Query psy15562
Match_columns 318
No_of_seqs 224 out of 667
Neff 5.5
Searched_HMMs 46136
Date Sat Aug 17 00:26:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15562.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15562hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3202|consensus 100.0 1.6E-29 3.4E-34 233.6 21.3 216 1-299 14-232 (235)
2 PF09177 Syntaxin-6_N: Syntaxi 99.6 6.8E-16 1.5E-20 124.9 6.1 77 1-85 9-85 (97)
3 PF05739 SNARE: SNARE domain; 99.2 7.1E-11 1.5E-15 87.4 9.1 62 201-262 1-62 (63)
4 KOG3385|consensus 99.2 4.3E-11 9.4E-16 99.5 7.5 85 200-299 32-117 (118)
5 smart00397 t_SNARE Helical reg 98.9 5.1E-09 1.1E-13 76.8 7.9 63 195-257 3-65 (66)
6 cd00193 t_SNARE Soluble NSF (N 98.9 5.1E-09 1.1E-13 75.7 7.1 58 200-257 2-59 (60)
7 KOG3065|consensus 98.6 7E-08 1.5E-12 91.8 7.4 59 201-259 215-273 (273)
8 KOG0812|consensus 98.2 0.0003 6.5E-09 67.3 20.1 94 193-302 209-309 (311)
9 PF09753 Use1: Membrane fusion 97.8 0.0002 4.4E-09 67.1 10.9 95 187-299 153-247 (251)
10 KOG3202|consensus 97.5 0.00022 4.8E-09 66.8 6.7 155 31-232 49-214 (235)
11 COG5325 t-SNARE complex subuni 97.0 0.0083 1.8E-07 57.3 11.2 104 186-306 177-281 (283)
12 KOG0809|consensus 96.0 0.052 1.1E-06 52.4 10.1 87 185-271 191-287 (305)
13 KOG0810|consensus 95.8 0.078 1.7E-06 51.5 10.3 58 203-260 205-262 (297)
14 KOG0811|consensus 95.0 0.31 6.6E-06 46.8 11.2 71 192-262 168-238 (269)
15 PF12352 V-SNARE_C: Snare regi 94.0 0.7 1.5E-05 34.3 9.1 63 199-261 3-65 (66)
16 PF03908 Sec20: Sec20; InterP 93.7 1.8 3.9E-05 34.5 11.4 80 205-301 9-88 (92)
17 COG5074 t-SNARE complex subuni 93.2 0.51 1.1E-05 44.5 8.6 59 203-261 184-242 (280)
18 KOG2678|consensus 92.8 1.2 2.6E-05 41.8 10.2 95 188-299 142-236 (244)
19 PF05739 SNARE: SNARE domain; 79.5 6.1 0.00013 28.6 5.5 47 149-214 2-49 (63)
20 PF01519 DUF16: Protein of unk 79.3 11 0.00024 31.3 7.3 50 201-250 50-99 (102)
21 KOG1666|consensus 78.7 42 0.0009 31.5 11.7 91 195-301 119-216 (220)
22 KOG3385|consensus 73.6 3.7 8.1E-05 34.8 3.2 56 148-222 33-93 (118)
23 PF07889 DUF1664: Protein of u 65.1 51 0.0011 28.3 8.4 55 204-258 68-122 (126)
24 smart00397 t_SNARE Helical reg 64.5 20 0.00044 25.3 5.2 52 144-214 5-57 (66)
25 PF06103 DUF948: Bacterial pro 61.6 72 0.0016 24.9 8.3 49 201-249 23-75 (90)
26 cd00193 t_SNARE Soluble NSF (N 57.6 26 0.00056 24.4 4.6 17 148-164 3-19 (60)
27 PHA02414 hypothetical protein 56.2 51 0.0011 27.3 6.6 34 29-62 30-77 (111)
28 PF10669 Phage_Gp23: Protein g 54.5 25 0.00054 29.2 4.5 30 191-220 83-112 (121)
29 PF00957 Synaptobrevin: Synapt 53.4 1E+02 0.0023 23.8 9.8 10 205-214 4-13 (89)
30 COG0497 RecN ATPase involved i 47.1 3.2E+02 0.0069 29.2 12.4 48 7-67 157-204 (557)
31 PRK11637 AmiB activator; Provi 46.5 2.2E+02 0.0047 28.6 10.9 60 201-260 72-131 (428)
32 KOG3208|consensus 46.0 2.7E+02 0.0058 26.4 10.4 58 204-261 149-206 (231)
33 PRK11637 AmiB activator; Provi 45.3 2.2E+02 0.0047 28.7 10.6 69 195-263 59-127 (428)
34 PF07889 DUF1664: Protein of u 43.1 2E+02 0.0043 24.7 8.5 45 201-245 79-123 (126)
35 PF04102 SlyX: SlyX; InterPro 42.5 1.5E+02 0.0032 22.4 7.2 49 203-251 3-51 (69)
36 PF08614 ATG16: Autophagy prot 42.0 1.8E+02 0.004 26.0 8.7 74 190-263 102-175 (194)
37 PF09457 RBD-FIP: FIP domain ; 41.3 65 0.0014 23.1 4.5 38 30-67 2-44 (48)
38 cd07664 BAR_SNX2 The Bin/Amphi 41.1 2.4E+02 0.0053 26.4 9.6 78 194-271 26-108 (234)
39 KOG3894|consensus 41.1 2E+02 0.0044 28.4 9.2 67 199-265 227-293 (316)
40 PF13747 DUF4164: Domain of un 40.2 1.9E+02 0.0042 23.1 7.8 54 207-260 35-88 (89)
41 PF00804 Syntaxin: Syntaxin; 39.1 1.5E+02 0.0033 22.6 6.8 58 2-59 12-73 (103)
42 PRK09973 putative outer membra 38.7 1.4E+02 0.0031 24.0 6.5 45 205-249 25-69 (85)
43 PRK09546 zntB zinc transporter 38.6 3.7E+02 0.0079 25.9 11.2 20 286-305 267-288 (324)
44 PF05531 NPV_P10: Nucleopolyhe 38.5 98 0.0021 24.4 5.4 54 196-249 10-66 (75)
45 PRK09039 hypothetical protein; 38.4 3.3E+02 0.0073 26.9 10.5 67 188-254 121-187 (343)
46 PRK00846 hypothetical protein; 38.0 2E+02 0.0043 22.7 7.4 48 204-251 13-60 (77)
47 PF05791 Bacillus_HBL: Bacillu 37.8 2.1E+02 0.0045 25.6 8.3 63 202-264 101-163 (184)
48 cd07627 BAR_Vps5p The Bin/Amph 37.2 2.7E+02 0.0058 25.4 9.1 73 193-265 7-84 (216)
49 cd00179 SynN Syntaxin N-termin 36.8 1.9E+02 0.0041 24.1 7.6 62 200-261 9-70 (151)
50 PRK02119 hypothetical protein; 36.4 2E+02 0.0043 22.2 7.2 49 200-248 5-53 (73)
51 PF12495 Vip3A_N: Vegetative i 35.5 1.3E+02 0.0027 26.2 6.1 66 190-255 38-110 (177)
52 PRK11085 magnesium/nickel/coba 34.3 3.3E+02 0.0071 26.7 9.6 18 288-305 261-280 (316)
53 KOG0964|consensus 33.9 4.1E+02 0.0088 30.6 11.0 78 184-261 391-468 (1200)
54 PF04728 LPP: Lipoprotein leuc 33.9 2E+02 0.0043 21.4 7.3 23 206-228 5-27 (56)
55 TIGR00383 corA magnesium Mg(2+ 33.3 3.9E+02 0.0085 25.2 9.9 71 186-260 172-244 (318)
56 PRK04654 sec-independent trans 33.2 2.4E+02 0.0052 26.5 7.9 25 206-230 29-53 (214)
57 PF05335 DUF745: Protein of un 32.0 4E+02 0.0087 24.3 9.4 62 197-258 109-170 (188)
58 KOG3065|consensus 31.5 4.3E+02 0.0092 25.6 9.7 77 193-269 65-144 (273)
59 KOG2629|consensus 31.4 1.6E+02 0.0034 28.9 6.7 55 2-62 134-188 (300)
60 PRK04325 hypothetical protein; 30.9 2.5E+02 0.0054 21.6 7.3 44 204-247 9-52 (74)
61 PF06320 GCN5L1: GCN5-like pro 30.8 1.7E+02 0.0037 24.7 6.1 52 6-64 63-114 (121)
62 PF01519 DUF16: Protein of unk 29.9 3.3E+02 0.0071 22.7 7.9 41 196-236 59-99 (102)
63 PF03670 UPF0184: Uncharacteri 29.7 1.3E+02 0.0027 24.2 4.8 30 198-227 27-56 (83)
64 PHA03386 P10 fibrous body prot 29.0 2.6E+02 0.0056 22.9 6.5 52 194-249 9-60 (94)
65 PRK15396 murein lipoprotein; P 28.8 2.6E+02 0.0056 22.1 6.4 29 204-232 39-67 (78)
66 PRK01919 tatB sec-independent 28.7 2.7E+02 0.0059 25.2 7.3 27 205-231 28-54 (169)
67 PF10241 KxDL: Uncharacterized 28.6 3E+02 0.0064 21.8 10.7 70 188-257 13-82 (88)
68 PF02970 TBCA: Tubulin binding 28.6 1.9E+02 0.0042 23.0 5.8 50 214-264 31-80 (90)
69 PRK04406 hypothetical protein; 28.3 2.8E+02 0.0062 21.5 7.6 48 201-248 8-55 (75)
70 PF00261 Tropomyosin: Tropomyo 25.8 4.6E+02 0.01 24.2 8.7 65 198-262 9-73 (237)
71 PRK00736 hypothetical protein; 24.2 3.2E+02 0.0069 20.7 7.0 43 206-248 7-49 (68)
72 PF06008 Laminin_I: Laminin Do 24.0 3.1E+02 0.0067 25.7 7.3 54 4-63 153-206 (264)
73 PF07799 DUF1643: Protein of u 23.4 36 0.00079 28.6 0.8 44 263-307 12-56 (136)
74 PF10498 IFT57: Intra-flagella 23.4 4.2E+02 0.0092 26.5 8.4 65 196-260 279-345 (359)
75 PF02403 Seryl_tRNA_N: Seryl-t 23.1 3.9E+02 0.0085 21.3 7.0 19 5-23 27-45 (108)
76 PF12777 MT: Microtubule-bindi 22.5 3.3E+02 0.0071 26.7 7.4 87 206-301 237-323 (344)
77 TIGR01010 BexC_CtrB_KpsE polys 22.4 5.7E+02 0.012 24.9 9.1 60 227-286 273-334 (362)
78 PF04912 Dynamitin: Dynamitin 22.2 5.8E+02 0.012 25.4 9.2 41 200-241 305-345 (388)
79 PRK10803 tol-pal system protei 22.2 4.8E+02 0.01 24.7 8.2 52 188-239 45-100 (263)
80 PRK11578 macrolide transporter 22.1 3.8E+02 0.0082 26.1 7.8 56 5-63 121-179 (370)
81 cd07665 BAR_SNX1 The Bin/Amphi 21.5 6.9E+02 0.015 23.5 10.2 102 194-306 26-132 (234)
82 PF03904 DUF334: Domain of unk 21.2 7.1E+02 0.015 23.6 11.2 24 186-209 86-109 (230)
83 PF01213 CAP_N: Adenylate cycl 21.0 6E+02 0.013 25.0 8.7 38 197-237 44-81 (312)
84 PF09712 PHA_synth_III_E: Poly 20.4 84 0.0018 30.5 2.7 72 6-77 210-281 (293)
85 KOG2196|consensus 20.1 5.5E+02 0.012 24.6 7.9 30 231-260 177-206 (254)
86 smart00503 SynN Syntaxin N-ter 20.0 4.4E+02 0.0096 20.7 7.6 61 200-260 11-71 (117)
No 1
>KOG3202|consensus
Probab=99.97 E-value=1.6e-29 Score=233.58 Aligned_cols=216 Identities=31% Similarity=0.350 Sum_probs=159.8
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhcccCccchhhHHHHHHHHHHHHHhHHhcHHHHHHHHHHHHhCCceeeecccccchhhh
Q psy15562 1 EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINILYNNFDFIEHLCMKDTMNYS 80 (318)
Q Consensus 1 EV~~sl~~~~~ly~Rw~~L~~~~~~~~~s~~El~~~~~EL~~~l~siE~DLeDL~esI~ivE~nP~f~~i~e~k~~~e~~ 80 (318)
|+.+.++.++++|+||.++...+ .+++.|++..|+ ++|+|+++||+++|.+++++|..|++ ++.++.
T Consensus 14 e~~k~~~~~~~~~~r~~~~~~~~------~~~~~~~t~~lr---~~i~~~~edl~~~~~il~~~~~~~~i----de~El~ 80 (235)
T KOG3202|consen 14 ETLKLSEEIQGLYQRRSELLKDT------GSDAEELTSVLR---RSIEEDLEDLDELISILERNPSKFGI----DEFELS 80 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc------cchhHHHHHHHH---HHhHHHHHHHHHHHHHHHhCcccccC----cHHHHH
Confidence 57899999999999999998873 248999999999 99999999999999999999998888 777777
Q ss_pred hhhccCCCccccccccccCCCCCCCCcccCCCCCCccchhhh--hhhccCCCCcccchhchhHHHHhhhhhhhhhhhhhh
Q psy15562 81 REKDRGGDHMSSKPLLSDDFHSPSPVKISAPFGSSRQTKYSK--LNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSE 158 (318)
Q Consensus 81 ~~~~~~~ei~~r~~ll~~~~~~~~~~~~~~~~~~~~~~~y~k--l~~~~~s~~~~~~~~~~~qq~ll~~~qd~ql~~v~~ 158 (318)
+|+++ |.+.+.-+.... .+... +. ++.+++.+
T Consensus 81 ~R~~~---i~~lr~q~~~~~-----------------~~~~~~~~~---~~~~r~~l----------------------- 114 (235)
T KOG3202|consen 81 RRRRF---IDNLRTQLRQMK-----------------SKMAMSGFA---NSNIRDIL----------------------- 114 (235)
T ss_pred HHHHH---HHHHHHHHHHHH-----------------HHHHhhccc---cccchhhh-----------------------
Confidence 77766 444443333210 00000 00 00000000
Q ss_pred hhcccccccccccc-cccccccCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy15562 159 TIGTLTVQVRRQTK-YSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEM 237 (318)
Q Consensus 159 sig~~k~s~~~~~~-y~~l~~~~~~~n~~fi~~elq~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL 237 (318)
++.+..+. ........+.+ +++...+.|++||++||++||.|+++|+++|+||..||+||++|+.|||+|
T Consensus 115 ------~~~~~~~~~~~~~~~~~~~D---~v~~~~~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl 185 (235)
T KOG3202|consen 115 ------LGPEKSPNLDEAMSRASGLD---NVQEIVQLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDL 185 (235)
T ss_pred ------cCCCCCCchhhhHHHhhccC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11000000 11111111111 277888999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhhhHHHHHHHHHHhhcCCcccccccchhhhcccchhhHHHHHHHHHHHHHhhh
Q psy15562 238 GNEMECTESKLDATMKKVAKVLHISNGEMLDEMGNEMECTESKLDATMKKVAKVLHISNVFC 299 (318)
Q Consensus 238 ~~~vD~t~~rL~~~~kkl~~vl~~s~~r~c~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 299 (318)
+++||+|.+||+++++++.+|.+++ ++|.+|||+-.+.++-+..|++
T Consensus 186 ~~e~d~t~srl~~~~~~l~~v~~~~---------------s~~~~~~~il~l~~~~~lvv~i 232 (235)
T KOG3202|consen 186 DNEMDRTESRLDRVMKRLAKVNRMA---------------SQCSQWCAILLLVGLLLLVVII 232 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---------------ccccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999976 6777788888777766555544
No 2
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=99.61 E-value=6.8e-16 Score=124.88 Aligned_cols=77 Identities=40% Similarity=0.724 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhcccCccchhhHHHHHHHHHHHHHhHHhcHHHHHHHHHHHHhCCceeeecccccchhhh
Q psy15562 1 EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINILYNNFDFIEHLCMKDTMNYS 80 (318)
Q Consensus 1 EV~~sl~~~~~ly~Rw~~L~~~~~~~~~s~~El~~~~~EL~~~l~siE~DLeDL~esI~ivE~nP~f~~i~e~k~~~e~~ 80 (318)
||+++|++++++|.+|..+...+. +++|+.|+++||+++|.+|+|||+||++||.|||+||+.|+| +..++.
T Consensus 9 ev~~sl~~l~~~~~~~~~~~~~~~----~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l----~~~Ei~ 80 (97)
T PF09177_consen 9 EVQSSLDRLESLYRRWQRLRSDTS----SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNL----SEEEIS 80 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC----CHHHHH
Confidence 699999999999999999988773 689999999999999999999999999999999999998888 666777
Q ss_pred hhhcc
Q psy15562 81 REKDR 85 (318)
Q Consensus 81 ~~~~~ 85 (318)
+||+|
T Consensus 81 ~Rr~f 85 (97)
T PF09177_consen 81 RRRQF 85 (97)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77766
No 3
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.22 E-value=7.1e-11 Score=87.43 Aligned_cols=62 Identities=32% Similarity=0.525 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhc
Q psy15562 201 QQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHIS 262 (318)
Q Consensus 201 eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s 262 (318)
++|+.|+.|+.+|..|++++..||.||++|+.|||+|++.||+|..+|..++++|.++.+..
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~ 62 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999999999999999998764
No 4
>KOG3385|consensus
Probab=99.20 E-value=4.3e-11 Score=99.49 Aligned_cols=85 Identities=21% Similarity=0.284 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhcCCc-ccccccchhhhcc
Q psy15562 200 DQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNGE-MLDEMGNEMECTE 278 (318)
Q Consensus 200 ~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s~~r-~c~~~~~~~~~~~ 278 (318)
.|.|+.++.|.+.|..||.++..||+|++.||++||.+++++|+|.+.|..+|.|++.+.+.++-+ +|
T Consensus 32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~sg~~l~~----------- 100 (118)
T KOG3385|consen 32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARRSGISLLC----------- 100 (118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCCcchHH-----------
Confidence 688999999999999999999999999999999999999999999999999999999999983322 66
Q ss_pred cchhhHHHHHHHHHHHHHhhh
Q psy15562 279 SKLDATMKKVAKVLHISNVFC 299 (318)
Q Consensus 279 ~k~~~~~~~~~~~~~~~~~~~ 299 (318)
|.+...+.++||+.+++
T Consensus 101 ----~m~~f~lV~~fi~~~~l 117 (118)
T KOG3385|consen 101 ----WMAVFSLVAFFILWVWL 117 (118)
T ss_pred ----HHHHHHHHHHHHhheee
Confidence 55566666677766654
No 5
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=98.92 E-value=5.1e-09 Score=76.81 Aligned_cols=63 Identities=29% Similarity=0.523 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHH
Q psy15562 195 QSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAK 257 (318)
Q Consensus 195 Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~ 257 (318)
+..+++++|+.|+.|+.+|..+++++..|+.||.+|+.+||.+++.+|.+...+..+.+++.+
T Consensus 3 ~~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~ 65 (66)
T smart00397 3 ADQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK 65 (66)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 567899999999999999999999999999999999999999999999999999999999875
No 6
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=98.90 E-value=5.1e-09 Score=75.67 Aligned_cols=58 Identities=26% Similarity=0.552 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHH
Q psy15562 200 DQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAK 257 (318)
Q Consensus 200 ~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~ 257 (318)
+++|+.|+.|+.+|..|+.++..|+.||.+|+.+||.++..+|++..++..+++++.+
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k 59 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK 59 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999999999999999999999999976
No 7
>KOG3065|consensus
Probab=98.63 E-value=7e-08 Score=91.81 Aligned_cols=59 Identities=31% Similarity=0.533 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHH
Q psy15562 201 QQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVL 259 (318)
Q Consensus 201 eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl 259 (318)
++|+.|+.|++.+++||.||.+||.||+.||..||.|.+.+|+...++..+++|+++++
T Consensus 215 eiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kLl 273 (273)
T KOG3065|consen 215 EIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKLL 273 (273)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999999999999999999999875
No 8
>KOG0812|consensus
Probab=98.20 E-value=0.0003 Score=67.26 Aligned_cols=94 Identities=17% Similarity=0.239 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhcCCc
Q psy15562 193 NQQSAMFDQQDS-------QLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNGE 265 (318)
Q Consensus 193 q~Qq~~m~eQDe-------~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s~~r 265 (318)
++|..+|+++|+ .+..|..+|..|+++=..+-.=+.+|.+++..+|+.||.+...+..+..-|-+.+..
T Consensus 209 qqQm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~---- 284 (311)
T KOG0812|consen 209 QQQMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFER---- 284 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHH----
Confidence 667777777754 466788888888888888888899999999999999999999999999999988776
Q ss_pred ccccccchhhhcccchhhHHHHHHHHHHHHHhhhhhc
Q psy15562 266 MLDEMGNEMECTESKLDATMKKVAKVLHISNVFCSYE 302 (318)
Q Consensus 266 ~c~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
.|+--|.|.||.+||++|.+||++-
T Consensus 285 ------------vSSNRwLmvkiF~i~ivFflvfvlf 309 (311)
T KOG0812|consen 285 ------------VSSNRWLMVKIFGILIVFFLVFVLF 309 (311)
T ss_pred ------------hccchHHHHHHHHHHHHHHHHHHHh
Confidence 6888999999999999999999863
No 9
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=97.79 E-value=0.0002 Score=67.10 Aligned_cols=95 Identities=18% Similarity=0.130 Sum_probs=76.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhcCCcc
Q psy15562 187 WVSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNGEM 266 (318)
Q Consensus 187 fi~~elq~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s~~r~ 266 (318)
-++..++.|+ ..|++--+.+..-...||+.+..++.=|.+-+.+|+.....+|+....|..+.+|+....+++.+
T Consensus 153 ~~e~~l~~~~---~~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~-- 227 (251)
T PF09753_consen 153 SLEKILQHHR---NLQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG-- 227 (251)
T ss_pred cHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 3444444444 35777788888889999999999999999999999999999999999999999999998876533
Q ss_pred cccccchhhhcccchhhHHHHHHHHHHHHHhhh
Q psy15562 267 LDEMGNEMECTESKLDATMKKVAKVLHISNVFC 299 (318)
Q Consensus 267 c~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 299 (318)
|+ .|.|+.+..++||+.+||
T Consensus 228 ~~-------------~~~~i~~v~~~Fi~mvl~ 247 (251)
T PF09753_consen 228 CW-------------TWLMIFVVIIVFIMMVLF 247 (251)
T ss_pred HH-------------HHHHHHHHHHHHHHHHHH
Confidence 43 366777777777777666
No 10
>KOG3202|consensus
Probab=97.51 E-value=0.00022 Score=66.77 Aligned_cols=155 Identities=19% Similarity=0.242 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHHHHhHHhcHHHHHHHHHHHHhCC--ceee-----ecccccchhhhhhhccCCCccccccccccCCCCC
Q psy15562 31 DELEWTTTELRNSLRSIEWDLEDLEDTINILYNNF--DFIE-----HLCMKDTMNYSREKDRGGDHMSSKPLLSDDFHSP 103 (318)
Q Consensus 31 ~El~~~~~EL~~~l~siE~DLeDL~esI~ivE~nP--~f~~-----i~e~k~~~e~~~~~~~~~ei~~r~~ll~~~~~~~ 103 (318)
..+.|+..+|...+.-++.++...- |.--|-.. .|++ +.+|+..+.... + ++...+..+++..
T Consensus 49 ~~i~~~~edl~~~~~il~~~~~~~~--ide~El~~R~~~i~~lr~q~~~~~~~~~~~~---~-~~~~~r~~l~~~~---- 118 (235)
T KOG3202|consen 49 RSIEEDLEDLDELISILERNPSKFG--IDEFELSRRRRFIDNLRTQLRQMKSKMAMSG---F-ANSNIRDILLGPE---- 118 (235)
T ss_pred HHhHHHHHHHHHHHHHHHhCccccc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---c-ccccchhhhcCCC----
Confidence 3678889999999988888887653 33333222 2443 556666554311 0 1111122233211
Q ss_pred CCCcccCCCCCC---ccchhhhhhhccCCCCcccchhchhHHHHhhhhhhhhhhhhhhhhcccc-ccccccccccccccc
Q psy15562 104 SPVKISAPFGSS---RQTKYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETIGTLT-VQVRRQTKYSKLNNQ 179 (318)
Q Consensus 104 ~~~~~~~~~~~~---~~~~y~kl~~~~~s~~~~~~~~~~~qq~ll~~~qd~ql~~v~~sig~~k-~s~~~~~~y~~l~~~ 179 (318)
.+.+ ..+++..++ +.......|++|+++||++|++|+.++|.+| |+
T Consensus 119 --------~~~~~~~~~~~~~~~D---------~v~~~~~~qqqm~~eQDe~Ld~ls~ti~rlk~~a------------- 168 (235)
T KOG3202|consen 119 --------KSPNLDEAMSRASGLD---------NVQEIVQLQQQMLQEQDEGLDGLSATVQRLKGMA------------- 168 (235)
T ss_pred --------CCCchhhhHHHhhccC---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 1110 011122221 1456677899999999999999999999877 66
Q ss_pred CCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15562 180 MDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQAL 232 (318)
Q Consensus 180 ~~~~n~~fi~~elq~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~ 232 (318)
.-++.++..|..|++++|..+|.+...+.+...-...++. ...|..
T Consensus 169 ------~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~-~~s~~~ 214 (235)
T KOG3202|consen 169 ------LAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR-MASQCS 214 (235)
T ss_pred ------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcccc
Confidence 6688999999999998888888887777766655555554 544443
No 11
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.98 E-value=0.0083 Score=57.29 Aligned_cols=104 Identities=19% Similarity=0.251 Sum_probs=84.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhcCCc
Q psy15562 186 SWVSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNGE 265 (318)
Q Consensus 186 ~fi~~elq~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s~~r 265 (318)
.-..+++..|+.++.+-|+++..|..+|-.|..+=.+||.=+.+|..+.|.+|-.++.|...+..|.+-|.+..+-...+
T Consensus 177 ~l~~ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt 256 (283)
T COG5325 177 GLSNEELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRT 256 (283)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhh
Confidence 34456778899999999999999999999999999999999999999999999999999999999999999887644332
Q ss_pred -ccccccchhhhcccchhhHHHHHHHHHHHHHhhhhhccccc
Q psy15562 266 -MLDEMGNEMECTESKLDATMKKVAKVLHISNVFCSYEMNLF 306 (318)
Q Consensus 266 -~c~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (318)
.|. ...+.+|-|+++|+++-+++.
T Consensus 257 ~k~~-----------------~~~Llil~vv~lfv~l~~kl~ 281 (283)
T COG5325 257 KKCR-----------------FYLLLILLVVLLFVSLIKKLR 281 (283)
T ss_pred ccch-----------------hhHHHHHHHHHHHHHHHHHhc
Confidence 331 112345556677777766653
No 12
>KOG0809|consensus
Probab=96.05 E-value=0.052 Score=52.41 Aligned_cols=87 Identities=16% Similarity=0.287 Sum_probs=71.2
Q ss_pred hhhhhhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHH
Q psy15562 185 RSWVSNSINQQSAMFDQQ--------DSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVA 256 (318)
Q Consensus 185 ~~fi~~elq~Qq~~m~eQ--------De~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~ 256 (318)
.+|.....++||.++.+. ++++-.|..+|-.|.++=.+++.=+-+|.-++|.+|-.+++|.-++..|.+-+.
T Consensus 191 ~d~~~~~~qe~ql~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~ 270 (305)
T KOG0809|consen 191 EDFSDRTFQEQQLMLFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELH 270 (305)
T ss_pred hhhhhhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHH
Confidence 355555555666655555 677899999999999999999999999999999999999999999999999999
Q ss_pred HHHh--hcCCccccccc
Q psy15562 257 KVLH--ISNGEMLDEMG 271 (318)
Q Consensus 257 ~vl~--~s~~r~c~~~~ 271 (318)
|.-+ +..+++|+|..
T Consensus 271 KAe~yQk~~~k~~~i~~ 287 (305)
T KOG0809|consen 271 KAERYQKRNKKMKVILM 287 (305)
T ss_pred HHHHHHhcCCceEehHH
Confidence 9855 55556655433
No 13
>KOG0810|consensus
Probab=95.80 E-value=0.078 Score=51.47 Aligned_cols=58 Identities=16% Similarity=0.308 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHh
Q psy15562 203 DSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLH 260 (318)
Q Consensus 203 De~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~ 260 (318)
-..+-.|..++..|++|=.+|...++.|.+|||+++..|.++..-...+...+++-..
T Consensus 205 h~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~ 262 (297)
T KOG0810|consen 205 HDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVK 262 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999999999999999986544
No 14
>KOG0811|consensus
Probab=94.97 E-value=0.31 Score=46.78 Aligned_cols=71 Identities=14% Similarity=0.327 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhc
Q psy15562 192 INQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHIS 262 (318)
Q Consensus 192 lq~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s 262 (318)
+..|..++++-.+.+..|...|.-+.+|=.+++.=+.+|.+++|.++..|++|......+++.|.+-.+-.
T Consensus 168 ~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq 238 (269)
T KOG0811|consen 168 LEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQ 238 (269)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56688999999999999999999999999999999999999999999999999999999999999987743
No 15
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=94.01 E-value=0.7 Score=34.26 Aligned_cols=63 Identities=10% Similarity=0.132 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhh
Q psy15562 199 FDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHI 261 (318)
Q Consensus 199 m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~ 261 (318)
+.+....|+.-...+...-++|..+-.+|..|.+.|......++.+.+.|..+.+-|..+-++
T Consensus 3 l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR 65 (66)
T PF12352_consen 3 LLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRR 65 (66)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcc
Confidence 334445778888888889999999999999999999999999999999999999888877553
No 16
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=93.67 E-value=1.8 Score=34.53 Aligned_cols=80 Identities=18% Similarity=0.117 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhcCCcccccccchhhhcccchhhH
Q psy15562 205 QLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNGEMLDEMGNEMECTESKLDAT 284 (318)
Q Consensus 205 ~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s~~r~c~~~~~~~~~~~~k~~~~ 284 (318)
.|....+.+..--+.+..--++|++|+.-|..+++..+...+.|..+.+-+.++-+. .+.|-+
T Consensus 9 ~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~-----------------~~~D~~ 71 (92)
T PF03908_consen 9 SLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERR-----------------DKTDRI 71 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHhHH
Confidence 344444444444445666678899999999999999999999999999999988775 477778
Q ss_pred HHHHHHHHHHHHhhhhh
Q psy15562 285 MKKVAKVLHISNVFCSY 301 (318)
Q Consensus 285 ~~~~~~~~~~~~~~~~~ 301 (318)
++..++++|+..+++.+
T Consensus 72 li~~~~~~f~~~v~yI~ 88 (92)
T PF03908_consen 72 LIFFAFLFFLLVVLYIL 88 (92)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88878777777766543
No 17
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=93.22 E-value=0.51 Score=44.53 Aligned_cols=59 Identities=12% Similarity=0.226 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhh
Q psy15562 203 DSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHI 261 (318)
Q Consensus 203 De~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~ 261 (318)
-+.|-.|..++..|-++=.+|..++-+|.++.|-++..+..++..+..+...+.+-++.
T Consensus 184 h~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avks 242 (280)
T COG5074 184 HQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKS 242 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999988888775
No 18
>KOG2678|consensus
Probab=92.79 E-value=1.2 Score=41.78 Aligned_cols=95 Identities=17% Similarity=0.150 Sum_probs=69.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhcCCccc
Q psy15562 188 VSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNGEML 267 (318)
Q Consensus 188 i~~elq~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s~~r~c 267 (318)
.+.+++.|+-+-. +-.+.+..-++.||.++..-++-|.+=|..|......+|.....|..+..|+.+--++..
T Consensus 142 ~dq~l~~q~~lQe---eLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~---- 214 (244)
T KOG2678|consen 142 VDQQLEDQDTLQE---ELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKL---- 214 (244)
T ss_pred HHHHHHhhhHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhh----
Confidence 3344444444433 445566677788999999999999999999999999999999999999999998776532
Q ss_pred ccccchhhhcccchhhHHHHHHHHHHHHHhhh
Q psy15562 268 DEMGNEMECTESKLDATMKKVAKVLHISNVFC 299 (318)
Q Consensus 268 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 299 (318)
.-++-|+|+-+..+.||+.+||
T Consensus 215 ----------s~wf~~~miI~v~~sFVsMili 236 (244)
T KOG2678|consen 215 ----------SYWFYITMIIFVILSFVSMILI 236 (244)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHH
Confidence 1123456665555556555554
No 19
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=79.49 E-value=6.1 Score=28.58 Aligned_cols=47 Identities=23% Similarity=0.440 Sum_probs=32.2
Q ss_pred hhhhhhhhhhhhcccc-cccccccccccccccCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15562 149 QDSQLDMLSETIGTLT-VQVRRQTKYSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIG 214 (318)
Q Consensus 149 qd~ql~~v~~sig~~k-~s~~~~~~y~~l~~~~~~~n~~fi~~elq~Qq~~m~eQDe~Ld~Ls~sV~ 214 (318)
++..|+.+..+++.++ +. .-++.++..|..+++..+..++.....|.
T Consensus 2 ~d~~l~~l~~~i~~l~~~~-------------------~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~ 49 (63)
T PF05739_consen 2 RDEELDELEQSIQELKQMF-------------------QDIGEEVEEQNEMLDRIEDNVDRANENLK 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHCHhhHHHHHHHHHHHHHHHH
Confidence 5667778888876655 33 44667777777777777777776666555
No 20
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=79.30 E-value=11 Score=31.29 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhH
Q psy15562 201 QQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDA 250 (318)
Q Consensus 201 eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~ 250 (318)
.|.++++.|...|..+.+.=.....|++.|.+.|+-+...+..-..||+.
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~ 99 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88899999999999999999999999999999999888888877777765
No 21
>KOG1666|consensus
Probab=78.68 E-value=42 Score=31.46 Aligned_cols=91 Identities=15% Similarity=0.208 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhcCCccc
Q psy15562 195 QSAMFDQQDSQLDMLSETIG-------TLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNGEML 267 (318)
Q Consensus 195 Qq~~m~eQDe~Ld~Ls~sV~-------~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s~~r~c 267 (318)
|...+-+--+.|+.-+..|. .--++|..|=.+|..|.+-|..--...-.|++.|++..|-+.-+.++
T Consensus 119 QR~rLl~nTerLeRst~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR------ 192 (220)
T KOG1666|consen 119 QRARLLQNTERLERSTDRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRR------ 192 (220)
T ss_pred HHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHH------
Confidence 44444444555655554444 34456677777788888766655555555555555555555544443
Q ss_pred ccccchhhhcccchhhHHHHHHHHHHHHHhhhhh
Q psy15562 268 DEMGNEMECTESKLDATMKKVAKVLHISNVFCSY 301 (318)
Q Consensus 268 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 301 (318)
--+--|++-.|+.+++++..++.|
T Consensus 193 ----------~~~nk~~~~aii~~l~~~il~ilY 216 (220)
T KOG1666|consen 193 ----------LIRNKFTLTAIIALLVLAILLILY 216 (220)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123456677777666666666655
No 22
>KOG3385|consensus
Probab=73.59 E-value=3.7 Score=34.78 Aligned_cols=56 Identities=25% Similarity=0.467 Sum_probs=43.3
Q ss_pred hhhhhhhhhhhhhcccc-cccccccccccccccCCCCChhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q psy15562 148 QQDSQLDMLSETIGTLT-VQVRRQTKYSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDM----LSETIGTLKTVSRN 222 (318)
Q Consensus 148 ~qd~ql~~v~~sig~~k-~s~~~~~~y~~l~~~~~~~n~~fi~~elq~Qq~~m~eQDe~Ld~----Ls~sV~~Lk~~a~~ 222 (318)
+-+++++.+...|..+| -+ -+|+.+...|.++|+..|.+.|. |+++++|++.||..
T Consensus 33 ENee~~e~L~~kV~aLKsLs-------------------~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~ 93 (118)
T KOG3385|consen 33 ENEEAAESLQQKVKALKSLS-------------------LDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR 93 (118)
T ss_pred hhHHHHHHHHHHHHHHHHHH-------------------HHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc
Confidence 34566777777777666 22 45777788899999999888875 78899999999976
No 23
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=65.05 E-value=51 Score=28.30 Aligned_cols=55 Identities=15% Similarity=0.389 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHH
Q psy15562 204 SQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKV 258 (318)
Q Consensus 204 e~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~v 258 (318)
+.|+.|...+....++...|.+|+.+=..=++.+..+++..+..+..--.||..+
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777666666666777766666666655555543
No 24
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=64.49 E-value=20 Score=25.33 Aligned_cols=52 Identities=19% Similarity=0.364 Sum_probs=31.5
Q ss_pred Hhhhhhhhhhhhhhhhhcccc-cccccccccccccccCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15562 144 AMFDQQDSQLDMLSETIGTLT-VQVRRQTKYSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIG 214 (318)
Q Consensus 144 ll~~~qd~ql~~v~~sig~~k-~s~~~~~~y~~l~~~~~~~n~~fi~~elq~Qq~~m~eQDe~Ld~Ls~sV~ 214 (318)
.++.+++..++.+...++.++ +. .-++.++..|..+++.-+..++.....+.
T Consensus 5 ~~~~~~~~~l~~l~~~i~~l~~l~-------------------~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~ 57 (66)
T smart00397 5 QMEEERDEELEQLEKSIGELKQIF-------------------LDMGTELEEQGEQLDRIEDNVDDADVNLK 57 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345677888888888876543 22 23455556666666666666655555444
No 25
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=61.59 E-value=72 Score=24.89 Aligned_cols=49 Identities=22% Similarity=0.387 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHhHHHHhhhhhhh
Q psy15562 201 QQDSQLDMLSETIGTLKTVSRNIGSE----LDEQALMLDEMGNEMECTESKLD 249 (318)
Q Consensus 201 eQDe~Ld~Ls~sV~~Lk~~a~~Ig~E----L~eQn~mLDdL~~~vD~t~~rL~ 249 (318)
...+-|+.+..++..+......|-.| +.+.|.++++++..++.++.-..
T Consensus 23 ~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~ 75 (90)
T PF06103_consen 23 KLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFE 75 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33444555555555555444444444 45677777777777666554433
No 26
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=57.64 E-value=26 Score=24.41 Aligned_cols=17 Identities=35% Similarity=0.702 Sum_probs=11.0
Q ss_pred hhhhhhhhhhhhhcccc
Q psy15562 148 QQDSQLDMLSETIGTLT 164 (318)
Q Consensus 148 ~qd~ql~~v~~sig~~k 164 (318)
+++.+++.+..+++.++
T Consensus 3 e~~~~l~~l~~~i~~l~ 19 (60)
T cd00193 3 ERDEELEQLEASIGELK 19 (60)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45666777777776543
No 27
>PHA02414 hypothetical protein
Probab=56.25 E-value=51 Score=27.30 Aligned_cols=34 Identities=38% Similarity=0.495 Sum_probs=26.6
Q ss_pred chhhHHHHHHHHHHHHHhHHhc--------------HHHHHHHHHHHH
Q psy15562 29 LRDELEWTTTELRNSLRSIEWD--------------LEDLEDTINILY 62 (318)
Q Consensus 29 s~~El~~~~~EL~~~l~siE~D--------------LeDL~esI~ivE 62 (318)
+++||..+-+|||..+-||..| ++-|++.|++.+
T Consensus 30 dn~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~aL~ 77 (111)
T PHA02414 30 DNKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKISALA 77 (111)
T ss_pred chHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHHHHH
Confidence 6899999999999999888765 455666666554
No 28
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=54.50 E-value=25 Score=29.20 Aligned_cols=30 Identities=33% Similarity=0.529 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15562 191 SINQQSAMFDQQDSQLDMLSETIGTLKTVS 220 (318)
Q Consensus 191 elq~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a 220 (318)
.++.|..||.+|.+.+|.|+.+|+.|.+--
T Consensus 83 Lm~rQN~mm~~qqqsidslsksvgklahkv 112 (121)
T PF10669_consen 83 LMNRQNNMMKQQQQSIDSLSKSVGKLAHKV 112 (121)
T ss_pred HHHHHhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 468899999999999999999999886543
No 29
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=53.43 E-value=1e+02 Score=23.85 Aligned_cols=10 Identities=20% Similarity=0.537 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q psy15562 205 QLDMLSETIG 214 (318)
Q Consensus 205 ~Ld~Ls~sV~ 214 (318)
.+..+...|.
T Consensus 4 kl~~i~~~v~ 13 (89)
T PF00957_consen 4 KLEQIQEQVE 13 (89)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 30
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=47.14 E-value=3.2e+02 Score=29.18 Aligned_cols=48 Identities=21% Similarity=0.378 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhhhcccCccchhhHHHHHHHHHHHHHhHHhcHHHHHHHHHHHHhCCce
Q psy15562 7 NKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINILYNNFDF 67 (318)
Q Consensus 7 ~~~~~ly~Rw~~L~~~~~~~~~s~~El~~~~~EL~~~l~siE~DLeDL~esI~ivE~nP~f 67 (318)
.+.+..|++|+.+...- .++..-..|+..-+.-++++|++|+ +-||.-
T Consensus 157 ~~~~~~y~~w~~~~~~l-------~~~~~~~~e~~~~~d~L~fq~~Ele------~~~l~~ 204 (557)
T COG0497 157 EAYQEAYQAWKQARREL-------EDLQEKERERAQRADLLQFQLEELE------ELNLQP 204 (557)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH------hcCCCC
Confidence 45778999999876544 3666677788899999999999998 677753
No 31
>PRK11637 AmiB activator; Provisional
Probab=46.47 E-value=2.2e+02 Score=28.63 Aligned_cols=60 Identities=20% Similarity=0.196 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHh
Q psy15562 201 QQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLH 260 (318)
Q Consensus 201 eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~ 260 (318)
+...+|+.|...+..+...-..+..+|...+.=|+.+...++..+.+|....+.+...++
T Consensus 72 ~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 72 SLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555556666666666666666677777777666666666655
No 32
>KOG3208|consensus
Probab=45.98 E-value=2.7e+02 Score=26.38 Aligned_cols=58 Identities=12% Similarity=0.171 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhh
Q psy15562 204 SQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHI 261 (318)
Q Consensus 204 e~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~ 261 (318)
.+|+.=...|..+=.+|..-.+-+..|..+|..+.+.|-.+..|+-.++.-|.++-.+
T Consensus 149 ~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~k 206 (231)
T KOG3208|consen 149 DHINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIK 206 (231)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 4556666667777888999999999999999999999999999999999888887443
No 33
>PRK11637 AmiB activator; Provisional
Probab=45.29 E-value=2.2e+02 Score=28.68 Aligned_cols=69 Identities=12% Similarity=0.131 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhcC
Q psy15562 195 QSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISN 263 (318)
Q Consensus 195 Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s~ 263 (318)
++.-+.+...++..+...+..+...-..+..+|+....-|..++..++.++..|.....++...-..=.
T Consensus 59 ~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 59 KEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555666667777777777777777777777777777766655433
No 34
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=43.09 E-value=2e+02 Score=24.71 Aligned_cols=45 Identities=13% Similarity=0.320 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhh
Q psy15562 201 QQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTE 245 (318)
Q Consensus 201 eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~ 245 (318)
+|.+--..+..-|..++.=-..|+.+++.=..+...|+..+++.+
T Consensus 79 e~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 79 EQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333334444444444455666777776777777777666544
No 35
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=42.52 E-value=1.5e+02 Score=22.42 Aligned_cols=49 Identities=10% Similarity=0.233 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHH
Q psy15562 203 DSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDAT 251 (318)
Q Consensus 203 De~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~ 251 (318)
++.|+.|...+.-+-..-...++.|-.|...|+.|...+.....||...
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555655555556666666666666666666666665555543
No 36
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=42.04 E-value=1.8e+02 Score=26.01 Aligned_cols=74 Identities=14% Similarity=0.271 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhcC
Q psy15562 190 NSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISN 263 (318)
Q Consensus 190 ~elq~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s~ 263 (318)
..++.....+.+....|..|-..+..|+.-......||.+.+..+..|.+.+...+-.++.+-.|+.++-.-+.
T Consensus 102 ~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~ 175 (194)
T PF08614_consen 102 DELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENR 175 (194)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677788889999999999999999999999999999999999999999999999999999998876654
No 37
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=41.25 E-value=65 Score=23.13 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHHHHHhHHhcHHHHHHHHH-----HHHhCCce
Q psy15562 30 RDELEWTTTELRNSLRSIEWDLEDLEDTIN-----ILYNNFDF 67 (318)
Q Consensus 30 ~~El~~~~~EL~~~l~siE~DLeDL~esI~-----ivE~nP~f 67 (318)
.+|+..+-.+.+..+..-...+.||++-|+ |+|.+|.-
T Consensus 2 ~eeL~~~l~~~e~~~~~k~~~v~eLe~YiD~LL~rVmE~~P~I 44 (48)
T PF09457_consen 2 REELISLLKKQEEENARKDSRVRELEDYIDNLLVRVMEQTPSI 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-GGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 456666667777777776666666777665 78999864
No 38
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=41.10 E-value=2.4e+02 Score=26.41 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhH-----HHHhhhhhhhHHHHHHHHHHhhcCCcccc
Q psy15562 194 QQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGN-----EMECTESKLDATMKKVAKVLHISNGEMLD 268 (318)
Q Consensus 194 ~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~-----~vD~t~~rL~~~~kkl~~vl~~s~~r~c~ 268 (318)
.....+.+.+.+|..|+.++..|-..-..++.=+.+=...|..|++ .+.++-+.|..+..++..+..........
T Consensus 26 ~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~~ls~~l~~laev~~ki~~~~~~qa~~d~~ 105 (234)
T cd07664 26 EKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQDQAFADFY 105 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4678899999999999999999988888887777776665555554 34455556666666666666655444333
Q ss_pred ccc
Q psy15562 269 EMG 271 (318)
Q Consensus 269 ~~~ 271 (318)
.|+
T Consensus 106 ~l~ 108 (234)
T cd07664 106 LFS 108 (234)
T ss_pred HHH
Confidence 333
No 39
>KOG3894|consensus
Probab=41.09 E-value=2e+02 Score=28.40 Aligned_cols=67 Identities=6% Similarity=0.109 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhcCCc
Q psy15562 199 FDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNGE 265 (318)
Q Consensus 199 m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s~~r 265 (318)
+.+|++....+...|-.+-.+-..|-+=|-.|..=+|-+-+.+.++...+..++.-+++..+.+++-
T Consensus 227 ~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~ 293 (316)
T KOG3894|consen 227 LNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGL 293 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccc
Confidence 3444455555555555555566677888889999999999999999999999999999998877653
No 40
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=40.24 E-value=1.9e+02 Score=23.09 Aligned_cols=54 Identities=22% Similarity=0.347 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHh
Q psy15562 207 DMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLH 260 (318)
Q Consensus 207 d~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~ 260 (318)
+.+..-|.+|..-=..+-.||+....=+..|...-..+..||..++..+.-|+.
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL~ 88 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVLD 88 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444445555554445566677777766777777777777777777777776653
No 41
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=39.14 E-value=1.5e+02 Score=22.61 Aligned_cols=58 Identities=21% Similarity=0.313 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCc----cchhhHHHHHHHHHHHHHhHHhcHHHHHHHHH
Q psy15562 2 VSKAINKTRSLYKRWLELKEETYASN----ILRDELEWTTTELRNSLRSIEWDLEDLEDTIN 59 (318)
Q Consensus 2 V~~sl~~~~~ly~Rw~~L~~~~~~~~----~s~~El~~~~~EL~~~l~siE~DLeDL~esI~ 59 (318)
|...|..+.....+.+.|-...-+++ ..+.|+..++.|+......+...|..|...+.
T Consensus 12 i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~ 73 (103)
T PF00804_consen 12 IREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNE 73 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555544433221111 13567778888888888888888888776654
No 42
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=38.71 E-value=1.4e+02 Score=24.00 Aligned_cols=45 Identities=13% Similarity=0.256 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhh
Q psy15562 205 QLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLD 249 (318)
Q Consensus 205 ~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~ 249 (318)
+++.|+.-|..|+.....+..++..=..=.+.--++..|+..||+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiD 69 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLD 69 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444444444444444444444444333333333333444444443
No 43
>PRK09546 zntB zinc transporter; Reviewed
Probab=38.60 E-value=3.7e+02 Score=25.85 Aligned_cols=20 Identities=15% Similarity=0.393 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhh--hhcccc
Q psy15562 286 KKVAKVLHISNVFC--SYEMNL 305 (318)
Q Consensus 286 ~~~~~~~~~~~~~~--~~~~~~ 305 (318)
.+++.+||+-.-|+ .|-||.
T Consensus 267 Ltilt~IflPlT~IaGiyGMNf 288 (324)
T PRK09546 267 MSLMAMVFLPTTFLTGLFGVNL 288 (324)
T ss_pred HHHHHHHHHHHHHHHhhhcccc
Confidence 45777888887777 799995
No 44
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=38.55 E-value=98 Score=24.35 Aligned_cols=54 Identities=17% Similarity=0.302 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHhHHHHhhhhhhh
Q psy15562 196 SAMFDQQDSQLDMLSETIGTLKTVSRN---IGSELDEQALMLDEMGNEMECTESKLD 249 (318)
Q Consensus 196 q~~m~eQDe~Ld~Ls~sV~~Lk~~a~~---Ig~EL~eQn~mLDdL~~~vD~t~~rL~ 249 (318)
..-+..-|...+.|.+.|..++.--.. |+.=|+.|..-|++|++.|..-+.-|+
T Consensus 10 r~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 10 RQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445677888888888888888776555 777788888888888887776665554
No 45
>PRK09039 hypothetical protein; Validated
Probab=38.35 E-value=3.3e+02 Score=26.85 Aligned_cols=67 Identities=12% Similarity=0.239 Sum_probs=58.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHH
Q psy15562 188 VSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKK 254 (318)
Q Consensus 188 i~~elq~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kk 254 (318)
....+..+.....+...++..|..-|..||.+=..+..+|+.......+....++..+.+|+.+..+
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888999999999999999999999999999999999998899999999999999988733
No 46
>PRK00846 hypothetical protein; Provisional
Probab=38.01 E-value=2e+02 Score=22.66 Aligned_cols=48 Identities=10% Similarity=0.081 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHH
Q psy15562 204 SQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDAT 251 (318)
Q Consensus 204 e~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~ 251 (318)
+.|+.|...+.-+-..-...++.|-.|...|+.|...+.....||..+
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666666666666666666666666665555555443
No 47
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=37.79 E-value=2.1e+02 Score=25.62 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhcCC
Q psy15562 202 QDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNG 264 (318)
Q Consensus 202 QDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s~~ 264 (318)
..+..+.+...+..|+.....+..+++.....|.+|.+.+..-...|.....++..++...++
T Consensus 101 d~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g 163 (184)
T PF05791_consen 101 DQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENG 163 (184)
T ss_dssp HHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccC
Confidence 557788999999999999999999999999999999999999999999999999998887654
No 48
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=37.24 E-value=2.7e+02 Score=25.35 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHh--HHHHhhhhhhhHHHHHHHHHHhhcCCc
Q psy15562 193 NQQSAMFDQQDSQLDMLSETIGTLKTVSRNIG---SELDEQALMLDEMG--NEMECTESKLDATMKKVAKVLHISNGE 265 (318)
Q Consensus 193 q~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig---~EL~eQn~mLDdL~--~~vD~t~~rL~~~~kkl~~vl~~s~~r 265 (318)
..+...+.+.+.+|..++..+..+-.--..++ .|+...-.+|..++ ..+.++-.++..+..++..+...-.+.
T Consensus 7 ~~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~~a~~ 84 (216)
T cd07627 7 IEKKQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLERQALQ 84 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999887764443333 46777888888887 678888888888888888887764433
No 49
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=36.75 E-value=1.9e+02 Score=24.14 Aligned_cols=62 Identities=11% Similarity=0.176 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhh
Q psy15562 200 DQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHI 261 (318)
Q Consensus 200 ~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~ 261 (318)
+.-...|..|...|..|..+-..++...+....+=+.|+..++.+..+...+..+|+.+-..
T Consensus 9 ~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~ 70 (151)
T cd00179 9 EEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEES 70 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777777777776344677788888888888888888888876544
No 50
>PRK02119 hypothetical protein; Provisional
Probab=36.44 E-value=2e+02 Score=22.16 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhh
Q psy15562 200 DQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKL 248 (318)
Q Consensus 200 ~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL 248 (318)
....+.|+.|...|.-+-..-...++.|-.|...|+.|...+.....+|
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666666666666666666666666666666655544444333
No 51
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=35.55 E-value=1.3e+02 Score=26.24 Aligned_cols=66 Identities=21% Similarity=0.409 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH----HHHHHHhHHHHhHHHHhhhhhhhHHHHHH
Q psy15562 190 NSINQQSAMFDQQDSQLDMLSETIGTLKTVSR---NIGSE----LDEQALMLDEMGNEMECTESKLDATMKKV 255 (318)
Q Consensus 190 ~elq~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~---~Ig~E----L~eQn~mLDdL~~~vD~t~~rL~~~~kkl 255 (318)
++.-..|+++.+-...||.+.++++.|-.+|. ....| ..+||.||.++....+...+.|+.-.-|+
T Consensus 38 deilknq~lln~is~kldging~l~dliaqgnln~el~ke~lkianeqn~~ln~vn~~l~~in~~l~~ylpki 110 (177)
T PF12495_consen 38 DEILKNQQLLNQISDKLDGINGSLNDLIAQGNLNSELSKEILKIANEQNQMLNNVNNQLNSINSMLNTYLPKI 110 (177)
T ss_pred HHHHHhHHHHHHhcccccccCCcHHHHHHcCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34444567888899999999999987754432 22223 37999999999999998887776544443
No 52
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=34.35 E-value=3.3e+02 Score=26.69 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhh--hhcccc
Q psy15562 288 VAKVLHISNVFC--SYEMNL 305 (318)
Q Consensus 288 ~~~~~~~~~~~~--~~~~~~ 305 (318)
++.++|+..-|+ .|-||.
T Consensus 261 v~s~if~pptliagiyGMNf 280 (316)
T PRK11085 261 VVSVVFLPPTLVASSYGMNF 280 (316)
T ss_pred HHHHHHHHHHHHHhhccccc
Confidence 455667766666 788994
No 53
>KOG0964|consensus
Probab=33.90 E-value=4.1e+02 Score=30.55 Aligned_cols=78 Identities=14% Similarity=0.246 Sum_probs=49.1
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhh
Q psy15562 184 NRSWVSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHI 261 (318)
Q Consensus 184 n~~fi~~elq~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~ 261 (318)
-|.||..++..=...+..--++-+.|..-+..++..=..+.+|+.+.+.=|++....|+..........++...+..+
T Consensus 391 RDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~ 468 (1200)
T KOG0964|consen 391 RDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDK 468 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 347777776666666666666666666666666666666666666666666666666666666655555555555443
No 54
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=33.89 E-value=2e+02 Score=21.42 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy15562 206 LDMLSETIGTLKTVSRNIGSELD 228 (318)
Q Consensus 206 Ld~Ls~sV~~Lk~~a~~Ig~EL~ 228 (318)
+|.|+.-|..|..--..+..++.
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~ 27 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVN 27 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555444444444443
No 55
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=33.32 E-value=3.9e+02 Score=25.24 Aligned_cols=71 Identities=7% Similarity=0.081 Sum_probs=33.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHh
Q psy15562 186 SWVSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSR--NIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLH 260 (318)
Q Consensus 186 ~fi~~elq~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~--~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~ 260 (318)
.++.......+.+ -.....|..+...+.+|..-.. .+. ++....+.++.+++++....++....++..+..
T Consensus 172 ~~l~~l~~l~~~l-~~l~~~l~~~~~vl~~l~~~~~~~~~~---~~~~~~~~dv~~~~~~l~~~~~~~~e~l~~l~d 244 (318)
T TIGR00383 172 TLMDEILSLRTEL-LALRRSLWPLRDVLNFLLRKTHLPIQT---EEVREYLRDIYDHILSLLEMIETYRELLSSLMD 244 (318)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCcccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433333333 3455555555555555543210 111 223344555555555555555555555555444
No 56
>PRK04654 sec-independent translocase; Provisional
Probab=33.22 E-value=2.4e+02 Score=26.45 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15562 206 LDMLSETIGTLKTVSRNIGSELDEQ 230 (318)
Q Consensus 206 Ld~Ls~sV~~Lk~~a~~Ig~EL~eQ 230 (318)
.-.|+..|+.+|.+...+.+|+++.
T Consensus 29 aRtlGk~irk~R~~~~~vk~El~~E 53 (214)
T PRK04654 29 ARFAGLWVRRARMQWDSVKQELERE 53 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555555555555555555443
No 57
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=31.96 E-value=4e+02 Score=24.33 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHH
Q psy15562 197 AMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKV 258 (318)
Q Consensus 197 ~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~v 258 (318)
.-+...-.-|.....++.+...++..-..||.++..||+.-...|+.....|..+..-+.+.
T Consensus 109 ~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~t 170 (188)
T PF05335_consen 109 QQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKT 170 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556667888889999999999999999999999999999999999999988888777654
No 58
>KOG3065|consensus
Probab=31.53 E-value=4.3e+02 Score=25.60 Aligned_cols=77 Identities=8% Similarity=0.036 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhcCCccccc
Q psy15562 193 NQQSAMFDQQDSQLDMLSETIG---TLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNGEMLDE 269 (318)
Q Consensus 193 q~Qq~~m~eQDe~Ld~Ls~sV~---~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s~~r~c~~ 269 (318)
..++.+.....+.|+....++. .-+..|..--.+|.+|.+.|+.++..+|.-..-|+.+-+.+..+-+-.+.-||.+
T Consensus 65 ~l~~e~~~~~~eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~~~g~~~~p~ 144 (273)
T KOG3065|consen 65 ELEQEIESTAQESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKGLFGLLVKPF 144 (273)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHhcccCCcc
Confidence 4455666666777777776665 5677788888999999999999999999999999999999998877766545533
No 59
>KOG2629|consensus
Probab=31.43 E-value=1.6e+02 Score=28.91 Aligned_cols=55 Identities=24% Similarity=0.329 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCccchhhHHHHHHHHHHHHHhHHhcHHHHHHHHHHHH
Q psy15562 2 VSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINILY 62 (318)
Q Consensus 2 V~~sl~~~~~ly~Rw~~L~~~~~~~~~s~~El~~~~~EL~~~l~siE~DLeDL~esI~ivE 62 (318)
|+++|+.+...-.+.+++.... ..|+..+-.+|.+++..+..+++.|+.=|+++-
T Consensus 134 ~~~~~~~l~~~va~v~q~~~~q------q~Els~~L~~l~~~~~~~s~~~~k~esei~~Ik 188 (300)
T KOG2629|consen 134 AAKSLNALMDEVAQVSQLLATQ------QSELSRALASLKNTLVQLSRNIEKLESEINTIK 188 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5677777777777777776555 348888888999998888888888887777764
No 60
>PRK04325 hypothetical protein; Provisional
Probab=30.91 E-value=2.5e+02 Score=21.64 Aligned_cols=44 Identities=9% Similarity=0.154 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhh
Q psy15562 204 SQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESK 247 (318)
Q Consensus 204 e~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~r 247 (318)
+.|+.|...|.-+-..-...++.|-.|...|+.|...+.....|
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~r 52 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQ 52 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555555555555566666666665555444443333
No 61
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=30.85 E-value=1.7e+02 Score=24.72 Aligned_cols=52 Identities=27% Similarity=0.413 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhhhhcccCccchhhHHHHHHHHHHHHHhHHhcHHHHHHHHHHHHhC
Q psy15562 6 INKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINILYNN 64 (318)
Q Consensus 6 l~~~~~ly~Rw~~L~~~~~~~~~s~~El~~~~~EL~~~l~siE~DLeDL~esI~ivE~n 64 (318)
....+..-..|-.+...-+ ..|... .++.+=-+.||.|+..|++++..|...
T Consensus 63 ~~~l~kqt~qw~~~~~~~~------~~LKEi-GDveNWa~~iE~Dl~~i~~~L~~v~~~ 114 (121)
T PF06320_consen 63 TAKLAKQTDQWLKLVDSFN------DALKEI-GDVENWAEMIERDLRVIEETLRYVYEG 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444556776655442 122222 456667889999999999999999754
No 62
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=29.92 E-value=3.3e+02 Score=22.70 Aligned_cols=41 Identities=20% Similarity=0.129 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy15562 196 SAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDE 236 (318)
Q Consensus 196 q~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDd 236 (318)
....+.|.+++..|...+......=..|...|..-+.=||.
T Consensus 59 ~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~ 99 (102)
T PF01519_consen 59 TEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555553333334444444444433333
No 63
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=29.73 E-value=1.3e+02 Score=24.21 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15562 198 MFDQQDSQLDMLSETIGTLKTVSRNIGSEL 227 (318)
Q Consensus 198 ~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL 227 (318)
-|...+..||.|...+..|-+-...|+.+|
T Consensus 27 E~~~ins~LD~Lns~LD~LE~rnD~l~~~L 56 (83)
T PF03670_consen 27 EYAAINSMLDQLNSCLDHLEQRNDHLHAQL 56 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 466666777777666666666555555554
No 64
>PHA03386 P10 fibrous body protein; Provisional
Probab=28.98 E-value=2.6e+02 Score=22.93 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhh
Q psy15562 194 QQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLD 249 (318)
Q Consensus 194 ~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~ 249 (318)
+=..-+..-|..++.|.+.|..++.- ..-|+.|..-|++|++.|..-++-|+
T Consensus 9 ~Ir~dIkavd~KVdaLQ~qV~dv~~n----~~~LDa~~~qL~~l~tkV~~Iq~iLn 60 (94)
T PHA03386 9 QILDAVQEVDTKVDALQTQLNGLEED----SQPLDGLPAQLTELDTKVSDIQSILT 60 (94)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhc----chhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 33556778889999999999988865 55589999999999998887776665
No 65
>PRK15396 murein lipoprotein; Provisional
Probab=28.80 E-value=2.6e+02 Score=22.07 Aligned_cols=29 Identities=10% Similarity=0.251 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15562 204 SQLDMLSETIGTLKTVSRNIGSELDEQAL 232 (318)
Q Consensus 204 e~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~ 232 (318)
...+.+...+..++.-+....+|...=|.
T Consensus 39 ~kvdql~~dv~~~~~~~~~a~~eA~raN~ 67 (78)
T PRK15396 39 AKVDQLSNDVNAMRSDVQAAKDDAARANQ 67 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455444444444444443333
No 66
>PRK01919 tatB sec-independent translocase; Provisional
Probab=28.66 E-value=2.7e+02 Score=25.16 Aligned_cols=27 Identities=7% Similarity=0.147 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15562 205 QLDMLSETIGTLKTVSRNIGSELDEQA 231 (318)
Q Consensus 205 ~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn 231 (318)
-.-.|+..+++++.+..++..|+++..
T Consensus 28 ~aRtlGk~i~k~Rr~~~d~K~ev~~E~ 54 (169)
T PRK01919 28 VARTAGALFGRAQRYINDVKAEVSREI 54 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777776554
No 67
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=28.64 E-value=3e+02 Score=21.78 Aligned_cols=70 Identities=11% Similarity=0.159 Sum_probs=47.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHH
Q psy15562 188 VSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAK 257 (318)
Q Consensus 188 i~~elq~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~ 257 (318)
+...+..|.+++......=.+|..-..-...-=..+..+...+..+|-++-.++|.+..|++.-..++..
T Consensus 13 ~~~~l~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 13 LDEILALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777776555544444443333333334456678889999999999999999998887777653
No 68
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=28.55 E-value=1.9e+02 Score=23.03 Aligned_cols=50 Identities=14% Similarity=0.276 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhcCC
Q psy15562 214 GTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNG 264 (318)
Q Consensus 214 ~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s~~ 264 (318)
.+++.-+.+- -+|..|..+|++-..-+-.+..||..+...|..++....+
T Consensus 31 e~~k~~~~de-~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~~ 80 (90)
T PF02970_consen 31 EKMKAEGEDE-YDIKKQEEVLEETKMMIPDCQQRLEKAVEDLEEFLEEEEG 80 (90)
T ss_dssp HHHHHCTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCcH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHCcC
Confidence 3444444432 3688999999999999999999999999999999886544
No 69
>PRK04406 hypothetical protein; Provisional
Probab=28.26 E-value=2.8e+02 Score=21.46 Aligned_cols=48 Identities=17% Similarity=0.333 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhh
Q psy15562 201 QQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKL 248 (318)
Q Consensus 201 eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL 248 (318)
...+.|+.|...+.-+-..-...++.|-.|...|+.|...+.....||
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566665555555555556666666666665555444443333
No 70
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=25.82 E-value=4.6e+02 Score=24.19 Aligned_cols=65 Identities=14% Similarity=0.251 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhc
Q psy15562 198 MFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHIS 262 (318)
Q Consensus 198 ~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s 262 (318)
-+++-.+.+..+...+.....-....-.|+..-+.-|..|++.++++..||..+..|+..+-+..
T Consensus 9 eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~ 73 (237)
T PF00261_consen 9 ELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRA 73 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34455566666677777777777788888888889999999999999999999999998877654
No 71
>PRK00736 hypothetical protein; Provisional
Probab=24.17 E-value=3.2e+02 Score=20.67 Aligned_cols=43 Identities=14% Similarity=0.282 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhh
Q psy15562 206 LDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKL 248 (318)
Q Consensus 206 Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL 248 (318)
|+.|...+.-+-..-...++.|-.|...|+.|...+.....||
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444445555555555555554444333333
No 72
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=24.02 E-value=3.1e+02 Score=25.65 Aligned_cols=54 Identities=22% Similarity=0.305 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCccchhhHHHHHHHHHHHHHhHHhcHHHHHHHHHHHHh
Q psy15562 4 KAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINILYN 63 (318)
Q Consensus 4 ~sl~~~~~ly~Rw~~L~~~~~~~~~s~~El~~~~~EL~~~l~siE~DLeDL~esI~ivE~ 63 (318)
.-+..|..++.|.+..+..+ ..+.......++..|...+..|.||.+.+.=+..
T Consensus 153 ~El~~A~~LL~~v~~~~~~~------~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~ 206 (264)
T PF06008_consen 153 DELKEAEDLLSRVQKWFQKP------QQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQN 206 (264)
T ss_pred HHHHHHHHHHHHHHHHHhhH------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888877666 2466777888999999999999999988876653
No 73
>PF07799 DUF1643: Protein of unknown function (DUF1643); InterPro: IPR012441 This entry is represented by Bacteriophage D3, Orf41.6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are all sequences found within hypothetical proteins expressed by various bacteria, archaea and phage. The region concerned is approximately 150 residues long.
Probab=23.38 E-value=36 Score=28.55 Aligned_cols=44 Identities=18% Similarity=0.086 Sum_probs=34.8
Q ss_pred CCcccccccchhhhcccchhhHHHHHHHHHHHHHhhhhh-cccccc
Q psy15562 263 NGEMLDEMGNEMECTESKLDATMKKVAKVLHISNVFCSY-EMNLFC 307 (318)
Q Consensus 263 ~~r~c~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 307 (318)
....|.|..+|-++...+.|-|+.++..+.... -|-.+ -+|||-
T Consensus 12 ~~~~~~I~lNPS~A~~~~~D~T~~~~~~~a~~~-gyg~~~i~NLf~ 56 (136)
T PF07799_consen 12 KPPLLFIGLNPSTADAEKDDPTIRRCINFARRW-GYGGVIIVNLFP 56 (136)
T ss_pred CCEEEEEEeCCCCCCCcCCCHHHHHHHHHHhhc-CCCeEEEEEecc
Confidence 345888999999999999999999999998655 44444 458874
No 74
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=23.37 E-value=4.2e+02 Score=26.52 Aligned_cols=65 Identities=15% Similarity=0.246 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhh--hhhHHHHHHHHHHh
Q psy15562 196 SAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTES--KLDATMKKVAKVLH 260 (318)
Q Consensus 196 q~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~--rL~~~~kkl~~vl~ 260 (318)
+.-+.+--+.....+++|..+.+.=..|.+||+....-|++=+..|..+.- +++.|..||+.=++
T Consensus 279 ~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~ 345 (359)
T PF10498_consen 279 QDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIK 345 (359)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 344555556667778888877777777889999888888888888888877 77888888875443
No 75
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=23.08 E-value=3.9e+02 Score=21.27 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q psy15562 5 AINKTRSLYKRWLELKEET 23 (318)
Q Consensus 5 sl~~~~~ly~Rw~~L~~~~ 23 (318)
.|+.+..+|..|+.+....
T Consensus 27 ~vd~i~~ld~~~r~l~~~~ 45 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQEL 45 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4566677888888776543
No 76
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=22.54 E-value=3.3e+02 Score=26.70 Aligned_cols=87 Identities=18% Similarity=0.241 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhcCCcccccccchhhhcccchhhHH
Q psy15562 206 LDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNGEMLDEMGNEMECTESKLDATM 285 (318)
Q Consensus 206 Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s~~r~c~~~~~~~~~~~~k~~~~~ 285 (318)
|......+..+..-=.....+++....=...|...++.+..||.++.+=+.-+ .....||-.....+ .--+
T Consensus 237 L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L-~~E~~RW~~~~~~l--------~~~~ 307 (344)
T PF12777_consen 237 LAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGL-SGEKERWSEQIEEL--------EEQL 307 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHCCHCHHHHH--------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhh-cchhhhHHHHHHHH--------HHHh
Confidence 33333333333333333444555555556778888888999998887755433 22334555433322 2233
Q ss_pred HHHHHHHHHHHhhhhh
Q psy15562 286 KKVAKVLHISNVFCSY 301 (318)
Q Consensus 286 ~~~~~~~~~~~~~~~~ 301 (318)
..+.+=.+|..-|++|
T Consensus 308 ~~l~GD~llaaa~isY 323 (344)
T PF12777_consen 308 KNLVGDSLLAAAFISY 323 (344)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHH
Confidence 4444445555666665
No 77
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=22.45 E-value=5.7e+02 Score=24.87 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=37.8
Q ss_pred HHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhcC--CcccccccchhhhcccchhhHHH
Q psy15562 227 LDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISN--GEMLDEMGNEMECTESKLDATMK 286 (318)
Q Consensus 227 L~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s~--~r~c~~~~~~~~~~~~k~~~~~~ 286 (318)
+.....-+.+|..+++-+...+..+..++...--... ...-.++.++.-......+..+.
T Consensus 273 l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~~~~~~~~vi~~p~~P~~p~~P~~~~ 334 (362)
T TIGR01010 273 LNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEADRQQLYLEVISQPSLPDDALEPYRLY 334 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeeeeCCCCCCCcCCChHHH
Confidence 3344455778899999999999999988887754332 22444455555444444544443
No 78
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=22.20 E-value=5.8e+02 Score=25.40 Aligned_cols=41 Identities=22% Similarity=0.257 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHH
Q psy15562 200 DQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEM 241 (318)
Q Consensus 200 ~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~v 241 (318)
...+.-...|=..|.||+.+. .+|.+..+=...|..|+...
T Consensus 305 ~~~~~~~~~lP~lv~RL~tL~-~lH~~a~~~~~~l~~le~~q 345 (388)
T PF04912_consen 305 PRWDPYAPSLPSLVERLKTLK-SLHEEAAEFSQTLSELESQQ 345 (388)
T ss_pred HHHHHHhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444432 24444444444444444333
No 79
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=22.19 E-value=4.8e+02 Score=24.68 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHhH
Q psy15562 188 VSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDE----QALMLDEMGN 239 (318)
Q Consensus 188 i~~elq~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~e----Qn~mLDdL~~ 239 (318)
++..+..+.+.+-+.-.+|+.|..-|.+||..-.....||+. |..+--+||.
T Consensus 45 le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 45 LERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666777777888999999999999888888887755 4444444444
No 80
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=22.06 E-value=3.8e+02 Score=26.09 Aligned_cols=56 Identities=14% Similarity=0.242 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhhhhcccCccchhhHHHHHHHHHH---HHHhHHhcHHHHHHHHHHHHh
Q psy15562 5 AINKTRSLYKRWLELKEETYASNILRDELEWTTTELRN---SLRSIEWDLEDLEDTINILYN 63 (318)
Q Consensus 5 sl~~~~~ly~Rw~~L~~~~~~~~~s~~El~~~~~EL~~---~l~siE~DLeDL~esI~ivE~ 63 (318)
.+..++..|.|.+.|.... ..+..|+..+..++.. .++.++..++.+...+..+..
T Consensus 121 ~l~~a~~~~~r~~~L~~~g---~is~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 179 (370)
T PRK11578 121 ELKLARVTLSRQQRLAKTQ---AVSQQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKT 179 (370)
T ss_pred HHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566799999998766 3577888888877653 455566666666555555543
No 81
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=21.48 E-value=6.9e+02 Score=23.51 Aligned_cols=102 Identities=12% Similarity=0.132 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHhH--HHHhhhhhhhHHHHHHHHHHhhcCCcccc
Q psy15562 194 QQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQA---LMLDEMGN--EMECTESKLDATMKKVAKVLHISNGEMLD 268 (318)
Q Consensus 194 ~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn---~mLDdL~~--~vD~t~~rL~~~~kkl~~vl~~s~~r~c~ 268 (318)
.+...+...+.+|..|..++..|-..-..++.=+.+=. .+|...+. .+-++-+.|..+..++..+.......-+.
T Consensus 26 ~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~Ls~als~laev~~~i~~~~~~qa~qd~~ 105 (234)
T cd07665 26 EKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFF 105 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999988777777776555555 46665554 25566667778888888887776666555
Q ss_pred cccchhhhcccchhhHHHHHHHHHHHHHhhhhhccccc
Q psy15562 269 EMGNEMECTESKLDATMKKVAKVLHISNVFCSYEMNLF 306 (318)
Q Consensus 269 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (318)
.|+ -+|.--++.|--+-..|.--+++|
T Consensus 106 ~f~-----------e~l~eYiRli~SVK~~f~~R~k~~ 132 (234)
T cd07665 106 LLA-----------ELLADYIRLLSAVRGAFDQRMKTW 132 (234)
T ss_pred HHh-----------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 344455555554444444444444
No 82
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=21.22 E-value=7.1e+02 Score=23.61 Aligned_cols=24 Identities=8% Similarity=0.210 Sum_probs=11.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q psy15562 186 SWVSNSINQQSAMFDQQDSQLDML 209 (318)
Q Consensus 186 ~fi~~elq~Qq~~m~eQDe~Ld~L 209 (318)
+|.......|...++-.-+.|+.+
T Consensus 86 df~~~~~k~~~dF~~~Lq~~Lk~V 109 (230)
T PF03904_consen 86 DFIDKTEKVHNDFQDILQDELKDV 109 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344334444444444444445444
No 83
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=20.95 E-value=6e+02 Score=25.00 Aligned_cols=38 Identities=18% Similarity=0.414 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy15562 197 AMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEM 237 (318)
Q Consensus 197 ~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL 237 (318)
.-+...|+ .|.+.|..+-..+..||.+|.+|..++...
T Consensus 44 ~sV~afD~---~i~~~l~~f~~~S~~igg~V~~~a~~v~~a 81 (312)
T PF01213_consen 44 PSVEAFDE---LINGPLKPFVELSKKIGGDVAEQAQLVKKA 81 (312)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred chHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34556664 377888888888889998888888766543
No 84
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=20.39 E-value=84 Score=30.45 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhhhhcccCccchhhHHHHHHHHHHHHHhHHhcHHHHHHHHHHHHhCCceeeecccccch
Q psy15562 6 INKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINILYNNFDFIEHLCMKDTM 77 (318)
Q Consensus 6 l~~~~~ly~Rw~~L~~~~~~~~~s~~El~~~~~EL~~~l~siE~DLeDL~esI~ivE~nP~f~~i~e~k~~~ 77 (318)
+.+++..|..|-..+.+.-...+.+||+......|-++.-.+-....++.+-+--.-.=|-+-+|+++.++.
T Consensus 210 ~~s~re~~d~Wi~~ae~~~~~~~~S~ef~~~~g~~~~a~m~~r~~~~~~~e~~L~~l~lPTr~evd~l~k~l 281 (293)
T PF09712_consen 210 IKSWREFYDIWIDAAEEAYEELFRSEEFAQAYGQLVNALMDLRKQQQEVVEEYLRSLNLPTRSEVDELYKRL 281 (293)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 456788999999998877666778899999999999999999988888877666555567665565555543
No 85
>KOG2196|consensus
Probab=20.11 E-value=5.5e+02 Score=24.64 Aligned_cols=30 Identities=10% Similarity=0.226 Sum_probs=23.9
Q ss_pred HHhHHHHhHHHHhhhhhhhHHHHHHHHHHh
Q psy15562 231 ALMLDEMGNEMECTESKLDATMKKVAKVLH 260 (318)
Q Consensus 231 n~mLDdL~~~vD~t~~rL~~~~kkl~~vl~ 260 (318)
-.|.++|+..+++...-|+...+.|+.+-+
T Consensus 177 y~~a~nidsqLk~l~~dL~~ii~~lN~~~~ 206 (254)
T KOG2196|consen 177 YKMAENIDSQLKRLSEDLKQIIKSLNTMSK 206 (254)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhccC
Confidence 368888888888888888888888875443
No 86
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=20.04 E-value=4.4e+02 Score=20.73 Aligned_cols=61 Identities=7% Similarity=0.173 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHh
Q psy15562 200 DQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLH 260 (318)
Q Consensus 200 ~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~ 260 (318)
++-...|..|...|..|+.+-..++...+.-..+=+.|+..++.+.........+|+.+-+
T Consensus 11 ~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~ 71 (117)
T smart00503 11 EEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEK 71 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666776666666666555422344566677777777777777777766544
Done!