RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15562
         (318 letters)



>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus
          norvegicus) [TaxId: 10116]}
          Length = 106

 Score = 66.4 bits (162), Expect = 1e-14
 Identities = 35/64 (54%), Positives = 49/64 (76%), Gaps = 2/64 (3%)

Query: 1  EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
          EV KA+N  + L++RW EL +   A+   R+E++WTT ELRN+LRSIEWDLEDL++TI+I
Sbjct: 10 EVQKAVNTAQGLFQRWTELLQGPSAAT--REEIDWTTNELRNNLRSIEWDLEDLDETISI 67

Query: 61 LYNN 64
          +  N
Sbjct: 68 VEAN 71


>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA
           {Caulobacter crescentus [TaxId: 155892]}
          Length = 104

 Score = 31.9 bits (72), Expect = 0.027
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 1/70 (1%)

Query: 192 INQQSAMFDQQDSQLDMLSETIGTLKTVSRNIG-SELDEQALMLDEMGNEMECTESKLDA 250
             Q +      D       + + T+K  +R +G   L E     +     +E   + LDA
Sbjct: 27  REQAALWAPMLDPTHPGWKDAVHTVKGAARGVGAFNLGEVCERCEAGQESLEGVRTALDA 86

Query: 251 TMKKVAKVLH 260
            +  +A   H
Sbjct: 87  ALLDIAAYAH 96


>d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia
           coli [TaxId: 562]}
          Length = 309

 Score = 27.5 bits (60), Expect = 2.0
 Identities = 8/50 (16%), Positives = 15/50 (30%)

Query: 49  WDLEDLEDTINILYNNFDFIEHLCMKDTMNYSREKDRGGDHMSSKPLLSD 98
           W L +       L  +  + E  C  +     RE        +  P  ++
Sbjct: 103 WSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATN 152


>d1kjna_ c.115.1.1 (A:) Hypothetical protein MTH777 (MT0777)
           {Archaeon Methanobacterium thermoautotrophicum [TaxId:
           145262]}
          Length = 152

 Score = 25.9 bits (57), Expect = 4.2
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 50  DLEDLEDTINILYNNFDFIEHLCMKDTMNYSREKDRGGDHMSSKP 94
           D + LE+ +N +    D  E +  +   N +  + R    M  KP
Sbjct: 109 DADVLEELVNEIMETLD-AEIIAARAHHNPAPLRVRIDRFMEEKP 152


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.125    0.349 

Gapped
Lambda     K      H
   0.267   0.0532    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,051,475
Number of extensions: 44914
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 9
Length of query: 318
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 233
Effective length of database: 1,240,546
Effective search space: 289047218
Effective search space used: 289047218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.6 bits)