of unknown function. This
family contains many hypothetical proteins.
Length = 303
Score = 24.7 bits (54), Expect = 5.6
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Query: 36 FIAGLTVGLTAIP--QGIAYA 54
FI GL GL +P Q +A A
Sbjct: 39 FIGGLGDGLLTVPYVQPLADA 59
>gnl|CDD|226220 COG3696, COG3696, Putative silver efflux pump [Inorganic ion
transport and metabolism].
Length = 1027
Score = 24.2 bits (53), Expect = 8.6
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 14 LKQRLPI-LKWLPTYDRESLVHDFIAGLT 41
LK+ LP +K + TYDR L+ I ++
Sbjct: 309 LKKSLPEGVKIVTTYDRSELIDKAIDTVS 337
>gnl|CDD|234012 TIGR02784, addA_alphas, double-strand break repair helicase AddA,
alphaproteobacterial type. AddAB, also called RexAB,
substitutes for RecBCD in several bacterial lineages.
These DNA recombination proteins act before synapse and
are particularly important for DNA repair of
double-stranded breaks by homologous recombination. The
term AddAB is used broadly, with AddA homologous between
the alphaproteobacteria (as modeled here) and the
Firmicutes, while the partner AddB proteins show no
strong homology across the two groups of species [DNA
metabolism, DNA replication, recombination, and repair].
Length = 1135
Score = 24.3 bits (53), Expect = 8.8
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 10 SSQRLKQRLPILKWLPTYDRESLVHDFIAGL 40
L +L+ + +F A L
Sbjct: 678 REAEFAATLAVLRDWLSLADFLTPFEFYARL 708
>gnl|CDD|217540 pfam03408, Foamy_virus_ENV, Foamy virus envelope protein.
Expression of the envelope (Env) glycoprotein is
essential for viral particle egress. This feature is
unique to the Spumavirinae, a subclass of the
Retroviridae.
Length = 985
Score = 24.0 bits (52), Expect = 9.5
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 3 GPPMTWLSSQRLKQRLPILKWLPTYDRESLVHDFIAGLTVGLTAIPQGIAYAVVAGLQPQ 62
GP + W + + + L R +H + V +T+IPQG+ Y +P
Sbjct: 99 GPVIDWNVTNQAVYQPLNTPRLARSRR--AIHPAPKYVEVNMTSIPQGVFY------EPH 150
Query: 63 VSPIV 67
PI+
Sbjct: 151 PEPII 155
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.427
Gapped
Lambda K H
0.267 0.0887 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,988,235
Number of extensions: 307915
Number of successful extensions: 379
Number of sequences better than 10.0: 1
Number of HSP's gapped: 379
Number of HSP's successfully gapped: 24
Length of query: 75
Length of database: 10,937,602
Length adjustment: 45
Effective length of query: 30
Effective length of database: 8,941,672
Effective search space: 268250160
Effective search space used: 268250160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (23.9 bits)