BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15563
(614 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GP3|A Chain A, The Crystal Structure Of Human Fascin 1 K358a Mutant
pdb|4GP3|B Chain B, The Crystal Structure Of Human Fascin 1 K358a Mutant
Length = 493
Score = 218 bits (556), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 121/289 (41%), Positives = 168/289 (58%), Gaps = 27/289 (9%)
Query: 263 IGLINAQFKYLTAETFGFKINANGASLKKKQVWILE-PANGGDTLSVYLRSHLGKYLAVD 321
GLIN KYLTAE FGFK+NA+ +SLKKKQ+W LE P + + +V LRSHLG+YLA D
Sbjct: 14 FGLINCGNKYLTAEAFGFKVNASASSLKKKQIWTLEQPPDEAGSAAVCLRSHLGRYLAAD 73
Query: 322 SFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIPANPEYWL 381
GNVTCE + P F I D+G+W+ +++ + G + D+L C A+ + E W
Sbjct: 74 KDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEKWS 133
Query: 382 AHLAARPQVNLRSVGRKRFAHLSEN-LDEIHVDANIPWGEDTLFTLEFRAEDSGKYAVHT 440
H+A PQVN+ SV RKR+AHLS DEI VD ++PWG D+L TL F+ + +Y+V T
Sbjct: 134 VHIAMHPQVNIYSVTRKRYAHLSARPADEIAVDRDVPWGVDSLITLAFQDQ---RYSVQT 190
Query: 441 CNNKYLSREGKLVDTCNANCLFSLEYHAGEFCFLYLFIWLRPIRSPATGQIALRDNSGAY 500
++++L +G+LV ++LE+ +G++A RD G Y
Sbjct: 191 ADHRFLRHDGRLVARPEPATGYTLEFR--------------------SGKVAFRDCEGRY 230
Query: 501 LSPIGSKAILKT-RSNTVTKDELFTLEDSLPQASFIAALNSKYVSVKQG 548
L+P G LK ++ V KDELF LE S Q AA N + VS +QG
Sbjct: 231 LAPSGPSGTLKAGKATKVGKDELFALEQSCAQVVLQAA-NERNVSTRQG 278
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 78/123 (63%), Gaps = 3/123 (2%)
Query: 63 KYLTAETFGFKINANGASLKKKQDGVWILE-PANGGDTLSVYLRSHLGKYLAVDSFGNVT 121
KYLTAE FGFK+NA+ +SLKKKQ +W LE P + + +V LRSHLG+YLA D GNVT
Sbjct: 22 KYLTAEAFGFKVNASASSLKKKQ--IWTLEQPPDEAGSAAVCLRSHLGRYLAADKDGNVT 79
Query: 122 CEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIPANPEYWLAHLAAR 181
CE + P F I D+G+W+ +++ + G + D+L C A+ + E W H+A
Sbjct: 80 CEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEKWSVHIAMH 139
Query: 182 PQL 184
PQ+
Sbjct: 140 PQV 142
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 546 KQGQIALRDNSGAYLSPIGSKAILKT-RSNTVTKDELFTLEDSLPQASFIAALNSKYVSV 604
+ G++A RD G YL+P G LK ++ V KDELF LE S Q AA N + VS
Sbjct: 217 RSGKVAFRDCEGRYLAPSGPSGTLKAGKATKVGKDELFALEQSCAQVVLQAA-NERNVST 275
Query: 605 KQ 606
+Q
Sbjct: 276 RQ 277
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 62/172 (36%), Gaps = 22/172 (12%)
Query: 279 GFKINANGASLKKKQVWILEPANGGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSL 338
G ++AN ++ + LE DT R+H GKY + + G V A K
Sbjct: 278 GMDLSANQDEETDQETFQLEIDR--DTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCY 335
Query: 339 FQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIPANPEYWLAHLAARPQVNLRS---- 394
F I D + + + A + +L + + + E +L L RP + R
Sbjct: 336 FDIEWRDR-RITLRASNGKFVTSAKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGF 394
Query: 395 VG-RKRFAHLSENLDEIHVDANIPWGEDTLFTLEFRAEDSGKYAVHTCNNKY 445
+G RK L N V F LEF + G Y + KY
Sbjct: 395 IGCRKVTGTLDANRSSYDV-----------FQLEF---NDGAYNIKDSTGKY 432
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Query: 98 DTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGAS 157
DT R+H GKY + + G V A K F I D + + + A
Sbjct: 301 DTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFDIEWRDR-RITLRASNGKFVTSAK 359
Query: 158 SDKLICTAKIPANPEYWLAHLAARP 182
+ +L + + + E +L L RP
Sbjct: 360 NGQLAASVETAGDSELFLMKLINRP 384
>pdb|1DFC|A Chain A, Crystal Structure Of Human Fascin, An Actin-Crosslinking
Protein
pdb|1DFC|B Chain B, Crystal Structure Of Human Fascin, An Actin-Crosslinking
Protein
pdb|3LLP|A Chain A, 1.8 Angstrom Human Fascin 1 Crystal Structure
pdb|3LLP|B Chain B, 1.8 Angstrom Human Fascin 1 Crystal Structure
Length = 493
Score = 218 bits (556), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 121/289 (41%), Positives = 168/289 (58%), Gaps = 27/289 (9%)
Query: 263 IGLINAQFKYLTAETFGFKINANGASLKKKQVWILE-PANGGDTLSVYLRSHLGKYLAVD 321
GLIN KYLTAE FGFK+NA+ +SLKKKQ+W LE P + + +V LRSHLG+YLA D
Sbjct: 14 FGLINCGNKYLTAEAFGFKVNASASSLKKKQIWTLEQPPDEAGSAAVCLRSHLGRYLAAD 73
Query: 322 SFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIPANPEYWL 381
GNVTCE + P F I D+G+W+ +++ + G + D+L C A+ + E W
Sbjct: 74 KDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEKWS 133
Query: 382 AHLAARPQVNLRSVGRKRFAHLSEN-LDEIHVDANIPWGEDTLFTLEFRAEDSGKYAVHT 440
H+A PQVN+ SV RKR+AHLS DEI VD ++PWG D+L TL F+ + +Y+V T
Sbjct: 134 VHIAMHPQVNIYSVTRKRYAHLSARPADEIAVDRDVPWGVDSLITLAFQDQ---RYSVQT 190
Query: 441 CNNKYLSREGKLVDTCNANCLFSLEYHAGEFCFLYLFIWLRPIRSPATGQIALRDNSGAY 500
++++L +G+LV ++LE+ +G++A RD G Y
Sbjct: 191 ADHRFLRHDGRLVARPEPATGYTLEFR--------------------SGKVAFRDCEGRY 230
Query: 501 LSPIGSKAILKT-RSNTVTKDELFTLEDSLPQASFIAALNSKYVSVKQG 548
L+P G LK ++ V KDELF LE S Q AA N + VS +QG
Sbjct: 231 LAPSGPSGTLKAGKATKVGKDELFALEQSCAQVVLQAA-NERNVSTRQG 278
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 78/123 (63%), Gaps = 3/123 (2%)
Query: 63 KYLTAETFGFKINANGASLKKKQDGVWILE-PANGGDTLSVYLRSHLGKYLAVDSFGNVT 121
KYLTAE FGFK+NA+ +SLKKKQ +W LE P + + +V LRSHLG+YLA D GNVT
Sbjct: 22 KYLTAEAFGFKVNASASSLKKKQ--IWTLEQPPDEAGSAAVCLRSHLGRYLAADKDGNVT 79
Query: 122 CEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIPANPEYWLAHLAAR 181
CE + P F I D+G+W+ +++ + G + D+L C A+ + E W H+A
Sbjct: 80 CEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEKWSVHIAMH 139
Query: 182 PQL 184
PQ+
Sbjct: 140 PQV 142
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 546 KQGQIALRDNSGAYLSPIGSKAILKT-RSNTVTKDELFTLEDSLPQASFIAALNSKYVSV 604
+ G++A RD G YL+P G LK ++ V KDELF LE S Q AA N + VS
Sbjct: 217 RSGKVAFRDCEGRYLAPSGPSGTLKAGKATKVGKDELFALEQSCAQVVLQAA-NERNVST 275
Query: 605 KQ 606
+Q
Sbjct: 276 RQ 277
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 61/172 (35%), Gaps = 22/172 (12%)
Query: 279 GFKINANGASLKKKQVWILEPANGGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSL 338
G ++AN ++ + LE DT R+H GKY + + G V A K
Sbjct: 278 GMDLSANQDEETDQETFQLEIDR--DTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCY 335
Query: 339 FQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIPANPEYWLAHLAARPQVNLRS---- 394
F I D + + + + +L + + + E +L L RP + R
Sbjct: 336 FDIEWRDR-RITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGF 394
Query: 395 VG-RKRFAHLSENLDEIHVDANIPWGEDTLFTLEFRAEDSGKYAVHTCNNKY 445
+G RK L N V F LEF + G Y + KY
Sbjct: 395 IGCRKVTGTLDANRSSYDV-----------FQLEF---NDGAYNIKDSTGKY 432
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Query: 98 DTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGAS 157
DT R+H GKY + + G V A K F I D + + +
Sbjct: 301 DTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFDIEWRDR-RITLRASNGKFVTSKK 359
Query: 158 SDKLICTAKIPANPEYWLAHLAARP 182
+ +L + + + E +L L RP
Sbjct: 360 NGQLAASVETAGDSELFLMKLINRP 384
>pdb|3P53|A Chain A, Structure Of Fascin
pdb|3P53|B Chain B, Structure Of Fascin
Length = 496
Score = 218 bits (556), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 121/289 (41%), Positives = 168/289 (58%), Gaps = 27/289 (9%)
Query: 263 IGLINAQFKYLTAETFGFKINANGASLKKKQVWILE-PANGGDTLSVYLRSHLGKYLAVD 321
GLIN KYLTAE FGFK+NA+ +SLKKKQ+W LE P + + +V LRSHLG+YLA D
Sbjct: 17 FGLINCGNKYLTAEAFGFKVNASASSLKKKQIWTLEQPPDEAGSAAVCLRSHLGRYLAAD 76
Query: 322 SFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIPANPEYWL 381
GNVTCE + P F I D+G+W+ +++ + G + D+L C A+ + E W
Sbjct: 77 KDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEKWS 136
Query: 382 AHLAARPQVNLRSVGRKRFAHLSEN-LDEIHVDANIPWGEDTLFTLEFRAEDSGKYAVHT 440
H+A PQVN+ SV RKR+AHLS DEI VD ++PWG D+L TL F+ + +Y+V T
Sbjct: 137 VHIAMHPQVNIYSVTRKRYAHLSARPADEIAVDRDVPWGVDSLITLAFQDQ---RYSVQT 193
Query: 441 CNNKYLSREGKLVDTCNANCLFSLEYHAGEFCFLYLFIWLRPIRSPATGQIALRDNSGAY 500
++++L +G+LV ++LE+ +G++A RD G Y
Sbjct: 194 ADHRFLRHDGRLVARPEPATGYTLEFR--------------------SGKVAFRDCEGRY 233
Query: 501 LSPIGSKAILKT-RSNTVTKDELFTLEDSLPQASFIAALNSKYVSVKQG 548
L+P G LK ++ V KDELF LE S Q AA N + VS +QG
Sbjct: 234 LAPSGPSGTLKAGKATKVGKDELFALEQSCAQVVLQAA-NERNVSTRQG 281
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 78/123 (63%), Gaps = 3/123 (2%)
Query: 63 KYLTAETFGFKINANGASLKKKQDGVWILE-PANGGDTLSVYLRSHLGKYLAVDSFGNVT 121
KYLTAE FGFK+NA+ +SLKKKQ +W LE P + + +V LRSHLG+YLA D GNVT
Sbjct: 25 KYLTAEAFGFKVNASASSLKKKQ--IWTLEQPPDEAGSAAVCLRSHLGRYLAADKDGNVT 82
Query: 122 CEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIPANPEYWLAHLAAR 181
CE + P F I D+G+W+ +++ + G + D+L C A+ + E W H+A
Sbjct: 83 CEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEKWSVHIAMH 142
Query: 182 PQL 184
PQ+
Sbjct: 143 PQV 145
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 546 KQGQIALRDNSGAYLSPIGSKAILKT-RSNTVTKDELFTLEDSLPQASFIAALNSKYVSV 604
+ G++A RD G YL+P G LK ++ V KDELF LE S Q AA N + VS
Sbjct: 220 RSGKVAFRDCEGRYLAPSGPSGTLKAGKATKVGKDELFALEQSCAQVVLQAA-NERNVST 278
Query: 605 KQ 606
+Q
Sbjct: 279 RQ 280
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 61/172 (35%), Gaps = 22/172 (12%)
Query: 279 GFKINANGASLKKKQVWILEPANGGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSL 338
G ++AN ++ + LE DT R+H GKY + + G V A K
Sbjct: 281 GMDLSANQDEETDQETFQLEIDR--DTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCY 338
Query: 339 FQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIPANPEYWLAHLAARPQVNLRS---- 394
F I D + + + + +L + + + E +L L RP + R
Sbjct: 339 FDIEWRDR-RITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGF 397
Query: 395 VG-RKRFAHLSENLDEIHVDANIPWGEDTLFTLEFRAEDSGKYAVHTCNNKY 445
+G RK L N V F LEF + G Y + KY
Sbjct: 398 IGCRKVTGTLDANRSSYDV-----------FQLEF---NDGAYNIKDSTGKY 435
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Query: 98 DTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGAS 157
DT R+H GKY + + G V A K F I D + + +
Sbjct: 304 DTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFDIEWRDR-RITLRASNGKFVTSKK 362
Query: 158 SDKLICTAKIPANPEYWLAHLAARP 182
+ +L + + + E +L L RP
Sbjct: 363 NGQLAASVETAGDSELFLMKLINRP 387
>pdb|4GOV|A Chain A, The Crystal Structure Of Human Fascin 1 S39d Mutant
pdb|4GOV|B Chain B, The Crystal Structure Of Human Fascin 1 S39d Mutant
Length = 493
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/289 (41%), Positives = 167/289 (57%), Gaps = 27/289 (9%)
Query: 263 IGLINAQFKYLTAETFGFKINANGASLKKKQVWILE-PANGGDTLSVYLRSHLGKYLAVD 321
GLIN KYLTAE FGFK+NA+ + LKKKQ+W LE P + + +V LRSHLG+YLA D
Sbjct: 14 FGLINCGNKYLTAEAFGFKVNASASDLKKKQIWTLEQPPDEAGSAAVCLRSHLGRYLAAD 73
Query: 322 SFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIPANPEYWL 381
GNVTCE + P F I D+G+W+ +++ + G + D+L C A+ + E W
Sbjct: 74 KDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEKWS 133
Query: 382 AHLAARPQVNLRSVGRKRFAHLSEN-LDEIHVDANIPWGEDTLFTLEFRAEDSGKYAVHT 440
H+A PQVN+ SV RKR+AHLS DEI VD ++PWG D+L TL F+ + +Y+V T
Sbjct: 134 VHIAMHPQVNIYSVTRKRYAHLSARPADEIAVDRDVPWGVDSLITLAFQDQ---RYSVQT 190
Query: 441 CNNKYLSREGKLVDTCNANCLFSLEYHAGEFCFLYLFIWLRPIRSPATGQIALRDNSGAY 500
++++L +G+LV ++LE+ +G++A RD G Y
Sbjct: 191 ADHRFLRHDGRLVARPEPATGYTLEFR--------------------SGKVAFRDCEGRY 230
Query: 501 LSPIGSKAILKT-RSNTVTKDELFTLEDSLPQASFIAALNSKYVSVKQG 548
L+P G LK ++ V KDELF LE S Q AA N + VS +QG
Sbjct: 231 LAPSGPSGTLKAGKATKVGKDELFALEQSCAQVVLQAA-NERNVSTRQG 278
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 77/123 (62%), Gaps = 3/123 (2%)
Query: 63 KYLTAETFGFKINANGASLKKKQDGVWILE-PANGGDTLSVYLRSHLGKYLAVDSFGNVT 121
KYLTAE FGFK+NA+ + LKKKQ +W LE P + + +V LRSHLG+YLA D GNVT
Sbjct: 22 KYLTAEAFGFKVNASASDLKKKQ--IWTLEQPPDEAGSAAVCLRSHLGRYLAADKDGNVT 79
Query: 122 CEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIPANPEYWLAHLAAR 181
CE + P F I D+G+W+ +++ + G + D+L C A+ + E W H+A
Sbjct: 80 CEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEKWSVHIAMH 139
Query: 182 PQL 184
PQ+
Sbjct: 140 PQV 142
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 546 KQGQIALRDNSGAYLSPIGSKAILKT-RSNTVTKDELFTLEDSLPQASFIAALNSKYVSV 604
+ G++A RD G YL+P G LK ++ V KDELF LE S Q AA N + VS
Sbjct: 217 RSGKVAFRDCEGRYLAPSGPSGTLKAGKATKVGKDELFALEQSCAQVVLQAA-NERNVST 275
Query: 605 KQ 606
+Q
Sbjct: 276 RQ 277
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 61/172 (35%), Gaps = 22/172 (12%)
Query: 279 GFKINANGASLKKKQVWILEPANGGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSL 338
G ++AN ++ + LE DT R+H GKY + + G V A K
Sbjct: 278 GMDLSANQDEETDQETFQLEIDR--DTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCY 335
Query: 339 FQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIPANPEYWLAHLAARPQVNLRS---- 394
F I D + + + + +L + + + E +L L RP + R
Sbjct: 336 FDIEWRDR-RITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGF 394
Query: 395 VG-RKRFAHLSENLDEIHVDANIPWGEDTLFTLEFRAEDSGKYAVHTCNNKY 445
+G RK L N V F LEF + G Y + KY
Sbjct: 395 IGCRKVTGTLDANRSSYDV-----------FQLEF---NDGAYNIKDSTGKY 432
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Query: 98 DTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGAS 157
DT R+H GKY + + G V A K F I D + + +
Sbjct: 301 DTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFDIEWRDR-RITLRASNGKFVTSKK 359
Query: 158 SDKLICTAKIPANPEYWLAHLAARP 182
+ +L + + + E +L L RP
Sbjct: 360 NGQLAASVETAGDSELFLMKLINRP 384
>pdb|4GOY|A Chain A, The Crystal Structure Of Human Fascin 1 K41a Mutant
pdb|4GOY|B Chain B, The Crystal Structure Of Human Fascin 1 K41a Mutant
Length = 493
Score = 216 bits (550), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 120/289 (41%), Positives = 167/289 (57%), Gaps = 27/289 (9%)
Query: 263 IGLINAQFKYLTAETFGFKINANGASLKKKQVWILE-PANGGDTLSVYLRSHLGKYLAVD 321
GLIN KYLTAE FGFK+NA+ +SL KKQ+W LE P + + +V LRSHLG+YLA D
Sbjct: 14 FGLINCGNKYLTAEAFGFKVNASASSLAKKQIWTLEQPPDEAGSAAVCLRSHLGRYLAAD 73
Query: 322 SFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIPANPEYWL 381
GNVTCE + P F I D+G+W+ +++ + G + D+L C A+ + E W
Sbjct: 74 KDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEKWS 133
Query: 382 AHLAARPQVNLRSVGRKRFAHLSEN-LDEIHVDANIPWGEDTLFTLEFRAEDSGKYAVHT 440
H+A PQVN+ SV RKR+AHLS DEI VD ++PWG D+L TL F+ + +Y+V T
Sbjct: 134 VHIAMHPQVNIYSVTRKRYAHLSARPADEIAVDRDVPWGVDSLITLAFQDQ---RYSVQT 190
Query: 441 CNNKYLSREGKLVDTCNANCLFSLEYHAGEFCFLYLFIWLRPIRSPATGQIALRDNSGAY 500
++++L +G+LV ++LE+ +G++A RD G Y
Sbjct: 191 ADHRFLRHDGRLVARPEPATGYTLEFR--------------------SGKVAFRDCEGRY 230
Query: 501 LSPIGSKAILKT-RSNTVTKDELFTLEDSLPQASFIAALNSKYVSVKQG 548
L+P G LK ++ V KDELF LE S Q AA N + VS +QG
Sbjct: 231 LAPSGPSGTLKAGKATKVGKDELFALEQSCAQVVLQAA-NERNVSTRQG 278
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 77/123 (62%), Gaps = 3/123 (2%)
Query: 63 KYLTAETFGFKINANGASLKKKQDGVWILE-PANGGDTLSVYLRSHLGKYLAVDSFGNVT 121
KYLTAE FGFK+NA+ +SL KKQ +W LE P + + +V LRSHLG+YLA D GNVT
Sbjct: 22 KYLTAEAFGFKVNASASSLAKKQ--IWTLEQPPDEAGSAAVCLRSHLGRYLAADKDGNVT 79
Query: 122 CEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIPANPEYWLAHLAAR 181
CE + P F I D+G+W+ +++ + G + D+L C A+ + E W H+A
Sbjct: 80 CEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEKWSVHIAMH 139
Query: 182 PQL 184
PQ+
Sbjct: 140 PQV 142
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 546 KQGQIALRDNSGAYLSPIGSKAILKT-RSNTVTKDELFTLEDSLPQASFIAALNSKYVSV 604
+ G++A RD G YL+P G LK ++ V KDELF LE S Q AA N + VS
Sbjct: 217 RSGKVAFRDCEGRYLAPSGPSGTLKAGKATKVGKDELFALEQSCAQVVLQAA-NERNVST 275
Query: 605 KQ 606
+Q
Sbjct: 276 RQ 277
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 61/172 (35%), Gaps = 22/172 (12%)
Query: 279 GFKINANGASLKKKQVWILEPANGGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSL 338
G ++AN ++ + LE DT R+H GKY + + G V A K
Sbjct: 278 GMDLSANQDEETDQETFQLEIDR--DTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCY 335
Query: 339 FQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIPANPEYWLAHLAARPQVNLRS---- 394
F I D + + + + +L + + + E +L L RP + R
Sbjct: 336 FDIEWRDR-RITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGF 394
Query: 395 VG-RKRFAHLSENLDEIHVDANIPWGEDTLFTLEFRAEDSGKYAVHTCNNKY 445
+G RK L N V F LEF + G Y + KY
Sbjct: 395 IGCRKVTGTLDANRSSYDV-----------FQLEF---NDGAYNIKDSTGKY 432
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Query: 98 DTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGAS 157
DT R+H GKY + + G V A K F I D + + +
Sbjct: 301 DTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFDIEWRDR-RITLRASNGKFVTSKK 359
Query: 158 SDKLICTAKIPANPEYWLAHLAARP 182
+ +L + + + E +L L RP
Sbjct: 360 NGQLAASVETAGDSELFLMKLINRP 384
>pdb|4GP0|A Chain A, The Crystal Structure Of Human Fascin 1 R149a K150a R151a
Mutant
pdb|4GP0|B Chain B, The Crystal Structure Of Human Fascin 1 R149a K150a R151a
Mutant
Length = 493
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/289 (40%), Positives = 165/289 (57%), Gaps = 27/289 (9%)
Query: 263 IGLINAQFKYLTAETFGFKINANGASLKKKQVWILE-PANGGDTLSVYLRSHLGKYLAVD 321
GLIN KYLTAE FGFK+NA+ +SLKKKQ+W LE P + + +V LRSHLG+YLA D
Sbjct: 14 FGLINCGNKYLTAEAFGFKVNASASSLKKKQIWTLEQPPDEAGSAAVCLRSHLGRYLAAD 73
Query: 322 SFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIPANPEYWL 381
GNVTCE + P F I D+G+W+ +++ + G + D+L C A+ + E W
Sbjct: 74 KDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEKWS 133
Query: 382 AHLAARPQVNLRSVGRKRFAHLSEN-LDEIHVDANIPWGEDTLFTLEFRAEDSGKYAVHT 440
H+A PQVN+ SV +AHLS DEI VD ++PWG D+L TL F+ + +Y+V T
Sbjct: 134 VHIAMHPQVNIYSVTAAAYAHLSARPADEIAVDRDVPWGVDSLITLAFQDQ---RYSVQT 190
Query: 441 CNNKYLSREGKLVDTCNANCLFSLEYHAGEFCFLYLFIWLRPIRSPATGQIALRDNSGAY 500
++++L +G+LV ++LE+ +G++A RD G Y
Sbjct: 191 ADHRFLRHDGRLVARPEPATGYTLEFR--------------------SGKVAFRDCEGRY 230
Query: 501 LSPIGSKAILKT-RSNTVTKDELFTLEDSLPQASFIAALNSKYVSVKQG 548
L+P G LK ++ V KDELF LE S Q AA N + VS +QG
Sbjct: 231 LAPSGPSGTLKAGKATKVGKDELFALEQSCAQVVLQAA-NERNVSTRQG 278
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 78/123 (63%), Gaps = 3/123 (2%)
Query: 63 KYLTAETFGFKINANGASLKKKQDGVWILE-PANGGDTLSVYLRSHLGKYLAVDSFGNVT 121
KYLTAE FGFK+NA+ +SLKKKQ +W LE P + + +V LRSHLG+YLA D GNVT
Sbjct: 22 KYLTAEAFGFKVNASASSLKKKQ--IWTLEQPPDEAGSAAVCLRSHLGRYLAADKDGNVT 79
Query: 122 CEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIPANPEYWLAHLAAR 181
CE + P F I D+G+W+ +++ + G + D+L C A+ + E W H+A
Sbjct: 80 CEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEKWSVHIAMH 139
Query: 182 PQL 184
PQ+
Sbjct: 140 PQV 142
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 546 KQGQIALRDNSGAYLSPIGSKAILKT-RSNTVTKDELFTLEDSLPQASFIAALNSKYVSV 604
+ G++A RD G YL+P G LK ++ V KDELF LE S Q AA N + VS
Sbjct: 217 RSGKVAFRDCEGRYLAPSGPSGTLKAGKATKVGKDELFALEQSCAQVVLQAA-NERNVST 275
Query: 605 KQ 606
+Q
Sbjct: 276 RQ 277
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 61/172 (35%), Gaps = 22/172 (12%)
Query: 279 GFKINANGASLKKKQVWILEPANGGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSL 338
G ++AN ++ + LE DT R+H GKY + + G V A K
Sbjct: 278 GMDLSANQDEETDQETFQLEIDR--DTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCY 335
Query: 339 FQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIPANPEYWLAHLAARPQVNLRS---- 394
F I D + + + + +L + + + E +L L RP + R
Sbjct: 336 FDIEWRDR-RITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGF 394
Query: 395 VG-RKRFAHLSENLDEIHVDANIPWGEDTLFTLEFRAEDSGKYAVHTCNNKY 445
+G RK L N V F LEF + G Y + KY
Sbjct: 395 IGCRKVTGTLDANRSSYDV-----------FQLEF---NDGAYNIKDSTGKY 432
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Query: 98 DTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGAS 157
DT R+H GKY + + G V A K F I D + + +
Sbjct: 301 DTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFDIEWRDR-RITLRASNGKFVTSKK 359
Query: 158 SDKLICTAKIPANPEYWLAHLAARP 182
+ +L + + + E +L L RP
Sbjct: 360 NGQLAASVETAGDSELFLMKLINRP 384
>pdb|3Q7W|A Chain A, Crystal Structure Of Symfoil-4p/pv1: De Novo Designed
Beta-trefoil Architecture With Symmetric Primary
Structure, Primitive Version 1
pdb|3Q7X|A Chain A, Crystal Structure Of Symfoil-4p/pv1: De Novo Designed
Beta-trefoil Architecture With Symmetric Primary
Structure, Primitive Version 1
Length = 132
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 91 LEPANGGDTLSVYLRS-HLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKT 149
+ P G+ L LRS G++L ++ G V D +PG FQI G+ ++
Sbjct: 42 ISPEGNGEVL---LRSTETGQFLRINPDGTVDGTRDRSDPGIQFQISPEGNGEVLLRSTE 98
Query: 150 RGYFLGASSDKLICTAKIPANP 171
G FL + D + + ++P
Sbjct: 99 TGQFLRINPDGTVDGTRDRSDP 120
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 297 LEPANGGDTLSVYLRS-HLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKT 355
+ P G+ L LRS G++L ++ G V D +PG FQI G+ ++
Sbjct: 42 ISPEGNGEVL---LRSTETGQFLRINPDGTVDGTRDRSDPGIQFQISPEGNGEVLLRSTE 98
Query: 356 RGYFLGASSDKLICTAKIPANP 377
G FL + D + + ++P
Sbjct: 99 TGQFLRINPDGTVDGTRDRSDP 120
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 102 VYLRS-HLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDK 160
V LRS G++L ++ G V D +PG FQI G+ ++ G FL + D
Sbjct: 8 VLLRSTETGQFLRINPDGTVDGTRDRSDPGIQFQISPEGNGEVLLRSTETGQFLRINPDG 67
Query: 161 LICTAKIPANP 171
+ + ++P
Sbjct: 68 TVDGTRDRSDP 78
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 308 VYLRS-HLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDK 366
V LRS G++L ++ G V D +PG FQI G+ ++ G FL + D
Sbjct: 8 VLLRSTETGQFLRINPDGTVDGTRDRSDPGIQFQISPEGNGEVLLRSTETGQFLRINPDG 67
Query: 367 LICTAKIPANP 377
+ + ++P
Sbjct: 68 TVDGTRDRSDP 78
>pdb|3O4D|A Chain A, Crystal Structure Of Symfoil-4p: De Novo Designed
Beta-Trefoil Architecture With Symmetric Primary
Structure
Length = 142
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 91 LEPANGGDTLSVYLRS-HLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKT 149
+ P G+ L L+S G+YL ++ G V D +P FQI G+ K+
Sbjct: 52 ISPEGNGEVL---LKSTETGQYLRINPDGTVDGTRDRSDPHIQFQISPEGNGEVLLKSTE 108
Query: 150 RGYFLGASSDKLICTAKIPANP 171
G +L + D + + ++P
Sbjct: 109 TGQYLRINPDGTVDGTRDRSDP 130
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 297 LEPANGGDTLSVYLRS-HLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKT 355
+ P G+ L L+S G+YL ++ G V D +P FQI G+ K+
Sbjct: 52 ISPEGNGEVL---LKSTETGQYLRINPDGTVDGTRDRSDPHIQFQISPEGNGEVLLKSTE 108
Query: 356 RGYFLGASSDKLICTAKIPANP 377
G +L + D + + ++P
Sbjct: 109 TGQYLRINPDGTVDGTRDRSDP 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,729,046
Number of Sequences: 62578
Number of extensions: 759789
Number of successful extensions: 1788
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1686
Number of HSP's gapped (non-prelim): 67
length of query: 614
length of database: 14,973,337
effective HSP length: 105
effective length of query: 509
effective length of database: 8,402,647
effective search space: 4276947323
effective search space used: 4276947323
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)