BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15562
(318 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DND|A Chain A, Crystal Structure Of Syntaxin 10 From Homo Sapiens
Length = 130
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 49/64 (76%), Gaps = 2/64 (3%)
Query: 1 EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
EV KA+N R LY+RW EL +E+ A + R+EL+WTT ELRN LRSIEWDLEDLE+TI I
Sbjct: 35 EVQKAVNTARGLYQRWCELLQESAA--VGREELDWTTNELRNGLRSIEWDLEDLEETIGI 92
Query: 61 LYNN 64
+ N
Sbjct: 93 VEAN 96
>pdb|1LVF|A Chain A, Syntaxin 6
pdb|1LVF|B Chain B, Syntaxin 6
Length = 110
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 49/64 (76%), Gaps = 2/64 (3%)
Query: 1 EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
EV KA+N + L++RW EL + A+ R+E++WTT ELRN+LRSIEWDLEDL++TI+I
Sbjct: 13 EVQKAVNTAQGLFQRWTELLQGPSAAT--REEIDWTTNELRNNLRSIEWDLEDLDETISI 70
Query: 61 LYNN 64
+ N
Sbjct: 71 VEAN 74
>pdb|2NPS|D Chain D, Crystal Structure Of The Early Endosomal Snare Complex
Length = 82
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 51/66 (77%)
Query: 198 MFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAK 257
M QD QL+++S +IG LK +S+ IG EL+EQA+ML++ +E+E T+S+LD MKK+AK
Sbjct: 13 MGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAK 72
Query: 258 VLHISN 263
V H+++
Sbjct: 73 VSHMTS 78
>pdb|1GL2|D Chain D, Crystal Structure Of An Endosomal Snare Core Complex
Length = 65
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 201 QQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKV 258
+QD+ LD LS I K + + IG+ELDEQ ++D++ N +E T+ KL ++V V
Sbjct: 6 EQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV 63
>pdb|1L4A|D Chain D, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 87
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 182 SPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEM 241
P+ +V+ N A D ++ + +S IG L+ ++ ++G+E+ Q +D + +
Sbjct: 10 GPSSGYVTRITN--DAREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKA 67
Query: 242 ECTESKLDATMKKVAKVL 259
E ES++D KK K+L
Sbjct: 68 ESNESRIDEANKKATKLL 85
>pdb|3ZUS|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|C Chain C, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|D Chain D, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
Length = 927
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/67 (20%), Positives = 34/67 (50%)
Query: 200 DQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVL 259
D+ + L + +G LK ++ NIG+E+D Q + + ++ + ++D + K++
Sbjct: 433 DEMEENLTQVGSILGNLKDMALNIGNEIDAQNRQIKRITDKADTNRDRIDIANARAKKLI 492
Query: 260 HISNGEM 266
+N +
Sbjct: 493 DSANSAL 499
>pdb|3SC6|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|D Chain D, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|E Chain E, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|F Chain F, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
Length = 287
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 93 KPLLSDDFHSPSPVKISAPFGSSRQTKYSKLNNQMDSPNRSWL----SNSINQQSAMFDQ 148
+P D+FH+P+P+ I + + +L+N+ SWL N+ + +
Sbjct: 114 RPEGYDEFHNPAPINIYGASKYAGEQFVKELHNKYFIVRTSWLYGKYGNNFVKTMIRLGK 173
Query: 149 QDSQLDMLSETIGTLT 164
+ ++ ++++ IG+ T
Sbjct: 174 EREEISVVADQIGSPT 189
>pdb|4A5B|A Chain A, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 1
(Ntpdase1)
pdb|4A5B|B Chain B, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 1
(Ntpdase1)
Length = 611
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 239 NEMECTESKLDATMKKVAKVLHISNGEMLDEMGNEMECT 277
NEM+C E+ +D T K +A+ + I N +++ GN +C
Sbjct: 385 NEMQCRENSIDPT-KPLAERMKIENCSIIEGTGNFDKCV 422
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 252 MKKVAKVLHISNGEMLDEMGNEMECTESKLDATMKKVAKVLHISNVFCS 300
+K +A + N E+ ++ NEM+C E+ +D T K +A+ + I N CS
Sbjct: 365 LKPLATYCSVHNPEISFKVTNEMQCRENSIDPT-KPLAERMKIEN--CS 410
>pdb|1SMP|A Chain A, Crystal Structure Of A Complex Between Serratia Marcescens
Metallo-Protease And An Inhibitor From Erwinia
Chrysanthemi
Length = 471
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 59 NILYNNFDFIEHLCMKDTMNYSREKDRGGD---HMSSKPLLSDDFHSPSPVKISAPFGSS 115
N YN+ + E M+Y E + GGD H ++ PLL D I +G++
Sbjct: 196 NPTYNDVTYAEDTRQFSLMSYWSETNTGGDNGGHYAAAPLLDD------IAAIQHLYGAN 249
Query: 116 RQTKYSKLNNQMDS-PNRSWLSNSINQQSAMFDQQDS 151
T+ +S R +LS + N Q +F D+
Sbjct: 250 LSTRTGDTVYGFNSNTGRDFLSTTSNSQKVIFAAWDA 286
>pdb|4A5A|A Chain A, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|B Chain B, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|C Chain C, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|D Chain D, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
Length = 611
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 252 MKKVAKVLHISNGEMLDEMGNEMECTESKLDATMKKVAKVLHISNVFCS 300
+K +A ++N E+ ++ NEM+C E+ +D T K +A+ + I N CS
Sbjct: 365 LKPLATYCSVNNPEISFKVTNEMQCRENSIDPT-KPLAERMKIEN--CS 410
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 239 NEMECTESKLDATMKKVAKVLHISNGEMLDEMGNEMECT 277
NEM+C E+ +D T K +A+ + I N ++ GN +C
Sbjct: 385 NEMQCRENSIDPT-KPLAERMKIENCSIIKGTGNFDKCV 422
>pdb|4A57|A Chain A, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|B Chain B, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|C Chain C, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|D Chain D, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A59|A Chain A, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|B Chain B, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|C Chain C, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|D Chain D, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
Length = 611
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 252 MKKVAKVLHISNGEMLDEMGNEMECTESKLDATMKKVAKVLHISNVFCS 300
+K +A ++N E+ ++ NEM+C E+ +D T K +A+ + I N CS
Sbjct: 365 LKPLATYCSVNNPEISFKVTNEMQCRENSIDPT-KPLAERMKIEN--CS 410
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 239 NEMECTESKLDATMKKVAKVLHISNGEMLDEMGNEMECT 277
NEM+C E+ +D T K +A+ + I N ++ GN +C
Sbjct: 385 NEMQCRENSIDPT-KPLAERMKIENCSIIKGTGNFDKCV 422
>pdb|3IDO|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase From
Entamoeba Histolytica With A Phosphotyrosine Crude Mimic
Hepes Molecule In The Active Site
pdb|3IDO|B Chain B, Crystal Structure Of Protein Tyrosine Phosphatase From
Entamoeba Histolytica With A Phosphotyrosine Crude Mimic
Hepes Molecule In The Active Site
pdb|3ILY|A Chain A, Apo Crystal Structure Of Protein Tyrosine Phosphatase From
Entamoeba Histolytica Featuring A Disordered Active Site
pdb|3ILY|B Chain B, Apo Crystal Structure Of Protein Tyrosine Phosphatase From
Entamoeba Histolytica Featuring A Disordered Active Site
pdb|3JS5|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase From
Entamoeba Histolytica With Hepes In The Active Site.
High Resolution, Alternative Crystal Form With 1
Molecule In Asymmetric Unit
Length = 178
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 213 IGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNGEMLDEMGN 272
+GTL+ ++ GS L+ +GN C +A MKKV + H++ + D G
Sbjct: 9 MGTLEAQTQGPGS----MKLLFVCLGNI--CRSPAAEAVMKKVIQNHHLTEKYICDSAGT 62
Query: 273 EMECTESKLDATMKKVAK 290
+ D+ M+KV K
Sbjct: 63 CSYHEGQQADSRMRKVGK 80
>pdb|1R0U|A Chain A, Crystal Structure Of Ywib Protein From Bacillus Subtilis
Length = 148
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 23 TYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINILYN 63
T AS I + ++ + EL+ S +SI+ DL++ + I+I Y+
Sbjct: 85 TGASTIAKYKMSFGELELKTSTKSIQSDLDEEKGRISIAYD 125
>pdb|1AF0|A Chain A, Serratia Protease In Complex With Inhibitor
Length = 471
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 62 YNNFDFIEHLCMKDTMNYSREKDRGGD---HMSSKPLLSDDFHSPSPVKISAPFGSSRQT 118
YN+ + E M+Y E + GGD H ++ PLL D I +G++ T
Sbjct: 199 YNDVTYAEDTRQFSLMSYWSETNTGGDNGGHYAAAPLLDD------IAAIQHLYGANLST 252
Query: 119 KYSKLNNQMDS-PNRSWLSNSINQQSAMFDQQDS 151
+ +S R +LS + N Q +F D+
Sbjct: 253 RTGDTVYGFNSNTGRDFLSTTSNSQKVIFAAWDA 286
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.125 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,400,521
Number of Sequences: 62578
Number of extensions: 314949
Number of successful extensions: 637
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 618
Number of HSP's gapped (non-prelim): 46
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)