RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15563
(614 letters)
>d1dfca2 b.42.5.1 (A:1141-1259) Fascin {Human (Homo sapiens) [TaxId:
9606]}
Length = 119
Score = 174 bits (443), Expect = 9e-53
Identities = 54/142 (38%), Positives = 77/142 (54%), Gaps = 25/142 (17%)
Query: 389 QVNLRSVGRKRFAHLSEN-LDEIHVDANIPWGEDTLFTLEFRAEDSGKYAVHTCNNKYLS 447
QVN+ SV RKR+AHLS DEI VD ++PWG D+L TL F+ +Y+V T ++++L
Sbjct: 1 QVNIYSVTRKRYAHLSARPADEIAVDRDVPWGVDSLITLAFQ---DQRYSVQTADHRFLR 57
Query: 448 REGKLVDTCNANCLFSLEYHAGEFCFLYLFIWLRPIRSPATGQIALRDNSGAYLSPIGSK 507
+G+LV ++LE+ + G++A RD G YL+P G
Sbjct: 58 HDGRLVARPEPATGYTLEFRS--------------------GKVAFRDCEGRYLAPSGPS 97
Query: 508 AILKT-RSNTVTKDELFTLEDS 528
LK ++ V KDELF LE S
Sbjct: 98 GTLKAGKATKVGKDELFALEQS 119
>d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId:
9606]}
Length = 133
Score = 129 bits (326), Expect = 4e-36
Identities = 58/129 (44%), Positives = 78/129 (60%), Gaps = 1/129 (0%)
Query: 261 WTIGLINAQFKYLTAETFGFKINANGASLKKKQVWILEPANG-GDTLSVYLRSHLGKYLA 319
GLIN KYLTAE FGFK+NA+ +SLKKKQ+W LE + +V LRSHLG+YLA
Sbjct: 5 IQFGLINCGNKYLTAEAFGFKVNASASSLKKKQIWTLEQPPDEAGSAAVCLRSHLGRYLA 64
Query: 320 VDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIPANPEY 379
D GNVTCE + P F I D+G+W+ +++ + G + D+L C A+ + E
Sbjct: 65 ADKDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEK 124
Query: 380 WLAHLAARP 388
W H+A P
Sbjct: 125 WSVHIAMHP 133
Score = 115 bits (289), Expect = 5e-31
Identities = 58/138 (42%), Positives = 78/138 (56%), Gaps = 12/138 (8%)
Query: 46 FGFKINANGASLKKKQFKYLTAETFGFKINANGASLKKKQDGVWILEPANG-GDTLSVYL 104
FG IN KYLTAE FGFK+NA+ +SLKKKQ +W LE + +V L
Sbjct: 7 FGL-INCGN--------KYLTAEAFGFKVNASASSLKKKQ--IWTLEQPPDEAGSAAVCL 55
Query: 105 RSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLICT 164
RSHLG+YLA D GNVTCE + P F I D+G+W+ +++ + G + D+L C
Sbjct: 56 RSHLGRYLAADKDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCF 115
Query: 165 AKIPANPEYWLAHLAARP 182
A+ + E W H+A P
Sbjct: 116 AQTVSPAEKWSVHIAMHP 133
Score = 41.8 bits (98), Expect = 3e-05
Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 5/83 (6%)
Query: 100 LSVYLRSHLGKYLAVDSFGN-VTCEADEKEPGSLFQIHV----SDEGKWAFKNKTRGYFL 154
+ L + KYL ++FG V A + ++ + + ++ Y
Sbjct: 5 IQFGLINCGNKYLTAEAFGFKVNASASSLKKKQIWTLEQPPDEAGSAAVCLRSHLGRYLA 64
Query: 155 GASSDKLICTAKIPANPEYWLAH 177
+ C ++P +L
Sbjct: 65 ADKDGNVTCEREVPGPDCRFLIV 87
>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId:
9606]}
Length = 123
Score = 86.1 bits (213), Expect = 8e-21
Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 4/123 (3%)
Query: 263 IGLINAQFKYLTAETFGFKINANGASLKKKQVWILEPANGGDTLSVYLRSHLGKYLAVDS 322
+ L A + ++ G ++AN ++ + LE R+H GKY + +
Sbjct: 4 VVLQAANERNVSTRQ-GMDLSANQDEETDQETFQLEIDRDTKK--CAFRTHTGKYWTLTA 60
Query: 323 FGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIPANPEYWLA 382
G V A K F I D + + + + +L + + + E +L
Sbjct: 61 TGGVQSTASSKNASCYFDIEWRD-RRITLRASNGKFVTSKKNGQLAASVETAGDSELFLM 119
Query: 383 HLA 385
L
Sbjct: 120 KLI 122
Score = 78.4 bits (193), Expect = 4e-18
Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 6/124 (4%)
Query: 56 SLKKKQFKYLTAETFGFKINANGASLKKKQDGVWILEPANGGDTLSVYLRSHLGKYLAVD 115
L+ + ++ G ++AN ++ + LE R+H GKY +
Sbjct: 5 VLQAANERNVSTRQ-GMDLSANQDEETDQE--TFQLEIDRDTKK--CAFRTHTGKYWTLT 59
Query: 116 SFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIPANPEYWL 175
+ G V A K F I D + + + + +L + + + E +L
Sbjct: 60 ATGGVQSTASSKNASCYFDIEWRD-RRITLRASNGKFVTSKKNGQLAASVETAGDSELFL 118
Query: 176 AHLA 179
L
Sbjct: 119 MKLI 122
Score = 65.7 bits (160), Expect = 1e-13
Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 32/145 (22%)
Query: 388 PQVNLRSVGRKRFAHLSENLDEIHVDANIPW-GEDTLFTLEFRAEDSGKYAVHTCNNKYL 446
QV L++ + + + + + AN + F LE D+ K A T KY
Sbjct: 2 AQVVLQAANERNVS--TRQ--GMDLSANQDEETDQETFQLEID-RDTKKCAFRTHTGKYW 56
Query: 447 SREGKLVDTCNA-----NCLFSLEYHAGEFCFLYLFIWLRPIRSPATGQIALRDNSGAYL 501
+ A +C F +E+ +I LR ++G ++
Sbjct: 57 TLTATGGVQSTASSKNASCYFDIEWR--------------------DRRITLRASNGKFV 96
Query: 502 SPIGSKAILKTRSNTVTKDELFTLE 526
+ L T ELF ++
Sbjct: 97 T-SKKNGQLAASVETAGDSELFLMK 120
Score = 48.0 bits (114), Expect = 2e-07
Identities = 22/145 (15%), Positives = 43/145 (29%), Gaps = 33/145 (22%)
Query: 441 CNNKYLSREGKLVDTCNANCLFSLEYHAGEFCFLYLFIWLRPIRSPATGQIALRDNSGAY 500
N + +S L + + + F T + A R ++G Y
Sbjct: 9 ANERNVSTR-------QGMDLSANQDEETDQE---TFQL---EIDRDTKKCAFRTHTGKY 55
Query: 501 LSPIGSKAILKTRSNTVTKDELFTLEDSLPQASFIAALNSKYVSVKQGQIALRDNSGAYL 560
+ + + T S + F +E +I LR ++G ++
Sbjct: 56 WTLTATGGVQSTAS-SKNASCYFDIEWR------------------DRRITLRASNGKFV 96
Query: 561 SPIGSKAILKTRSNTVTKDELFTLE 585
+ L T ELF ++
Sbjct: 97 T-SKKNGQLAASVETAGDSELFLMK 120
Score = 40.7 bits (95), Expect = 7e-05
Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 102 VYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDE-GKWAFKNKTRGYFLGASSDK 160
V L++ + ++ +++ DE+ FQ+ + + K AF+ G + ++
Sbjct: 4 VVLQAANERNVSTRQGMDLSANQDEETDQETFQLEIDRDTKKCAFRT-HTGKYWTLTATG 62
Query: 161 -LICTAKIPANPEYW 174
+ TA Y+
Sbjct: 63 GVQSTASSKNASCYF 77
Score = 35.6 bits (82), Expect = 0.003
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 28/103 (27%)
Query: 530 PQASFIAALNSKYVSVKQG-------------------------QIALRDNSGAYLSPIG 564
Q AA N + VS +QG + A R ++G Y +
Sbjct: 2 AQVVLQAA-NERNVSTRQGMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTA 60
Query: 565 SKAILKTRSNTVTKDELFTLEDSLPQASFIAALNSKYVSVKQA 607
+ + T S + F +E + + A+ N K+V+ K+
Sbjct: 61 TGGVQSTAS-SKNASCYFDIEWRDRRITLRAS-NGKFVTSKKN 101
>d1dfca4 b.42.5.1 (A:1383-1493) Fascin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 74.4 bits (183), Expect = 7e-17
Identities = 23/139 (16%), Positives = 39/139 (28%), Gaps = 32/139 (23%)
Query: 387 RPQVNLRSVGRKRFAHLSENLDEIHVDANIPWGEDTLFTLEFRAEDSGKYAVHTCNNKY- 445
RP + R G F + + + + +F LEF G Y + KY
Sbjct: 1 RPIIVFR--GEHGFIGCRKVTGTLDANRSSY----DVFQLEFN---DGAYNIKDSTGKYW 51
Query: 446 -LSREGKLVDTCNANCLFSLEYHAGEFCFLYLFIWLRPIRSPATGQIALRDNSGAYLSPI 504
+ + + + + F E+ G YL
Sbjct: 52 TVGSDSAVTSSGDTPVDFFFEFCD--------------------YNKVAIKVGGRYLK-G 90
Query: 505 GSKAILKTRSNTVTKDELF 523
+LK + TV L+
Sbjct: 91 DHAGVLKASAETVDPASLW 109
Score = 32.8 bits (75), Expect = 0.028
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 104 LRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLIC 163
R G G + + +FQ+ +D G + K+ T Y+ S +
Sbjct: 6 FRGEHGFIGCRKVTGTLDANRSSYD---VFQLEFND-GAYNIKDSTGKYWTVGSDSAVTS 61
Query: 164 TAKIPAN 170
+ P +
Sbjct: 62 SGDTPVD 68
Score = 32.8 bits (75), Expect = 0.028
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 310 LRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLIC 369
R G G + + +FQ+ +D G + K+ T Y+ S +
Sbjct: 6 FRGEHGFIGCRKVTGTLDANRSSYD---VFQLEFND-GAYNIKDSTGKYWTVGSDSAVTS 61
Query: 370 TAKIPAN 376
+ P +
Sbjct: 62 SGDTPVD 68
Score = 32.5 bits (74), Expect = 0.036
Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 6/74 (8%)
Query: 102 VYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGA-SSDK 160
++ GKY V S VT D F D K A K G +L +
Sbjct: 41 YNIKDSTGKYWTVGSDSAVTSSGDTPV---DFFFEFCDYNKVAIKVG--GRYLKGDHAGV 95
Query: 161 LICTAKIPANPEYW 174
L +A+ W
Sbjct: 96 LKASAETVDPASLW 109
Score = 32.5 bits (74), Expect = 0.036
Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 6/74 (8%)
Query: 308 VYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGA-SSDK 366
++ GKY V S VT D F D K A K G +L +
Sbjct: 41 YNIKDSTGKYWTVGSDSAVTSSGDTPV---DFFFEFCDYNKVAIKVG--GRYLKGDHAGV 95
Query: 367 LICTAKIPANPEYW 380
L +A+ W
Sbjct: 96 LKASAETVDPASLW 109
>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein
(hisactophilin) {Dictyostelium discoideum [TaxId:
44689]}
Length = 118
Score = 61.0 bits (148), Expect = 4e-12
Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 27/130 (20%)
Query: 434 GKYAVHTCNNKYLSREGKLVDTC----NANCLFSLEYHAGEFCFLYLFIWLRPIRSPATG 489
G A + + +LS EG+ V T + + F +E H G
Sbjct: 2 GNRAFKSHHGHFLSAEGEAVKTHHGHHDHHTHFHVENHG--------------------G 41
Query: 490 QIALRDNSGAYLSPIGSKAILKTRSNTVTKDELFTLEDSLPQASFIAALNSKYVSVKQ-G 548
++AL+ + G YLS K + + LF LE + S + Y+S G
Sbjct: 42 KVALKTHCGKYLSIGDHKQVYLSHH-LHGDHSLFHLEHHGGKVSIKGH-HHHYISADHHG 99
Query: 549 QIALRDNSGA 558
++ +++
Sbjct: 100 HVSTKEHHDH 109
Score = 50.6 bits (121), Expect = 2e-08
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 8/110 (7%)
Query: 271 KYLTAETFGFKINANGASLKKKQVWILEPANGGDTLSVYLRSHLGKYLAVDSFGNVTCEA 330
+L+AE K + + +E G V L++H GKYL++ V
Sbjct: 12 HFLSAEGEAVKTHHGHHD--HHTHFHVENHGG----KVALKTHCGKYLSIGDHKQVYLSH 65
Query: 331 DEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIPANPEYW 380
SLF + GK + K +++ A + T + + +
Sbjct: 66 HLHGDHSLFHLEHHG-GKVSIKGHH-HHYISADHHGHVSTKEHHDHDTTF 113
Score = 49.5 bits (118), Expect = 5e-08
Identities = 25/119 (21%), Positives = 39/119 (32%), Gaps = 22/119 (18%)
Query: 489 GQIALRDNSGAYLSPIGSKAILKTRSNTVTKDELFTLEDSLPQASFIAALNSKYVSVKQG 548
G A + + G +LS G KT F +E+ G
Sbjct: 2 GNRAFKSHHGHFLSAEGEAV--KTHHGHHDHHTHFHVENH------------------GG 41
Query: 549 QIALRDNSGAYLSPIGSKAILKTRSNTVTKDELFTLEDSLPQASFIAALNSKYVSVKQA 607
++AL+ + G YLS K + + LF LE + S + Y+S
Sbjct: 42 KVALKTHCGKYLSIGDHKQVYLSHH-LHGDHSLFHLEHHGGKVSIKGH-HHHYISADHH 98
Score = 48.0 bits (114), Expect = 2e-07
Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 10/112 (8%)
Query: 63 KYLTAETFGFKINANGASLKKKQDGVWILEPANGGDTLSVYLRSHLGKYLAVDSFGNVTC 122
+L+AE K + + +E G V L++H GKYL++ V
Sbjct: 12 HFLSAEGEAVKTHHGHHD----HHTHFHVENHGG----KVALKTHCGKYLSIGDHKQVYL 63
Query: 123 EADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLICTAKIPANPEYW 174
SLF + GK + K +++ A + T + + +
Sbjct: 64 SHHLHGDHSLFHLEHHG-GKVSIKGHH-HHYISADHHGHVSTKEHHDHDTTF 113
Score = 44.9 bits (106), Expect = 2e-06
Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 310 LRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLIC 369
+SH G +L+ + V + + F + GK A K Y ++
Sbjct: 6 FKSHHGHFLSAEGEA-VKTHHGHHDHHTHFHVENHG-GKVALKTHCGKYLSIGDHKQVYL 63
Query: 370 TAKIPANPEYWLAHLAARPQVNLRS 394
+ + + + +V+++
Sbjct: 64 SHHLHGDHSLFHLEH-HGGKVSIKG 87
Score = 42.9 bits (101), Expect = 1e-05
Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Query: 104 LRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLIC 163
+SH G +L+ + V + + F + GK A K Y ++
Sbjct: 6 FKSHHGHFLSAEGEA-VKTHHGHHDHHTHFHVENHG-GKVALKTHCGKYLSIGDHKQVYL 63
Query: 164 TAKIPANPEYW 174
+ + + +
Sbjct: 64 SHHLHGDHSLF 74
Score = 33.7 bits (77), Expect = 0.015
Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 22/107 (20%)
Query: 399 RFAH---LSENLDEIHVDANIPWGEDTLFTLEFRAEDSGKYAVHTCNNKYLSREGKLVDT 455
+ H LS + + T F +E GK A+ T KYLS
Sbjct: 7 KSHHGHFLSAEGEAVKTHHGHH-DHHTHFHVENH---GGKVALKTHCGKYLSIGDHKQVY 62
Query: 456 CNANCLFSLEYHAGEFCFLYLFIWLRPIRSPATGQIALRDNSGAYLS 502
+ + G+++++ + Y+S
Sbjct: 63 LSHHLHGDHS-------------LFHLEHHG--GKVSIKGHHHHYIS 94
>d1ihka_ b.42.1.1 (A:) Fibroblast growth factor 9, FGF9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 157
Score = 32.5 bits (74), Expect = 0.060
Identities = 9/73 (12%), Positives = 22/73 (30%)
Query: 96 GGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLG 155
G L G +L + G + + + + G + + G +LG
Sbjct: 7 KGILRRRQLYCRTGFHLEIFPNGTIQGTRKDHSRFGILEFISIAVGLVSIRGVDSGLYLG 66
Query: 156 ASSDKLICTAKIP 168
+ + ++
Sbjct: 67 MNEKGELYGSEKL 79
Score = 32.5 bits (74), Expect = 0.060
Identities = 9/73 (12%), Positives = 22/73 (30%)
Query: 302 GGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLG 361
G L G +L + G + + + + G + + G +LG
Sbjct: 7 KGILRRRQLYCRTGFHLEIFPNGTIQGTRKDHSRFGILEFISIAVGLVSIRGVDSGLYLG 66
Query: 362 ASSDKLICTAKIP 374
+ + ++
Sbjct: 67 MNEKGELYGSEKL 79
>d1r75a_ b.134.1.1 (A:) Unnamed hypothetical protein {Leishmania
major [TaxId: 5664]}
Length = 121
Score = 31.7 bits (72), Expect = 0.073
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 117 FGNVTCEADEK---EPGSLFQIHVSDEGKWAFKNKTRGY 152
G T + + L++I ++ +WAF N ++
Sbjct: 5 NGKPTVKGTKTYPMFSNILYRIADTEARRWAFYNDSKEL 43
Score = 31.7 bits (72), Expect = 0.073
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 323 FGNVTCEADEK---EPGSLFQIHVSDEGKWAFKNKTRGY 358
G T + + L++I ++ +WAF N ++
Sbjct: 5 NGKPTVKGTKTYPMFSNILYRIADTEARRWAFYNDSKEL 43
>d2fe0a1 b.134.1.1 (A:1-131) Small myristoylated protein 1, Smp-1
{Leishmania major [TaxId: 5664]}
Length = 131
Score = 31.3 bits (71), Expect = 0.13
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 126 EKEPGSLFQIHVSDEGKWAFKNKTRGY 152
EK+ G LF+I + +WA+ N T Y
Sbjct: 31 EKDNGLLFRIVNKKKKQWAYYNDTTQY 57
Score = 31.3 bits (71), Expect = 0.13
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 332 EKEPGSLFQIHVSDEGKWAFKNKTRGY 358
EK+ G LF+I + +WA+ N T Y
Sbjct: 31 EKDNGLLFRIVNKKKKQWAYYNDTTQY 57
>d1ijta_ b.42.1.1 (A:) Fibroblast growth factor 4 (FGF4) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 29.8 bits (67), Expect = 0.45
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 103 YLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLI 162
Y +G +L G + A SL ++ + G + +F+ SS +
Sbjct: 9 YCNVGIGFHLQALPDGRIGG-AHADTRDSLLELSPVERGVVSIFGVASRFFVAMSSKGKL 67
Query: 163 CTAKIP 168
+
Sbjct: 68 YGSPFF 73
Score = 29.8 bits (67), Expect = 0.45
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 309 YLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLGASSDKLI 368
Y +G +L G + A SL ++ + G + +F+ SS +
Sbjct: 9 YCNVGIGFHLQALPDGRIGG-AHADTRDSLLELSPVERGVVSIFGVASRFFVAMSSKGKL 67
Query: 369 CTAKIP 374
+
Sbjct: 68 YGSPFF 73
>d1nuna_ b.42.1.1 (A:) Fibroblast growth factor-10, FGF10 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 139
Score = 29.4 bits (66), Expect = 0.62
Identities = 17/73 (23%), Positives = 28/73 (38%)
Query: 96 GGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLG 155
GD L S +L ++ G V+ E P S+ +I + G A K Y+L
Sbjct: 6 QGDVRWRKLFSFTKYFLKIEKNGKVSGTKKENCPYSILEITSVEIGVVAVKAINSNYYLA 65
Query: 156 ASSDKLICTAKIP 168
+ + +K
Sbjct: 66 MNKKGKLYGSKEF 78
Score = 29.4 bits (66), Expect = 0.62
Identities = 17/73 (23%), Positives = 28/73 (38%)
Query: 302 GGDTLSVYLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGKWAFKNKTRGYFLG 361
GD L S +L ++ G V+ E P S+ +I + G A K Y+L
Sbjct: 6 QGDVRWRKLFSFTKYFLKIEKNGKVSGTKKENCPYSILEITSVEIGVVAVKAINSNYYLA 65
Query: 362 ASSDKLICTAKIP 374
+ + +K
Sbjct: 66 MNKKGKLYGSKEF 78
>d2di8a1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId:
9606]}
Length = 98
Score = 28.4 bits (63), Expect = 0.88
Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 17/101 (16%)
Query: 49 KINANGASLKKKQFKYLTAETFGFKINANGASLKK------KQDGVWILEPANGGDTLSV 102
+ G L + + T E F ++ A V I T V
Sbjct: 6 RAKVYGRGLSEGR----TFEMSDFIVDTRDAGYGGISLAVEGPSKVDIQTEDLEDGTCKV 61
Query: 103 -YLRSHLGKYLAVDSFGNVTCEADEKEPGSLFQIHVSDEGK 142
Y + G Y+ + ADE PGS F + +S EG+
Sbjct: 62 SYFPTVPGVYIV-----STKF-ADEHVPGSPFTVKISGEGR 96
Score = 27.6 bits (61), Expect = 1.6
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 23/91 (25%)
Query: 281 KINANGASLKKKQV------WILEPANGGDTLSVYLRSHLGKYLAVDSFGNVTCE----- 329
+ G L + + + G +S+ + + + + TC+
Sbjct: 6 RAKVYGRGLSEGRTFEMSDFIVDTRDAGYGGISLAVEGPSKVDIQTEDLEDGTCKVSYFP 65
Query: 330 ------------ADEKEPGSLFQIHVSDEGK 348
ADE PGS F + +S EG+
Sbjct: 66 TVPGVYIVSTKFADEHVPGSPFTVKISGEGR 96
>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter
freundii [TaxId: 546]}
Length = 397
Score = 28.1 bits (62), Expect = 3.1
Identities = 21/160 (13%), Positives = 54/160 (33%), Gaps = 6/160 (3%)
Query: 358 YFLGASSDKLICTAKIPANPEYWLAHLAARPQVNLRSVGRKRFAHLSENLDE----IHVD 413
L D ++ + I +L+H + +N+R V + + + ++++
Sbjct: 96 LTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAGKPEEIRAAMRPETKVVYIE 155
Query: 414 ANIPWGEDTLFTLEFRAEDSGKYAVHTCNNKYLSREGKLVDTCNANCLFS--LEYHAGEF 471
+ + A+ +N ++S + A+ + +Y G
Sbjct: 156 TPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHG 215
Query: 472 CFLYLFIWLRPIRSPATGQIALRDNSGAYLSPIGSKAILK 511
+ I + + L+D +G +SP + L+
Sbjct: 216 DVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLR 255
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.404
Gapped
Lambda K H
0.267 0.0657 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,236,533
Number of extensions: 104771
Number of successful extensions: 277
Number of sequences better than 10.0: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 38
Length of query: 614
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 523
Effective length of database: 1,158,166
Effective search space: 605720818
Effective search space used: 605720818
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.5 bits)