RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15561
         (75 letters)



>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 393

 Score = 25.7 bits (54), Expect = 0.53
 Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 4/34 (11%)

Query: 4   PPMTWLSSQRLKQRLPILKWLPTYDRESLVHDFI 37
                    +L +    L   P Y  +SL+   +
Sbjct: 332 EHYYNAKHTKLME----LGLEPHYLSDSLLDSLL 361


>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
          thermophilus [TaxId: 274]}
          Length = 387

 Score = 25.4 bits (55), Expect = 0.68
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 42 VGLTAIPQGIAYAVVAGLQPQV 63
          VG TAI +G+A  +V G  P+ 
Sbjct: 54 VGKTAIVEGLAQRIVKGDVPEG 75


>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 321

 Score = 25.4 bits (54), Expect = 0.73
 Identities = 4/34 (11%), Positives = 13/34 (38%), Gaps = 3/34 (8%)

Query: 4   PPMTWLSSQRLKQRLPILKWLPTYDRESLVHDFI 37
             +   +  + ++   +L W P    + L+   +
Sbjct: 281 VDVLLGNPAKAQR---VLGWKPRTSLDELIRMMV 311


>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 339

 Score = 25.4 bits (54), Expect = 0.80
 Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 3/34 (8%)

Query: 4   PPMTWLSSQRLKQRLPILKWLPTYDRESLVHDFI 37
                  + + K+   +L W P    E LV   +
Sbjct: 291 VDNLQGDASKAKE---VLGWKPQVGFEKLVKMMV 321


>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli
           [TaxId: 562]}
          Length = 357

 Score = 24.4 bits (52), Expect = 1.6
 Identities = 5/35 (14%), Positives = 10/35 (28%), Gaps = 3/35 (8%)

Query: 4   PPMTWLSSQRLKQRLPILKWLPTYDRESLVHDFIA 38
                    +  +    L W P      +V + +A
Sbjct: 316 VETLLGDPTKAHE---KLGWKPEITLREMVSEMVA 347


>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia
           pseudotuberculosis [TaxId: 633]}
          Length = 356

 Score = 24.4 bits (51), Expect = 1.6
 Identities = 5/34 (14%), Positives = 11/34 (32%), Gaps = 3/34 (8%)

Query: 4   PPMTWLSSQRLKQRLPILKWLPTYDRESLVHDFI 37
                L   + K     L W P ++  + +   +
Sbjct: 299 AHYLKLDCSKAKM---QLGWHPRWNLNTTLEYIV 329


>d2r4qa1 c.44.2.2 (A:171-273) Fructose-specific enzyme IIABC
          component FruA, middle domain {Bacillus subtilis
          [TaxId: 1423]}
          Length = 103

 Score = 23.5 bits (51), Expect = 2.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 42 VGLTAIPQGIAYAVVA 57
          + +TA P GIA+  +A
Sbjct: 3  LAVTACPTGIAHTFMA 18


>d2r48a1 c.44.2.2 (A:2-104) Mannose-specific enzyme IIBCA
          component ManP, N-terminal domain {Bacillus subtilis
          [TaxId: 1423]}
          Length = 103

 Score = 22.7 bits (49), Expect = 4.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 42 VGLTAIPQGIAYAVVA 57
          + +T+ P GIA+  +A
Sbjct: 3  LAITSCPNGIAHTYMA 18


>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia
          coli [TaxId: 562]}
          Length = 79

 Score = 21.8 bits (47), Expect = 7.6
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 3/32 (9%)

Query: 30 ESLVHDFI---AGLTVGLTAIPQGIAYAVVAG 58
          E+L  D +   A + +GL AI   I   ++ G
Sbjct: 2  ENLNMDLLYMAAAVMMGLAAIGAAIGIGILGG 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0709    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 275,371
Number of extensions: 9869
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 9
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (21.9 bits)