Query psy15562
Match_columns 318
No_of_seqs 224 out of 667
Neff 5.5
Searched_HMMs 29240
Date Sat Aug 17 00:27:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nps_D Syntaxin-6; vesicle fus 99.7 2E-18 6.7E-23 135.0 7.2 75 191-265 6-80 (82)
2 4dnd_A Syntaxin-10, SYN10; str 99.7 4E-19 1.4E-23 150.2 3.5 79 1-85 35-113 (130)
3 1gl2_D Syntaxin 8, vesicle tra 99.6 2.4E-16 8.2E-21 117.8 6.9 64 197-260 2-65 (65)
4 1n7s_D SNAP-25A; neuronal snar 99.6 1E-14 3.5E-19 109.2 8.3 63 198-260 4-66 (66)
5 1sfc_D Protein (SNAP-25B), pro 99.5 1.5E-14 5E-19 114.3 8.7 67 195-261 20-86 (87)
6 1l4a_D S-SNAP25 fusion protein 99.5 7.2E-14 2.5E-18 110.4 7.2 65 197-261 23-87 (87)
7 3b5n_D Protein transport prote 99.3 5E-12 1.7E-16 94.5 8.3 60 198-257 4-63 (64)
8 2c5k_T Syntaxin TLG1, T-snare 98.4 7.7E-08 2.6E-12 77.0 3.1 67 1-83 14-80 (95)
9 3hd7_B Syntaxin-1A; membrane p 97.8 0.0003 1E-08 57.1 12.8 66 195-260 12-77 (109)
10 1jth_B Syntaxin 1A; coiled-coi 96.9 0.0073 2.5E-07 45.8 9.8 63 198-260 4-66 (77)
11 2nps_D Syntaxin-6; vesicle fus 96.7 0.0026 8.8E-08 49.0 5.7 56 140-214 8-64 (82)
12 1gl2_D Syntaxin 8, vesicle tra 96.2 0.0064 2.2E-07 44.6 5.1 53 144-215 2-55 (65)
13 2nps_B Syntaxin 13, vesicle-as 96.0 0.046 1.6E-06 40.7 9.0 60 202-261 4-63 (71)
14 3b5n_B Protein SSO1; snare com 96.0 0.072 2.5E-06 39.5 9.8 63 198-260 4-66 (69)
15 1gl2_B Syntaxin 7; membrane pr 95.8 0.043 1.5E-06 40.2 8.1 60 198-257 3-62 (65)
16 1sfc_B Protein (syntaxin 1A), 95.6 0.13 4.3E-06 39.5 10.1 66 196-261 13-78 (83)
17 1n7s_B Syntaxin 1A; neuronal s 95.5 0.1 3.5E-06 38.4 9.2 61 198-258 6-66 (68)
18 1sfc_D Protein (SNAP-25B), pro 95.1 0.03 1E-06 43.5 5.3 56 142-216 20-76 (87)
19 1n7s_D SNAP-25A; neuronal snar 94.2 0.1 3.4E-06 38.2 5.9 52 146-216 5-57 (66)
20 1n7s_C SNAP-25A; neuronal snar 93.1 1.4 4.7E-05 33.5 10.8 67 193-259 9-78 (79)
21 1l4a_D S-SNAP25 fusion protein 88.8 0.52 1.8E-05 36.5 4.7 52 145-215 24-76 (87)
22 1l4a_C S-SNAP25 fusion protein 86.0 1.8 6E-05 33.4 6.1 64 193-256 13-79 (83)
23 3b5n_C Protein transport prote 84.8 7.4 0.00025 28.9 8.9 61 198-258 3-66 (70)
24 1nhl_A Synaptosomal-associated 81.9 5.4 0.00018 27.9 6.8 44 213-256 9-52 (54)
25 3b5n_D Protein transport prote 80.9 2.7 9.2E-05 30.7 5.0 49 147-214 6-55 (64)
26 1dn1_B Syntaxin 1A, syntaxin b 79.8 1.1 3.9E-05 41.0 3.3 66 195-260 191-256 (267)
27 1gl2_C VTI1B, vesicle transpor 75.6 9.5 0.00033 27.6 6.7 55 204-258 9-63 (65)
28 2nps_C Vesicle transport throu 74.6 25 0.00085 26.5 10.3 65 197-261 12-76 (81)
29 2xhe_B Syntaxin1; exocytosis, 60.4 1.6 5.4E-05 40.0 -0.4 63 198-260 211-273 (279)
30 3c98_B Syntaxin-1A; protein co 60.3 4.7 0.00016 35.4 2.7 67 194-260 202-268 (279)
31 1ic2_A Tropomyosin alpha chain 36.0 1.3E+02 0.0045 22.2 8.8 56 206-261 22-77 (81)
32 1r48_A Proline/betaine transpo 35.5 25 0.00084 22.4 2.4 18 46-63 5-22 (33)
33 3a7p_A Autophagy protein 16; c 34.7 2.1E+02 0.0072 24.2 9.0 61 203-263 67-127 (152)
34 3oja_A Leucine-rich immune mol 30.6 3.6E+02 0.012 25.6 11.3 74 186-259 410-483 (487)
35 1jcd_A Major outer membrane li 29.2 1.5E+02 0.005 20.7 6.7 18 201-218 8-25 (52)
36 3na7_A HP0958; flagellar bioge 27.6 3.2E+02 0.011 24.1 9.6 55 203-257 31-85 (256)
37 3tso_C RAB11 family-interactin 27.5 1.3E+02 0.0043 22.7 5.4 42 27-68 13-59 (75)
38 1ez3_A Syntaxin-1A; three heli 26.7 2.2E+02 0.0075 22.0 7.3 61 2-62 17-81 (127)
39 2iub_A CORA, divalent cation t 26.3 3.3E+02 0.011 25.2 9.7 10 30-39 82-91 (363)
40 2lw1_A ABC transporter ATP-bin 24.1 69 0.0024 24.1 3.6 29 41-69 21-52 (89)
41 3vkg_A Dynein heavy chain, cyt 22.9 7.5E+02 0.026 30.6 13.6 91 195-301 2026-2116(3245)
42 3efg_A Protein SLYX homolog; x 22.9 2.4E+02 0.0081 21.0 7.2 47 204-250 14-60 (78)
43 1qoy_A Hemolysin E; toxin, mem 22.7 1.9E+02 0.0064 27.3 6.9 78 203-285 22-103 (318)
44 3fpp_A Macrolide-specific effl 22.0 1.5E+02 0.0051 26.7 6.2 57 5-64 91-150 (341)
45 4i0x_B ESAT-6-like protein MAB 21.8 2.5E+02 0.0087 20.9 8.5 33 207-239 14-46 (103)
46 1oxj_A RNA-binding protein sma 21.6 88 0.003 27.1 4.1 64 197-261 33-96 (173)
47 2hv8_D RAB11 family-interactin 21.3 1.7E+02 0.0057 21.3 5.0 41 27-69 22-62 (64)
48 4dk0_A Putative MACA; alpha-ha 21.0 1.9E+02 0.0065 26.2 6.7 57 6-65 93-152 (369)
49 4djg_A Plectin-related protein 20.5 82 0.0028 22.0 3.0 30 34-63 7-41 (52)
50 1m1j_B Fibrinogen beta chain; 20.5 6.2E+02 0.021 24.9 11.2 43 185-227 84-130 (464)
No 1
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=2e-18 Score=134.96 Aligned_cols=75 Identities=45% Similarity=0.698 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhcCCc
Q psy15562 191 SINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNGE 265 (318)
Q Consensus 191 elq~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s~~r 265 (318)
.++.|+++|++||+.||.|+.+|++||++|.+||+||++||.|||+|+++||++.++|..+++|+.+++++++++
T Consensus 6 ~~q~Q~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~ 80 (82)
T 2nps_D 6 SMTGGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDR 80 (82)
T ss_dssp ------------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Confidence 358899999999999999999999999999999999999999999999999999999999999999999998765
No 2
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=99.74 E-value=4e-19 Score=150.25 Aligned_cols=79 Identities=51% Similarity=0.768 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhcccCccchhhHHHHHHHHHHHHHhHHhcHHHHHHHHHHHHhCCceeeecccccchhhh
Q psy15562 1 EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINILYNNFDFIEHLCMKDTMNYS 80 (318)
Q Consensus 1 EV~~sl~~~~~ly~Rw~~L~~~~~~~~~s~~El~~~~~EL~~~l~siE~DLeDL~esI~ivE~nP~f~~i~e~k~~~e~~ 80 (318)
||+++|++++++|.+|..+...++ +++++|+.|+++||+++|++|+|||+||++||.|||+||++|+| +..++.
T Consensus 35 EVq~sl~~l~~l~~~w~~l~~~~~--~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l----~~~Ei~ 108 (130)
T 4dnd_A 35 EVQKAVNTARGLYQRWCELLQESA--AVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKL----PAGDLQ 108 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCC----CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCC----CHHHHH
Confidence 699999999999999999988775 45789999999999999999999999999999999999998887 555566
Q ss_pred hhhcc
Q psy15562 81 REKDR 85 (318)
Q Consensus 81 ~~~~~ 85 (318)
+||+|
T Consensus 109 ~Rr~f 113 (130)
T 4dnd_A 109 ERKVF 113 (130)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66555
No 3
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.64 E-value=2.4e-16 Score=117.81 Aligned_cols=64 Identities=36% Similarity=0.534 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHh
Q psy15562 197 AMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLH 260 (318)
Q Consensus 197 ~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~ 260 (318)
++|++||+.||.|+.+|++||++|.+||+||++||.|||+|++.||++..+|..+++|+.+|++
T Consensus 2 ~~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~k 65 (65)
T 1gl2_D 2 SHMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDR 65 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5899999999999999999999999999999999999999999999999999999999998864
No 4
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=99.55 E-value=1e-14 Score=109.25 Aligned_cols=63 Identities=22% Similarity=0.460 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHh
Q psy15562 198 MFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLH 260 (318)
Q Consensus 198 ~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~ 260 (318)
+-.+||+.|+.|+++|++||++|..||.||+.||.|||+|++.||++..+|..+++|+.++++
T Consensus 4 ~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ll~ 66 (66)
T 1n7s_D 4 RENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLG 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcC
Confidence 557999999999999999999999999999999999999999999999999999999999864
No 5
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.54 E-value=1.5e-14 Score=114.25 Aligned_cols=67 Identities=22% Similarity=0.442 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhh
Q psy15562 195 QSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHI 261 (318)
Q Consensus 195 Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~ 261 (318)
+..+.++||+.|+.|+.+|++||++|.+||.||+.||.|||+|++.||++..+|..+++|+.+|+++
T Consensus 20 ~d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~k 86 (87)
T 1sfc_D 20 NDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS 86 (87)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 3567889999999999999999999999999999999999999999999999999999999999876
No 6
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.47 E-value=7.2e-14 Score=110.41 Aligned_cols=65 Identities=28% Similarity=0.459 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhh
Q psy15562 197 AMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHI 261 (318)
Q Consensus 197 ~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~ 261 (318)
.+..+||+.|+.|+..|++||+||.+||.||+.||.+||+|++.||++..+|..+++|+.+++++
T Consensus 23 ~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~k 87 (87)
T 1l4a_D 23 AREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLKN 87 (87)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC--
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35678999999999999999999999999999999999999999999999999999999998874
No 7
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=99.32 E-value=5e-12 Score=94.50 Aligned_cols=60 Identities=23% Similarity=0.319 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHH
Q psy15562 198 MFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAK 257 (318)
Q Consensus 198 ~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~ 257 (318)
+=++||+.|+.|++.|++||.||.+||.||+.||.+||++...+|++..++..+++||.+
T Consensus 4 ~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 4 MELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 457899999999999999999999999999999999999999999999999999999986
No 8
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=98.44 E-value=7.7e-08 Score=77.00 Aligned_cols=67 Identities=13% Similarity=0.222 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhcccCccchhhHHHHHHHHHHHHHhHHhcHHHHHHHHHHHHhCCceeeecccccchhhh
Q psy15562 1 EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINILYNNFDFIEHLCMKDTMNYS 80 (318)
Q Consensus 1 EV~~sl~~~~~ly~Rw~~L~~~~~~~~~s~~El~~~~~EL~~~l~siE~DLeDL~esI~ivE~nP~f~~i~e~k~~~e~~ 80 (318)
||+.+|+.+++++.+ .+ ++++ .|+++||++.|.+|+|||+||++||.|+|+| ...|+.+|+.++
T Consensus 14 D~~~ql~~l~~~~~~-------~~--~~~~---~~~~~El~~~l~el~e~l~DL~~SI~i~e~~----~~~EI~~Rk~~v 77 (95)
T 2c5k_T 14 DTKEQLNRINNYITR-------HN--TAGD---DDQEEEIQDILKDVEETIVDLDRSIIVMKRD----ENEDVSGREAQV 77 (95)
T ss_dssp HHHHHHHHHHHHHHH-------TC--CC-----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS----TTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------cc--CCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHH
Confidence 467888888887654 11 1123 3999999999999999999999999999999 444555555555
Q ss_pred hhh
Q psy15562 81 REK 83 (318)
Q Consensus 81 ~~~ 83 (318)
...
T Consensus 78 ~~l 80 (95)
T 2c5k_T 78 KNI 80 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 9
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.85 E-value=0.0003 Score=57.12 Aligned_cols=66 Identities=14% Similarity=0.242 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHh
Q psy15562 195 QSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLH 260 (318)
Q Consensus 195 Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~ 260 (318)
.-..+++.++++..|..++..|+++-.+|+..+.+|.+|||.++..++.+...+..+.+.+.+..+
T Consensus 12 ~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~ 77 (109)
T 3hd7_B 12 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 77 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677889999999999999999999999999999999999999999999999999999998844
No 10
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=96.93 E-value=0.0073 Score=45.78 Aligned_cols=63 Identities=14% Similarity=0.260 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHh
Q psy15562 198 MFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLH 260 (318)
Q Consensus 198 ~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~ 260 (318)
.+.+-.+++..|..+|..|++|=.+|..=+.+|..|||.++..|+.|...+..+...+.+-.+
T Consensus 4 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (77)
T 1jth_B 4 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778889999999999999999999999999999999999999999999999999999877
No 11
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=96.70 E-value=0.0026 Score=48.99 Aligned_cols=56 Identities=21% Similarity=0.396 Sum_probs=41.7
Q ss_pred hHHHHhhhhhhhhhhhhhhhhcccc-cccccccccccccccCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15562 140 NQQSAMFDQQDSQLDMLSETIGTLT-VQVRRQTKYSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIG 214 (318)
Q Consensus 140 ~qq~ll~~~qd~ql~~v~~sig~~k-~s~~~~~~y~~l~~~~~~~n~~fi~~elq~Qq~~m~eQDe~Ld~Ls~sV~ 214 (318)
.+|..++.+||++|+.++.+|+.+| ++ .-|+.|+..|..+|++.+..+|.....+.
T Consensus 8 q~Q~~~~~eQD~~Ld~L~~~v~~LK~~a-------------------~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~ 64 (82)
T 2nps_D 8 TGGNNMGRMQDEQLELVSGSIGVLKNMS-------------------QRIGGELEEQAVMLEDFSHELESTQSRLD 64 (82)
T ss_dssp ----------CCTHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999888 65 56999999999999999999999887776
No 12
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.23 E-value=0.0064 Score=44.56 Aligned_cols=53 Identities=23% Similarity=0.368 Sum_probs=42.0
Q ss_pred Hhhhhhhhhhhhhhhhhcccc-cccccccccccccccCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15562 144 AMFDQQDSQLDMLSETIGTLT-VQVRRQTKYSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGT 215 (318)
Q Consensus 144 ll~~~qd~ql~~v~~sig~~k-~s~~~~~~y~~l~~~~~~~n~~fi~~elq~Qq~~m~eQDe~Ld~Ls~sV~~ 215 (318)
.++.+||++|+.++++++.+| ++ .-|+.|++.|..++++.+..+|.....+.+
T Consensus 2 ~~~~eqD~~Ld~L~~~v~~lk~~a-------------------~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~ 55 (65)
T 1gl2_D 2 SHMQEQDAGLDALSSIISRQKQMG-------------------QEIGNELDEQNEIIDDLANLVENTDEKLRT 55 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999888 65 569999999999999999999998887764
No 13
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=96.02 E-value=0.046 Score=40.68 Aligned_cols=60 Identities=10% Similarity=0.296 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhh
Q psy15562 202 QDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHI 261 (318)
Q Consensus 202 QDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~ 261 (318)
-.+.+..|..+|..|++|=.+|..=+.+|..|||.++..|+.|...+..+...|.+-.+.
T Consensus 4 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~ 63 (71)
T 2nps_B 4 RETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYY 63 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788999999999999999999999999999999999999999999999999887663
No 14
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=95.96 E-value=0.072 Score=39.46 Aligned_cols=63 Identities=13% Similarity=0.193 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHh
Q psy15562 198 MFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLH 260 (318)
Q Consensus 198 ~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~ 260 (318)
.+.+-.+.+..|..+|..|++|=.+|..=+.+|..|||.++..|+.|...+..+.+.+.+-.+
T Consensus 4 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 4 EVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778899999999999999999999999999999999999999999999999999987654
No 15
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=95.84 E-value=0.043 Score=40.23 Aligned_cols=60 Identities=15% Similarity=0.369 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHH
Q psy15562 198 MFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAK 257 (318)
Q Consensus 198 ~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~ 257 (318)
++.+-.+.+..|..+|..|++|=.+|..=+.+|..|||.++..|+.|...+..+.+.|.+
T Consensus 3 ~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~k 62 (65)
T 1gl2_B 3 HMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSR 62 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788999999999999999999999999999999999999999999999998875
No 16
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=95.59 E-value=0.13 Score=39.48 Aligned_cols=66 Identities=14% Similarity=0.240 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhh
Q psy15562 196 SAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHI 261 (318)
Q Consensus 196 q~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~ 261 (318)
...+.+-.+.+..|..+|..|++|=.+|..=+.+|..|||.++..|+.+...+..+.+.+.+-.+.
T Consensus 13 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~ 78 (83)
T 1sfc_B 13 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888999999999999999999999999999999999999999999999999999887653
No 17
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=95.55 E-value=0.1 Score=38.44 Aligned_cols=61 Identities=15% Similarity=0.255 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHH
Q psy15562 198 MFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKV 258 (318)
Q Consensus 198 ~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~v 258 (318)
.+.+-.+.+..|..+|..|+++=.+|..=+.+|..|||.++..|+.|...+..+.+.+.+-
T Consensus 6 ~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 66 (68)
T 1n7s_B 6 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788899999999999999999999999999999999999999999999999988764
No 18
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=95.13 E-value=0.03 Score=43.47 Aligned_cols=56 Identities=23% Similarity=0.262 Sum_probs=47.8
Q ss_pred HHHhhhhhhhhhhhhhhhhcccc-cccccccccccccccCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15562 142 QSAMFDQQDSQLDMLSETIGTLT-VQVRRQTKYSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGTL 216 (318)
Q Consensus 142 q~ll~~~qd~ql~~v~~sig~~k-~s~~~~~~y~~l~~~~~~~n~~fi~~elq~Qq~~m~eQDe~Ld~Ls~sV~~L 216 (318)
+..+..+||..|+.++..++.+| ++ .-++.|++.|..+|++.+...|.+...|...
T Consensus 20 ~d~~e~eqD~~Ld~Ls~~v~rLk~la-------------------~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~ 76 (87)
T 1sfc_D 20 NDARENEMDENLEQVSGIIGNLRHMA-------------------LDMGNEIDTQNRQIDRIMEKADSNKTRIDEA 76 (87)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45567889999999999999887 55 5689999999999999999999988877643
No 19
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=94.19 E-value=0.1 Score=38.18 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=44.8
Q ss_pred hhhhhhhhhhhhhhhcccc-cccccccccccccccCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15562 146 FDQQDSQLDMLSETIGTLT-VQVRRQTKYSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGTL 216 (318)
Q Consensus 146 ~~~qd~ql~~v~~sig~~k-~s~~~~~~y~~l~~~~~~~n~~fi~~elq~Qq~~m~eQDe~Ld~Ls~sV~~L 216 (318)
-.+||.+|+.++++++.+| ++ .-++.|+..|..++++.+..+|.....|...
T Consensus 5 e~eqD~~Ld~L~~~v~~lk~la-------------------~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~ 57 (66)
T 1n7s_D 5 ENEMDENLEQVSGIIGNLRHMA-------------------LDMGNEIDTQNRQIDRIMEKADSNKTRIDEA 57 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3578999999999999888 65 5689999999999999999999988887743
No 20
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=93.08 E-value=1.4 Score=33.52 Aligned_cols=67 Identities=18% Similarity=0.148 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHH
Q psy15562 193 NQQSAMFDQQDSQLDMLSETIG---TLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVL 259 (318)
Q Consensus 193 q~Qq~~m~eQDe~Ld~Ls~sV~---~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl 259 (318)
..++.....+++.++.+..++. .-.++|..+-.+|..|.+-|+..+..+|....-|+.+.|.|..+-
T Consensus 9 ~l~~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~ 78 (79)
T 1n7s_C 9 EMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhc
Confidence 5567777888888888888877 456689999999999999999999999999999999998887653
No 21
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=88.80 E-value=0.52 Score=36.51 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=44.1
Q ss_pred hhhhhhhhhhhhhhhhcccc-cccccccccccccccCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15562 145 MFDQQDSQLDMLSETIGTLT-VQVRRQTKYSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGT 215 (318)
Q Consensus 145 l~~~qd~ql~~v~~sig~~k-~s~~~~~~y~~l~~~~~~~n~~fi~~elq~Qq~~m~eQDe~Ld~Ls~sV~~ 215 (318)
+-.+||..|+.++..++.+| ++ .-++.|++.|..+|+..+...|.+...|..
T Consensus 24 ~e~eqD~~Ld~ls~~l~rLk~mA-------------------~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~ 76 (87)
T 1l4a_D 24 REDDMENNMKEVSSMIGNLRNMA-------------------IDMGNEIGSQNRQVDRIQQKAESNESRIDE 76 (87)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHTHHHHTH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999887 55 558899999999999999999988887763
No 22
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=85.95 E-value=1.8 Score=33.42 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHH
Q psy15562 193 NQQSAMFDQQDSQLDMLSETIGTLK---TVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVA 256 (318)
Q Consensus 193 q~Qq~~m~eQDe~Ld~Ls~sV~~Lk---~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~ 256 (318)
..++.+..-+++.++.....++-.. ..|..--.+|..|.+-|+.++..+|....-|+.+-+.|.
T Consensus 13 ~l~~~~~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~ 79 (83)
T 1l4a_C 13 EIQQQCNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLE 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566777788899999888887544 477788889999999999999999999998888877665
No 23
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=84.83 E-value=7.4 Score=28.88 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHH
Q psy15562 198 MFDQQDSQLDMLSETIGTLKT---VSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKV 258 (318)
Q Consensus 198 ~m~eQDe~Ld~Ls~sV~~Lk~---~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~v 258 (318)
+..-+++.++.....+.-..+ .|..-=.+|..|.+-|+.++..+|....-++.+-+++..+
T Consensus 3 ir~~~~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~L 66 (70)
T 3b5n_C 3 IKFTKQSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456677777777765444 6777778999999999999999999999999999999865
No 24
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=81.93 E-value=5.4 Score=27.92 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHH
Q psy15562 213 IGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVA 256 (318)
Q Consensus 213 V~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~ 256 (318)
+....++|..+-.+|..|.+-|+..+..+|....-|+.+.|.|.
T Consensus 9 ~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 9 AIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 33456778888899999999999999999999999999988775
No 25
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=80.86 E-value=2.7 Score=30.69 Aligned_cols=49 Identities=14% Similarity=0.201 Sum_probs=39.8
Q ss_pred hhhhhhhhhhhhhhcccc-cccccccccccccccCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15562 147 DQQDSQLDMLSETIGTLT-VQVRRQTKYSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIG 214 (318)
Q Consensus 147 ~~qd~ql~~v~~sig~~k-~s~~~~~~y~~l~~~~~~~n~~fi~~elq~Qq~~m~eQDe~Ld~Ls~sV~ 214 (318)
+++|+.|+.+++.+|.+| |. .-++.+++.|..+++.-++..|.+...|.
T Consensus 6 ~e~D~nLd~l~~~~~rlk~ma-------------------~~mg~Eid~QN~~ldrI~~k~d~~d~ri~ 55 (64)
T 3b5n_D 6 LEIDRNLDQIQQVSNRLKKMA-------------------LTTGKELDSQQKRLNNIEESTDDLDINLH 55 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHH-------------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999998887 55 45788889998888888888888777765
No 26
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=79.76 E-value=1.1 Score=41.03 Aligned_cols=66 Identities=14% Similarity=0.242 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHh
Q psy15562 195 QSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLH 260 (318)
Q Consensus 195 Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~ 260 (318)
.-..+.+-.+++..|..+|..|+++=.+|..=+.+|..|||.++..|+.|...+..+...|.+-.+
T Consensus 191 ~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~ 256 (267)
T 1dn1_B 191 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 256 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777888999999999999999999999999999999999999999999999999999887655
No 27
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=75.64 E-value=9.5 Score=27.61 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHH
Q psy15562 204 SQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKV 258 (318)
Q Consensus 204 e~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~v 258 (318)
+.|..-...+..-.++|..|-.+|..|.+-|....+.++.++.-|..+.+-|+.+
T Consensus 9 ~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m 63 (65)
T 1gl2_C 9 QSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSM 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhh
Confidence 4445555556677889999999999999999999999999999999988877654
No 28
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=74.65 E-value=25 Score=26.48 Aligned_cols=65 Identities=8% Similarity=0.152 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhh
Q psy15562 197 AMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHI 261 (318)
Q Consensus 197 ~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~ 261 (318)
..++.-.+.|..-...+..--++|..|-.||..|.+-|....+.++.+++-|..+.+-|..+.+.
T Consensus 12 ~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr 76 (81)
T 2nps_C 12 ERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRR 76 (81)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence 44456666677777777788889999999999999999999999999999999999888877664
No 29
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=60.43 E-value=1.6 Score=39.99 Aligned_cols=63 Identities=13% Similarity=0.248 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHh
Q psy15562 198 MFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLH 260 (318)
Q Consensus 198 ~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~ 260 (318)
.+.+=.+.+..|..+|..|++|=.+|..=+.+|..|||.++..|+.|...+..+.+.|.+-.+
T Consensus 211 ~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~ 273 (279)
T 2xhe_B 211 EIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARH 273 (279)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667899999999999999999999999999999999999999999999999998877544
No 30
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=60.29 E-value=4.7 Score=35.37 Aligned_cols=67 Identities=15% Similarity=0.252 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHh
Q psy15562 194 QQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLH 260 (318)
Q Consensus 194 ~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~ 260 (318)
.....+.+-.+.|..|..+|..+.++-..|..-+++|..++++++..|+.+......+...+.+-.+
T Consensus 202 ~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~ 268 (279)
T 3c98_B 202 QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 268 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888999999999999999999999999999999999999999999888877777766544
No 31
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=36.03 E-value=1.3e+02 Score=22.22 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhh
Q psy15562 206 LDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHI 261 (318)
Q Consensus 206 Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~ 261 (318)
++.+...+.....-+.....||..-+.=+--|.+++|++..+|..++.++..--+.
T Consensus 22 ~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~ 77 (81)
T 1ic2_A 22 AEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKK 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555556777889999999999999999999999999999999865443
No 32
>1r48_A Proline/betaine transporter; osmosensor, cytoplasmic, coiled-coil, antiparallel, two- stranded homodimer, transport protein; NMR {Synthetic} SCOP: h.4.15.1
Probab=35.54 E-value=25 Score=22.42 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=15.2
Q ss_pred hHHhcHHHHHHHHHHHHh
Q psy15562 46 SIEWDLEDLEDTINILYN 63 (318)
Q Consensus 46 siE~DLeDL~esI~ivE~ 63 (318)
.|||+++||.+.|..++.
T Consensus 5 nie~~iedi~~ei~~l~~ 22 (33)
T 1r48_A 5 NIEQKIDDIDHEIADLQA 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHhhhhHHHHHHHHHH
Confidence 479999999999988863
No 33
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=34.68 E-value=2.1e+02 Score=24.21 Aligned_cols=61 Identities=7% Similarity=0.085 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhcC
Q psy15562 203 DSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISN 263 (318)
Q Consensus 203 De~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s~ 263 (318)
...+..|..-+..+..--.+...||.+.+..++.|.+.+...+-.++.+..|+.++-+-+.
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~ 127 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHS 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477778888888888888889999999999999999999999999999999988876553
No 34
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.60 E-value=3.6e+02 Score=25.63 Aligned_cols=74 Identities=8% Similarity=0.093 Sum_probs=50.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHH
Q psy15562 186 SWVSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVL 259 (318)
Q Consensus 186 ~fi~~elq~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl 259 (318)
.++.....++..|..+.....+..-.-....+.--..+.+|-+.+...|++++..+..+..++..+..+-..+.
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (487)
T 3oja_A 410 QLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLA 483 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHH
Confidence 33444555555666666666666555555556566666666677778899999999999999888887765443
No 35
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=29.20 E-value=1.5e+02 Score=20.69 Aligned_cols=18 Identities=11% Similarity=0.071 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15562 201 QQDSQLDMLSETIGTLKT 218 (318)
Q Consensus 201 eQDe~Ld~Ls~sV~~Lk~ 218 (318)
+...+++.|+..|..|..
T Consensus 8 ~Lss~V~~L~~kVdqLss 25 (52)
T 1jcd_A 8 QASSDAQTANAKADQASN 25 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 36
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=27.64 E-value=3.2e+02 Score=24.13 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHH
Q psy15562 203 DSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAK 257 (318)
Q Consensus 203 De~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~ 257 (318)
-..|+.|...+..++.--..+..++++-..-+..++.+++.+..++....+++..
T Consensus 31 p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4666666777777777777777777777777777777777777777777777754
No 37
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=27.52 E-value=1.3e+02 Score=22.70 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=34.3
Q ss_pred ccchhhHHHHHHHHHHHHHhHHhcHHHHHHHHH-----HHHhCCcee
Q psy15562 27 NILRDELEWTTTELRNSLRSIEWDLEDLEDTIN-----ILYNNFDFI 68 (318)
Q Consensus 27 ~~s~~El~~~~~EL~~~l~siE~DLeDL~esI~-----ivE~nP~f~ 68 (318)
..|.+|+-..--.++..|..-...+.||++-|+ |.|.+|.-.
T Consensus 13 ~ltreELi~l~lk~~~~l~~k~~~v~eLEdYID~LLvRVME~~P~iL 59 (75)
T 3tso_C 13 SLTYEEVLQELVKHKELLRRKDTHIRELEDYIDNLLVRVMEETPSIL 59 (75)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHh
Confidence 357899999888888888888888888888765 789999744
No 38
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=26.65 E-value=2.2e+02 Score=21.98 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHh----hhhcccCccchhhHHHHHHHHHHHHHhHHhcHHHHHHHHHHHH
Q psy15562 2 VSKAINKTRSLYKRWLEL----KEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINILY 62 (318)
Q Consensus 2 V~~sl~~~~~ly~Rw~~L----~~~~~~~~~s~~El~~~~~EL~~~l~siE~DLeDL~esI~ivE 62 (318)
|+..|..++....+...+ +..+.+....+.++.....++......|-.-|+.|+..+.-.+
T Consensus 17 I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~ 81 (127)
T 1ez3_A 17 IRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEE 81 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555555544444433 2223211223456777777777777777777777776665443
No 39
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=26.35 E-value=3.3e+02 Score=25.15 Aligned_cols=10 Identities=10% Similarity=-0.017 Sum_probs=5.1
Q ss_pred hhhHHHHHHH
Q psy15562 30 RDELEWTTTE 39 (318)
Q Consensus 30 ~~El~~~~~E 39 (318)
.+|+.|...+
T Consensus 82 ~~e~~~l~~~ 91 (363)
T 2iub_A 82 TDVVQRVGEF 91 (363)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4556555444
No 40
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=24.06 E-value=69 Score=24.14 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=19.0
Q ss_pred HHHHHhHHhcHHHHHHHHHHHH---hCCceee
Q psy15562 41 RNSLRSIEWDLEDLEDTINILY---NNFDFIE 69 (318)
Q Consensus 41 ~~~l~siE~DLeDL~esI~ivE---~nP~f~~ 69 (318)
...|..|+..++.|+.-|..++ .+|.||.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~ 52 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFS 52 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 3345566666666666666554 7899884
No 41
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=22.94 E-value=7.5e+02 Score=30.55 Aligned_cols=91 Identities=15% Similarity=0.222 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhcCCcccccccchh
Q psy15562 195 QSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNGEMLDEMGNEM 274 (318)
Q Consensus 195 Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s~~r~c~~~~~~~ 274 (318)
.+.-+.+-.+.|..|...|..|+ .+.++...=-..|..+++.++.||.+|.+=+..+-.. ..||-.-..
T Consensus 2026 ~~~~L~~~~~~L~~le~~l~~L~-------~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~E-k~RW~~~~~--- 2094 (3245)
T 3vkg_A 2026 LKLKQDEIVATITALEKSIATYK-------EEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSE-RGRWEQQSE--- 2094 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cccHHHHHH---
Confidence 33344444444444444444443 4455555555678888999999999998877766432 234442222
Q ss_pred hhcccchhhHHHHHHHHHHHHHhhhhh
Q psy15562 275 ECTESKLDATMKKVAKVLHISNVFCSY 301 (318)
Q Consensus 275 ~~~~~k~~~~~~~~~~~~~~~~~~~~~ 301 (318)
.++-.+..+.+=..+..-|++|
T Consensus 2095 -----~l~~~~~~L~GD~LLaaafisY 2116 (3245)
T 3vkg_A 2095 -----NFNTQMSTVVGDVVLASAFLAY 2116 (3245)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHhccHHHHHHHHHHHH
Confidence 2233334444444555555555
No 42
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=22.85 E-value=2.4e+02 Score=20.96 Aligned_cols=47 Identities=11% Similarity=0.083 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhH
Q psy15562 204 SQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDA 250 (318)
Q Consensus 204 e~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~ 250 (318)
+.|+.|...+.-+-..-...++.|-.|...||.|...+.....||..
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555554444444555555666666666666665555555544
No 43
>1qoy_A Hemolysin E; toxin, membrane pore former, cytolysin, pores; 2.0A {Escherichia coli} SCOP: h.4.4.1 PDB: 2wcd_A
Probab=22.68 E-value=1.9e+02 Score=27.35 Aligned_cols=78 Identities=12% Similarity=0.056 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhh----hHHHHHHHHHHhhcCCcccccccchhhhcc
Q psy15562 203 DSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKL----DATMKKVAKVLHISNGEMLDEMGNEMECTE 278 (318)
Q Consensus 203 De~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL----~~~~kkl~~vl~~s~~r~c~~~~~~~~~~~ 278 (318)
|+.++.+-..+..|..+-...+.|++.+.. +.+|...+|..+.-| +.|.++|.++-..+++-.+.|. +|+-
T Consensus 22 ~~~~e~vk~al~Sls~iv~kY~~elD~kvk-f~~LQ~aId~ID~~MlgY~G~AK~~LD~lRslns~A~ltY~----~cv~ 96 (318)
T 1qoy_A 22 DKTVEVVKNAIETADGALDLYNKYLDQVIP-WQTFDETIKELSRFKQEYSQAASVLVGDIKTLLMDSQDKYF----EATQ 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHSC-HHHHHHHHHHTTTTGGGSCHHHHHHHHHHHHHHHHHHHHHH----HHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHhhhcCCcHHHHhhHHHHHhhHHHHHHHH----HHHH
Confidence 466888888999999999999999998764 344444444443333 5677888888776654333221 2334
Q ss_pred cchhhHH
Q psy15562 279 SKLDATM 285 (318)
Q Consensus 279 ~k~~~~~ 285 (318)
...-||.
T Consensus 97 ~VfEWCv 103 (318)
T 1qoy_A 97 TVYEWCG 103 (318)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4455664
No 44
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=22.00 E-value=1.5e+02 Score=26.67 Aligned_cols=57 Identities=16% Similarity=0.312 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhhhhcccCccchhhHHHHHHHHH---HHHHhHHhcHHHHHHHHHHHHhC
Q psy15562 5 AINKTRSLYKRWLELKEETYASNILRDELEWTTTELR---NSLRSIEWDLEDLEDTINILYNN 64 (318)
Q Consensus 5 sl~~~~~ly~Rw~~L~~~~~~~~~s~~El~~~~~EL~---~~l~siE~DLeDL~esI~ivE~n 64 (318)
.+..++..|.|.+.|.... ..+..++..+..++. ..+..++.+|+.+...+..++.+
T Consensus 91 ~~~~a~~~~~r~~~L~~~~---~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~ 150 (341)
T 3fpp_A 91 ELKLARVTYSRQQRLAQTQ---AVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTN 150 (341)
T ss_dssp HHHHHTHHHHHHHHHHHTS---SSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHcC---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556799999999877 356788888777765 45566666666666655555444
No 45
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=21.84 E-value=2.5e+02 Score=20.95 Aligned_cols=33 Identities=9% Similarity=0.152 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhH
Q psy15562 207 DMLSETIGTLKTVSRNIGSELDEQALMLDEMGN 239 (318)
Q Consensus 207 d~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~ 239 (318)
+.|...+++++..+..|..+|+.=...++.|..
T Consensus 14 ~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~ 46 (103)
T 4i0x_B 14 DHIEQVTSRARGFKEFVTENLDQLESRAQKLVQ 46 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444444454444444444444433
No 46
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Probab=21.60 E-value=88 Score=27.10 Aligned_cols=64 Identities=17% Similarity=0.286 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhh
Q psy15562 197 AMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHI 261 (318)
Q Consensus 197 ~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~ 261 (318)
.++.=-|++|+.++-+.+.-|.+...| .+|.++...|-.++.++-.-++.|+.+...+..++.+
T Consensus 33 ~~~~LTdedL~~~GVT~GARrKIL~aI-q~Lrer~~~l~~le~~~~~g~~~l~~~l~el~~i~~t 96 (173)
T 1oxj_A 33 EMLLITEDFLQSVGVTKGASHKLALCI-DKLKERANILNRVEQELLSGQMELSTAVEELTNIVLT 96 (173)
T ss_dssp HHTTCCHHHHHHTTCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHTTTTS
T ss_pred HHHhcCHHHHHHCCCchHHHHHHHHHH-HHHHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHhC
Confidence 456666788999988889999999988 6889999999999999997667999999999987664
No 47
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=21.32 E-value=1.7e+02 Score=21.31 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=24.3
Q ss_pred ccchhhHHHHHHHHHHHHHhHHhcHHHHHHHHHHHHhCCceee
Q psy15562 27 NILRDELEWTTTELRNSLRSIEWDLEDLEDTINILYNNFDFIE 69 (318)
Q Consensus 27 ~~s~~El~~~~~EL~~~l~siE~DLeDL~esI~ivE~nP~f~~ 69 (318)
..|.+|+..+-.+-+...+.++.=++.|- ++|+|.+|.-..
T Consensus 22 ~~s~deL~~~l~eqee~n~~Le~YID~LL--~~ImE~~PsiLe 62 (64)
T 2hv8_D 22 SVSRDELMEAIQKQEEINFRLQDYIDRII--VAIMETNPSILE 62 (64)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHTTCGGGGB
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcCCchhh
Confidence 34566666665555554444444444444 569999997543
No 48
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=21.00 E-value=1.9e+02 Score=26.23 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhhhhcccCccchhhHHHHHHHHH---HHHHhHHhcHHHHHHHHHHHHhCC
Q psy15562 6 INKTRSLYKRWLELKEETYASNILRDELEWTTTELR---NSLRSIEWDLEDLEDTINILYNNF 65 (318)
Q Consensus 6 l~~~~~ly~Rw~~L~~~~~~~~~s~~El~~~~~EL~---~~l~siE~DLeDL~esI~ivE~nP 65 (318)
+..++..|.|++.|..... .+..++..+..++. ..+..++.+|+.++..+..++.+-
T Consensus 93 ~~~a~~~~~r~~~L~~~~~---~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l 152 (369)
T 4dk0_A 93 YDVALSNYQRLSKLYGQKA---TSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNL 152 (369)
T ss_dssp HHHTTTTHHHHHHGGGSSC---SCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCC---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444456999999998774 56677777666655 456666667777776676666553
No 49
>4djg_A Plectin-related protein; coiled-coil, four helix bundle, dimerization, cytosolic, Pro binding; 1.90A {Arabidopsis thaliana}
Probab=20.50 E-value=82 Score=22.01 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhHHhc-----HHHHHHHHHHHHh
Q psy15562 34 EWTTTELRNSLRSIEWD-----LEDLEDTINILYN 63 (318)
Q Consensus 34 ~~~~~EL~~~l~siE~D-----LeDL~esI~ivE~ 63 (318)
.-..+-|+..|+++.-- =+|++++|++||.
T Consensus 7 ~vLlKkLr~~Le~L~GRvaGrnkddveeaismVea 41 (52)
T 4djg_A 7 HVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEA 41 (52)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHHH
Confidence 34567888888888754 4899999999985
No 50
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=20.49 E-value=6.2e+02 Score=24.93 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=23.1
Q ss_pred hhhhhhHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15562 185 RSWVSNSINQQ-SAM---FDQQDSQLDMLSETIGTLKTVSRNIGSEL 227 (318)
Q Consensus 185 ~~fi~~elq~Q-q~~---m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL 227 (318)
...+.+.|..| ..+ +++....|+.|+.+....++.-..|...+
T Consensus 84 tC~l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~sl 130 (464)
T 1m1j_B 84 GCELQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKL 130 (464)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 34455555433 323 66777777777766555444444444443
Done!