RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15563
(614 letters)
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis,
CE migration, acetylation, actin-binding, cytoplasm,
phosphopr protein binding; HET: EPE; 1.80A {Homo
sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A*
Length = 493
Score = 301 bits (771), Expect = 1e-95
Identities = 132/373 (35%), Positives = 190/373 (50%), Gaps = 54/373 (14%)
Query: 261 WTIGLINAQFKYLTAETFGFKINANGASLKKKQVWILEPANG-GDTLSVYLRSHLGKYLA 319
GLIN KYLTAE FGFK+NA+ +SLKKKQ+W LE + +V LRSHLG+YLA
Sbjct: 12 IQFGLINCGNKYLTAEAFGFKVNASASSLKKKQIWTLEQPPDEAGSAAVCLRSHLGRYLA 71
Query: 320 VDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIPANPEY 379
D GNVTCE + P F I D+G+W+ +++ + G + D+L C A+ + E
Sbjct: 72 ADKDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEK 131
Query: 380 WLAHLAARPQVNLRSVGRKRFAHLSEN-LDEIHVDANIPWGEDTLFTLEFRAEDSGKYAV 438
W H+A PQVN+ SV RKR+AHLS DEI VD ++PWG D+L TL F+ +Y+V
Sbjct: 132 WSVHIAMHPQVNIYSVTRKRYAHLSARPADEIAVDRDVPWGVDSLITLAFQ---DQRYSV 188
Query: 439 HTCNNKYLSREGKLVDTCNANCLFSLEYHAGEFCFLYLFIWLRPIRSPATGQIALRDNSG 498
T ++++L +G+LV ++LE+ + G++A RD G
Sbjct: 189 QTADHRFLRHDGRLVARPEPATGYTLEFRS--------------------GKVAFRDCEG 228
Query: 499 AYLSPIGSKAILK-TRSNTVTKDELFTLEDSLPQASFIAALNSKYVSVKQ---------- 547
YL+P G LK ++ V KDELF LE S Q AA N + VS +Q
Sbjct: 229 RYLAPSGPSGTLKAGKATKVGKDELFALEQSCAQVVLQAA-NERNVSTRQGMDLSANQDE 287
Query: 548 ---------------GQIALRDNSGAYLSPIGSKAILKTRSNTVTKDELFTLEDSLPQAS 592
+ A R ++G Y + + + T S + F +E + +
Sbjct: 288 ETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGVQSTAS-SKNASCYFDIEWRDRRIT 346
Query: 593 FIAALNSKYVSVK 605
A+ N K+V+ K
Sbjct: 347 LRAS-NGKFVTSK 358
Score = 179 bits (455), Expect = 7e-50
Identities = 118/557 (21%), Positives = 195/557 (35%), Gaps = 139/557 (24%)
Query: 29 WTIGLINAQFKYLTAETFGFKINANGASLKKKQFKYLTAETFGFKINANGASLKKKQDGV 88
GLIN KYLTAE FGFK+NA+ +SLKKKQ +
Sbjct: 12 IQFGLINCGNKYLTAEAFGFKVNASASSLKKKQ--------------------------I 45
Query: 89 WILEPANG-GDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKN 147
W LE + +V LRSHLG+YLA D GNVTCE + P F I D+G+W+ ++
Sbjct: 46 WTLEQPPDEAGSAAVCLRSHLGRYLAADKDGNVTCEREVPGPDCRFLIVAHDDGRWSLQS 105
Query: 148 KTRGYFLGASSDKLICTAKIPANPEYWLAHLAARPQLRSCGSPPCASIGLPSSRGLPCRY 207
+ + G + D+L C A+ + E W H+A PQ + + S +
Sbjct: 106 EAHRRYFGGTEDRLSCFAQTVSPAEKWSVHIAMHPQ-----------VNIYSVTRKRYAH 154
Query: 208 ISSSPSTK-AVHKPPPLLKRSVFPLIMNIMNGT------NGHHENGNGELNGVGFSSKGV 260
+S+ P+ + AV + P S+ L + + +G L +
Sbjct: 155 LSARPADEIAVDRDVPWGVDSLITLA--FQDQRYSVQTADHRFLRHDGRL----VARPEP 208
Query: 261 WT----------IGLINAQFKYLTAE-TFGFKINANGASLKKKQVWILEPANGGDTLSVY 309
T + + + +YL G + K +++ LE + V
Sbjct: 209 ATGYTLEFRSGKVAFRDCEGRYLAPSGPSGTLKAGKATKVGKDELFALEQSCA----QVV 264
Query: 310 LRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHV-SDEGKWAFKNKTRGYFLGASSDKLI 368
L++ + ++ +++ DE+ FQ+ + D K AF+ T Y+ ++ +
Sbjct: 265 LQAANERNVSTRQGMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGVQ 324
Query: 369 CTAKIPANPEYW----------------------------------------LAHLAARP 388
TA Y+ L L RP
Sbjct: 325 STASSKNASCYFDIEWRDRRITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLINRP 384
Query: 389 QVNLRSVGRKRFAHLSENLDEIHVDANIPWGEDTLFTLEFRAEDSGKYAVHTCNNKYLS- 447
+ R + +DAN +F LEF G Y + KY +
Sbjct: 385 IIVFRG----EHGFIGCRKVTGTLDAN--RSSYDVFQLEFN---DGAYNIKDSTGKYWTV 435
Query: 448 -REGKLVDTCNANCLFSLEYHAGEFCFLYLFIWLRPIRSPATGQIALRDNSGAYLSPIGS 506
+ + + + F E+ ++A++ G YL
Sbjct: 436 GSDSAVTSSGDTPVDFFFEFCDY-------------------NKVAIKVG-GRYLKG-DH 474
Query: 507 KAILKTRSNTVTKDELF 523
+LK + TV L+
Sbjct: 475 AGVLKASAETVDPASLW 491
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.3 bits (158), Expect = 4e-11
Identities = 91/610 (14%), Positives = 163/610 (26%), Gaps = 194/610 (31%)
Query: 97 GDTLSVYLRS---HLGKYLAVDSFGNV--TCEADE--KEPGSLFQIHVSDEGKWAFKNK- 148
D LSV+ + + D ++ E D ++ W +K
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL---FWTLLSKQ 75
Query: 149 TRGY--FLGASSDKLICTAKIPANPEY-WLAH-LAARPQLRSCGSPPCASIGLPSSRGLP 204
F+ + L Y +L + + S +
Sbjct: 76 EEMVQKFVE---EVL--------RINYKFLMSPIKTEQRQPS---------------MMT 109
Query: 205 CRYISSSPSTKAVHKPPPLLKRSV--FPLIMNIMNGTNGHHENGNGELNGVGFSSKGV-- 260
YI + + K +V + + N ++GV S K
Sbjct: 110 RMYIEQR--DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 261 ------------------W-TIGLINAQFKYLTA-ETFGFKINANGASLKKKQVWILEPA 300
W + N+ L + ++I+ N S I
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 301 NGG-DTLSVYLRSHLGK--YL---------AVDSFGNVTCE----------ADEKEPGSL 338
+ L L+S + L A ++F N++C+ D +
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATT 286
Query: 339 FQIHVSDEGKWAF-KNKTRGYF---LGASSDKL-------------ICTAKI---PANPE 378
I D ++ + L L I I A +
Sbjct: 287 THI-SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 379 YWLAHLAARPQVNLRSVG---------RKRFAHLSENLDEIHVDANIP-------WGE-- 420
W H+ + RK F LS A+IP W +
Sbjct: 346 NWK-HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPP---SAHIPTILLSLIWFDVI 400
Query: 421 --------DTLFT-------------------LEFRAEDSGKYAVH-TCNNKYLSREGKL 452
+ L LE + + +YA+H + + Y +
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 453 VDTCNANCL----FS-LEYH---------AGEFCFLYL-FIWL-RPIRSPATGQIALRDN 496
D L +S + +H F ++L F +L + IR +T A
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA---- 516
Query: 497 SGAYLSPIGSKAILKTRSNTVTKDE------LFTLEDSLPQASFIAALNSKYVSVKQGQI 550
SG+ L+ + LK + ++ + + D LP+ + SKY + +I
Sbjct: 517 SGSILNTLQQ---LKFYKPYICDNDPKYERLVNAILDFLPKIEEN-LICSKYTDLL--RI 570
Query: 551 ALRDNSGAYL 560
AL A
Sbjct: 571 ALMAEDEAIF 580
Score = 48.7 bits (115), Expect = 6e-06
Identities = 61/435 (14%), Positives = 113/435 (25%), Gaps = 149/435 (34%)
Query: 201 RGLPCRYISSSPS---TKA-----VHKPPPLLK-RSVFPLIMNIMNGTNGHHENGNGELN 251
C+ + P +K + + +F +++ + L
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS--KQEEMVQKFVEEVLR 88
Query: 252 GVGFSSKGVWTIGLINAQFKYLTAETFGF-----KINANGASLKKKQVWILEPANGGDTL 306
+ + + + I + + + T + ++ + K V L+P
Sbjct: 89 -INYK----FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK---- 139
Query: 307 SVYLRSHL-----GKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLG 361
LR L K + +D GS GK
Sbjct: 140 ---LRQALLELRPAKNVLIDGVL-----------GS---------GKTWVALDV------ 170
Query: 362 ASSDKLICTAKIPANPEYWLAHLAARPQVNLRSVGRKRFAH-LSENLDEI--HVDANIPW 418
S K+ C +WL ++ + E L ++ +D N
Sbjct: 171 CLSYKVQCK---MDFKIFWL------------NLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 419 GEDTLFTLEFRAEDSGKYAVHTCNNKYLSREGKLVDTCNANCLFSLEYHAGEFCFLYLFI 478
D ++ R L R L NCL +
Sbjct: 216 RSDHSSNIKLRIHSI---------QAELRR--LLKSKPYENCL----------------L 248
Query: 479 WLRPIRSPATGQIALRDNSGAYLSPIGSKAILKTRSNTVTKDEL---------------- 522
L +++ + + K +L TR VT D L
Sbjct: 249 VLLNVQNAKA--WNAFN--------LSCKILLTTRFKQVT-DFLSAATTTHISLDHHSMT 297
Query: 523 FTLEDSLPQASFIAALNSKYVSVKQGQIALRDNSGA--YLSPIGSKAILKTRSNT----- 575
T ++ +L KY+ + + + LS I ++ T
Sbjct: 298 LTPDEVK-------SLLLKYLDCRPQDLPREVLTTNPRRLSIIA--ESIRDGLATWDNWK 348
Query: 576 -VTKDELFT-LEDSL 588
V D+L T +E SL
Sbjct: 349 HVNCDKLTTIIESSL 363
>2yug_A Protein FRG1; spliceosome, facioscapulohumeral muscular dystrophy,
FSHD1, beta-trefoil, structural genomics, NPPSFA; NMR
{Mus musculus}
Length = 155
Score = 52.0 bits (124), Expect = 4e-08
Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 7/114 (6%)
Query: 56 SLKKKQFKYLTAETFG-FKINANGASLKKKQDG--VWILEPANGGDTLSVYLRSHLGKYL 112
+++ + Y+ A G F + A + + + + + L+S GKYL
Sbjct: 28 AIEMDKGAYIHALDNGLFTLGAPHREVDEGPSPPEQFTAVKLSDS---RIALKSGYGKYL 84
Query: 113 AVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAK 166
++S G V +D P ++ D GK A + + + K
Sbjct: 85 GINSDGLVVGRSDAIGPREQWEPVFQD-GKMALLASNSCFIRCNEAGDIEAKNK 137
Score = 50.8 bits (121), Expect = 1e-07
Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 9/116 (7%)
Query: 262 TIGLINAQFKYLTAE-----TFGFKINANGASLKKKQVWILEPANGGDTLSVYLRSHLGK 316
TI + + Y+ A T G + + + + L+S GK
Sbjct: 26 TIAIEMDKGAYIHALDNGLFTLGAPHREVDEGPSPPEQFTAVKLSDS---RIALKSGYGK 82
Query: 317 YLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAK 372
YL ++S G V +D P ++ D GK A + + + K
Sbjct: 83 YLGINSDGLVVGRSDAIGPREQWEPVFQD-GKMALLASNSCFIRCNEAGDIEAKNK 137
Score = 36.9 bits (85), Expect = 0.006
Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 24/131 (18%)
Query: 488 TGQIALRDNSGAYLSPIGS-----KAILKTRSNTVTKDELFTLEDSLPQASFIAALNSKY 542
+G IA+ + GAY+ + + A + + E FT
Sbjct: 24 SGTIAIEMDKGAYIHALDNGLFTLGAPHREVDEGPSPPEQFTAVK--------------- 68
Query: 543 VSVKQGQIALRDNSGAYLSPIGSKAILKTRSNTVTKDELFTLEDSLPQASFIAALNSKYV 602
+ +IAL+ G YL I S ++ RS+ + E + + + +A+ NS ++
Sbjct: 69 --LSDSRIALKSGYGKYLG-INSDGLVVGRSDAIGPREQWEPVFQDGKMALLAS-NSCFI 124
Query: 603 SVKQAALAFAK 613
+A AK
Sbjct: 125 RCNEAGDIEAK 135
Score = 36.6 bits (84), Expect = 0.009
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 87 GVWILEPANGGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKE------PGSLFQIHVSDE 140
G+W G + ++ + G Y+ G T A +E P F +
Sbjct: 12 GIWWTVSNFGEISGTIAIEMDKGAYIHALDNGLFTLGAPHREVDEGPSPPEQFTAVKLSD 71
Query: 141 GKWAFKNKTRGYFLGASSD-KLICTAKIPANPEYW 174
+ A K+ G +LG +SD ++ + E W
Sbjct: 72 SRIALKSGY-GKYLGINSDGLVVGRSDAIGPREQW 105
Score = 35.8 bits (82), Expect = 0.014
Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 12/132 (9%)
Query: 307 SVYLRSHLGKYLAVDSFGNVTCEADEKE------PGSLFQIHVSDEGKWAFKNKTRGYFL 360
++ + G Y+ G T A +E P F + + A K+ G +L
Sbjct: 26 TIAIEMDKGAYIHALDNGLFTLGAPHREVDEGPSPPEQFTAVKLSDSRIALKSGY-GKYL 84
Query: 361 GASSD-KLICTAKIPANPEYWLAHLAARPQVNLRSVGRKRFAHLSENLDEIHVDANIPWG 419
G +SD ++ + E W L S + + +++ + A G
Sbjct: 85 GINSDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAKNKTA----G 140
Query: 420 EDTLFTLEFRAE 431
E+ + + AE
Sbjct: 141 EEEMIKIRSCAE 152
Score = 32.3 bits (73), Expect = 0.23
Identities = 9/71 (12%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 271 KYLTAETFGFKINANGASLKKKQVWILEPANGGDTLSVYLRSHLGKYLAVDSFGNVTCEA 330
KYL + G + ++ ++ W +G + L + ++ + G++ +
Sbjct: 82 KYLGINSDG-LVVGRSDAIGPREQWEPVFQDG----KMALLASNSCFIRCNEAGDIEAKN 136
Query: 331 DEKEPGSLFQI 341
+ +I
Sbjct: 137 KTAGEEEMIKI 147
Score = 30.4 bits (68), Expect = 0.86
Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 8/95 (8%)
Query: 42 TAETFGFKINANGA-SLKKKQFKYLTAETFGFKINANGASLKKKQDGVWILEPANGGDTL 100
E F ++ +LK KYL + G + + A ++Q W +G
Sbjct: 60 PPEQFTAVKLSDSRIALKSGYGKYLGINSDGLVVGRSDAIGPREQ---WEPVFQDG---- 112
Query: 101 SVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQI 135
+ L + ++ + G++ + + +I
Sbjct: 113 KMALLASNSCFIRCNEAGDIEAKNKTAGEEEMIKI 147
Score = 27.7 bits (61), Expect = 6.5
Identities = 14/120 (11%), Positives = 41/120 (34%), Gaps = 18/120 (15%)
Query: 407 LDEIHVDANIPWGEDTLFTLEFRAEDSGKYAVHTCNNKYLSREGKLVDTCNANCLFSLEY 466
L H + + FT ++ + A+ + KYL + ++ + E
Sbjct: 47 LGAPHREVDEGPSPPEQFTAVKLSD--SRIALKSGYGKYLGINSDGLVVGRSDAIGPREQ 104
Query: 467 HAGEFCFLYLFIWLRPIRSPATGQIALRDNSGAYLSPIGSKAILKTRSNTVTKDELFTLE 526
+ + G++AL ++ ++ ++ ++ T ++E+ +
Sbjct: 105 ----------WEPVF-----QDGKMALLASNSCFIR-CNEAGDIEAKNKTAGEEEMIKIR 148
>3q7x_A De novo designed beta-trefoil architecture with S primary
structure; beta-terfoil, de novo protein; 1.40A
{Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A
3o4a_A* 3o49_A
Length = 132
Score = 44.6 bits (105), Expect = 9e-06
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Query: 308 VYLRS-HLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSD- 365
V LRS G++L ++ G V D +PG FQI G+ ++ G FL + D
Sbjct: 8 VLLRSTETGQFLRINPDGTVDGTRDRSDPGIQFQISPEGNGEVLLRSTETGQFLRINPDG 67
Query: 366 KLICTAKIPANPEYWLAHLAARPQVNLRSVGRKRFAHLSEN 406
+ T + +V LRS +F ++ +
Sbjct: 68 TVDGTRDRSDPGIQFQISPEGNGEVLLRSTETGQFLRINPD 108
Score = 43.1 bits (101), Expect = 3e-05
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 271 KYLTAETFGFKINANGASLKKKQVWILEPANGGDTLSVYLRS-HLGKYLAVDSFGNVTCE 329
++L G ++ + + P G V LRS G++L ++ G V
Sbjct: 17 QFLRINPDG-TVDGTRDRSDPGIQFQISPEGNG---EVLLRSTETGQFLRINPDGTVDGT 72
Query: 330 ADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSD 365
D +PG FQI G+ ++ G FL + D
Sbjct: 73 RDRSDPGIQFQISPEGNGEVLLRSTETGQFLRINPD 108
Score = 41.2 bits (96), Expect = 1e-04
Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Query: 63 KYLTAETFGFKINANGASLKKKQDGVWILEPANGGDTLSVYLRSHLGKYLAVDSFGNVTC 122
++L G ++ + + D + + G+ + + G++L ++ G V
Sbjct: 17 QFLRINPDG-TVDGT----RDRSDPGIQFQISPEGNGEVLLRSTETGQFLRINPDGTVDG 71
Query: 123 EADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSD 159
D +PG FQI G+ ++ G FL + D
Sbjct: 72 TRDRSDPGIQFQISPEGNGEVLLRSTETGQFLRINPD 108
Score = 40.4 bits (94), Expect = 2e-04
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 102 VYLRS-HLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDK 160
V LRS G++L ++ G V D +PG FQI G+ ++ G FL + D
Sbjct: 8 VLLRSTETGQFLRINPDGTVDGTRDRSDPGIQFQISPEGNGEVLLRSTETGQFLRINPDG 67
Query: 161 LICTAKIPANPEYWL 175
+ + ++P
Sbjct: 68 TVDGTRDRSDPGIQF 82
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 1e-04
Identities = 80/414 (19%), Positives = 117/414 (28%), Gaps = 162/414 (39%)
Query: 89 WILEPANGGDTLSVYLRS-----------HLGKYLAVDSFGNVTCEADEKEPGSLFQIHV 137
W+ P+N D YL S L Y+ VT + PG L
Sbjct: 218 WLENPSNTPDKD--YLLSIPISCPLIGVIQLAHYV-------VTAKLLGFTPGELRSY-- 266
Query: 138 SDEGKWAFKNKTRGYFLGASSDKLICTAKIPANPEYWLA-HLAARPQLRSCGSPPCASIG 196
+G G S + TA A + W + ++ R + IG
Sbjct: 267 -----------LKG-ATGHSQG--LVTAVAIAETDSWESFFVSVRKAITV-----LFFIG 307
Query: 197 LPSSRGLPCRYISSSPSTKAVH----KPPPLLKRSV----FPLIMNIMNGTNGHHENGNG 248
+ P + S ++ P P+L S+ + + +N TN H
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPML--SISNLTQEQVQDYVNKTNSH------ 359
Query: 249 ELNGVGFSSKGVWTIGLINAQFKYLTAETFGFKINANGASLKKKQVWILEPANGGDTLSV 308
+ K V I L+N A+ ++ G S+
Sbjct: 360 -----LPAGKQV-EISLVNG------AKNL-----------------VV----SGPPQSL 386
Query: 309 Y-LRSHLGKYLAVDSFGNVTCEADEKEPGSLFQ--IHVSDEGKWAFKNKTRGYFL--GA- 362
Y L L K K P L Q I S+ K F N+ FL +
Sbjct: 387 YGLNLTLRK---------------AKAPSGLDQSRIPFSER-KLKFSNR----FLPVASP 426
Query: 363 -------SSDKLICTAKIPANPEYWLAHLAARPQV-------NLRSVGRKRFAHLSENLD 408
+ LI + N + + P V +LR LS ++
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVSFNAKDIQI-P-VYDTFDGSDLRV--------LSGSIS 476
Query: 409 EIHVDANI--P--WGEDTLFT----LEFRAEDSGKYAVHTCNNKYLSREGKLVD 454
E VD I P W T F L+F G S G L
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKATHILDF---GPGG----------ASGLGVLTH 517
Score = 37.7 bits (87), Expect = 0.013
Identities = 82/523 (15%), Positives = 148/523 (28%), Gaps = 167/523 (31%)
Query: 149 TRGYFLGASSDKLICTAKIPANPEYWLAHLAARPQLRSC--GSPPCASIGL-----PSSR 201
TR L S L +P + A QL+ P + G P++
Sbjct: 6 TRPLTL--SHGSLEHVLLVPTA-----SFFIAS-QLQEQFNKILPEPTEGFAADDEPTTP 57
Query: 202 -GLPCR---YISSSPSTKAVHKPPPLLKRSVFPLIMNIMNGTNGHHENGNGELNGVGFSS 257
L + Y+SS V + +L + + G + H +
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH---------ALAAKL 108
Query: 258 KGVWTIGLINAQF---KYLTAETF-GFKINANGASLKKKQVWILEPANGGDTLSVYLRSH 313
L+ + Y+TA + S + G+ +
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA------LFRAVGEGNA-QLV---- 157
Query: 314 LGKYLAVDSF---GNVTCEADE-KEPGSLFQI---HVSDEGKWAFKNKTRGYFLGASSDK 366
A+ F GN +E ++ L+Q V D + S++
Sbjct: 158 -----AI--FGGQGNTDDYFEELRD---LYQTYHVLVGD-------------LIKFSAET 194
Query: 367 LICTAKIPANPEY----------WLAHLAARPQVN-LRSVGRKRFAHLSENLDEIHVDAN 415
L + + E WL + + P + L S +S L
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS------IPISCPL-------- 240
Query: 416 IPWGEDTLFTLEFRAEDSGKYAVHTCNNKYLSREGKLVD------TCNAN----CLFSLE 465
I + L Y V T + G+L + +
Sbjct: 241 I-----GVIQL-------AHYVV-TAKLLGFTP-GELRSYLKGATGHSQGLVTAVAIAET 286
Query: 466 ------YHAGEFCFLYLFIW--LR-----PIRS--PATGQIALRDNSGAYLSPIGSKAIL 510
+ + LF + +R P S P+ + +L +N G SP+ L
Sbjct: 287 DSWESFFVSVRKAITVLF-FIGVRCYEAYPNTSLPPSILEDSLENNEGV-PSPM-----L 339
Query: 511 KTRSNTVTKDELFTLEDSLPQASFIAALNSKYVSVKQGQIAL---RDN---SGAYLSPIG 564
+ +T++++ ++ NS + KQ +I+L N SG S G
Sbjct: 340 SISN--LTQEQVQ---------DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 565 SKAILKTRSNTVTKDE---LFTLEDSLPQASF--IAA-LNSKY 601
L+ D+ F+ F +A+ +S
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL 431
Score = 33.1 bits (75), Expect = 0.30
Identities = 82/509 (16%), Positives = 135/509 (26%), Gaps = 189/509 (37%)
Query: 130 GSL-FQIHVSDEGKWAFKNKTRGYF---LGASSDKLICTAKIPANPEYW---LAHLAARP 182
GSL + V + ++ + F L ++ + E L ++++
Sbjct: 14 GSLEHVLLVP-TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV 72
Query: 183 QLRSCGS-----------------------------PPCASIGLPSSRGLPCR-Y----- 207
+ G L ++ L + Y
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL-IKNYITARI 131
Query: 208 ISSSPSTKAVHKPPPLLKRSV----FPLIMNIMNGTNGHHENGNG-----ELNGVGFSSK 258
++ P K L R+V L+ I G GN EL + + +
Sbjct: 132 MAKRPFDKK---SNSALFRAVGEGNAQLVA-IFGG------QGNTDDYFEELRDL-YQTY 180
Query: 259 GVWTIGLINAQFKYL----TAETFGFKINANGASLKKKQVWILEPANGGDTLSVYLRS-- 312
V LI + L K+ G ++ + W+ P+N D YL S
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE---WLENPSNTPDKD--YLLSIP 235
Query: 313 ---------HLGKYLAVDSFGNVTCEADEKEPGSLFQI------HVSD---------EGK 348
L Y+ VT + PG L H
Sbjct: 236 ISCPLIGVIQLAHYV-------VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 349 WA--FKNKTRG----YFLGASSDKLICTAKIPAN------------PEYWLA-------- 382
W F + + +F+G + +P + P L+
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 383 ----------HLAARPQVNLRSV--GRKRF---------AHLSENLDEIHVDAN-----I 416
HL A QV + S+ G K L+ L + + I
Sbjct: 349 VQDYVNKTNSHLPAGKQVEI-SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 417 PWGEDTL-FTLEFRAEDSGKYAV----HTCNNKYLSREGKLV--DTCNANCLFSLEYHAG 469
P+ E L F+ F V H+ L L+ D N F+ +
Sbjct: 408 PFSERKLKFSNRF-------LPVASPFHS---HLLVPASDLINKDLVKNNVSFNAK---- 453
Query: 470 EFCFLYLFIWLRPIRSPATGQIALRDNSG 498
+ I P+ G LR SG
Sbjct: 454 -----DIQI---PVYDTFDGS-DLRVLSG 473
Score = 31.6 bits (71), Expect = 1.1
Identities = 50/277 (18%), Positives = 81/277 (29%), Gaps = 77/277 (27%)
Query: 66 TAETFGFKINANGASLKKKQDGVWILEPANGGDTLSVYLRSHLGKYLAVDSFGNVTCEAD 125
+T+GF I D V N L+++ GK + +++ + E
Sbjct: 1653 FKDTYGFSI----------LDIV-----INNPVNLTIHFGGEKGKRIR-ENYSAMIFETI 1696
Query: 126 EKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIPAN--PEYWLAHLAARPQ 183
G L + E + Y + L T P L AA
Sbjct: 1697 VD--GKLKTEKIFKE----INEHSTSYTFRSEKGLLSATQ----FTQPALTLMEKAAFED 1746
Query: 184 LRSCGSPP----CA--SIG----LPSSRGLPCRYISSSPSTKAVHKPPPLLKRSVFPLIM 233
L+S G P A S+G L S +S + V R
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLAD----VMSIESLVEVVFY------R------- 1789
Query: 234 NIMNGTNGHHENGNGELNGVGFSSKGVWTIGLINAQFKYLTAETFGFKINANGASLKKKQ 293
G EL + + G + A F + E + + + K+
Sbjct: 1790 ----GMTMQVAVPRDELGRSNYGMIAI-NPGRVAASF---SQEALQYVV----ERVGKRT 1837
Query: 294 VWILEPAN----GGDTLSVYLRSHLGKYLAVDSFGNV 326
W++E N Y+ + G A+D+ NV
Sbjct: 1838 GWLVEIVNYNVEN----QQYVAA--GDLRALDTVTNV 1868
Score = 28.9 bits (64), Expect = 6.0
Identities = 47/269 (17%), Positives = 76/269 (28%), Gaps = 94/269 (34%)
Query: 241 GHHENGNG-ELNGVGFSSKGVWTIGLINAQFKYLTAETFGFKINANGASLKKKQVWILEP 299
G E G G +L +++ VW A + +T+GF I I+
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWN----RAD-NHFK-DTYGFSILD-----------IVI- 1666
Query: 300 ANGGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYF 359
N L+++ GK + +++ + E G L + E + Y
Sbjct: 1667 -NNPVNLTIHFGGEKGKRIR-ENYSAMIFETIVD--GKLKTEKIFKE----INEHSTSYT 1718
Query: 360 LGASSDKLICTA---------------------KIPANP--------EYW-LAHLA---- 385
+ L T IPA+ EY LA LA
Sbjct: 1719 FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMS 1778
Query: 386 ---ARPQVNLR-----------SVGRKRFAHLSENLDEIHVDANIPWGEDTLFTLEFRAE 431
V R +GR + ++ N + F+ E
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS----------FSQE---- 1824
Query: 432 DSGKYAVHTCNNKYLSREGKLVDTCNANC 460
A+ + R G LV+ N N
Sbjct: 1825 -----ALQYVVERVGKRTGWLVEIVNYNV 1848
>3p6j_A De novo designed beta-trefoil architecture with S primary
structure; de novo protein; 1.35A {Synthetic}
Length = 142
Score = 41.2 bits (96), Expect = 2e-04
Identities = 18/92 (19%), Positives = 35/92 (38%)
Query: 83 KKQDGVWILEPANGGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGK 142
KK D + + G+ + + G+YL ++ G V D + FQI G+
Sbjct: 15 KKGDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTHIQFQISPEGNGE 74
Query: 143 WAFKNKTRGYFLGASSDKLICTAKIPANPEYW 174
K+ G +L + D + + ++
Sbjct: 75 VLLKSTETGQYLRINPDGTVDGTRDRSDTHIQ 106
Score = 40.8 bits (95), Expect = 2e-04
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 2/98 (2%)
Query: 283 NANGASLKKKQVWILEPANGGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIH 342
N + + P G+ L + G+YL ++ G V D + FQI
Sbjct: 11 PGNYKKGDTHIQFQISPEGNGEVLLKSTET--GQYLRINPDGTVDGTRDRSDTHIQFQIS 68
Query: 343 VSDEGKWAFKNKTRGYFLGASSDKLICTAKIPANPEYW 380
G+ K+ G +L + D + + ++
Sbjct: 69 PEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTHIQ 106
>1hcd_A Hisactophilin; actin binding; NMR {Dictyostelium discoideum} SCOP:
b.42.5.2 PDB: 1hce_A
Length = 118
Score = 40.5 bits (94), Expect = 2e-04
Identities = 25/118 (21%), Positives = 40/118 (33%), Gaps = 22/118 (18%)
Query: 489 GQIALRDNSGAYLSPIGSKAILKTRSNTVTKDELFTLEDSLPQASFIAALNSKYVSVKQG 548
G A + + G +LS G +KT F +E G
Sbjct: 2 GNRAFKSHHGHFLSAEGEA--VKTHHGHHDHHTHFHVE------------------NHGG 41
Query: 549 QIALRDNSGAYLSPIGSKAILKTRSNTVTKDELFTLEDSLPQASFIAALNSKYVSVKQ 606
++AL+ + G YLS K + + + LF LE + S + Y+S
Sbjct: 42 KVALKTHCGKYLSIGDHKQVYLSH-HLHGDHSLFHLEHHGGKVSIKGH-HHHYISADH 97
Score = 36.6 bits (84), Expect = 0.005
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 13/97 (13%)
Query: 44 ETFGFKINANGASLKKKQFKYLTAETFGFKINANGASLKKKQDGVW---ILEPANGGDTL 100
F + + +LK KYL+ L G LE G
Sbjct: 32 THFHVENHGGKVALKTHCGKYLSIGDHK------QVYLSHHLHGDHSLFHLEHHGGK--- 82
Query: 101 SVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHV 137
V ++ H Y++ D G+V+ + + +I +
Sbjct: 83 -VSIKGHHHHYISADHHGHVSTKEHHDHDTTFEEIII 118
Score = 33.5 bits (76), Expect = 0.049
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 307 SVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDK 366
V L++H GKYL++ V SLF + GK + K +++ A
Sbjct: 42 KVALKTHCGKYLSIGDHKQVYLSHHLHGDHSLFHLEHHG-GKVSIKGHH-HHYISADHHG 99
Query: 367 LICTAKIPANPEYW 380
+ T + + +
Sbjct: 100 HVSTKEHHDHDTTF 113
Score = 32.8 bits (74), Expect = 0.089
Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 271 KYLTAETFGFKINANGASLKKKQVWILEPANGGDTLSVYLRSHLGKYLAVDSFGNVTCEA 330
KYL+ ++ + ++ LE G V ++ H Y++ D G+V+ +
Sbjct: 51 KYLSIGDHK-QVYLSHHLHGDHSLFHLEHHGGK----VSIKGHHHHYISADHHGHVSTKE 105
Query: 331 DEKEPGSLFQIHV 343
+ +I +
Sbjct: 106 HHDHDTTFEEIII 118
>3p6i_A De novo designed beta-trefoil architecture with S primary
structure; de novo protein; HET: SO4; 1.32A {Synthetic}
PDB: 3ogf_A
Length = 142
Score = 39.7 bits (92), Expect = 6e-04
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 91 LEPANGGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTR 150
+ P G+ L + G+YL ++ G V D + FQI G+ K+
Sbjct: 35 ISPEGNGEVLLKSTET--GQYLRINPDGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTET 92
Query: 151 GYFLGASSDKLICTAKIPANPEYW 174
G +L + D + + ++
Sbjct: 93 GQYLRINPDGTVDGTRDRSDTHIQ 116
Score = 39.7 bits (92), Expect = 6e-04
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 297 LEPANGGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTR 356
+ P G+ L + G+YL ++ G V D + FQI G+ K+
Sbjct: 35 ISPEGNGEVLLKSTET--GQYLRINPDGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTET 92
Query: 357 GYFLGASSDKLICTAKIPANPEYW 380
G +L + D + + ++
Sbjct: 93 GQYLRINPDGTVDGTRDRSDTHIQ 116
>3snv_A Symfoil-4T/permutation #1 synthetic protein; beta-trefoil, de novo
protein; 2.20A {Homo sapiens}
Length = 143
Score = 38.0 bits (88), Expect = 0.002
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Query: 315 GKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSD-KLICTAKI 373
G+YL ++ G V D + FQI G+ K+ G +L + D + T
Sbjct: 19 GQYLRINPDGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDR 78
Query: 374 PANPEYWLAHLAARPQVNLRSVGRKRFAHLSEN 406
+ +V L+S ++ ++ +
Sbjct: 79 SDTHIQFQISPEGNGEVLLKSTETGQYLRINPD 111
Score = 37.7 bits (87), Expect = 0.003
Identities = 14/66 (21%), Positives = 26/66 (39%)
Query: 109 GKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIP 168
G+YL ++ G V D + FQI G+ K+ G +L + D + +
Sbjct: 19 GQYLRINPDGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDR 78
Query: 169 ANPEYW 174
++
Sbjct: 79 SDTHIQ 84
>1q1u_A FGF-12, fibrobast growth factor homologous factor 1, FGF12B; human,
hormone/growth factor complex; 1.70A {Homo sapiens}
SCOP: b.42.1.1
Length = 144
Score = 33.9 bits (77), Expect = 0.051
Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 92 EPANGGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRG 151
EP G ++ + G +L + G + DE +LF + A +
Sbjct: 5 EPQLKGIVTRLFSQQ--GYFLQMHPDGTIDGTKDENSDYTLFNLIPVGLRVVAIQGVKAS 62
Query: 152 YFLGASSDKLICTAKIPAN 170
++ + + + ++ +
Sbjct: 63 LYVAMNGEGYLYSSDVFTP 81
Score = 33.9 bits (77), Expect = 0.051
Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 298 EPANGGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRG 357
EP G ++ + G +L + G + DE +LF + A +
Sbjct: 5 EPQLKGIVTRLFSQQ--GYFLQMHPDGTIDGTKDENSDYTLFNLIPVGLRVVAIQGVKAS 62
Query: 358 YFLGASSDKLICTAKIPAN 376
++ + + + ++ +
Sbjct: 63 LYVAMNGEGYLYSSDVFTP 81
>1bfg_A Basic fibroblast growth factor; 1.60A {Homo sapiens} SCOP: b.42.1.1
PDB: 1iil_A 1ii4_A 1bas_A 1bla_A 1bld_A 1bfb_A* 1bfc_A*
4fgf_A 1fga_A 2fgf_A 1ev2_A 1cvs_A 1fq9_A* 1bff_A 2bfh_A
Length = 146
Score = 32.4 bits (73), Expect = 0.18
Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 5/130 (3%)
Query: 91 LEPANGGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTR 150
P + D +Y ++ G +L + G V ++ +P Q+ + G + K +
Sbjct: 12 FPPGHFKDPKRLYCKNG-GFFLRIHPDGRVDGVREKSDPHIKLQLQAEERGVVSIKGVSA 70
Query: 151 GYFLGASSDKLICTAKIPANPEYWLAHLAARP--QLRSCGSPPCASIGLPSSRGLPCRYI 208
+L D + +K + ++ L + RS + L G
Sbjct: 71 NRYLAMKEDGRLLASKSVTDECFFFERLESNNYNTYRSRKYTSWY-VAL-KRTGQYKLGS 128
Query: 209 SSSPSTKAVH 218
+ P KA+
Sbjct: 129 KTGPGQKAIL 138
Score = 29.7 bits (66), Expect = 1.4
Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 297 LEPANGGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTR 356
P + D +Y ++ G +L + G V ++ +P Q+ + G + K +
Sbjct: 12 FPPGHFKDPKRLYCKNG-GFFLRIHPDGRVDGVREKSDPHIKLQLQAEERGVVSIKGVSA 70
Query: 357 GYFLGASSDKLICTAKIPANPEYW 380
+L D + +K + ++
Sbjct: 71 NRYLAMKEDGRLLASKSVTDECFF 94
>3hbw_A Fibroblast growth factor 13; beta-trefoil fold, alternative
splicing, polymorphism, hormone; 1.90A {Homo sapiens}
Length = 193
Score = 31.7 bits (71), Expect = 0.42
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 92 EPANGGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRG 151
EP G +Y R G +L + + G + DE +LF + A +
Sbjct: 11 EPQLKGIVTKLYSRQ--GYHLQLQADGTIDGTKDEDSTYTLFNLIPVGLRVVAIQGVQTK 68
Query: 152 YFLGASSDKLICTAKIPAN 170
+L +S+ + T+++
Sbjct: 69 LYLAMNSEGYLYTSELFTP 87
Score = 31.7 bits (71), Expect = 0.42
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 298 EPANGGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRG 357
EP G +Y R G +L + + G + DE +LF + A +
Sbjct: 11 EPQLKGIVTKLYSRQ--GYHLQLQADGTIDGTKDEDSTYTLFNLIPVGLRVVAIQGVQTK 68
Query: 358 YFLGASSDKLICTAKIPAN 376
+L +S+ + T+++
Sbjct: 69 LYLAMNSEGYLYTSELFTP 87
>3f1r_A FGF-20, fibroblast growth factor 20; beta-trefoil fold,
polymorphism, secreted, hormone; 2.50A {Homo sapiens}
Length = 211
Score = 31.7 bits (71), Expect = 0.42
Identities = 10/76 (13%), Positives = 24/76 (31%)
Query: 96 GGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLG 155
G L G +L + G+V + + + G + + G +LG
Sbjct: 61 HGILRRRQLYCRTGFHLQILPDGSVQGTRQDHSLFGILEFISVAVGLVSIRGVDSGLYLG 120
Query: 156 ASSDKLICTAKIPANP 171
+ + ++ +
Sbjct: 121 MNDKGELYGSEKLTSE 136
Score = 31.7 bits (71), Expect = 0.42
Identities = 10/76 (13%), Positives = 24/76 (31%)
Query: 302 GGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLG 361
G L G +L + G+V + + + G + + G +LG
Sbjct: 61 HGILRRRQLYCRTGFHLQILPDGSVQGTRQDHSLFGILEFISVAVGLVSIRGVDSGLYLG 120
Query: 362 ASSDKLICTAKIPANP 377
+ + ++ +
Sbjct: 121 MNDKGELYGSEKLTSE 136
>1r75_A Hypothetical protein; structural genomics, unknown function, PSI,
protein structur initiative; 1.86A {Leishmania major}
SCOP: b.134.1.1
Length = 141
Score = 31.2 bits (70), Expect = 0.49
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 117 FGNVTCEADEKEP---GSLFQIHVSDEGKWAFKNKTRGY 152
G T + + P L++I ++ +WAF N ++
Sbjct: 24 NGKPTVKGTKTYPMFSNILYRIADTEARRWAFYNDSKEL 62
Score = 31.2 bits (70), Expect = 0.49
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 323 FGNVTCEADEKEP---GSLFQIHVSDEGKWAFKNKTRGY 358
G T + + P L++I ++ +WAF N ++
Sbjct: 24 NGKPTVKGTKTYPMFSNILYRIADTEARRWAFYNDSKEL 62
>1rg8_A Heparin-binding growth factor 1; beta-trefoil, hormone/growth
factor complex; 1.10A {Homo sapiens} SCOP: b.42.1.1 PDB:
1jqz_A 3fjb_A 1jt3_A 1jt4_A 1jtc_A 3baq_A 3bah_A 3fja_A
3fj9_A 3fjk_A 3hom_A 3fjc_A 3ba5_A 3fjh_A 1jt5_A 1k5v_A
3fjj_A 1jy0_A 3bao_A 3fjf_A ...
Length = 146
Score = 30.8 bits (69), Expect = 0.56
Identities = 13/66 (19%), Positives = 25/66 (37%)
Query: 109 GKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIP 168
G +L + G V D + Q+ G+ K+ G +L +D L+ ++ P
Sbjct: 26 GHFLRILPDGTVDGTRDRSDQHIQLQLSAESVGEVYIKSTETGQYLAMDTDGLLYGSQTP 85
Query: 169 ANPEYW 174
+
Sbjct: 86 NEECLF 91
Score = 30.8 bits (69), Expect = 0.56
Identities = 13/66 (19%), Positives = 25/66 (37%)
Query: 315 GKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIP 374
G +L + G V D + Q+ G+ K+ G +L +D L+ ++ P
Sbjct: 26 GHFLRILPDGTVDGTRDRSDQHIQLQLSAESVGEVYIKSTETGQYLAMDTDGLLYGSQTP 85
Query: 375 ANPEYW 380
+
Sbjct: 86 NEECLF 91
>1ihk_A GLIA-activating factor; B-trefoil fold, hormone/growth factor
complex; 2.20A {Homo sapiens} SCOP: b.42.1.1 PDB:
1g82_A*
Length = 174
Score = 30.9 bits (69), Expect = 0.86
Identities = 9/76 (11%), Positives = 22/76 (28%)
Query: 96 GGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLG 155
G L G +L + G + + + + G + + G +LG
Sbjct: 24 KGILRRRQLYCRTGFHLEIFPNGTIQGTRKDHSRFGILEFISIAVGLVSIRGVDSGLYLG 83
Query: 156 ASSDKLICTAKIPANP 171
+ + ++
Sbjct: 84 MNEKGELYGSEKLTQE 99
Score = 30.9 bits (69), Expect = 0.86
Identities = 9/76 (11%), Positives = 22/76 (28%)
Query: 302 GGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLG 361
G L G +L + G + + + + G + + G +LG
Sbjct: 24 KGILRRRQLYCRTGFHLEIFPNGTIQGTRKDHSRFGILEFISIAVGLVSIRGVDSGLYLG 83
Query: 362 ASSDKLICTAKIPANP 377
+ + ++
Sbjct: 84 MNEKGELYGSEKLTQE 99
>1ijt_A FGF4, fibroblast growth factor 4; B-trefoil fold, hormone/growth
factor complex; 1.80A {Homo sapiens} SCOP: b.42.1.1
Length = 128
Score = 30.0 bits (67), Expect = 1.1
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Query: 103 YLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLI 162
Y +G +L G + A SL ++ + G + +F+ SS +
Sbjct: 9 YCNVGIGFHLQALPDGRIGG-AHADTRDSLLELSPVERGVVSIFGVASRFFVAMSSKGKL 67
Query: 163 CTAKIPANP 171
+ +
Sbjct: 68 YGSPFFTDE 76
Score = 30.0 bits (67), Expect = 1.1
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Query: 309 YLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLI 368
Y +G +L G + A SL ++ + G + +F+ SS +
Sbjct: 9 YCNVGIGFHLQALPDGRIGG-AHADTRDSLLELSPVERGVVSIFGVASRFFVAMSSKGKL 67
Query: 369 CTAKIPANP 377
+ +
Sbjct: 68 YGSPFFTDE 76
>2fe0_A SMP-1, small myristoylated protein 1; beta sheet, protein
transport, membrane protein; NMR {Leishmania major}
SCOP: b.134.1.1
Length = 136
Score = 29.6 bits (66), Expect = 1.3
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 117 FGNVTCEADEKEP------GSLFQIHVSDEGKWAFKNKTRGY 152
G T +E G LF+I + +WA+ N T Y
Sbjct: 21 NGRPTFVGEEVTKGFEKDNGLLFRIVNKKKKQWAYYNDTTQY 62
Score = 29.6 bits (66), Expect = 1.3
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 323 FGNVTCEADEKEP------GSLFQIHVSDEGKWAFKNKTRGY 358
G T +E G LF+I + +WA+ N T Y
Sbjct: 21 NGRPTFVGEEVTKGFEKDNGLLFRIVNKKKKQWAYYNDTTQY 62
>1qql_A Fibroblast growth factor 7/1 chimera; beta-trefoil, hormone/growth
factor complex; 2.30A {Rattus norvegicus} SCOP: b.42.1.1
PDB: 1qqk_A
Length = 140
Score = 29.2 bits (65), Expect = 1.9
Identities = 16/76 (21%), Positives = 27/76 (35%)
Query: 96 GGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLG 155
GGD L YL +D G V + + ++ +I G A K Y+L
Sbjct: 7 GGDIRVRRLFCRTQWYLRIDKRGKVKGTQEMRNSYNIMEIRTVAVGIVAIKGVESEYYLA 66
Query: 156 ASSDKLICTAKIPANP 171
+ + + + P
Sbjct: 67 MNKEGKLYAKQTPNEE 82
Score = 29.2 bits (65), Expect = 1.9
Identities = 16/76 (21%), Positives = 27/76 (35%)
Query: 302 GGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLG 361
GGD L YL +D G V + + ++ +I G A K Y+L
Sbjct: 7 GGDIRVRRLFCRTQWYLRIDKRGKVKGTQEMRNSYNIMEIRTVAVGIVAIKGVESEYYLA 66
Query: 362 ASSDKLICTAKIPANP 377
+ + + + P
Sbjct: 67 MNKEGKLYAKQTPNEE 82
>1nun_A Fibroblast growth factor-10; beta-trefoil fold, immunoglobulin-like
domain, hormone/growth factor/membrane protein complex;
HET: 15P; 2.90A {Homo sapiens} SCOP: b.42.1.1
Length = 145
Score = 28.8 bits (64), Expect = 2.5
Identities = 16/58 (27%), Positives = 24/58 (41%)
Query: 97 GDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFL 154
GD L S +L ++ G V+ E P S+ +I + G A K Y+L
Sbjct: 12 GDVRWRKLFSFTKYFLKIEKNGKVSGTKKENCPYSILEITSVEIGVVAVKAINSNYYL 69
Score = 28.8 bits (64), Expect = 2.5
Identities = 16/58 (27%), Positives = 24/58 (41%)
Query: 303 GDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFL 360
GD L S +L ++ G V+ E P S+ +I + G A K Y+L
Sbjct: 12 GDVRWRKLFSFTKYFLKIEKNGKVSGTKKENCPYSILEITSVEIGVVAVKAINSNYYL 69
>2qec_A Histone acetyltransferase HPA2 and related acetyltransferases;
NP_600742.1, acetyltransferase (GNAT) family; 1.90A
{Corynebacterium glutamicum atcc 13032}
Length = 204
Score = 29.2 bits (65), Expect = 3.0
Identities = 16/100 (16%), Positives = 27/100 (27%), Gaps = 2/100 (2%)
Query: 317 YLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIPAN 376
+A DS G + A P + + L P
Sbjct: 64 DVARDSEGEIVGVALWDRPDGNHSAKDQAAMLPRLVSIFGIKAAQVAWTDLSSARFHPKF 123
Query: 377 PEYWLAHLAARPQVNLRSVGRKRFAHLSENLDE--IHVDA 414
P ++L +A VG H + I+++A
Sbjct: 124 PHWYLYTVATSSSARGTGVGSALLNHGIARAGDEAIYLEA 163
>2vse_A MTX holotoxin, mosquitocidal toxin; ADP-ribosyltransferase, lectin,
ricin-B-like domain; 2.5A {Lysinibacillus sphaericus}
PDB: 2vsa_A
Length = 841
Score = 29.6 bits (65), Expect = 4.2
Identities = 14/96 (14%), Positives = 22/96 (22%), Gaps = 3/96 (3%)
Query: 232 IMNIMNGTNGHHENGNGELNG---VGFSSKGVWTIGLINAQFKYLTAETFGFKINANGAS 288
I N T + G N + ++ I F Y N +
Sbjct: 715 ITMNSNKTQAVIFDNIGINNQSWKLKYNDNKNAYQIHILDNFLYFQGGHNIVATMRNVTN 774
Query: 289 LKKKQVWILEPANGGDTLSVYLRSHLGKYLAVDSFG 324
+ W +E D + L V
Sbjct: 775 DDLRSYWYVEYNFNKDGFIIRNAFDTSYVLDVFQGN 810
>2p39_A Fibroblast growth factor 23; atypical beta-trefoil fold, signaling
protein; HET: SCR; 1.50A {Homo sapiens}
Length = 155
Score = 28.1 bits (62), Expect = 4.7
Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 1/76 (1%)
Query: 91 LEPANGGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTR 150
L + GG + +L + G+V + S I D G
Sbjct: 8 LGSSWGGLIHLYTATARNSYHLQIHKNGHVDGAPHQ-TIYSALMIRSEDAGFVVITGVMS 66
Query: 151 GYFLGASSDKLICTAK 166
+L I +
Sbjct: 67 RRYLCMDFRGNIFGSH 82
Score = 28.1 bits (62), Expect = 4.7
Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 1/76 (1%)
Query: 297 LEPANGGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTR 356
L + GG + +L + G+V + S I D G
Sbjct: 8 LGSSWGGLIHLYTATARNSYHLQIHKNGHVDGAPHQ-TIYSALMIRSEDAGFVVITGVMS 66
Query: 357 GYFLGASSDKLICTAK 372
+L I +
Sbjct: 67 RRYLCMDFRGNIFGSH 82
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 5.0
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 4/26 (15%)
Query: 519 KDELFTLEDSL----PQASFIAALNS 540
K L L+ SL ++ A+ +
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKA 44
Score = 28.4 bits (62), Expect = 5.0
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 4/26 (15%)
Query: 578 KDELFTLEDSL----PQASFIAALNS 599
K L L+ SL ++ A+ +
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKA 44
Score = 28.0 bits (61), Expect = 5.3
Identities = 14/66 (21%), Positives = 17/66 (25%), Gaps = 36/66 (54%)
Query: 58 KKKQFKYLTAETFGFKINANGASLKKKQDGVWILEPANGGDTLSVYLRSHLGKYLAVDSF 117
+K+ K L ASLK D PA LA+
Sbjct: 18 EKQALKKLQ------------ASLKLYADDS---APA-----------------LAI--- 42
Query: 118 GNVTCE 123
T E
Sbjct: 43 -KATME 47
>2zoo_A Probable nitrite reductase; electron transfer, electron transport,
heme, iron, binding, oxidoreductase, transport; HET: SUC
HEM; 1.95A {Pseudoalteromonas haloplanktis}
Length = 442
Score = 29.1 bits (65), Expect = 5.0
Identities = 11/63 (17%), Positives = 16/63 (25%), Gaps = 20/63 (31%)
Query: 397 RKRFAHLSENLDE-IHVDANI------------PWGEDTLF-------TLEFRAEDSGKY 436
R + NL HV I T +EF+ E G +
Sbjct: 215 RLYIGNGGPNLVSSFHVIGEIFDTVYVEGGSLKNHNVQTTLIPAGGAAIVEFKVEVPGTF 274
Query: 437 AVH 439
+
Sbjct: 275 ILV 277
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.404
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,222,463
Number of extensions: 548359
Number of successful extensions: 1004
Number of sequences better than 10.0: 1
Number of HSP's gapped: 959
Number of HSP's successfully gapped: 67
Length of query: 614
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 515
Effective length of database: 3,937,614
Effective search space: 2027871210
Effective search space used: 2027871210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.3 bits)