RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15561
         (75 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.6 bits (71), Expect = 0.013
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 18  LPILKWL----PTYDRESLVHDFIAGLTVGLTAIPQGIAYAVVAGLQP 61
           L IL+WL     T D++ L+   I+   +G+  +   +  A + G  P
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260


>2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd;
           deoxyguanosinetriphosphate triphsphohydrolase,
           pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas
           syringae PV}
          Length = 451

 Score = 26.2 bits (58), Expect = 0.88
 Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 3/34 (8%)

Query: 11  SQRLKQRLPILKWLPT---YDRESLVHDFIAGLT 41
            +R+   L      P    +     + DFIAG+T
Sbjct: 394 HRRILDLLGNSAPDPKAPLHASFLRMIDFIAGMT 427


>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
           mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
           SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
          Length = 758

 Score = 26.1 bits (58), Expect = 0.99
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 42  VGLTAIPQGIAYAVVAGLQPQV 63
           VG TAI +G+A+ +V G  P+V
Sbjct: 218 VGKTAIAEGLAWRIVQGDVPEV 239


>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance,
          transporter, homodimer, dual topology, transport
          protein; NMR {Escherichia coli}
          Length = 137

 Score = 25.1 bits (55), Expect = 2.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 40 LTVGLTAIPQGIAYAVVAGL 59
          L   L  IP GIAYA+ +G+
Sbjct: 47 LAQTLAYIPTGIAYAIWSGV 66


>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug
          resistance transporter, SMR, antiport, inner membrane,
          transmembrane; HET: P4P; 3.80A {Escherichia coli K12}
          PDB: 3b61_A 3b62_A*
          Length = 110

 Score = 24.6 bits (54), Expect = 2.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 40 LTVGLTAIPQGIAYAVVAGL 59
          L   L  IP GIAYA+ +G+
Sbjct: 47 LAQTLAYIPTGIAYAIWSGV 66


>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
          methyltransferase, isomerization, protein repair,
          S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
          melanogaster} SCOP: c.66.1.7
          Length = 227

 Score = 24.1 bits (53), Expect = 4.7
 Identities = 5/17 (29%), Positives = 6/17 (35%)

Query: 2  QGPPMTWLSSQRLKQRL 18
           G  M W S     + L
Sbjct: 3  PGIHMAWRSVGANNEDL 19


>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
           fold, structural genomics, PSI-2, protein structure
           initiative; 2.00A {Homo sapiens}
          Length = 153

 Score = 23.9 bits (52), Expect = 4.9
 Identities = 6/39 (15%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 9   LSSQRLKQRLPILKWLPTYDRESLVHDFIAGLTVGLTAI 47
           +  +  ++RL +  W      +S     I  ++ G+ ++
Sbjct: 86  VQEEDDQKRLLVTVW--NRASQSRQSGLIGCMSFGVKSL 122


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0695    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,156,455
Number of extensions: 54645
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 11
Length of query: 75
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 31
Effective length of database: 5,473,269
Effective search space: 169671339
Effective search space used: 169671339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)