RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15562
         (318 letters)



>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare
           complex, VTI1A, VAMP4, transport protein; 2.50A {Homo
           sapiens}
          Length = 82

 Score = 81.8 bits (202), Expect = 5e-20
 Identities = 34/73 (46%), Positives = 54/73 (73%)

Query: 191 SINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDA 250
           S+   + M   QD QL+++S +IG LK +S+ IG EL+EQA+ML++  +E+E T+S+LD 
Sbjct: 6   SMTGGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDN 65

Query: 251 TMKKVAKVLHISN 263
            MKK+AKV H+++
Sbjct: 66  VMKKLAKVSHMTS 78


>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure
          initiative, nysgrc, P biology, NEW YORK structural
          genomics research consortium; HET: MSE; 1.40A {Homo
          sapiens} PDB: 1lvf_A
          Length = 130

 Score = 65.4 bits (159), Expect = 2e-13
 Identities = 40/64 (62%), Positives = 48/64 (75%), Gaps = 2/64 (3%)

Query: 1  EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
          EV KA+N  R LY+RW EL +E+ A    R+EL+WTT ELRN LRSIEWDLEDLE+TI I
Sbjct: 35 EVQKAVNTARGLYQRWCELLQESAAVG--REELDWTTNELRNGLRSIEWDLEDLEETIGI 92

Query: 61 LYNN 64
          +  N
Sbjct: 93 VEAN 96


>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane
           protein, membrane fusion protein complex, coiled coil,
           transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
          Length = 65

 Score = 60.6 bits (147), Expect = 2e-12
 Identities = 23/59 (38%), Positives = 36/59 (61%)

Query: 200 DQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKV 258
            +QD+ LD LS  I   K + + IG+ELDEQ  ++D++ N +E T+ KL    ++V  V
Sbjct: 5   QEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV 63


>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion
           protein complex, transport protein; 2.40A {Rattus
           norvegicus} SCOP: h.1.15.1
          Length = 87

 Score = 54.9 bits (132), Expect = 4e-10
 Identities = 15/63 (23%), Positives = 37/63 (58%)

Query: 197 AMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVA 256
           A  ++ D  L+ +S  IG L+ ++ ++G+E+D Q   +D +  + +  ++++D   ++  
Sbjct: 22  ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 81

Query: 257 KVL 259
           K+L
Sbjct: 82  KML 84


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 59.5 bits (143), Expect = 6e-10
 Identities = 53/341 (15%), Positives = 99/341 (29%), Gaps = 88/341 (25%)

Query: 33  LEWTTTELRNSLRSIEWDLEDLEDTINILYNNFDFIEHLCMKDTMNYSRE--KDRGGDHM 90
           +++ T E +   + I   L   ED          F+++   KD  +  +        DH+
Sbjct: 7   MDFETGEHQYQYKDI---LSVFED---------AFVDNFDCKDVQDMPKSILSKEEIDHI 54

Query: 91  SSKPLLSDDFHSPSPV----KISAPFGSSRQTKYSKLNNQMDSPNRSWLSNSI----NQQ 142
                      S   V    ++     S ++    K   ++   N  +L + I     Q 
Sbjct: 55  ---------IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105

Query: 143 SAMFDQQDSQLDMLSETIGTLT-VQVRRQTKYSKLNN--QMDSPNR------------SW 187
           S M      Q D L           V R   Y KL        P +            +W
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165

Query: 188 ----VSNSINQQSAMFDQ-----------QDSQLDMLSETIGTLKTVSRNIGSELDEQAL 232
               V  S   Q  M  +            ++ L+M       L+ +   I      ++ 
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM-------LQKLLYQIDPNWTSRSD 218

Query: 233 MLDEMGNEMECTESKLDATM--KKVAKVL----HISNGEMLDEMGNEMEC-----TESK- 280
               +   +   +++L   +  K     L    ++ N +  +     + C     T  K 
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--NLSCKILLTTRFKQ 276

Query: 281 ----LDATMKKVAKVLHISNVFCSYE-MNLFCSSEMNCKKK 316
               L A       + H S      E  +L     ++C+ +
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQ 316



 Score = 52.9 bits (126), Expect = 7e-08
 Identities = 53/345 (15%), Positives = 111/345 (32%), Gaps = 64/345 (18%)

Query: 1   EVSKAINKTRSLYKRWLELKEETYA---SNILRDELEWTTTELRNSLRSIEWDLEDLEDT 57
               A++ T  L+   L  +EE        +LR   ++  + ++   R          + 
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 58  INILYNNFDFIEHLCMKDTMNYSREKDRGGDHMSSKPLLSDDFHSPSP-VKISAPFGSSR 116
            + LYN+             N SR +     ++  +  L +    P+  V I    GS +
Sbjct: 116 RDRLYNDNQVF------AKYNVSRLQ----PYLKLRQALLEL--RPAKNVLIDGVLGSGK 163

Query: 117 QT------KYSKLNNQMDSPNRSWLS----NS----INQQSAMFDQQDSQLDMLSETIGT 162
                      K+  +MD     WL+    NS    +     +  Q D      S+   +
Sbjct: 164 TWVALDVCLSYKVQCKMDF-KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD--HS 220

Query: 163 LTVQVRRQTKYSKLNNQMDSP--NRS-------WVSNSINQQSAMFDQQ--------DSQ 205
             +++R  +  ++L   + S               + + N     F+            Q
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN----AFNLSCKILLTTRFKQ 276

Query: 206 L-DMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNG 264
           + D LS    T  ++  +  +   ++   L  +   ++C    L   +        +S  
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSL--LLKYLDCRPQDLPREVLTTNP-RRLS-- 331

Query: 265 EMLDEMGNEMECT-ESKLDATMKKVAKVLHIS-NVFCSYEM-NLF 306
            ++ E   +   T ++       K+  ++  S NV    E   +F
Sbjct: 332 -IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375



 Score = 29.8 bits (66), Expect = 1.6
 Identities = 33/260 (12%), Positives = 75/260 (28%), Gaps = 84/260 (32%)

Query: 16  WLELKEETYASNILRDELEWTTTELRN-SLRSIEWDLEDLEDTINILYNNFDFIEHLCMK 74
           W ++ +          ++     +L   SL  +E   ++   +I  +Y   +    L  +
Sbjct: 396 WFDVIKS---------DVMVVVNKLHKYSL--VEKQPKESTISIPSIY--LELKVKLENE 442

Query: 75  DTMN------YSREKDRGGDHMSSKPLLSDD-------FHSPSPVKISAPFGSSRQTKYS 121
             ++      Y+  K    D +    L  D         H            +    +  
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYL--DQYFYSHIGHH----------LKNIEHPERM 490

Query: 122 KLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETIGTLTVQVRRQTKYSKLNNQMD 181
            L   +   +  +L   I   S  ++   S L+ L         Q++    Y        
Sbjct: 491 TLFRMV-FLDFRFLEQKIRHDSTAWNASGSILNTLQ--------QLKFYKPY-------- 533

Query: 182 SPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNI--GSELD--EQALMLDEM 237
                     I      +++      +++  +  L  +  N+      D    ALM ++ 
Sbjct: 534 ----------ICDNDPKYER------LVNAILDFLPKIEENLICSKYTDLLRIALMAED- 576

Query: 238 GNEMECTESKLDATMKKVAK 257
                  E+  +   K+V +
Sbjct: 577 -------EAIFEEAHKQVQR 589



 Score = 27.9 bits (61), Expect = 6.3
 Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 27/86 (31%)

Query: 7   NKTRSLYKRWLELKE-------------ETYASNILRDELEWTTTELRNS---------- 43
             T S+   +LELK              + Y  NI +                       
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHY--NIPKTFDSDDLIPPYLDQYFYSHIGHH 480

Query: 44  LRSIEWDLEDLEDTINILYNNFDFIE 69
           L++IE    +      +++ +F F+E
Sbjct: 481 LKNIE--HPERMTLFRMVFLDFRFLE 504


>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle,
           transport protein; 1.45A {Rattus norvegicus} SCOP:
           h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D
           3ipd_D 1urq_D 1xtg_B
          Length = 66

 Score = 52.8 bits (127), Expect = 1e-09
 Identities = 15/63 (23%), Positives = 37/63 (58%)

Query: 197 AMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVA 256
           A  ++ D  L+ +S  IG L+ ++ ++G+E+D Q   +D +  + +  ++++D   ++  
Sbjct: 3   ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 62

Query: 257 KVL 259
           K+L
Sbjct: 63  KML 65


>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion,
           neurotransmission, endocytosis/exocytosis complex; 2.95A
           {Loligo pealei} SCOP: h.1.15.1
          Length = 87

 Score = 43.1 bits (101), Expect = 6e-06
 Identities = 18/63 (28%), Positives = 35/63 (55%)

Query: 197 AMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVA 256
           A  D  ++ +  +S  IG L+ ++ ++G+E+  Q   +D +  + E  ES++D   KK  
Sbjct: 23  AREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKAT 82

Query: 257 KVL 259
           K+L
Sbjct: 83  KLL 85


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 38.5 bits (89), Expect = 0.003
 Identities = 39/253 (15%), Positives = 79/253 (31%), Gaps = 90/253 (35%)

Query: 26  SNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI-LYNNFD-FI--------EHLCM-- 73
           SN+ +++++    +  + L +           + I L N     +          L +  
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPA--------GKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393

Query: 74  -----KDTMNYSREK--DRGGDHMSSKPLLSDDFHSPSPVKISAPFGSSRQTKY-----S 121
                   ++ SR    +R       K   S+ F     + +++PF S            
Sbjct: 394 RKAKAPSGLDQSRIPFSER-------KLKFSNRF-----LPVASPFHSH----LLVPASD 437

Query: 122 KLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDM--LSETI-GTLTVQVRRQTKYSKLNN 178
            +N  +   N S+ +  I  Q  ++D  D   D+  LS +I   +   + R         
Sbjct: 438 LINKDLVKNNVSFNAKDI--QIPVYDTFDGS-DLRVLSGSISERIVDCIIRL-------- 486

Query: 179 QMDSPNRSWVSNSINQQSAMFDQQDSQLDM---LSETIGTLKTVSRN---------IGSE 226
            +      W + +  + + +       LD     +  +G L    RN         +   
Sbjct: 487 PVK-----WETTTQFKATHI-------LDFGPGGASGLGVL--THRNKDGTGVRVIVAGT 532

Query: 227 LDEQALMLDEMGN 239
           LD      D+ G 
Sbjct: 533 LDIN--PDDDYGF 543



 Score = 29.6 bits (66), Expect = 1.5
 Identities = 32/230 (13%), Positives = 65/230 (28%), Gaps = 105/230 (45%)

Query: 144  AMFDQQDSQLDMLSETIGTLTVQVRRQTKYSKLNNQMDSPNRSWVSNSINQQSAMFDQQD 203
             ++++ D+      +T G           +S L+  +++P    +          F  + 
Sbjct: 1644 DVWNRADNHF---KDTYG-----------FSILDIVINNPVNLTI---------HFGGEK 1680

Query: 204  SQ------LDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDAT------ 251
             +        M+ ETI   K  +  I  E++E +             +  L AT      
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT-----FRSEKGLLSATQFTQPA 1735

Query: 252  -----------MKK-----------------------VAKVLHISN--------GEML-- 267
                       +K                        +A V+ I +        G  +  
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQV 1795

Query: 268  ----DEMGNE---M----------ECTESKLDATMKKVAK----VLHISN 296
                DE+G     M            ++  L   +++V K    ++ I N
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN 1845


>3b5n_D Protein transport protein SEC9; snare complex, syntaxin,
           synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1,
           coiled coil; 1.60A {Saccharomyces cerevisiae}
          Length = 64

 Score = 33.6 bits (77), Expect = 0.008
 Identities = 14/61 (22%), Positives = 26/61 (42%)

Query: 198 MFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAK 257
           M  + D  LD + +    LK ++   G ELD Q   L+ +    +  +  L     ++A 
Sbjct: 4   MELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63

Query: 258 V 258
           +
Sbjct: 64  I 64


>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A
           {Homo sapiens}
          Length = 159

 Score = 30.4 bits (68), Expect = 0.40
 Identities = 16/68 (23%), Positives = 31/68 (45%)

Query: 190 NSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLD 249
            S ++Q A+ + +      L+     + T++ N+   LD QA  L  M + +      +D
Sbjct: 40  QSADKQRALEETKAYTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVD 99

Query: 250 ATMKKVAK 257
              +KVA+
Sbjct: 100 IHKEKVAR 107


>3pvu_A Beta-adrenergic receptor kinase 1; transferase,
           serine/threonine-protein kinase, ATP-binding, I
           membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A*
           3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A*
           1bak_A
          Length = 695

 Score = 29.5 bits (66), Expect = 1.7
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 6/71 (8%)

Query: 80  SREKDRGGDHMSSKPLLSDDFHSPSPVKISAPFGSSRQTKYSKLNNQMDSPNR-SWLSNS 138
            + K++   H     L  D        K+  PF +  Q +Y  L      PNR  W    
Sbjct: 540 KKTKNKQLGHEEDYALGKDCIMHGYMSKMGNPFLTQWQRRYFYL-----FPNRLEWRGEG 594

Query: 139 INQQSAMFDQQ 149
              QS +  ++
Sbjct: 595 EAPQSLLTMEE 605


>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein
           prenylation, metal-binding, prenyltransferase, zinc,
           phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A*
           3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A*
           3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A*
          Length = 331

 Score = 28.6 bits (63), Expect = 3.1
 Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 8/85 (9%)

Query: 1   EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIE------WDLEDL 54
           + +   N  R + +     K    ++ +++ EL +  + LR + +S        W L  L
Sbjct: 62  DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 121

Query: 55  EDTINILYNNFDFIEHLCMKDTMNY 79
            +         +        D  N+
Sbjct: 122 PE--PNWARELELCARFLEADERNF 144


>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein,
           alpha-helical bundle, complex all- beta folds,
           structural protein; 2.10A {Salmonella typhimurium}
          Length = 463

 Score = 28.3 bits (62), Expect = 3.7
 Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 13/84 (15%)

Query: 135 LSNSINQQSAMFDQQ----DSQLDMLSETIGTLTVQVRRQTKYSKLNNQMDSPNRSWVSN 190
           L N           Q    +  +      I     Q+      + LN+Q+   +R     
Sbjct: 76  LVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQI------ANLNDQI---SRMTGVG 126

Query: 191 SINQQSAMFDQQDSQLDMLSETIG 214
           +    + + DQ+D  +  L++ +G
Sbjct: 127 AGASPNDLLDQRDQLVSELNKIVG 150


>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein
           transport; 2.80A {Homo sapiens} PDB: 3frv_A
          Length = 179

 Score = 27.4 bits (60), Expect = 4.7
 Identities = 9/108 (8%), Positives = 31/108 (28%), Gaps = 4/108 (3%)

Query: 138 SINQQSAMFDQQDSQLDMLSETIGTLTVQVRRQTKYSKLNNQMDSPNRSWVSNSINQQSA 197
              +  +      + ++ +   +      +R      K    M +         I     
Sbjct: 65  RSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMR 124

Query: 198 MFDQQDSQLDMLSETI-GTLKTVSRNIGSELDEQALM---LDEMGNEM 241
              ++  +  ++ E +  T +++      E + +  +   L E+    
Sbjct: 125 ELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGA 172


>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP,
           pseudouridine synthase, guide RNA, isomerase
           biosynthetic protein-RNA complex; HET: ATP; 2.30A
           {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
          Length = 104

 Score = 26.5 bits (58), Expect = 4.8
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 246 SKLDATMKKVAKVLHISN-GEMLDEMGNEMECTESKLDATMKKVAKVLHI 294
            K    MK++ KVLH +  G ++          +  +D  ++ V  V  +
Sbjct: 2   EKQGEKMKRLGKVLHYAKQGFLIVRTNWVPSLNDRVVDKRLQFVGIVKDV 51


>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
            2, heavy meromyosin, essential light chain, motor
            protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
            PDB: 3j04_A 3dtp_B 3dtp_A
          Length = 1184

 Score = 27.5 bits (61), Expect = 8.5
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 1    EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
            + + A+ K R L     +L+E+  +    R++ E    +L   L +++ +LED  DT   
Sbjct: 1110 QKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTAT 1169

Query: 61   L 61
             
Sbjct: 1170 Q 1170


>1wsc_A Hypothetical protein ST0229; structural genomics, function unknown
           protein, unknown function; 2.45A {Sulfolobus tokodaii}
           SCOP: d.309.1.1
          Length = 230

 Score = 26.9 bits (59), Expect = 9.0
 Identities = 16/95 (16%), Positives = 39/95 (41%), Gaps = 7/95 (7%)

Query: 145 MFDQQDSQLDMLSETIGTLTVQVRRQTKYSKLNNQ---MDSPNRSWVSNSINQQSAMF-- 199
           M  +Q   ++ L+E +G + +++ R +  +KL      ++    S     +N++   F  
Sbjct: 1   MSQEQLVAVNELNENLGKVLIKIARDSIANKLGILKINLEDYLSSLNDPILNKKGLAFVT 60

Query: 200 -DQQDSQLDMLSETIGTLKTVSRNIGSELDEQALM 233
            +        L   IG ++ V   +   + + A+ 
Sbjct: 61  LETYYGNSTSLRGCIGYVEAV-APLKEIVSKAAIA 94


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.311    0.125    0.349 

Gapped
Lambda     K      H
   0.267   0.0559    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,309,295
Number of extensions: 232105
Number of successful extensions: 397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 387
Number of HSP's successfully gapped: 39
Length of query: 318
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 224
Effective length of database: 4,077,219
Effective search space: 913297056
Effective search space used: 913297056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.1 bits)