Query psy15564
Match_columns 1041
No_of_seqs 435 out of 1369
Neff 6.6
Searched_HMMs 46136
Date Sat Aug 17 00:29:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15564.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15564hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1410|consensus 100.0 9E-178 2E-182 1489.1 44.0 705 287-1041 99-1050(1082)
2 KOG1321|consensus 100.0 3.3E-50 7.2E-55 425.6 14.6 296 10-327 12-362 (395)
3 COG0276 HemH Protoheme ferro-l 100.0 2.8E-42 6E-47 379.4 13.7 270 31-323 2-315 (320)
4 PLN02449 ferrochelatase 100.0 3.5E-40 7.6E-45 381.2 19.4 276 30-326 85-414 (485)
5 KOG4541|consensus 100.0 1.1E-38 2.4E-43 357.0 26.1 425 540-1040 243-727 (748)
6 TIGR00109 hemH ferrochelatase. 100.0 4.7E-37 1E-41 346.3 18.1 272 31-325 2-321 (322)
7 PRK12435 ferrochelatase; Provi 100.0 6.2E-36 1.3E-40 334.4 15.8 262 32-323 2-304 (311)
8 PF00762 Ferrochelatase: Ferro 100.0 1.1E-36 2.3E-41 341.9 6.9 264 34-322 1-312 (316)
9 KOG1321|consensus 100.0 2.7E-34 5.9E-39 304.9 13.7 206 74-293 36-243 (395)
10 PRK00035 hemH ferrochelatase; 100.0 2.3E-31 4.9E-36 302.8 18.6 270 31-323 2-320 (333)
11 COG0276 HemH Protoheme ferro-l 100.0 4.1E-30 8.9E-35 283.4 15.9 227 75-327 4-243 (320)
12 PLN02449 ferrochelatase 100.0 3.2E-29 6.9E-34 290.4 15.8 200 74-292 87-291 (485)
13 TIGR00109 hemH ferrochelatase. 99.9 1.8E-27 3.8E-32 268.7 16.0 199 75-294 4-205 (322)
14 PF00762 Ferrochelatase: Ferro 99.9 7.9E-28 1.7E-32 270.3 10.4 196 76-292 1-198 (316)
15 PRK12435 ferrochelatase; Provi 99.9 8E-26 1.7E-30 253.2 14.7 189 75-294 3-191 (311)
16 cd03411 Ferrochelatase_N Ferro 99.9 6.7E-25 1.5E-29 223.8 15.5 159 35-252 1-159 (159)
17 KOG1410|consensus 99.9 4E-25 8.7E-30 252.4 7.3 120 563-687 241-371 (1082)
18 PRK00035 hemH ferrochelatase; 99.9 6.7E-24 1.5E-28 241.6 15.5 198 75-292 4-204 (333)
19 cd00419 Ferrochelatase_C Ferro 99.4 2.6E-13 5.7E-18 134.7 8.2 106 192-309 19-135 (135)
20 PF08767 CRM1_C: CRM1 C termin 98.7 3.4E-07 7.3E-12 104.1 18.3 135 841-995 109-244 (319)
21 cd03411 Ferrochelatase_N Ferro 96.8 0.00081 1.8E-08 69.0 3.2 75 74-148 50-142 (159)
22 cd03409 Chelatase_Class_II Cla 96.2 0.033 7.2E-07 52.1 9.5 72 138-230 13-85 (101)
23 cd03414 CbiX_SirB_C Sirohydroc 90.8 2.6 5.7E-05 40.6 11.0 107 136-265 8-115 (117)
24 KOG1241|consensus 89.8 31 0.00067 43.3 20.7 276 693-1008 230-543 (859)
25 cd03415 CbiX_CbiC Archaeal sir 88.8 5.9 0.00013 39.2 11.6 112 135-265 7-124 (125)
26 PLN02757 sirohydrochlorine fer 86.4 10 0.00022 38.9 12.2 79 173-269 55-134 (154)
27 cd00419 Ferrochelatase_C Ferro 85.7 3.9 8.5E-05 40.9 8.6 79 136-228 35-116 (135)
28 PRK00923 sirohydrochlorin coba 84.7 4.8 0.0001 39.5 8.7 114 136-265 9-125 (126)
29 PF11864 DUF3384: Domain of un 80.1 48 0.001 40.1 16.5 136 747-925 147-284 (464)
30 COG5101 CRM1 Importin beta-rel 77.6 27 0.00058 42.9 12.6 67 859-925 841-907 (1053)
31 cd03412 CbiK_N Anaerobic cobal 69.0 18 0.0004 35.7 7.5 60 136-199 8-79 (127)
32 PRK05782 bifunctional sirohydr 68.7 45 0.00097 38.6 11.6 116 135-269 13-134 (335)
33 cd03416 CbiX_SirB_N Sirohydroc 58.3 40 0.00086 31.4 7.4 34 166-199 33-67 (101)
34 cd03409 Chelatase_Class_II Cla 57.4 25 0.00054 32.5 5.8 40 256-299 44-83 (101)
35 PF01903 CbiX: CbiX; InterPro 56.9 19 0.0004 33.9 4.9 80 165-261 25-105 (105)
36 PRK02395 hypothetical protein; 47.0 3E+02 0.0066 30.9 13.4 79 241-321 101-189 (279)
37 PF06180 CbiK: Cobalt chelatas 42.3 1.9E+02 0.0042 32.4 10.6 24 176-199 58-81 (262)
38 KOG2022|consensus 34.4 1.2E+03 0.026 30.6 24.7 181 719-931 691-872 (982)
39 cd03413 CbiK_C Anaerobic cobal 33.1 1.6E+02 0.0034 28.1 7.1 33 166-198 32-64 (103)
40 PF11841 DUF3361: Domain of un 33.0 2.7E+02 0.0059 28.9 9.1 79 888-980 53-134 (160)
41 cd03414 CbiX_SirB_C Sirohydroc 30.0 3E+02 0.0064 26.2 8.6 62 257-322 45-113 (117)
42 KOG2171|consensus 26.5 1.2E+03 0.027 31.2 15.2 64 866-933 362-425 (1075)
43 PLN03076 ARF guanine nucleotid 26.4 3.4E+02 0.0073 38.5 11.0 67 865-931 1237-1304(1780)
44 PF04821 TIMELESS: Timeless pr 26.1 6E+02 0.013 28.4 11.3 59 740-798 49-107 (266)
45 PF08623 TIP120: TATA-binding 25.3 6.9E+02 0.015 26.2 10.7 57 868-931 43-99 (169)
46 PF02985 HEAT: HEAT repeat; I 20.1 1.3E+02 0.0028 21.8 3.1 30 898-927 1-30 (31)
No 1
>KOG1410|consensus
Probab=100.00 E-value=8.8e-178 Score=1489.11 Aligned_cols=705 Identities=53% Similarity=0.892 Sum_probs=675.0
Q ss_pred chhhhHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHH----------HHHHHHHHhhhhhcC---CCc--------
Q psy15564 287 LPLRALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQV----------QKNSKVYRRLNEVLG---LCD-------- 345 (1041)
Q Consensus 287 ~~~~tl~eL~~~itkl~~~~~ln~~~~Fi~~l~~l~~~lQ~----------~~l~~l~~~~~~~~~---~~~-------- 345 (1041)
-.+.+|++++|++||+||+++.+|+.+|+++++++.+|+|+ +||++||+|||+++| .+|
T Consensus 99 fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqemN~~~~~~p~tkHRkias~F 178 (1082)
T KOG1410|consen 99 FVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEMNQADGMDPSTKHRKIASSF 178 (1082)
T ss_pred HHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHHhhCCCCCCcchHHHHHHhhh
Confidence 34678999999999999999999999999999999999986 999999999999997 344
Q ss_pred -chhHHHHH------HHHhhhhhcccCcchH-HHHHHHhh-hccccccccccccccchhhhhhccccccccCCCcccccC
Q psy15564 346 -EATVLSVF------VRKIITNLKYWGRSEQ-IITKTLQL-LNDLSVGYSCVRKLVKLDEVQFMLNNHTIPTSWRPAFLD 416 (1041)
Q Consensus 346 -d~~ll~if------l~~~~~nl~~~~~~~~-l~~~~l~L-~~cLs~df~~~~~~~~~de~~~~~~~~~ip~~w~~~~~~ 416 (1041)
|+.|++|| ++.. .+++..+++|. |+.++|+| +|||+||||| ++.|||+||+|||||||+||++|+|
T Consensus 179 RD~sL~~vf~laln~L~~~-~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiG----ss~DEssed~ctVQIPTsWRs~f~d 253 (1082)
T KOG1410|consen 179 RDDSLFDVFSLALNLLKDN-VDLNLNDRAQLGLLMQVLKLNLNCLNFDFIG----SSTDESSEDLCTVQIPTSWRSSFLD 253 (1082)
T ss_pred hhhHHHHHHHHHHHHHHHh-cccCcccHhHhhHHHHHHHHHhhhccccccc----cccccccccccceecCcHHHHHhcC
Confidence 99999999 2222 47899999888 99999999 9999999999 9999999999999999999999999
Q ss_pred chhHHHHHHhhhcCCCCCCCc------------------ccccCccccccccchhh---------------hhhhh----
Q psy15564 417 PNTLKLFFNLYHSLPSTLSHL------------------SEHFPFLGNNVADVSEM---------------RCRSM---- 459 (1041)
Q Consensus 417 ~~~~~~~f~~y~~~~~~~~~~------------------~er~~fl~~~~~~~~~i---------------~cr~~---- 459 (1041)
++|+|+|||+||++||++|.+ +||++||++++.|+++| |||++
T Consensus 254 ~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~il~np~~LsD~~nyHeFCRllaRlk 333 (1082)
T KOG1410|consen 254 SSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRILENPQGLSDPANYHEFCRLLARLK 333 (1082)
T ss_pred chHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCcCCCCcchHHHHHHHHHHHH
Confidence 999999999999999999887 89999999999999999 99999
Q ss_pred hhhhhh------------------------------------------------------------------------hh
Q psy15564 460 FYTSLG------------------------------------------------------------------------RL 467 (1041)
Q Consensus 460 ~~~~L~------------------------------------------------------------------------rl 467 (1041)
+||||| ||
T Consensus 334 tNYQL~ELv~v~~Y~e~irLiAeFTv~SLq~wefa~nSvyyLlt~WqRmvaSVPyvk~~~phlLd~y~PeIt~afi~SRl 413 (1082)
T KOG1410|consen 334 TNYQLGELVKVECYPEVIRLIAEFTVTSLQHWEFAPNSVYYLLTLWQRMVASVPYVKNTEPHLLDTYCPEITKAFITSRL 413 (1082)
T ss_pred hhhhhHhhhccCCcHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhcCCcccCCChHHHhhhcHHHHHHHHHHHh
Confidence 999997 99
Q ss_pred hcc-----cCCCCH-------------------------------------HHHHHhhcc----------chhhHHHHHH
Q psy15564 468 LMV-----DLGEDE-------------------------------------DRFEAFMLP----------LTSRLTWLVY 495 (1041)
Q Consensus 468 ~~v-----d~~ed~-------------------------------------~~~~~~~~~----------~~~~~~wl~~ 495 (1041)
.+| |+.||| +.|++...+ .||+++||||
T Consensus 414 ~sV~~ivrd~~d~PLdd~~~~~q~le~l~~icRceYEkTc~llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wlv~ 493 (1082)
T KOG1410|consen 414 QSVEIIVRDGLDDPLDDTGAVQQQLEQLATICRCEYEKTCALLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWLVY 493 (1082)
T ss_pred hhhheecccCCCCcchhhHHHHHHHHHhhhhhhhhHhhHHHHHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhhHH
Confidence 998 678888 667776633 8999999999
Q ss_pred HHHHhhCCccccCcccccccchhHHHHHHHHHhhccCCCCCCCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCcccccC
Q psy15564 496 IIGAAVGGRVSFNSNEDHDAMDGELVCRVLQLMNLTDPRLLGPGPGCEKLELAMLSFFEQFRKIYVGDQIPTSWRPAFLD 575 (1041)
Q Consensus 496 ~~g~~~~~~~~~~~~~~~~~~~geL~~~v~~l~~~~d~~~~~~~~~~~~le~a~l~F~~~frk~y~~~q~p~sw~~~~~~ 575 (1041)
+||++||||.++++.|+||+|||||+||||||++++|+|+ |..+++|||+||||||+||||+|||||+..+
T Consensus 494 lvgtvV~gk~t~~Std~~d~mDgEL~arvlql~nlmdsr~--~~~~n~rle~ail~f~eqFRk~YvgDQ~~rs------- 564 (1082)
T KOG1410|consen 494 LVGTVVGGKTTATSTDEHDAMDGELSARVLQLVNLMDSRL--PLKGNERLELAILHFLEQFRKAYVGDQIQRS------- 564 (1082)
T ss_pred HhHHHhcceecccccchhhhhhhHHHHHHHHHHHhhhccc--chhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999 8899999999999999999999999999988
Q ss_pred cchhHHHHHHhhcCCchhhhhhHHHHHHHhhhhhcccCchHHHHHHHHHHHHHHHHhcCCCCCCCcccH-HHHHHHHHHH
Q psy15564 576 PNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRSLFSNAERARFLTQLVNGVKQILQNPQGLSDANNY-HEFCRLLARL 654 (1041)
Q Consensus 576 ~~~~~lff~~y~~~~~~ls~~~l~clv~~~s~rrs~f~~de~~~~l~~l~~g~~~Il~n~~~~~~~~~~-~~~~~Ll~~l 654 (1041)
+++| +++++.+ |+ +||. .+|+.+ +.||++|+++|++.+.+ ..++.||.+|
T Consensus 565 ---SkvY----~rl~e~L---gi---------------~de~-~~L~vi---v~KI~TNLK~w~~~e~vi~~tLslf~dL 615 (1082)
T KOG1410|consen 565 ---SKVY----ARLSEVL---GI---------------TDES-DVLGVI---VGKILTNLKYWGRNEPVISLTLSLFNDL 615 (1082)
T ss_pred ---HHHH----HHHHHHh---CC---------------CchH-HHHHHH---HHHHHhhcccccCCchHHHHHHHHHHHH
Confidence 7876 9999999 88 8988 999999 99999999999999999 9999999999
Q ss_pred Hhccccccccccccccccccc-----cCCCCCCCCCCCccccchhhHHHHHHHHHHHHHhccCcccHHHHHHHhchhhhc
Q psy15564 655 KSNYQLVKPGCRRLSALQYLE-----FPSEHFPFLGNNVADVSEMRCRSMFYTSLGRLLMVDLGEDEDRFEAFMLPLTSN 729 (1041)
Q Consensus 655 ~~~~~~~~~~~r~l~~~~~~~-----h~~~~f~fL~~~~~~~~~~~~Rt~fy~~L~~ll~~~~~e~~~~f~~fl~Pl~~~ 729 (1041)
+.||..+ |+|+|++.|+ ||+|||||||.+ .+.+++|+||+||.+||||+|+|.+||++.|++||.||++.
T Consensus 616 s~GY~~~----kkL~kl~~VqfmlnNHT~ehF~FLg~~-~~~~~~r~RTTFY~al~rLl~~d~sede~~fe~fm~PLt~~ 690 (1082)
T KOG1410|consen 616 SLGYSAV----KKLVKLDAVQFMLNNHTSEHFPFLGIN-IDLQDMRCRTTFYTALTRLLMVDLSEDEDMFERFMLPLTDA 690 (1082)
T ss_pred hhhHHHH----HHHhcchhhhhHhcccchhhCcccccC-ccchhhhhHhHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 9999998 9999999999 999999999985 77899999999999999999999999999999999999982
Q ss_pred -------------------------------------------------CCchhHHHHHHHHHhhCCCchHHHHHHHHHH
Q psy15564 730 -------------------------------------------------YPVYTPIFLAAVERWYAEPEVTTPILKLFAE 760 (1041)
Q Consensus 730 -------------------------------------------------yp~~~~vl~~~i~~~~~~p~vv~~iLkf~~E 760 (1041)
||.++|+++++++.|+++|+|++||||||+|
T Consensus 691 fe~v~~~~~nn~f~ee~vK~~liGL~RDLRGiA~A~~tktsy~~LFdWmYP~~mpllq~~Ve~W~~~p~vtTPiLklmaE 770 (1082)
T KOG1410|consen 691 FEGVLQVFQNNCFEEEQVKRILIGLCRDLRGIAFASNTKTSYQMLFDWMYPEYMPLLQRAVEKWYGCPDVTTPILKLMAE 770 (1082)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHHhhhhhhhhccchHHHHHHHHhhhhHHHHHHHHHHhcCCCCccccHHHHHHHH
Confidence 9999999999999999999999999999999
Q ss_pred HHhhccccccccCCChhHHhHHHHHHHHHHHHhcccccc-cCCcchhhhhhhhhHHHHHHHHHHhHcCCCcccccccccC
Q psy15564 761 LVQNRSQRLQFDVSSPNGILLFREASKIICSYGSRILSV-EVPDDKLYSHKLKGISICFSMLKAALCGGYVNFGVFRLYG 839 (1041)
Q Consensus 761 lv~nr~~RL~f~~ssp~gilLFre~s~ii~~Y~~~il~~-~~~~~~~y~~k~K~I~~~l~iL~~~Lsg~yvnFgvf~lYg 839 (1041)
+|+||+|||+||+||||||+||||+||+|++||++|+++ +++++++|++|||||++|+.||+++|+|||||||||++||
T Consensus 771 ~v~NrsQRL~Fd~SSpngiLLFrEtSKmv~~YG~riL~Lp~vskdqiY~~kyKgI~v~~siLk~AL~GnYv~FGVFrLYG 850 (1082)
T KOG1410|consen 771 LVQNRSQRLKFDVSSPNGILLFRETSKMVSIYGNRILQLPEVSKDQIYAEKYKGISVCFSILKNALSGNYVNFGVFRLYG 850 (1082)
T ss_pred HHhhhHhheecccCCCceeEEehhhhHHHHHHhhHhhcccCcchhhhHHHHhcCceehHHHHHHHhhcCccccceeeeeC
Confidence 999999999999999999999999999999999999999 7889999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHhhccchhhhhcchhhHHHHHHHHHHHHHhhHHHHhcCCHHHHHHHHHHHHHhcccCchhHhhhHHH
Q psy15564 840 DEALDNALKTFVKLLLSINQSDLLDYPKLSQTYYVLLECLAQDHMSFLASLEPTVFLYILSSISEGLTALDTMVCTGCCA 919 (1041)
Q Consensus 840 D~~l~~al~~~~~l~l~IP~~dLl~yPKL~~~yf~lle~l~e~~~~~l~~L~~~~f~~ll~sl~~GL~s~d~~i~~~c~~ 919 (1041)
|+++++|+..|++|.++||.+|+++|+|++++||.|+|+++++||.||.+|+|++|+++++||+.||+++|+.|+++||+
T Consensus 851 D~~l~daL~~fvKm~lsIp~sD~l~Y~Klsqsyy~llE~l~qdhm~Fi~nL~~~vfm~ll~Si~sGLt~lDt~v~ssccs 930 (1082)
T KOG1410|consen 851 DSALDDALQTFVKMLLSIPHSDLLSYRKLSQSYYNLLEVLTQDHMPFITNLEPDVFMYLLRSISSGLTSLDTIVSSSCCS 930 (1082)
T ss_pred chHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHhhHHHHHHhccchhhhcCcHHHHHHHHHHHHhccchhhHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCCCCCchhhHHHHHhhhChHHHHHHHHHHHHHHhhccCCchhcchhhhHHHhhcCHH
Q psy15564 920 TLDHIVTYLFKQITNKGKKKSGRPGASPTGTDMFLQVLEVRPEILQQILSTVLNIIMFEDCRNQWSMSRPLLGLILLNEE 999 (1041)
Q Consensus 920 ~Ld~lat~~~k~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~~~ll~~~L~~l~n~ilfed~~~~ws~Sr~Ll~LIl~~~~ 999 (1041)
++|+|++|+||+++++.+|. |.....|++++++.++++||+++++||++++|+++||||+||||+||||++||+++|+
T Consensus 931 slD~i~tYlfk~itr~~~p~--~~~~~tpa~~r~l~~i~q~Pdil~qml~tl~~ii~Fedc~nQWSlSRPlLgLILi~E~ 1008 (1082)
T KOG1410|consen 931 SLDTIVTYLFKRITRSTKPT--RKVGMTPAGDRFLHAIQQHPDILQQMLSTLINIIMFEDCRNQWSLSRPLLGLILINEK 1008 (1082)
T ss_pred HHHHHHHHHHHHHhccCCCc--CcCCCChhHHHHHHHHHhChHHHHHHHHHHHHHHhHHhhcccccccchhhHHHhhhHH
Confidence 99999999999999988874 4444458999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhhccccCCcccCCC
Q psy15564 1000 YFNQLRENIVRGQPPDKQASMVQWFENLMNSIERNLLTKNRD 1041 (1041)
Q Consensus 1000 ~f~~l~~~li~~Q~~~~qq~l~~aF~~Lm~~ie~nL~~knrd 1041 (1041)
+|+.++.+|+++||+++||++..||++||+|||+||+.||||
T Consensus 1009 ~fSdlk~~l~ssQp~dkqq~l~~cF~~LM~~ve~nL~~KNrD 1050 (1082)
T KOG1410|consen 1009 YFSDLKASLTSSQPYDKQQDLDMCFTNLMEGVERNLTVKNRD 1050 (1082)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccccchh
Confidence 999999999999999999999999999999999999999998
No 2
>KOG1321|consensus
Probab=100.00 E-value=3.3e-50 Score=425.56 Aligned_cols=296 Identities=24% Similarity=0.302 Sum_probs=230.4
Q ss_pred ccceeeeccCCCCCCc--CCCCCCCCceEEEEEecCCCCCcchhHHHHhhhcCccccccCC--CCCCC--------chhH
Q psy15564 10 RLFSIQVCNSQASPST--GAKDSSKPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLP--VQGIT--------RPKT 77 (1041)
Q Consensus 10 ~~~~~~~~~~~~~~~~--~~~~~~~~k~aVlLlNlGGP~s~~~V~~FL~nlFsD~~II~~p--~~~~l--------~~k~ 77 (1041)
++-+-+.|-+.++.++ .+....++||||||||||||.++++|.|||+|||+|||||++| +|+.+ +||+
T Consensus 12 ~~~~t~~~~~~s~~a~~~~~~~~~k~ktgilllNmGGP~~lddV~~FL~rLfaD~DiI~Lp~~~Q~~lakfIak~RtPKv 91 (395)
T KOG1321|consen 12 FLVSTQLTISASSSATFSSSVAQKKPKTGILLLNMGGPETLDDVQDFLYRLFADPDIIPLPAFLQKTLAKFIAKRRTPKV 91 (395)
T ss_pred HhhcCcccccCCccccccccccccCCCceEEEEcCCCCcchhhHHHHHHHHhcCCCeeeCCHHHHhhHHHHHHHhcCchH
Confidence 3445566666555333 3334567899999999999999999999999999999999998 67544 6899
Q ss_pred HHHHHhcCCCCChHHHHHHHHhhcC---C-------C--CceeCCCccch-hhhhcccCChhhH--------HhhhccCC
Q psy15564 78 AILMLNMGGPTHTDQVSEYLHRIMT---D-------R--DMIQLPVQGKL-GPYIARRRTPEVQ--------KKYQEIGG 136 (1041)
Q Consensus 78 avly~~iGGpSpl~~l~~fL~~~l~---d-------~--~vi~~py~~Pl-~~~I~~~r~~~~~--------~qYs~itt 136 (1041)
.+.|..|||+||+..|.++..+.++ | + ..+.++||+|+ .+.+......+++ ||||+.|+
T Consensus 92 qe~Y~~IGGGSPir~wT~~Q~~~m~k~Ld~~~petaphk~YVgfRY~~PlTEea~~qikkd~v~r~VafsqYPQyS~sTs 171 (395)
T KOG1321|consen 92 QEQYREIGGGSPIRKWTEYQAEEMCKILDKKCPETAPHKPYVGFRYAHPLTEEALEQIKKDGVTRAVAFSQYPQYSCSTS 171 (395)
T ss_pred HHHHHhccCCCchhHHHHHHHHHHHHHHHhcCcccCCccceeeeeecCcccHHHHHHHHhcCceeEEeeccCCceeeecC
Confidence 9999999999999888777766442 1 1 24456788887 4555554443433 89999999
Q ss_pred CChHHHHHHHHHHHHHHHhhhcCCCCCCceEEEEec-CCCc-cHHHHHHHHH----Hc----CCcEEEEeecCCCCCCcc
Q psy15564 137 GSPILKWTQLQGEKMANKLNSVCPEYGPHKHYVAFR-YADP-LTEETLDQIE----KD----GAERVVIFSQYPQDGAER 206 (1041)
Q Consensus 137 gSpl~~~t~~qa~~L~~~L~~~~~~~~~~~v~~a~r-y~~P-~I~~~l~~l~----~~----g~~~illfSahP~~~~~~ 206 (1041)
||+++.+.+...+. .. -.++++.++.| +.++ +|++..+.+. .. ..+.+|+|||| ++|-+
T Consensus 172 GSSln~l~r~~r~~--~~-------~~~~~wsiIdrW~t~~glIkafA~~I~keL~~F~~~~r~~VVIlFSAH--slPms 240 (395)
T KOG1321|consen 172 GSSLNELWRQFRED--GY-------ERDIKWSIIDRWPTREGLIKAFAENIEKELQTFPEPVRDDVVILFSAH--SLPMS 240 (395)
T ss_pred cccHHHHHHHHHhc--Cc-------ccCCceEeeccccccchHHHHHHHHHHHHHHhcCCcccccEEEEEecC--CCcHH
Confidence 99999998865432 00 12456666666 4455 6666555443 22 23468999998 77777
Q ss_pred eee-ccCchhHHHHhHHHHHHHHHHHHhhcCCCCCcceeeecCCCCChhHHHHHHHHHHHHHhhCCCCCCCceEEE-Eee
Q psy15564 207 VVI-FSQYPQYSCATSGSSLNAIYTHLNKKGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPVEVQKDVIIL-FSA 284 (1041)
Q Consensus 207 iv~-gd~YP~~s~~Tt~s~~~~v~e~L~~~~~~~~l~~qsI~r~g~~pwl~pat~d~I~~~l~~~~~~g~~~v~lV-~Sf 284 (1041)
+|- |||||.+.++|+ +.+|+.|+.. ++|++.||| ++||.||+.|+|++.|+. ++++|.+++.+| ++|
T Consensus 241 ~Vn~GDpY~~Ei~atv----~~iMeeL~~~-N~y~lawQS--kVGP~pWL~p~Tde~i~~----lgk~g~knll~VPIaF 309 (395)
T KOG1321|consen 241 VVNAGDPYPAEIAATV----DLIMEELKYK-NPYRLAWQS--KVGPLPWLGPATDEVIEG----LGKKGVKNLLLVPIAF 309 (395)
T ss_pred HHhcCCCcHHHHHHHH----HHHHHHhccC-Ccchhhhhc--ccCCccccccchHHHHHH----HHhhcccceEEEeehh
Confidence 777 999999999987 5888888875 799999999 999999999999999854 556677788888 999
Q ss_pred ecchhhhHHHHHHHH---------hhcccccCCCCCHHHHHHHHHHH-HHHHH
Q psy15564 285 HSLPLRALVTLFARI---------TKLGWFDSEKDEFVFRNVIQDVS-NFLQV 327 (1041)
Q Consensus 285 HS~~~~tl~eL~~~i---------tkl~~~~~ln~~~~Fi~~l~~l~-~~lQ~ 327 (1041)
+|+|+|||.||+.|+ ++.+|++++|++|.||++++|++ .+||.
T Consensus 310 vSeHIETL~EiD~ey~e~a~k~gve~~~Rv~sln~~p~fI~~lADlV~ehL~s 362 (395)
T KOG1321|consen 310 VSEHIETLHEIDIEYIEEALKKGVENWKRVESLNGNPTFIEGLADLVAEHLKS 362 (395)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHhhhhheeccCCCCCccHHHHHHHHHHHhhhh
Confidence 999999999997554 78999999999999999999999 69976
No 3
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=100.00 E-value=2.8e-42 Score=379.43 Aligned_cols=270 Identities=21% Similarity=0.269 Sum_probs=210.3
Q ss_pred CCCceEEEEEecCCCCCcchhHHHHhhhcCccccccCC--CCCCC--------chhHHHHHHhcCCCCChH----HHHHH
Q psy15564 31 SKPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLP--VQGIT--------RPKTAILMLNMGGPTHTD----QVSEY 96 (1041)
Q Consensus 31 ~~~k~aVlLlNlGGP~s~~~V~~FL~nlFsD~~II~~p--~~~~l--------~~k~avly~~iGGpSpl~----~l~~f 96 (1041)
+++|+||||||||||+++++|+|||+|+|+||+|+++| ++..| .++++..|..|||.||+. ++...
T Consensus 2 ~~~k~avLL~nlG~P~~~e~v~~yL~~~~~d~~v~~~~~~~~~~l~~~I~~~R~~~~~~~Y~~igg~sPL~~~T~~q~~~ 81 (320)
T COG0276 2 KMKKTAVLLLNLGGPETLEDVRPYLKNFLSDRRVIELPRPLWYPLAGIILPLRLKKVAKNYESIGGKSPLNVITRAQAAA 81 (320)
T ss_pred CCCceEEEEEecCCCCChHHHHHHHHHHhcCCCCCCCchhhhhhhhhhhhhhccHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 46789999999999999999999999999999999995 22113 689999999999999994 45555
Q ss_pred HHhhcC--CCCce-eCCCccch-hhhhcccCChhhH--------HhhhccCCCChHHHHHHHHHHHHHHHhhhcCCCCCC
Q psy15564 97 LHRIMT--DRDMI-QLPVQGKL-GPYIARRRTPEVQ--------KKYQEIGGGSPILKWTQLQGEKMANKLNSVCPEYGP 164 (1041)
Q Consensus 97 L~~~l~--d~~vi-~~py~~Pl-~~~I~~~r~~~~~--------~qYs~ittgSpl~~~t~~qa~~L~~~L~~~~~~~~~ 164 (1041)
|++.+. +..|. .++||+|+ .+++..++..+++ ||||.+|+||.++.+.++..++ . . .
T Consensus 82 L~~~L~~~~~~V~~amry~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~-~---~-------~ 150 (320)
T COG0276 82 LEERLDLPDFKVYLAMRYGPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKEL-R---G-------Q 150 (320)
T ss_pred HHHHhCCCCccEEEeecCCCCcHHHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHHHHHHhc-C---C-------C
Confidence 555543 33333 36899997 6777788777775 8999999999999988875431 1 1 1
Q ss_pred ceEEEEec-CCCc-cHHHHHHHH----HHcC-CcEEEEeecCCCCCCcceee-ccCchhHHHHhHHHHHHHHHHHHhhcC
Q psy15564 165 HKHYVAFR-YADP-LTEETLDQI----EKDG-AERVVIFSQYPQDGAERVVI-FSQYPQYSCATSGSSLNAIYTHLNKKG 236 (1041)
Q Consensus 165 ~~v~~a~r-y~~P-~I~~~l~~l----~~~g-~~~illfSahP~~~~~~iv~-gd~YP~~s~~Tt~s~~~~v~e~L~~~~ 236 (1041)
.++.++-+ |.+| ||+..++.+ ++.+ .+..|+|||| |+|++++. |||||++|..|+. .+++.++-..
T Consensus 151 ~~i~~I~~~~~~p~yI~a~a~~I~~~~~~~~~~~~~llfSaH--glP~~~~~~GDpY~~q~~~t~~----li~e~lg~~~ 224 (320)
T COG0276 151 PKISTIPDYYDEPLYIEALADSIREKLAKHPRDDDVLLFSAH--GLPKRYIDEGDPYPQQCQETTR----LIAEALGLPE 224 (320)
T ss_pred CceEEecCccCChHHHHHHHHHHHHHHHhcCCCCeEEEEecC--CCchhhhhcCCchHHHHHHHHH----HHHHHcCCCc
Confidence 13444434 7788 777766644 3433 2356889998 88888777 9999999999996 5556666322
Q ss_pred CCCCcceeeecCCCCChhHHHHHHHHHHHHHhhCCCCCCCceEEE-EeeecchhhhHHHHHHHH---------hhccccc
Q psy15564 237 SPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPVEVQKDVIIL-FSAHSLPLRALVTLFARI---------TKLGWFD 306 (1041)
Q Consensus 237 ~~~~l~~qsI~r~g~~pwl~pat~d~I~~~l~~~~~~g~~~v~lV-~SfHS~~~~tl~eL~~~i---------tkl~~~~ 306 (1041)
..+.++||| ++|+.||+.|+|++.+++. +++|.++++++ ++|++||+|||+|++.+. .+|.++|
T Consensus 225 ~~~~~~~QS--~~G~~~WL~P~t~~~l~~L----~~~g~k~iiv~pigFvsDhlETL~Eid~e~~e~~~~~Gg~~y~rip 298 (320)
T COG0276 225 EEYDLTFQS--RFGPEPWLQPYTDDLLEEL----GEKGVKKIIVVPIGFVSDHLETLYEIDHEYRELAEEAGGKKYVRIP 298 (320)
T ss_pred hheeEEeec--CCCCCCCCCCCHHHHHHHH----HhcCCCeEEEECCchhhhhHHHHHHHHHHHHHHHHHhCCccEEecC
Confidence 355799999 9999999999999999763 33355578888 999999999999997444 5588999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy15564 307 SEKDEFVFRNVIQDVSN 323 (1041)
Q Consensus 307 ~ln~~~~Fi~~l~~l~~ 323 (1041)
|+||++.|+++++++++
T Consensus 299 ~lN~~p~fi~~la~lv~ 315 (320)
T COG0276 299 CLNDSPEFIDALADLVR 315 (320)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999999884
No 4
>PLN02449 ferrochelatase
Probab=100.00 E-value=3.5e-40 Score=381.16 Aligned_cols=276 Identities=21% Similarity=0.244 Sum_probs=209.9
Q ss_pred CCCCceEEEEEecCCCCCcchhHHHHhhhcCccccccCC-----CCCCC--------chhHHHHHHhcCCCCChH----H
Q psy15564 30 SSKPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLP-----VQGIT--------RPKTAILMLNMGGPTHTD----Q 92 (1041)
Q Consensus 30 ~~~~k~aVlLlNlGGP~s~~~V~~FL~nlFsD~~II~~p-----~~~~l--------~~k~avly~~iGGpSpl~----~ 92 (1041)
.+++|+||||+|||||+++++|+|||+|||+||+||++| +|+++ ++|+++.|..|||+||+. +
T Consensus 85 ~~~~k~gVLLlNlGgPes~~dV~pFL~nlfsD~~II~lP~~~~~~~~~La~~Ia~~R~~ks~~~Y~~IGGgSPL~~iT~~ 164 (485)
T PLN02449 85 VSEEKVGVLLLNLGGPETLDDVQPFLYNLFADPDIIRLPRLFRFLQKPLAQFISNLRAPKSKEGYASIGGGSPLRKITDE 164 (485)
T ss_pred ccCCceEEEEEeCCCCCChhHHHHHHHHhcCCCCeeeCchhhhHHHHHHHHHHhccCcHHHHHHHHHCCCCCchHHHHHH
Confidence 456689999999999999999999999999999999997 23333 589999999999999994 4
Q ss_pred HHHHHHhhcCCC--C-ce--eCCCccch-hhhhcccCChhhH--------HhhhccCCCChHHHHHHHHHHHHHHHhhhc
Q psy15564 93 VSEYLHRIMTDR--D-MI--QLPVQGKL-GPYIARRRTPEVQ--------KKYQEIGGGSPILKWTQLQGEKMANKLNSV 158 (1041)
Q Consensus 93 l~~fL~~~l~d~--~-vi--~~py~~Pl-~~~I~~~r~~~~~--------~qYs~ittgSpl~~~t~~qa~~L~~~L~~~ 158 (1041)
+.+.|++.+.+. + .+ .|+||+|+ .+.+...+..+++ |||+.+|+||.++.+.+...+. ..+
T Consensus 165 Qa~~Lq~~L~~~~~~~~V~~aMRY~~P~iedal~~l~~~G~~~iVvLPLYPQyS~sTtgSs~~~l~~~~~~~--~~~--- 239 (485)
T PLN02449 165 QAEALAKALEAKNLPAKVYVGMRYWHPFTEEAIDQIKADGITKLVVLPLYPQFSISTSGSSLRLLESIFRED--EYL--- 239 (485)
T ss_pred HHHHHHHHHhccCCCeEEEEhhhcCCCCHHHHHHHHHhcCCCeEEEEECCcccccccHHHHHHHHHHHHhhc--ccc---
Confidence 455555555432 1 12 36799997 5777777665555 8999999999998776643321 000
Q ss_pred CCCCCCceEEEEec-CCCc-cHHHHHHHHHH----cC--CcEEEEeecCCCCCCccee-e-ccCchhHHHHhHHHHHHHH
Q psy15564 159 CPEYGPHKHYVAFR-YADP-LTEETLDQIEK----DG--AERVVIFSQYPQDGAERVV-I-FSQYPQYSCATSGSSLNAI 228 (1041)
Q Consensus 159 ~~~~~~~~v~~a~r-y~~P-~I~~~l~~l~~----~g--~~~illfSahP~~~~~~iv-~-gd~YP~~s~~Tt~s~~~~v 228 (1041)
...++.++.+ |.+| ||++.++.+.+ .+ .+..|+|||| |+|+++| . ||||+++|.+|+. ++
T Consensus 240 ----~~~~~~~I~~~~~~p~yI~A~a~~I~~~l~~~~~~~~~~LlFSAH--GlP~~~v~~~GDpY~~q~~~ta~----lI 309 (485)
T PLN02449 240 ----VNMQHTVIPSWYQREGYVKAMADLIKKELAKFSDPEEVHIFFSAH--GVPVSYVEEAGDPYKAQMEECVD----LI 309 (485)
T ss_pred ----cCCeeEEeccccCChHHHHHHHHHHHHHHHhccCcCCcEEEEecC--CChhhhhhhcCCChHHHHHHHHH----HH
Confidence 0124455544 7788 87777765542 22 1245889998 8888888 5 9999999999986 45
Q ss_pred HHHHhhcC--CCCCcceeeecCCCCChhHHHHHHHHHHHHHhhCCCCCCCceEEE-EeeecchhhhHHHHHHHH------
Q psy15564 229 YTHLNKKG--SPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPVEVQKDVIIL-FSAHSLPLRALVTLFARI------ 299 (1041)
Q Consensus 229 ~e~L~~~~--~~~~l~~qsI~r~g~~pwl~pat~d~I~~~l~~~~~~g~~~v~lV-~SfHS~~~~tl~eL~~~i------ 299 (1041)
++.++..+ .++.++||| |+||.||+.|+|.+.|++ +.+ +|.++++++ +||+|||+|||+||+.|+
T Consensus 310 ~~~L~~~~~~~~~~layQS--R~Gp~eWL~P~t~d~L~~-L~~---~Gvk~VlvvPigFvSDhiETL~EiDiE~re~a~e 383 (485)
T PLN02449 310 MEELKARGILNRHTLAYQS--RVGPVEWLKPYTDETIVE-LGK---KGVKSLLAVPISFVSEHIETLEEIDMEYRELALE 383 (485)
T ss_pred HHHhCCCCCCCCeEEEEeC--CCCCCCCCCCCHHHHHHH-HHH---cCCCeEEEECCcccccchHHHHHHHHHHHHHHHH
Confidence 55565422 456799999 999999999999999965 322 355578888 999999999999997555
Q ss_pred ---hhcccccCCCCCHHHHHHHHHHH-HHHH
Q psy15564 300 ---TKLGWFDSEKDEFVFRNVIQDVS-NFLQ 326 (1041)
Q Consensus 300 ---tkl~~~~~ln~~~~Fi~~l~~l~-~~lQ 326 (1041)
++|.++||+|++|.|+++|++++ +.+.
T Consensus 384 ~G~~~~~rVP~LN~~p~FI~~La~lV~~~l~ 414 (485)
T PLN02449 384 SGIENWGRVPALGCEPTFISDLADAVIEALP 414 (485)
T ss_pred cCCceEEEcCCCCCCHHHHHHHHHHHHHHhh
Confidence 56889999999999999999988 4553
No 5
>KOG4541|consensus
Probab=100.00 E-value=1.1e-38 Score=356.98 Aligned_cols=425 Identities=16% Similarity=0.168 Sum_probs=340.9
Q ss_pred CChhhHHHHHHHHHHHHHHHhhccCCCCCCcccccCcchhHHHHHHhhcCCchhhhhhHHHHHHHhhhhhcccCch-H-H
Q psy15564 540 PGCEKLELAMLSFFEQFRKIYVGDQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRSLFSNA-E-R 617 (1041)
Q Consensus 540 ~~~~~le~a~l~F~~~frk~y~~~q~p~sw~~~~~~~~~~~lff~~y~~~~~~ls~~~l~clv~~~s~rrs~f~~d-e-~ 617 (1041)
.++|.|-..+-||++.|.+.|.- ++.+.|++++...+ ..|++| | +
T Consensus 243 l~Sp~l~~~l~rfl~a~~~~~~~------------------~~~~~y~~~s~~~~---------------tv~p~~te~s 289 (748)
T KOG4541|consen 243 LGSPALIARLARFLDATIPFLAK------------------LFSDHYARLSQGRG---------------TVDPTETEES 289 (748)
T ss_pred ccCHHHHHHHHHHHHhhhhHHHH------------------HhHHHHHHhcCCCC---------------CCCcccchhh
Confidence 68999999999999999998865 45566787665553 467777 4 4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcccH-HHHHHHHHHHHhccccccccccccccccccc-----cCCCCCCCCCCCcccc
Q psy15564 618 ARFLTQLVNGVKQILQNPQGLSDANNY-HEFCRLLARLKSNYQLVKPGCRRLSALQYLE-----FPSEHFPFLGNNVADV 691 (1041)
Q Consensus 618 ~~~l~~l~~g~~~Il~n~~~~~~~~~~-~~~~~Ll~~l~~~~~~~~~~~r~l~~~~~~~-----h~~~~f~fL~~~~~~~ 691 (1041)
++.+..+ +.|++.++-.|+.++.. ..+++.+-.++..-.-. ..++.+++++ ..+..-|. +.
T Consensus 290 ~~~~~~i---i~kVla~lvn~~sE~~L~~Da~q~l~~lVe~~~~~----~vvv~~e~~~~laeq~~s~~~~l------~i 356 (748)
T KOG4541|consen 290 VYSLLLI---IGKVLADLVNGESETALVPDALQSLFVLVEEANNH----PVVVLSESIIKLAEQCLSAEMRL------SI 356 (748)
T ss_pred HHHHHHH---HHHHHHHHhcccchhhhhHHHHHHHHHHHHHhccC----CeeeccHHHHHHHHHHhccCCcc------cc
Confidence 6888888 99999999999999998 99999998888764433 5667788777 22222221 12
Q ss_pred chhhHHHHHHHHHHHHHhc--cCcccHHHHHHHhchhhhc----------------------------CC-------chh
Q psy15564 692 SEMRCRSMFYTSLGRLLMV--DLGEDEDRFEAFMLPLTSN----------------------------YP-------VYT 734 (1041)
Q Consensus 692 ~~~~~Rt~fy~~L~~ll~~--~~~e~~~~f~~fl~Pl~~~----------------------------yp-------~~~ 734 (1041)
-..+.|.+.+++|++.+|. |..+..+.|...++||..+ |+ .+|
T Consensus 357 ~s~p~~~~lmkaLvl~gfa~~d~e~~~n~~~~~LqpL~~Rf~~~~nq~~q~~~~~~Ii~~l~~~~g~a~a~q~d~~~~Lf 436 (748)
T KOG4541|consen 357 FSPPLMEALMKALVLWGFAYLDLEEECNLGSNKLQPLPSRFFTYFNQHNQGKFVLDIIVRLSLTSGTAYAGQKDLQRSLF 436 (748)
T ss_pred cCchHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccHHHHHHHhcccchhhHHHHHHHHHHHhccccccccchhHHHHH
Confidence 3356777777999999998 4334478899999999985 32 222
Q ss_pred HH-------HHHHHHHhhCCCchHHHHHHHHHHHHhhccccccccCCChhHHhHHHHHHHHHHHHhcccccccCCcchhh
Q psy15564 735 PI-------FLAAVERWYAEPEVTTPILKLFAELVQNRSQRLQFDVSSPNGILLFREASKIICSYGSRILSVEVPDDKLY 807 (1041)
Q Consensus 735 ~v-------l~~~i~~~~~~p~vv~~iLkf~~Elv~nr~~RL~f~~ssp~gilLFre~s~ii~~Y~~~il~~~~~~~~~y 807 (1041)
.. +..+|+.+.+.|++|..|+..+.|+++..+.++. +....+.||..|..+.+.|+............+|
T Consensus 437 ~fL~~~~~~c~glm~s~~~~~~~v~~i~~~~vdvs~k~~~y~~---~e~~~~~ly~sclql~~~y~~~~~~r~rt~~a~~ 513 (748)
T KOG4541|consen 437 QFLVLSAYGCRGLMASNQYVKDLVAHITSSLVDVSNKSDLYNL---AEQPDIILYVSCLQLERLYGAASATRPRTQRAIY 513 (748)
T ss_pred HHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHhhhhhhhhcc---ccChhHHHHHHHHHHHHHhhhhcccCcchHHHHH
Confidence 22 2557778999999999999999999999888886 4677899999999999999976555533355689
Q ss_pred hhhhhhHHHHHHHHHHhHcCCCcccccccccCCChHh-HHHHHHHHHhhccc--hhhhhcchhhHHHHHHHHHHHHHhhH
Q psy15564 808 SHKLKGISICFSMLKAALCGGYVNFGVFRLYGDEALD-NALKTFVKLLLSIN--QSDLLDYPKLSQTYYVLLECLAQDHM 884 (1041)
Q Consensus 808 ~~k~K~I~~~l~iL~~~Lsg~yvnFgvf~lYgD~~l~-~al~~~~~l~l~IP--~~dLl~yPKL~~~yf~lle~l~e~~~ 884 (1041)
+|+|.++.+++++|+|.++++|+.||. .|.+.. .|.|+++|+.++.| +.++++|||+|.+||.+|.+|||..|
T Consensus 514 Ee~~sdl~lvl~lL~n~lskdF~~~s~----e~~~~~G~a~VV~~gl~~ilplm~~~lLk~P~lc~~~~~lIty~ce~~p 589 (748)
T KOG4541|consen 514 EEGLSDLNLVLRLLENYLSKDFSSDSI----ETQSTNGIAQVVYFGLHIILPLMTLELLKYPKLCFDDVDLITYMCERAP 589 (748)
T ss_pred HhhhhHHHHHHHHHHHHhhhhhhcccc----ccccccCcceEEEeeHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999986 233332 39999999999999 99999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhccc-CchhHhhhHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchhhHHHHHhhhChHH
Q psy15564 885 SFLASLEPTVFLYILSSISEGLTA-LDTMVCTGCCATLDHIVTYLFKQITNKGKKKSGRPGASPTGTDMFLQVLEVRPEI 963 (1041)
Q Consensus 885 ~~l~~L~~~~f~~ll~sl~~GL~s-~d~~i~~~c~~~Ld~lat~~~k~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~~~l 963 (1041)
+.++++|.+++..++.|+..||+. ..++.+..|.+++-++++-+- + || ..++++ -+
T Consensus 590 e~la~~~~~l~~sl~qc~~LGMTge~~s~~l~~~~e~v~hfgspan----k------gr------cTqnla-------fL 646 (748)
T KOG4541|consen 590 EALASYHYKLKNSLNQCSGLGMTGESHSAGLHTDPEGVFHFGSPAN----K------GR------CTQNLA-------FL 646 (748)
T ss_pred HHHhhhhHHHHHHHHHhhccCCccccchHhhccChHhhhccccccc----c------cc------ccccHH-------HH
Confidence 999999999999999999999993 444455555566555553221 1 11 233443 44
Q ss_pred HHHHHHHHHHHHhhccCCchh--cchhhhHHHhhcCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhhccccC-CcccC
Q psy15564 964 LQQILSTVLNIIMFEDCRNQW--SMSRPLLGLILLNEEYFNQLRENIVRGQP-PDKQASMVQWFENLMNSIERN-LLTKN 1039 (1041)
Q Consensus 964 l~~~L~~l~n~ilfed~~~~w--s~Sr~Ll~LIl~~~~~f~~l~~~li~~Q~-~~~qq~l~~aF~~Lm~~ie~n-L~~kn 1039 (1041)
+.+||+++|++++|+||+++. .+..+||+||+|+|..|++++++|+++|. |..+|+|+.||++||+..... |+.+|
T Consensus 647 ~~efL~tvf~~ll~~~~~t~l~s~a~~Aly~LI~~e~~~y~elvneL~skq~np~~~qrLa~Af~~Lt~sn~~psldR~~ 726 (748)
T KOG4541|consen 647 SREFLRTVFHFLLFEDYSTDLVSTAADALYPLILCEPNLYQELVNELISKQANPNFKQRLANAFQVLTTSNQLPSLDRLN 726 (748)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccChHHHHHHHHHHHHHhccCCCCCccHHH
Confidence 678999999999999999998 66779999999999999999999999999 778999999999999886444 88877
Q ss_pred C
Q psy15564 1040 R 1040 (1041)
Q Consensus 1040 r 1040 (1041)
|
T Consensus 727 ~ 727 (748)
T KOG4541|consen 727 Y 727 (748)
T ss_pred H
Confidence 5
No 6
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=100.00 E-value=4.7e-37 Score=346.33 Aligned_cols=272 Identities=18% Similarity=0.250 Sum_probs=207.4
Q ss_pred CCCceEEEEEecCCCCCcchhHHHHhhhcCccccccCC---CCCCC--------chhHHHHHHhcCCCCChH----HHHH
Q psy15564 31 SKPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLP---VQGIT--------RPKTAILMLNMGGPTHTD----QVSE 95 (1041)
Q Consensus 31 ~~~k~aVlLlNlGGP~s~~~V~~FL~nlFsD~~II~~p---~~~~l--------~~k~avly~~iGGpSpl~----~l~~ 95 (1041)
+++|+||||+|||||+++++|++||.|||+||+||++| +++++ ++|+++.|..|||+||+. ++.+
T Consensus 2 ~~~k~~VlL~n~G~P~~~~~v~~yL~~~~~D~~vi~~p~~~~~~~l~~~I~~~R~~k~~~~Y~~igg~SPl~~~t~~q~~ 81 (322)
T TIGR00109 2 KRKKTGVLLMNLGGPDKLEEVERFLKQLFADPRIIDISRAKWRKPLAKMILPLRSPKIAKNYEAIGGGSPLLQITEQQAH 81 (322)
T ss_pred CCCceEEEEEeCCCCCCHHHHHHHHHHHcCCcchhcCCccccccchHHHHHhhccHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 45689999999999999999999999999999999996 33433 689999999999999994 4566
Q ss_pred HHHhhcCC---CCce-eCCCccch-hhhhcccCChhhH--------HhhhccCCCChHHHHHHHHHHHHHHHhhhcCCCC
Q psy15564 96 YLHRIMTD---RDMI-QLPVQGKL-GPYIARRRTPEVQ--------KKYQEIGGGSPILKWTQLQGEKMANKLNSVCPEY 162 (1041)
Q Consensus 96 fL~~~l~d---~~vi-~~py~~Pl-~~~I~~~r~~~~~--------~qYs~ittgSpl~~~t~~qa~~L~~~L~~~~~~~ 162 (1041)
.|++.+.+ -.|. .|.||+|. ...+...+..+++ |||+.+|+||..+.+.+...+. .. .
T Consensus 82 ~l~~~l~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~iv~lPL~PqyS~~t~gs~~~~~~~~l~~~-~~-~------- 152 (322)
T TIGR00109 82 ALEKRLPNEIDFKVYIAMRYGEPFTEEAVKELLKDGVERAVVLPLYPHFSSSTTGSSFNELAEALKKL-RS-L------- 152 (322)
T ss_pred HHHHHhccCCCceEEEeeccCCCCHHHHHHHHHhcCCCeEEEEeCCcccccccHHHHHHHHHHHHHhc-cc-C-------
Confidence 66666643 2222 25799996 5667766655555 8999999999999888765431 10 0
Q ss_pred CCceEEEEec-CCCc-cHHHHHHHHHHc----CC-c-EEEEeecCCCCCCcceee-ccCchhHHHHhHHHHHHHHHHHHh
Q psy15564 163 GPHKHYVAFR-YADP-LTEETLDQIEKD----GA-E-RVVIFSQYPQDGAERVVI-FSQYPQYSCATSGSSLNAIYTHLN 233 (1041)
Q Consensus 163 ~~~~v~~a~r-y~~P-~I~~~l~~l~~~----g~-~-~illfSahP~~~~~~iv~-gd~YP~~s~~Tt~s~~~~v~e~L~ 233 (1041)
..++.+... |.+| +|+...+.+.+. +. + ..|+|||| |+|.+++. ||+|+.+|..|+. ++++.++
T Consensus 153 -~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfSaH--glP~~~~~~Gd~Y~~~~~~ta~----~l~~~l~ 225 (322)
T TIGR00109 153 -RPTISVIESWYDNPKYIKALADSIKETLASFPEPDNAVLLFSAH--GLPQSYVDEGDPYPAECEATTR----LIAEKLG 225 (322)
T ss_pred -CCeEEEeCccccCcHHHHHHHHHHHHHHHhcCCcCCcEEEEeCC--CCchhHhhCCCChHHHHHHHHH----HHHHHcC
Confidence 023444444 6688 777777766422 21 2 36889998 88888777 9999999999986 4555555
Q ss_pred hcCCCCCcceeeecCCCCChhHHHHHHHHHHHHHhhCCCCCCCceEEE-EeeecchhhhHHHHHHHH---------hhcc
Q psy15564 234 KKGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPVEVQKDVIIL-FSAHSLPLRALVTLFARI---------TKLG 303 (1041)
Q Consensus 234 ~~~~~~~l~~qsI~r~g~~pwl~pat~d~I~~~l~~~~~~g~~~v~lV-~SfHS~~~~tl~eL~~~i---------tkl~ 303 (1041)
. ..++.++||| ++|+.||+.|++.+.|++ +.+ +|.++++|+ ++|.++|+||++|++.+. ++|.
T Consensus 226 ~-~~~~~~~fQS--~~g~~~Wl~P~~~~~l~~-l~~---~G~k~V~vvP~gFv~D~lETl~ei~~e~~~~~~~~G~~~~~ 298 (322)
T TIGR00109 226 F-PNEYRLTWQS--RVGPEPWLGPYTEELLEK-LGE---QGVQHIVVVPIGFTADHLETLYEIDEEYREVAEDAGGDKYQ 298 (322)
T ss_pred C-CCCeEEEEeC--CCCCCCcCCCCHHHHHHH-HHH---cCCceEEEECCcccccchhHHHhhhHHHHHHHHHcCCCeEE
Confidence 2 1245689999 999999999999999965 333 244578888 999999999999997443 4588
Q ss_pred cccCCCCCHHHHHHHHHHH-HHH
Q psy15564 304 WFDSEKDEFVFRNVIQDVS-NFL 325 (1041)
Q Consensus 304 ~~~~ln~~~~Fi~~l~~l~-~~l 325 (1041)
++||+|++|.|+++|++++ +.+
T Consensus 299 ~vp~lN~~p~fi~~l~~~v~~~~ 321 (322)
T TIGR00109 299 RCPALNAKPEFIEAMATLVKKKL 321 (322)
T ss_pred ECCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999988 443
No 7
>PRK12435 ferrochelatase; Provisional
Probab=100.00 E-value=6.2e-36 Score=334.40 Aligned_cols=262 Identities=16% Similarity=0.176 Sum_probs=192.6
Q ss_pred CCceEEEEEecCCCCCcchhHHHHhhhcCccccccCCCCCCCchhHHHHHHhcCCCCChH----HHHHHHHhhcCCC---
Q psy15564 32 KPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPVQGITRPKTAILMLNMGGPTHTD----QVSEYLHRIMTDR--- 104 (1041)
Q Consensus 32 ~~k~aVlLlNlGGP~s~~~V~~FL~nlFsD~~II~~p~~~~l~~k~avly~~iGGpSpl~----~l~~fL~~~l~d~--- 104 (1041)
++|+||||||||||+++++|+|||+|+|.|| .|.+..+ .+++..|..|||+||+. ++.+.|++.+.+.
T Consensus 2 ~~~~avlll~~GgP~~~~~V~pfL~ni~~g~----~~~~~~l-~~~~~~Y~~iGG~SPL~~~T~~qa~~L~~~L~~~~~~ 76 (311)
T PRK12435 2 KKKIGLLVMAYGTPYKEEDIERYYTHIRHGR----KPSEEML-QDLKDRYEAIGGISPLAKITDEQAKALEKALNEVQDE 76 (311)
T ss_pred CCcEEEEEEeCCCCCCHHHHHHHHHHhcCCC----CCCHHHH-HHHHHHHHHhCCcChHHHHHHHHHHHHHHHHhhccCC
Confidence 5679999999999999999999999999997 2333333 46789999999999994 4455555555331
Q ss_pred -C--c-eeCCCccch-hhhhcccCChhhH--------HhhhccCCCChHHHHHHHHHHHHHHHhhhcCCCCCCceEEEEe
Q psy15564 105 -D--M-IQLPVQGKL-GPYIARRRTPEVQ--------KKYQEIGGGSPILKWTQLQGEKMANKLNSVCPEYGPHKHYVAF 171 (1041)
Q Consensus 105 -~--v-i~~py~~Pl-~~~I~~~r~~~~~--------~qYs~ittgSpl~~~t~~qa~~L~~~L~~~~~~~~~~~v~~a~ 171 (1041)
+ | +.|+||+|+ ...+...+..+++ ||||.+|+||....+.+. +.. .. ..++.+..
T Consensus 77 ~~~~V~~amry~~P~i~~~l~~l~~~g~~~iv~lpLyPqyS~~Tt~s~~~~~~~~----~~~-~~-------~~~~~~i~ 144 (311)
T PRK12435 77 VEFKLYLGLKHIEPFIEDAVEQMHNDGIEEAISIVLAPHYSTFSVKSYNKRAKEE----AEK-LG-------GPTITSIE 144 (311)
T ss_pred CCceEEEEecCCCCCHHHHHHHHHHcCCCeEEEEECCCccccccHHHHHHHHHHH----hcc-cC-------CCeEEEeC
Confidence 1 2 236899997 6777777766665 899999998754433321 111 11 12445554
Q ss_pred c-CCCc-cHHHHHHHHH----HcC----CcEEEEeecCCCCCCcceee-ccCchhHHHHhHHHHHHHHHHHHhhcCCCCC
Q psy15564 172 R-YADP-LTEETLDQIE----KDG----AERVVIFSQYPQDGAERVVI-FSQYPQYSCATSGSSLNAIYTHLNKKGSPSN 240 (1041)
Q Consensus 172 r-y~~P-~I~~~l~~l~----~~g----~~~illfSahP~~~~~~iv~-gd~YP~~s~~Tt~s~~~~v~e~L~~~~~~~~ 240 (1041)
+ |.+| ||++..+.++ +.+ .+..|+|||| |+|.+++. ||||+++|.+|+..+ ++.++.. .+.
T Consensus 145 ~~~~~p~yi~a~a~~I~~~l~~~~~~~~~~~~llfSaH--slP~~~i~~GDpY~~q~~~t~~~v----~~~l~~~--~~~ 216 (311)
T PRK12435 145 SWYDEPKFIQYWADQIKETFAQIPEEEREKAVLIVSAH--SLPEKIIAAGDPYPDQLEETADLI----AEQANVE--HYA 216 (311)
T ss_pred CccCChHHHHHHHHHHHHHHHHcCcccccceEEEEecC--CCchhHhhCCCCHHHHHHHHHHHH----HHHcCCC--CCe
Confidence 4 6788 8887777653 222 1235889998 88888776 999999999999644 4455433 356
Q ss_pred cceeeecCC-CCChhHHHHHHHHHHHHHhhCCCCCCCceEEE-EeeecchhhhHHHHHHHH--------hhcccccCCCC
Q psy15564 241 ISWSLIDRW-STHPLLCKVFAERIQEELKQFPVEVQKDVIIL-FSAHSLPLRALVTLFARI--------TKLGWFDSEKD 310 (1041)
Q Consensus 241 l~~qsI~r~-g~~pwl~pat~d~I~~~l~~~~~~g~~~v~lV-~SfHS~~~~tl~eL~~~i--------tkl~~~~~ln~ 310 (1041)
++||| ++ |+.||++|+|.++|++..++. |.++++|+ ++|+|||+|||+||+.|. -+|.++||+|+
T Consensus 217 l~yQS--r~~g~~~WL~P~t~d~l~~l~~~~---G~k~v~vvpigFvsDhlETl~Eldie~~e~a~~~G~~~~r~~~lN~ 291 (311)
T PRK12435 217 IGWQS--EGNTPDPWLGPDVQDLTRDLYEEH---GYKSFIYTPVGFVAEHLEVLYDNDYECKVVTDEIGAKYYRPEMPNA 291 (311)
T ss_pred Eeeec--CCCCCCCCCCCCHHHHHHHHHHhc---CCceEEEECCchhhhhHHHHHHHHHHHHHHHHHcCCcEEeccCCCC
Confidence 89999 96 799999999999996632221 44577777 999999999999997554 23679999999
Q ss_pred CHHHHHHHHHHHH
Q psy15564 311 EFVFRNVIQDVSN 323 (1041)
Q Consensus 311 ~~~Fi~~l~~l~~ 323 (1041)
+|.|+++|++++.
T Consensus 292 ~p~fi~~La~lv~ 304 (311)
T PRK12435 292 DPLFIDALADVVL 304 (311)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999883
No 8
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=100.00 E-value=1.1e-36 Score=341.88 Aligned_cols=264 Identities=21% Similarity=0.267 Sum_probs=187.8
Q ss_pred ceEEEEEecCCCCCcchhHHHHhhhcCccccccCC--CCCCC--------chhHHHHHHhcCCCCChH----HHHHHHHh
Q psy15564 34 KTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLP--VQGIT--------RPKTAILMLNMGGPTHTD----QVSEYLHR 99 (1041)
Q Consensus 34 k~aVlLlNlGGP~s~~~V~~FL~nlFsD~~II~~p--~~~~l--------~~k~avly~~iGGpSpl~----~l~~fL~~ 99 (1041)
|+||||+|+|||+++++|++||+++|+||+||++| +++++ .+|++..|..+||+||+. ++.+.|++
T Consensus 1 K~aVLL~n~G~P~s~~~v~~yL~~~l~d~~vi~lp~~~~~~L~~~I~~~R~~~~~~~Y~~ig~~SPL~~~t~~qa~~l~~ 80 (316)
T PF00762_consen 1 KTAVLLVNLGTPESPEDVRPYLREFLSDRRVIDLPWLWQPILAGIILPFRPKKSAERYQKIGGGSPLNEITRRQAEALQQ 80 (316)
T ss_dssp EEEEEEEE----SSGGGHHHHHHHHTTTTTTSHSTTTTHHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCCHHHHHHHHHHHhCCCCCCCCCchhHHHHHHHhhhhhHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999998 23333 689999999999999994 44555555
Q ss_pred hcCCC----Cce-eCCCccch-hhhhcccCChhhH--------HhhhccCCCChHHHHHHHHHHHHHHHhhhcCCCCCCc
Q psy15564 100 IMTDR----DMI-QLPVQGKL-GPYIARRRTPEVQ--------KKYQEIGGGSPILKWTQLQGEKMANKLNSVCPEYGPH 165 (1041)
Q Consensus 100 ~l~d~----~vi-~~py~~Pl-~~~I~~~r~~~~~--------~qYs~ittgSpl~~~t~~qa~~L~~~L~~~~~~~~~~ 165 (1041)
.+.+. +|. .|.||+|+ ...+..++..+++ |||+.+|+||.++.+.+...+ .- ...
T Consensus 81 ~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ivvlPLyPqyS~~ttgs~~~~~~~~~~~----~~-------~~~ 149 (316)
T PF00762_consen 81 RLDERGVDVEVYYAMRYGPPSIEDALEELKADGVDRIVVLPLYPQYSSSTTGSYLDEVERALKK----SR-------PNP 149 (316)
T ss_dssp HHHHH-EEEEEEEEESSSSSBHHHHHHHHHHTT-SEEEEEESSSS--TTTHHHHHHHHHHHHHH----TH-------SSS
T ss_pred HHHhcCCCeeEEEEeccCCCCHHHHHHHHHHcCCCeEEEEeCCCchhHhhHHHHHHHHHHHHHh----cC-------CCC
Confidence 55421 222 25799996 6777777666666 899999999999988886543 10 123
Q ss_pred eEEEEec-CCCc-cHHHHHHHHHHc------CCcEEEEeecCCCCCCccee-e-ccCchhHHHHhHHHHHHHHHHHHhhc
Q psy15564 166 KHYVAFR-YADP-LTEETLDQIEKD------GAERVVIFSQYPQDGAERVV-I-FSQYPQYSCATSGSSLNAIYTHLNKK 235 (1041)
Q Consensus 166 ~v~~a~r-y~~P-~I~~~l~~l~~~------g~~~illfSahP~~~~~~iv-~-gd~YP~~s~~Tt~s~~~~v~e~L~~~ 235 (1041)
++.+.-+ |.|| +|+...+.+.+. +....|+|||| |+|.+.+ . ||||+.+|..|+. ++++.++..
T Consensus 150 ~~~~i~~~~~~p~yi~a~~~~i~~~l~~~~~~~~~~llfSaH--glP~~~~~~~GdpY~~~~~~t~~----~i~~~l~~~ 223 (316)
T PF00762_consen 150 KVRFIPSFYDHPAYIEALAERIREALERFPRGEPDHLLFSAH--GLPQRYVEDKGDPYPAQCEETAR----LIAERLGLP 223 (316)
T ss_dssp EEEEE---TT-HHHHHHHHHHHHHHHTTS-HCCCEEEEEEEE----BHHHHTCCT-SHHHHHHHHHH----HHHHHTTTS
T ss_pred eEEEeCCccCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEccC--CCCccccccCCCChHHHHHHHHH----HHHHHcCCC
Confidence 5566555 7788 888877766432 22356889998 9999988 4 9999999999995 555566543
Q ss_pred CCCCCcceeeecCCCCChhHHHHHHHHHHHHHhhCCCCCCCceEEE-EeeecchhhhHHHHHHHH---------hhcccc
Q psy15564 236 GSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPVEVQKDVIIL-FSAHSLPLRALVTLFARI---------TKLGWF 305 (1041)
Q Consensus 236 ~~~~~l~~qsI~r~g~~pwl~pat~d~I~~~l~~~~~~g~~~v~lV-~SfHS~~~~tl~eL~~~i---------tkl~~~ 305 (1041)
. +.++||| ++|+.+|+.|+|.+.|++ +.+ +|.++|+++ ++|++||+|||+|++.++ ++|.++
T Consensus 224 ~--~~~~fQS--~~g~~~WL~P~~~~~l~~-l~~---~G~~~V~v~p~gFv~D~lETl~eidie~re~~~~~G~~~~~~i 295 (316)
T PF00762_consen 224 E--WRLAFQS--RFGPGEWLGPSTEDVLEE-LAK---EGVKRVVVVPPGFVSDCLETLYEIDIEYRELAEEAGGEEFVRI 295 (316)
T ss_dssp S--EEEEEES---SSSS-BSSSBHHHHHHH-HHH---CT-SEEEEEETT-SSSSHHHHCCCCCHHHHHHHHHTCCEEEE-
T ss_pred c--eEEEEEC--CCCCCCCccccHHHHHHH-HHh---cCCCeEEEECCccccccHhHHHHHHHHHHHHHHHcCCceEEEe
Confidence 2 5689999 999999999999999966 333 244578888 999999999999985332 678899
Q ss_pred cCCCCCHHHHHHHHHHH
Q psy15564 306 DSEKDEFVFRNVIQDVS 322 (1041)
Q Consensus 306 ~~ln~~~~Fi~~l~~l~ 322 (1041)
||+|+++.|+++|++++
T Consensus 296 p~lN~~~~fi~~La~~v 312 (316)
T PF00762_consen 296 PCLNDSPEFIEALADLV 312 (316)
T ss_dssp --STT-HHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999999988
No 9
>KOG1321|consensus
Probab=100.00 E-value=2.7e-34 Score=304.92 Aligned_cols=206 Identities=57% Similarity=1.018 Sum_probs=192.5
Q ss_pred chhHHHHHHhcCCCCChHHHHHHHHhhcCCCCceeCC--CccchhhhhcccCChhhHHhhhccCCCChHHHHHHHHHHHH
Q psy15564 74 RPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLP--VQGKLGPYIARRRTPEVQKKYQEIGGGSPILKWTQLQGEKM 151 (1041)
Q Consensus 74 ~~k~avly~~iGGpSpl~~l~~fL~~~l~d~~vi~~p--y~~Pl~~~I~~~r~~~~~~qYs~ittgSpl~~~t~~qa~~L 151 (1041)
++|+|++++|||||+.++++.+||.+++.|+++|.+| +..+++.+|+.+|+|+++++|+.||||||+..||+.|++.+
T Consensus 36 k~ktgilllNmGGP~~lddV~~FL~rLfaD~DiI~Lp~~~Q~~lakfIak~RtPKvqe~Y~~IGGGSPir~wT~~Q~~~m 115 (395)
T KOG1321|consen 36 KPKTGILLLNMGGPETLDDVQDFLYRLFADPDIIPLPAFLQKTLAKFIAKRRTPKVQEQYREIGGGSPIRKWTEYQAEEM 115 (395)
T ss_pred CCCceEEEEcCCCCcchhhHHHHHHHHhcCCCeeeCCHHHHhhHHHHHHHhcCchHHHHHHhccCCCchhHHHHHHHHHH
Confidence 4689999999999999999999999999999999998 78899999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCCceEEEEecCCCccHHHHHHHHHHcCCcEEEEeecCCCCCCcceeeccCchhHHHHhHHHHHHHHHHH
Q psy15564 152 ANKLNSVCPEYGPHKHYVAFRYADPLTEETLDQIEKDGAERVVIFSQYPQDGAERVVIFSQYPQYSCATSGSSLNAIYTH 231 (1041)
Q Consensus 152 ~~~L~~~~~~~~~~~v~~a~ry~~P~I~~~l~~l~~~g~~~illfSahP~~~~~~iv~gd~YP~~s~~Tt~s~~~~v~e~ 231 (1041)
.+.|++..++...+..|+||||+||++++++++++++|++|++ +++.||||+.+|+|+.+..+.+.
T Consensus 116 ~k~Ld~~~petaphk~YVgfRY~~PlTEea~~qikkd~v~r~V--------------afsqYPQyS~sTsGSSln~l~r~ 181 (395)
T KOG1321|consen 116 CKILDKKCPETAPHKPYVGFRYAHPLTEEALEQIKKDGVTRAV--------------AFSQYPQYSCSTSGSSLNELWRQ 181 (395)
T ss_pred HHHHHhcCcccCCccceeeeeecCcccHHHHHHHHhcCceeEE--------------eeccCCceeeecCcccHHHHHHH
Confidence 9999988887778999999999999999999999999988764 46899999999999999999888
Q ss_pred HhhcCCCCCcceeeecCCCCChhHHHHHHHHHHHHHhhCCCCCCCceEEEEeeecchhhhHH
Q psy15564 232 LNKKGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPVEVQKDVIILFSAHSLPLRALV 293 (1041)
Q Consensus 232 L~~~~~~~~l~~qsI~r~g~~pwl~pat~d~I~~~l~~~~~~g~~~v~lV~SfHS~~~~tl~ 293 (1041)
+.+.+....+.|..|+||+.++.|+.+++++|++.|+.++...|++|+++|||||+|...+.
T Consensus 182 ~r~~~~~~~~~wsiIdrW~t~~glIkafA~~I~keL~~F~~~~r~~VVIlFSAHslPms~Vn 243 (395)
T KOG1321|consen 182 FREDGYERDIKWSIIDRWPTREGLIKAFAENIEKELQTFPEPVRDDVVILFSAHSLPMSVVN 243 (395)
T ss_pred HHhcCcccCCceEeeccccccchHHHHHHHHHHHHHHhcCCcccccEEEEEecCCCcHHHHh
Confidence 88777777799999999999999999999999999999998777788888999999999884
No 10
>PRK00035 hemH ferrochelatase; Reviewed
Probab=99.97 E-value=2.3e-31 Score=302.79 Aligned_cols=270 Identities=20% Similarity=0.271 Sum_probs=203.3
Q ss_pred CCCceEEEEEecCCCCCcchhHHHHhhhcCccccccCC---CCCCC--------chhHHHHHHhcCCCCChH----HHHH
Q psy15564 31 SKPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLP---VQGIT--------RPKTAILMLNMGGPTHTD----QVSE 95 (1041)
Q Consensus 31 ~~~k~aVlLlNlGGP~s~~~V~~FL~nlFsD~~II~~p---~~~~l--------~~k~avly~~iGGpSpl~----~l~~ 95 (1041)
.++|+||||+|||||+++++|++||.|||+||+||++| +++++ .+|++..|..|||+||+. ++.+
T Consensus 2 ~~~k~~vll~n~G~P~~~~~v~~fl~~~~~d~~v~~~~~~~~~~~l~~~i~~~r~~~~~~~Y~~ig~gSPl~~~t~~q~~ 81 (333)
T PRK00035 2 AMPKDAVLLLNLGGPETPEDVRPFLKNFLSDRRVIDLPRPLWQPLLAGIILPERLPKVAKHYASIGGGSPLNVITRRQAE 81 (333)
T ss_pred CCCceEEEEEeCCCCCCHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHhhhhhHHHHHHHHHHcCCCChhHHHHHHHHH
Confidence 35789999999999999999999999999999999996 23322 679999999999999994 5566
Q ss_pred HHHhhcCC--CC--ce-eCCCccch-hhhhcccCChhhH--------HhhhccCCCChHHHHHHHHHHHHHHHhhhcCCC
Q psy15564 96 YLHRIMTD--RD--MI-QLPVQGKL-GPYIARRRTPEVQ--------KKYQEIGGGSPILKWTQLQGEKMANKLNSVCPE 161 (1041)
Q Consensus 96 fL~~~l~d--~~--vi-~~py~~Pl-~~~I~~~r~~~~~--------~qYs~ittgSpl~~~t~~qa~~L~~~L~~~~~~ 161 (1041)
.|++.+.+ .+ |. .|.|++|. .+.+......+++ |||+.+++||..+.+.+...+ ...
T Consensus 82 ~L~~~l~~~~~~~~V~~am~y~~P~i~eal~~l~~~G~~~IivlPL~p~~s~~t~gs~~~~i~~~~~~-~~~-------- 152 (333)
T PRK00035 82 ALQAELAARGPDLPVYLGMRYWNPSIEEALEALKADGVDRIVVLPLYPQYSYSTTASYFEDLARALAK-LRL-------- 152 (333)
T ss_pred HHHHHHhccCCCceEEEeecCCCCCHHHHHHHHHhcCCCEEEEEECCCccccccHHHHHHHHHHHHHh-cCC--------
Confidence 66665542 12 22 25789886 6777777766666 799999999998887765432 110
Q ss_pred CCCceEEEEec-CCCc-cHHHHHHHHHH----cC---CcEEEEeecCCCCCCcceee-ccCchhHHHHhHHHHHHHHHHH
Q psy15564 162 YGPHKHYVAFR-YADP-LTEETLDQIEK----DG---AERVVIFSQYPQDGAERVVI-FSQYPQYSCATSGSSLNAIYTH 231 (1041)
Q Consensus 162 ~~~~~v~~a~r-y~~P-~I~~~l~~l~~----~g---~~~illfSahP~~~~~~iv~-gd~YP~~s~~Tt~s~~~~v~e~ 231 (1041)
..++.++.. +.+| +++...+.+.+ .+ .+..|+||+| |+|++.+. ||+|+.+|..|+. .+++.
T Consensus 153 --~~~i~~i~~~~~~p~~i~~l~~~I~~~~~~~~~~~~~~~llfs~H--G~P~~~~~~gd~Y~~~~~~t~~----~l~~~ 224 (333)
T PRK00035 153 --QPEIRFIRSYYDHPGYIEALAESIREALAKHGEDPEPDRLLFSAH--GLPQRYIDKGDPYQQQCEETAR----LLAEA 224 (333)
T ss_pred --CCcEEEeCCccCCHHHHHHHHHHHHHHHHhcCcccCCcEEEEecC--CCchHHhhcCCChHHHHHHHHH----HHHHH
Confidence 134555555 5577 76666665542 22 1245889998 88888765 9999999999985 44455
Q ss_pred HhhcCCCCCcceeeecCCCCChhHHHHHHHHHHHHHhhCCCCCCCceEEE-EeeecchhhhHHHHHHHH---------hh
Q psy15564 232 LNKKGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPVEVQKDVIIL-FSAHSLPLRALVTLFARI---------TK 301 (1041)
Q Consensus 232 L~~~~~~~~l~~qsI~r~g~~pwl~pat~d~I~~~l~~~~~~g~~~v~lV-~SfHS~~~~tl~eL~~~i---------tk 301 (1041)
++.....+.++||| ++|+.+|+.|++.+.|++ +.+. |.++|+|+ ++|.++|+||++|++.+. ..
T Consensus 225 l~~~~~~~~~~fqs--~~g~~~Wl~P~~~~~l~~-l~~~---g~k~V~v~P~~Fv~D~lEtl~ei~~e~~~~~~~~G~~~ 298 (333)
T PRK00035 225 LGLPDEDYDLTYQS--RFGPEPWLEPYTDDTLEE-LAEK---GVKKVVVVPPGFVSDHLETLEEIDIEYREIAEEAGGEE 298 (333)
T ss_pred hCCCCCCeEEEeeC--CCCCCccCCCCHHHHHHH-HHHc---CCCeEEEECCeeeccchhHHHHHHHHHHHHHHHcCCce
Confidence 55211234689999 999999999999999965 3332 33578888 999999999999996443 35
Q ss_pred cccccCCCCCHHHHHHHHHHHH
Q psy15564 302 LGWFDSEKDEFVFRNVIQDVSN 323 (1041)
Q Consensus 302 l~~~~~ln~~~~Fi~~l~~l~~ 323 (1041)
+.++||+|+++.|++++.+.++
T Consensus 299 ~~~~~~ln~~~~~i~~l~~~v~ 320 (333)
T PRK00035 299 FRRIPCLNDSPEFIEALADLVR 320 (333)
T ss_pred EEECCCCCCCHHHHHHHHHHHH
Confidence 7799999999999999999874
No 11
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=99.97 E-value=4.1e-30 Score=283.35 Aligned_cols=227 Identities=34% Similarity=0.579 Sum_probs=193.2
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHhhcCCCCceeCC--CccchhhhhcccCChhhHHhhhccCCCChHHHHHHHHHHHHH
Q psy15564 75 PKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLP--VQGKLGPYIARRRTPEVQKKYQEIGGGSPILKWTQLQGEKMA 152 (1041)
Q Consensus 75 ~k~avly~~iGGpSpl~~l~~fL~~~l~d~~vi~~p--y~~Pl~~~I~~~r~~~~~~qYs~ittgSpl~~~t~~qa~~L~ 152 (1041)
+|+|++++|+|||+..+++++||.++++|++|+..| .|.|+..+|++.|.+++.++|+.+||+||++.+|++|+++|+
T Consensus 4 ~k~avLL~nlG~P~~~e~v~~yL~~~~~d~~v~~~~~~~~~~l~~~I~~~R~~~~~~~Y~~igg~sPL~~~T~~q~~~L~ 83 (320)
T COG0276 4 KKTAVLLLNLGGPETLEDVRPYLKNFLSDRRVIELPRPLWYPLAGIILPLRLKKVAKNYESIGGKSPLNVITRAQAAALE 83 (320)
T ss_pred CceEEEEEecCCCCChHHHHHHHHHHhcCCCCCCCchhhhhhhhhhhhhhccHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 578999999999999999999999999999999975 566799999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCCCceEEEEecCCCccHHHHHHHHHHcCCcEEEEeecCCCCCCcceeeccCchhHHHHhHHHHHHHHHHHH
Q psy15564 153 NKLNSVCPEYGPHKHYVAFRYADPLTEETLDQIEKDGAERVVIFSQYPQDGAERVVIFSQYPQYSCATSGSSLNAIYTHL 232 (1041)
Q Consensus 153 ~~L~~~~~~~~~~~v~~a~ry~~P~I~~~l~~l~~~g~~~illfSahP~~~~~~iv~gd~YP~~s~~Tt~s~~~~v~e~L 232 (1041)
+.++ +++++|++||||++|++++++++++++|++++| ++|+|||||.+||+++.+.+.+++
T Consensus 84 ~~L~-----~~~~~V~~amry~~P~i~~~v~~l~~~gv~~iv--------------~~pLyPqyS~sTt~s~~~~~~~al 144 (320)
T COG0276 84 ERLD-----LPDFKVYLAMRYGPPFIEEAVEELKKDGVERIV--------------VLPLYPQYSSSTTGSYVDELARAL 144 (320)
T ss_pred HHhC-----CCCccEEEeecCCCCcHHHHHHHHHHcCCCeEE--------------EEECCcccccccHHHHHHHHHHHH
Confidence 9885 336899999999999999999999999998764 479999999999999999999988
Q ss_pred hhcCCCCCcceeeecCCCCChhHHHHHHHHHHHHHhhCCCCCCCceEEEEeeecchhhhHHHHH-----HHH------hh
Q psy15564 233 NKKGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPVEVQKDVIILFSAHSLPLRALVTLF-----ARI------TK 301 (1041)
Q Consensus 233 ~~~~~~~~l~~qsI~r~g~~pwl~pat~d~I~~~l~~~~~~g~~~v~lV~SfHS~~~~tl~eL~-----~~i------tk 301 (1041)
.+.+ ..+.++.|++|+++|.|++++++.|++.+++.+. ++.+++|||||+|.+...+.+ ++. ++
T Consensus 145 ~~~~--~~~~i~~I~~~~~~p~yI~a~a~~I~~~~~~~~~---~~~~llfSaHglP~~~~~~GDpY~~q~~~t~~li~e~ 219 (320)
T COG0276 145 KELR--GQPKISTIPDYYDEPLYIEALADSIREKLAKHPR---DDDVLLFSAHGLPKRYIDEGDPYPQQCQETTRLIAEA 219 (320)
T ss_pred HhcC--CCCceEEecCccCChHHHHHHHHHHHHHHHhcCC---CCeEEEEecCCCchhhhhcCCchHHHHHHHHHHHHHH
Confidence 7654 2478999999999999999999999999988762 367899999999999886642 111 55
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHH
Q psy15564 302 LGWFDSEKDEFVFRNVIQDVSNFLQV 327 (1041)
Q Consensus 302 l~~~~~ln~~~~Fi~~l~~l~~~lQ~ 327 (1041)
+++-+ ......|++.... .+|||.
T Consensus 220 lg~~~-~~~~~~~QS~~G~-~~WL~P 243 (320)
T COG0276 220 LGLPE-EEYDLTFQSRFGP-EPWLQP 243 (320)
T ss_pred cCCCc-hheeEEeecCCCC-CCCCCC
Confidence 55422 1224566664444 568875
No 12
>PLN02449 ferrochelatase
Probab=99.96 E-value=3.2e-29 Score=290.37 Aligned_cols=200 Identities=37% Similarity=0.641 Sum_probs=175.6
Q ss_pred chhHHHHHHhcCCCCChHHHHHHHHhhcCCCCceeCCC---c--cchhhhhcccCChhhHHhhhccCCCChHHHHHHHHH
Q psy15564 74 RPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPV---Q--GKLGPYIARRRTPEVQKKYQEIGGGSPILKWTQLQG 148 (1041)
Q Consensus 74 ~~k~avly~~iGGpSpl~~l~~fL~~~l~d~~vi~~py---~--~Pl~~~I~~~r~~~~~~qYs~ittgSpl~~~t~~qa 148 (1041)
.+|+|++++|+|||+.+++|++||.++++|++||.+|. + ++++.+|+.+|++++.++|+.+|+|||++.+|+.|+
T Consensus 87 ~~k~gVLLlNlGgPes~~dV~pFL~nlfsD~~II~lP~~~~~~~~~La~~Ia~~R~~ks~~~Y~~IGGgSPL~~iT~~Qa 166 (485)
T PLN02449 87 EEKVGVLLLNLGGPETLDDVQPFLYNLFADPDIIRLPRLFRFLQKPLAQFISNLRAPKSKEGYASIGGGSPLRKITDEQA 166 (485)
T ss_pred CCceEEEEEeCCCCCChhHHHHHHHHhcCCCCeeeCchhhhHHHHHHHHHHhccCcHHHHHHHHHCCCCCchHHHHHHHH
Confidence 56789999999999999999999999999999999983 2 457899999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCceEEEEecCCCccHHHHHHHHHHcCCcEEEEeecCCCCCCcceeeccCchhHHHHhHHHHHHHH
Q psy15564 149 EKMANKLNSVCPEYGPHKHYVAFRYADPLTEETLDQIEKDGAERVVIFSQYPQDGAERVVIFSQYPQYSCATSGSSLNAI 228 (1041)
Q Consensus 149 ~~L~~~L~~~~~~~~~~~v~~a~ry~~P~I~~~l~~l~~~g~~~illfSahP~~~~~~iv~gd~YP~~s~~Tt~s~~~~v 228 (1041)
++|++.|... +.++++++|||||+|+|++++++++++|+++++ ++|+||||+.+|+|++.+.+
T Consensus 167 ~~Lq~~L~~~---~~~~~V~~aMRY~~P~iedal~~l~~~G~~~iV--------------vLPLYPQyS~sTtgSs~~~l 229 (485)
T PLN02449 167 EALAKALEAK---NLPAKVYVGMRYWHPFTEEAIDQIKADGITKLV--------------VLPLYPQFSISTSGSSLRLL 229 (485)
T ss_pred HHHHHHHhcc---CCCeEEEEhhhcCCCCHHHHHHHHHhcCCCeEE--------------EEECCcccccccHHHHHHHH
Confidence 9999988542 336899999999999999999999999988764 47999999999999999998
Q ss_pred HHHHhhcCCCCCcceeeecCCCCChhHHHHHHHHHHHHHhhCCCCCCCceEEEEeeecchhhhH
Q psy15564 229 YTHLNKKGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPVEVQKDVIILFSAHSLPLRAL 292 (1041)
Q Consensus 229 ~e~L~~~~~~~~l~~qsI~r~g~~pwl~pat~d~I~~~l~~~~~~g~~~v~lV~SfHS~~~~tl 292 (1041)
++..++......+.+..|++|+.+|.|+.++++.|++++++.+. .+++.|+|||||+|..++
T Consensus 230 ~~~~~~~~~~~~~~~~~I~~~~~~p~yI~A~a~~I~~~l~~~~~--~~~~~LlFSAHGlP~~~v 291 (485)
T PLN02449 230 ESIFREDEYLVNMQHTVIPSWYQREGYVKAMADLIKKELAKFSD--PEEVHIFFSAHGVPVSYV 291 (485)
T ss_pred HHHHhhcccccCCeeEEeccccCChHHHHHHHHHHHHHHHhccC--cCCcEEEEecCCChhhhh
Confidence 88776543222357899999999999999999999999977643 235789999999999888
No 13
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=99.95 E-value=1.8e-27 Score=268.70 Aligned_cols=199 Identities=36% Similarity=0.664 Sum_probs=174.7
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHhhcCCCCceeCC--Ccc-chhhhhcccCChhhHHhhhccCCCChHHHHHHHHHHHH
Q psy15564 75 PKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLP--VQG-KLGPYIARRRTPEVQKKYQEIGGGSPILKWTQLQGEKM 151 (1041)
Q Consensus 75 ~k~avly~~iGGpSpl~~l~~fL~~~l~d~~vi~~p--y~~-Pl~~~I~~~r~~~~~~qYs~ittgSpl~~~t~~qa~~L 151 (1041)
+|+|++++|+|||++.++|++||.++++|++|+++| .|. ++..+|+.+|.+++.++|+.+|+|||++.+|+.|+++|
T Consensus 4 ~k~~VlL~n~G~P~~~~~v~~yL~~~~~D~~vi~~p~~~~~~~l~~~I~~~R~~k~~~~Y~~igg~SPl~~~t~~q~~~l 83 (322)
T TIGR00109 4 KKTGVLLMNLGGPDKLEEVERFLKQLFADPRIIDISRAKWRKPLAKMILPLRSPKIAKNYEAIGGGSPLLQITEQQAHAL 83 (322)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHcCCcchhcCCccccccchHHHHHhhccHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 468999999999999999999999999999999998 454 56899999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCCceEEEEecCCCccHHHHHHHHHHcCCcEEEEeecCCCCCCcceeeccCchhHHHHhHHHHHHHHHHH
Q psy15564 152 ANKLNSVCPEYGPHKHYVAFRYADPLTEETLDQIEKDGAERVVIFSQYPQDGAERVVIFSQYPQYSCATSGSSLNAIYTH 231 (1041)
Q Consensus 152 ~~~L~~~~~~~~~~~v~~a~ry~~P~I~~~l~~l~~~g~~~illfSahP~~~~~~iv~gd~YP~~s~~Tt~s~~~~v~e~ 231 (1041)
++.+.+. .+++|++||||++|+|+++++++.++|+++++ ++|+|||||..|++++.+.+.+.
T Consensus 84 ~~~l~~~----~~~~V~~amry~~P~i~~~l~~l~~~G~~~iv--------------~lPL~PqyS~~t~gs~~~~~~~~ 145 (322)
T TIGR00109 84 EKRLPNE----IDFKVYIAMRYGEPFTEEAVKELLKDGVERAV--------------VLPLYPHFSSSTTGSSFNELAEA 145 (322)
T ss_pred HHHhccC----CCceEEEeeccCCCCHHHHHHHHHhcCCCeEE--------------EEeCCcccccccHHHHHHHHHHH
Confidence 9988531 35789999999999999999999999998764 47999999999999999999888
Q ss_pred HhhcCCCCCcceeeecCCCCChhHHHHHHHHHHHHHhhCCCCCCCceEEEEeeecchhhhHHH
Q psy15564 232 LNKKGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPVEVQKDVIILFSAHSLPLRALVT 294 (1041)
Q Consensus 232 L~~~~~~~~l~~qsI~r~g~~pwl~pat~d~I~~~l~~~~~~g~~~v~lV~SfHS~~~~tl~e 294 (1041)
+++.+.. .+.++.|++|+.+|.|+.++++.|++++++.+.. ++++|+|||||+|...+..
T Consensus 146 l~~~~~~-~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~~~--~~~~llfSaHglP~~~~~~ 205 (322)
T TIGR00109 146 LKKLRSL-RPTISVIESWYDNPKYIKALADSIKETLASFPEP--DNAVLLFSAHGLPQSYVDE 205 (322)
T ss_pred HHhcccC-CCeEEEeCccccCcHHHHHHHHHHHHHHHhcCCc--CCcEEEEeCCCCchhHhhC
Confidence 8765421 1468889999999999999999999998776432 3568899999999888743
No 14
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=99.94 E-value=7.9e-28 Score=270.28 Aligned_cols=196 Identities=37% Similarity=0.630 Sum_probs=160.5
Q ss_pred hHHHHHHhcCCCCChHHHHHHHHhhcCCCCceeCC--CccchhhhhcccCChhhHHhhhccCCCChHHHHHHHHHHHHHH
Q psy15564 76 KTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLP--VQGKLGPYIARRRTPEVQKKYQEIGGGSPILKWTQLQGEKMAN 153 (1041)
Q Consensus 76 k~avly~~iGGpSpl~~l~~fL~~~l~d~~vi~~p--y~~Pl~~~I~~~r~~~~~~qYs~ittgSpl~~~t~~qa~~L~~ 153 (1041)
|+|++++|+|||+.++++++||.++++|++|+++| .++++..+|+..|.+++.++|+.+++|||++.+|+.|++++++
T Consensus 1 K~aVLL~n~G~P~s~~~v~~yL~~~l~d~~vi~lp~~~~~~L~~~I~~~R~~~~~~~Y~~ig~~SPL~~~t~~qa~~l~~ 80 (316)
T PF00762_consen 1 KTAVLLVNLGTPESPEDVRPYLREFLSDRRVIDLPWLWQPILAGIILPFRPKKSAERYQKIGGGSPLNEITRRQAEALQQ 80 (316)
T ss_dssp EEEEEEEE----SSGGGHHHHHHHHTTTTTTSHSTTTTHHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCCHHHHHHHHHHHhCCCCCCCCCchhHHHHHHHhhhhhHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999998 2345799999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCCceEEEEecCCCccHHHHHHHHHHcCCcEEEEeecCCCCCCcceeeccCchhHHHHhHHHHHHHHHHHHh
Q psy15564 154 KLNSVCPEYGPHKHYVAFRYADPLTEETLDQIEKDGAERVVIFSQYPQDGAERVVIFSQYPQYSCATSGSSLNAIYTHLN 233 (1041)
Q Consensus 154 ~L~~~~~~~~~~~v~~a~ry~~P~I~~~l~~l~~~g~~~illfSahP~~~~~~iv~gd~YP~~s~~Tt~s~~~~v~e~L~ 233 (1041)
.+++.. .+++|+.||||++|+|++++++++++|+++++ ++|+||||+.+|||++.+.+.+.+.
T Consensus 81 ~L~~~~---~~~~V~~amry~~P~i~~~l~~l~~~g~~~iv--------------vlPLyPqyS~~ttgs~~~~~~~~~~ 143 (316)
T PF00762_consen 81 RLDERG---VDVEVYYAMRYGPPSIEDALEELKADGVDRIV--------------VLPLYPQYSSSTTGSYLDEVERALK 143 (316)
T ss_dssp HHHHH----EEEEEEEEESSSSSBHHHHHHHHHHTT-SEEE--------------EEESSSS--TTTHHHHHHHHHHHHH
T ss_pred HHHhcC---CCeeEEEEeccCCCCHHHHHHHHHHcCCCeEE--------------EEeCCCchhHhhHHHHHHHHHHHHH
Confidence 997532 35799999999999999999999999998764 4799999999999999999999887
Q ss_pred hcCCCCCcceeeecCCCCChhHHHHHHHHHHHHHhhCCCCCCCceEEEEeeecchhhhH
Q psy15564 234 KKGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPVEVQKDVIILFSAHSLPLRAL 292 (1041)
Q Consensus 234 ~~~~~~~l~~qsI~r~g~~pwl~pat~d~I~~~l~~~~~~g~~~v~lV~SfHS~~~~tl 292 (1041)
+.+. .+.++.|++|+.+|.|+.++++.|++++++.+. + +...|||||||+|...+
T Consensus 144 ~~~~--~~~~~~i~~~~~~p~yi~a~~~~i~~~l~~~~~-~-~~~~llfSaHglP~~~~ 198 (316)
T PF00762_consen 144 KSRP--NPKVRFIPSFYDHPAYIEALAERIREALERFPR-G-EPDHLLFSAHGLPQRYV 198 (316)
T ss_dssp HTHS--SSEEEEE---TT-HHHHHHHHHHHHHHHTTS-H-C-CCEEEEEEEE--BHHHH
T ss_pred hcCC--CCeEEEeCCccCCHHHHHHHHHHHHHHHHhcCC-C-CCCEEEEccCCCCcccc
Confidence 7433 367899999999999999999999999987642 1 24689999999999888
No 15
>PRK12435 ferrochelatase; Provisional
Probab=99.93 E-value=8e-26 Score=253.17 Aligned_cols=189 Identities=25% Similarity=0.459 Sum_probs=156.2
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHhhcCCCCceeCCCccchhhhhcccCChhhHHhhhccCCCChHHHHHHHHHHHHHHH
Q psy15564 75 PKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPVQGKLGPYIARRRTPEVQKKYQEIGGGSPILKWTQLQGEKMANK 154 (1041)
Q Consensus 75 ~k~avly~~iGGpSpl~~l~~fL~~~l~d~~vi~~py~~Pl~~~I~~~r~~~~~~qYs~ittgSpl~~~t~~qa~~L~~~ 154 (1041)
+|+|++++|||||+.+++|.+||.+++.|+. |....+ .++.++|+.+|||||++.+|+.|+++|++.
T Consensus 3 ~~~avlll~~GgP~~~~~V~pfL~ni~~g~~--------~~~~~l-----~~~~~~Y~~iGG~SPL~~~T~~qa~~L~~~ 69 (311)
T PRK12435 3 KKIGLLVMAYGTPYKEEDIERYYTHIRHGRK--------PSEEML-----QDLKDRYEAIGGISPLAKITDEQAKALEKA 69 (311)
T ss_pred CcEEEEEEeCCCCCCHHHHHHHHHHhcCCCC--------CCHHHH-----HHHHHHHHHhCCcChHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999887751 111222 456899999999999999999999999999
Q ss_pred hhhcCCCCCCceEEEEecCCCccHHHHHHHHHHcCCcEEEEeecCCCCCCcceeeccCchhHHHHhHHHHHHHHHHHHhh
Q psy15564 155 LNSVCPEYGPHKHYVAFRYADPLTEETLDQIEKDGAERVVIFSQYPQDGAERVVIFSQYPQYSCATSGSSLNAIYTHLNK 234 (1041)
Q Consensus 155 L~~~~~~~~~~~v~~a~ry~~P~I~~~l~~l~~~g~~~illfSahP~~~~~~iv~gd~YP~~s~~Tt~s~~~~v~e~L~~ 234 (1041)
|++..+ ..++++++|||||+|++++++++++++|+++++ ++|+|||||.+|++++.+.+.+.+++
T Consensus 70 L~~~~~-~~~~~V~~amry~~P~i~~~l~~l~~~g~~~iv--------------~lpLyPqyS~~Tt~s~~~~~~~~~~~ 134 (311)
T PRK12435 70 LNEVQD-EVEFKLYLGLKHIEPFIEDAVEQMHNDGIEEAI--------------SIVLAPHYSTFSVKSYNKRAKEEAEK 134 (311)
T ss_pred HhhccC-CCCceEEEEecCCCCCHHHHHHHHHHcCCCeEE--------------EEECCCccccccHHHHHHHHHHHhcc
Confidence 864211 125799999999999999999999999998764 46999999999999988777665544
Q ss_pred cCCCCCcceeeecCCCCChhHHHHHHHHHHHHHhhCCCCCCCceEEEEeeecchhhhHHH
Q psy15564 235 KGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPVEVQKDVIILFSAHSLPLRALVT 294 (1041)
Q Consensus 235 ~~~~~~l~~qsI~r~g~~pwl~pat~d~I~~~l~~~~~~g~~~v~lV~SfHS~~~~tl~e 294 (1041)
. . .+.+..|++|+.+|.|+.++++.|++++++.+..+++++.|+|||||+|.+.+.+
T Consensus 135 ~-~--~~~~~~i~~~~~~p~yi~a~a~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i~~ 191 (311)
T PRK12435 135 L-G--GPTITSIESWYDEPKFIQYWADQIKETFAQIPEEEREKAVLIVSAHSLPEKIIAA 191 (311)
T ss_pred c-C--CCeEEEeCCccCChHHHHHHHHHHHHHHHHcCcccccceEEEEecCCCchhHhhC
Confidence 2 2 3578899999999999999999999999876543334678999999999998843
No 16
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=99.92 E-value=6.7e-25 Score=223.83 Aligned_cols=159 Identities=36% Similarity=0.645 Sum_probs=134.7
Q ss_pred eEEEEEecCCCCCcchhHHHHhhhcCccccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHHHhhcCCCCceeCCCccc
Q psy15564 35 TAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPVQGITRPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPVQGK 114 (1041)
Q Consensus 35 ~aVlLlNlGGP~s~~~V~~FL~nlFsD~~II~~p~~~~l~~k~avly~~iGGpSpl~~l~~fL~~~l~d~~vi~~py~~P 114 (1041)
+||||+|||||+++++|++||.|+|+|++||++|.. + .+.
T Consensus 1 ~~VLL~n~G~P~~~~~v~~yL~~~~~d~~vi~~p~~-------------------~---~~~------------------ 40 (159)
T cd03411 1 TAVLLVNLGGPESLEDVRPFLKNFLSDRRVIELPRP-------------------L---RPI------------------ 40 (159)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHcCCCCcccCCHH-------------------H---HHH------------------
Confidence 599999999999999999999999999999877421 0 111
Q ss_pred hhhhhcccCChhhHHhhhccCCCChHHHHHHHHHHHHHHHhhhcCCCCCCceEEEEecCCCccHHHHHHHHHHcCCcEEE
Q psy15564 115 LGPYIARRRTPEVQKKYQEIGGGSPILKWTQLQGEKMANKLNSVCPEYGPHKHYVAFRYADPLTEETLDQIEKDGAERVV 194 (1041)
Q Consensus 115 l~~~I~~~r~~~~~~qYs~ittgSpl~~~t~~qa~~L~~~L~~~~~~~~~~~v~~a~ry~~P~I~~~l~~l~~~g~~~il 194 (1041)
+..+|+.+|.+++.++|+.+|+|||++.+|+.|++++++.+++. +.++.++++|+|++|+|+++++++.++|+++++
T Consensus 41 l~~~I~~~r~~k~~~~Y~~ig~~SPL~~~t~~q~~~l~~~L~~~---~~~~~v~~amry~~P~i~~~l~~l~~~g~~~ii 117 (159)
T cd03411 41 LAGIILPRRPPKVAKNYKKIGGGSPLNEITRAQAEALEKALDER---GIDVKVYLAMRYGPPSIEEALEELKADGVDRIV 117 (159)
T ss_pred HHHHhcccccHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhcc---CCCcEEEehHhcCCCCHHHHHHHHHHcCCCEEE
Confidence 23456678889999999999999999999999999999998642 235789999999999999999999999988764
Q ss_pred EeecCCCCCCcceeeccCchhHHHHhHHHHHHHHHHHHhhcCCCCCcceeeecCCCCC
Q psy15564 195 IFSQYPQDGAERVVIFSQYPQYSCATSGSSLNAIYTHLNKKGSPSNISWSLIDRWSTH 252 (1041)
Q Consensus 195 lfSahP~~~~~~iv~gd~YP~~s~~Tt~s~~~~v~e~L~~~~~~~~l~~qsI~r~g~~ 252 (1041)
++|+||||+.+||+++.+.+++.+++.++ ...+..|++|+.+
T Consensus 118 --------------vlPl~P~~S~~Tt~s~~~~~~~~~~~~~~--~~~~~~i~~~~~~ 159 (159)
T cd03411 118 --------------VLPLYPQYSASTTGSYLDEVERALKKLRP--APELRVIRSFYDH 159 (159)
T ss_pred --------------EEECCcccccccHHHHHHHHHHHHHhcCC--CCcEEEeCccccC
Confidence 47999999999999999999998876533 3568888899864
No 17
>KOG1410|consensus
Probab=99.91 E-value=4e-25 Score=252.37 Aligned_cols=120 Identities=65% Similarity=1.062 Sum_probs=111.6
Q ss_pred cCCCCCCcccccCcchhHHHHHHhhcCCchhhhhhHHHHHHHhhhhhcccCchHHHHHHHHHHHHHHHHhcCCCCCCCcc
Q psy15564 563 DQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRSLFSNAERARFLTQLVNGVKQILQNPQGLSDAN 642 (1041)
Q Consensus 563 ~q~p~sw~~~~~~~~~~~lff~~y~~~~~~ls~~~l~clv~~~s~rrs~f~~de~~~~l~~l~~g~~~Il~n~~~~~~~~ 642 (1041)
+|||++||++|.|++++++||++|+.+++.+|..+++||||+||+|||+|++.||++|+.++++|+++|+.|.+|++|++
T Consensus 241 VQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~il~np~~LsD~~ 320 (1082)
T KOG1410|consen 241 VQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRILENPQGLSDPA 320 (1082)
T ss_pred eecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCcCCCCcc
Confidence 79999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhccccccccccccccccccc-----------cCCCCCCCCCCC
Q psy15564 643 NYHEFCRLLARLKSNYQLVKPGCRRLSALQYLE-----------FPSEHFPFLGNN 687 (1041)
Q Consensus 643 ~~~~~~~Ll~~l~~~~~~~~~~~r~l~~~~~~~-----------h~~~~f~fL~~~ 687 (1041)
+||||||||+|+|+|||++ +|++.|.+- .+-.|+.|.+++
T Consensus 321 nyHeFCRllaRlktNYQL~-----ELv~v~~Y~e~irLiAeFTv~SLq~wefa~nS 371 (1082)
T KOG1410|consen 321 NYHEFCRLLARLKTNYQLG-----ELVKVECYPEVIRLIAEFTVTSLQHWEFAPNS 371 (1082)
T ss_pred hHHHHHHHHHHHHhhhhhH-----hhhccCCcHHHHHHHHHHHHHHHHhhhcccch
Confidence 9999999999999999998 889988766 233467776653
No 18
>PRK00035 hemH ferrochelatase; Reviewed
Probab=99.91 E-value=6.7e-24 Score=241.64 Aligned_cols=198 Identities=35% Similarity=0.576 Sum_probs=172.9
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHhhcCCCCceeCCC--ccc-hhhhhcccCChhhHHhhhccCCCChHHHHHHHHHHHH
Q psy15564 75 PKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPV--QGK-LGPYIARRRTPEVQKKYQEIGGGSPILKWTQLQGEKM 151 (1041)
Q Consensus 75 ~k~avly~~iGGpSpl~~l~~fL~~~l~d~~vi~~py--~~P-l~~~I~~~r~~~~~~qYs~ittgSpl~~~t~~qa~~L 151 (1041)
+|+|++++|+|||+..+++++||.++++|++++.+|. |.| +..+|++.|.+++.++|+.+|+|||+..+|++|++++
T Consensus 4 ~k~~vll~n~G~P~~~~~v~~fl~~~~~d~~v~~~~~~~~~~~l~~~i~~~r~~~~~~~Y~~ig~gSPl~~~t~~q~~~L 83 (333)
T PRK00035 4 PKDAVLLLNLGGPETPEDVRPFLKNFLSDRRVIDLPRPLWQPLLAGIILPERLPKVAKHYASIGGGSPLNVITRRQAEAL 83 (333)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHhhhhhHHHHHHHHHHcCCCChhHHHHHHHHHHH
Confidence 5789999999999999999999999999999999873 444 6899999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCCceEEEEecCCCccHHHHHHHHHHcCCcEEEEeecCCCCCCcceeeccCchhHHHHhHHHHHHHHHHH
Q psy15564 152 ANKLNSVCPEYGPHKHYVAFRYADPLTEETLDQIEKDGAERVVIFSQYPQDGAERVVIFSQYPQYSCATSGSSLNAIYTH 231 (1041)
Q Consensus 152 ~~~L~~~~~~~~~~~v~~a~ry~~P~I~~~l~~l~~~g~~~illfSahP~~~~~~iv~gd~YP~~s~~Tt~s~~~~v~e~ 231 (1041)
++.+... ..+++++++|+|++|+++++++++.++|+++|+ ++|+|||++..|++++.+.+.+.
T Consensus 84 ~~~l~~~---~~~~~V~~am~y~~P~i~eal~~l~~~G~~~Ii--------------vlPL~p~~s~~t~gs~~~~i~~~ 146 (333)
T PRK00035 84 QAELAAR---GPDLPVYLGMRYWNPSIEEALEALKADGVDRIV--------------VLPLYPQYSYSTTASYFEDLARA 146 (333)
T ss_pred HHHHhcc---CCCceEEEeecCCCCCHHHHHHHHHhcCCCEEE--------------EEECCCccccccHHHHHHHHHHH
Confidence 9988532 235789999999999999999999999998764 46999999999999999988888
Q ss_pred HhhcCCCCCcceeeecCCCCChhHHHHHHHHHHHHHhhCCCCCCCceEEEEeeecchhhhH
Q psy15564 232 LNKKGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPVEVQKDVIILFSAHSLPLRAL 292 (1041)
Q Consensus 232 L~~~~~~~~l~~qsI~r~g~~pwl~pat~d~I~~~l~~~~~~g~~~v~lV~SfHS~~~~tl 292 (1041)
+++.+. .+.+..++.||.+|.|+.++++.|+++++..+... ++..||||+||+|...+
T Consensus 147 ~~~~~~--~~~i~~i~~~~~~p~~i~~l~~~I~~~~~~~~~~~-~~~~llfs~HG~P~~~~ 204 (333)
T PRK00035 147 LAKLRL--QPEIRFIRSYYDHPGYIEALAESIREALAKHGEDP-EPDRLLFSAHGLPQRYI 204 (333)
T ss_pred HHhcCC--CCcEEEeCCccCCHHHHHHHHHHHHHHHHhcCccc-CCcEEEEecCCCchHHh
Confidence 876532 36788899999999999999999999887654321 35689999999998876
No 19
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=99.43 E-value=2.6e-13 Score=134.70 Aligned_cols=106 Identities=16% Similarity=0.126 Sum_probs=82.7
Q ss_pred EEEEeecCCCCCCcceee-ccCchhHHHHhHHHHHHHHHHHHhhcCCCCCcceeeecCCCCChhHHHHHHHHHHHHHhhC
Q psy15564 192 RVVIFSQYPQDGAERVVI-FSQYPQYSCATSGSSLNAIYTHLNKKGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQF 270 (1041)
Q Consensus 192 ~illfSahP~~~~~~iv~-gd~YP~~s~~Tt~s~~~~v~e~L~~~~~~~~l~~qsI~r~g~~pwl~pat~d~I~~~l~~~ 270 (1041)
..|+|||| |+|++.+. ||+|+++|.+|+. ++++.++.....+.++||| ++|+.||+.|++.+.|++..++
T Consensus 19 ~~llfsaH--giP~~~~~~gd~Y~~~~~~~~~----~v~~~l~~~~~~~~~~fqS--~~g~~~Wl~P~~~~~l~~l~~~- 89 (135)
T cd00419 19 DRLLFSAH--GLPVRDIKKGDPYPDQCEETAR----LVAERLGLPFDEYELAYQS--RFGPGEWLEPSTDDALEELAKE- 89 (135)
T ss_pred CEEEEEcC--CCHHHHhhCCCCHHHHHHHHHH----HHHHHhCCCCCCEEEEecC--CCCCCCCCCCCHHHHHHHHHHc-
Confidence 45889998 88888776 9999999999986 4445555212345689999 9999999999999999764332
Q ss_pred CCCCCCceEEE-EeeecchhhhHHHHHHHH---------hhcccccCCC
Q psy15564 271 PVEVQKDVIIL-FSAHSLPLRALVTLFARI---------TKLGWFDSEK 309 (1041)
Q Consensus 271 ~~~g~~~v~lV-~SfHS~~~~tl~eL~~~i---------tkl~~~~~ln 309 (1041)
|.++++++ ++|.++|+||++|++.++ .+|.++||+|
T Consensus 90 ---G~~~i~v~p~gF~~D~~Etl~di~~e~~~~~~~~G~~~~~rvp~lN 135 (135)
T cd00419 90 ---GVKNVVVVPIGFVSDHLETLYELDIEYRELAEEAGGENYRRVPCLN 135 (135)
T ss_pred ---CCCeEEEECCccccccHHHHHHHHHHHHHHHHHcCCceEEEcCCCC
Confidence 44577777 899999999999997555 3466888876
No 20
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=98.73 E-value=3.4e-07 Score=104.15 Aligned_cols=135 Identities=17% Similarity=0.303 Sum_probs=107.2
Q ss_pred ChHhHHHHHHHHHhhccchhhhhcchhhHHHHHHHHHHHHHhhHHHHhcCCHHHHHHHHHHHHHhcccCchhHhhhHHHH
Q psy15564 841 EALDNALKTFVKLLLSINQSDLLDYPKLSQTYYVLLECLAQDHMSFLASLEPTVFLYILSSISEGLTALDTMVCTGCCAT 920 (1041)
Q Consensus 841 ~~l~~al~~~~~l~l~IP~~dLl~yPKL~~~yf~lle~l~e~~~~~l~~L~~~~f~~ll~sl~~GL~s~d~~i~~~c~~~ 920 (1041)
+.+.......+.-.+.+...|+.+||+++.+||+|+..+.+.++..+.+||++.|..++.|+.-|++|.+.+|+..|+++
T Consensus 109 ~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~ 188 (319)
T PF08767_consen 109 PQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNI 188 (319)
T ss_dssp CCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 45667788888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCCCchhhHHHHHhhhChHHHHHHHHHHHHHHhhccCCchhcc-hhhhHHHhh
Q psy15564 921 LDHIVTYLFKQITNKGKKKSGRPGASPTGTDMFLQVLEVRPEILQQILSTVLNIIMFEDCRNQWSM-SRPLLGLIL 995 (1041)
Q Consensus 921 Ld~lat~~~k~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~~~ll~~~L~~l~n~ilfed~~~~ws~-Sr~Ll~LIl 995 (1041)
+..+++.+.+. . .+....+. .+.+..+|..+|.++.=.++...+.. +..|..||.
T Consensus 189 l~~ll~~~~~~-----~------------~~~~~~F~---~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 189 LLELLNNVSKT-----N------------PEFANQFY---QQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR 244 (319)
T ss_dssp HHHHHHHHHH------S------------HHHHHHHH---HHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-----C------------HHHHHHHH---HHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 99999888871 0 01112233 36677788888888776667666633 334555553
No 21
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=96.81 E-value=0.00081 Score=69.00 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=56.5
Q ss_pred chhHHHHHHhcCCCCChH----HHHHHHHhhcCCC---Ccee--CCCccch-hhhhcccCChhhH--------HhhhccC
Q psy15564 74 RPKTAILMLNMGGPTHTD----QVSEYLHRIMTDR---DMIQ--LPVQGKL-GPYIARRRTPEVQ--------KKYQEIG 135 (1041)
Q Consensus 74 ~~k~avly~~iGGpSpl~----~l~~fL~~~l~d~---~vi~--~py~~Pl-~~~I~~~r~~~~~--------~qYs~it 135 (1041)
.+|++..|..|||+||+. ++.+.|++.+.+. ..+. |.||+|. .+.|......+++ |||+.+|
T Consensus 50 ~~k~~~~Y~~ig~~SPL~~~t~~q~~~l~~~L~~~~~~~~v~~amry~~P~i~~~l~~l~~~g~~~iivlPl~P~~S~~T 129 (159)
T cd03411 50 PPKVAKNYKKIGGGSPLNEITRAQAEALEKALDERGIDVKVYLAMRYGPPSIEEALEELKADGVDRIVVLPLYPQYSAST 129 (159)
T ss_pred cHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhccCCCcEEEehHhcCCCCHHHHHHHHHHcCCCEEEEEECCccccccc
Confidence 589999999999999993 4555666655442 2232 5699996 6777777666655 8999999
Q ss_pred CCChHHHHHHHHH
Q psy15564 136 GGSPILKWTQLQG 148 (1041)
Q Consensus 136 tgSpl~~~t~~qa 148 (1041)
+||.++.+.+...
T Consensus 130 t~s~~~~~~~~~~ 142 (159)
T cd03411 130 TGSYLDEVERALK 142 (159)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 22
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=96.16 E-value=0.033 Score=52.08 Aligned_cols=72 Identities=26% Similarity=0.299 Sum_probs=51.2
Q ss_pred ChHHHHHHHHHHHHHHHhhhcCCCCCCceEEEEecCC-CccHHHHHHHHHHcCCcEEEEeecCCCCCCcceeeccCchhH
Q psy15564 138 SPILKWTQLQGEKMANKLNSVCPEYGPHKHYVAFRYA-DPLTEETLDQIEKDGAERVVIFSQYPQDGAERVVIFSQYPQY 216 (1041)
Q Consensus 138 Spl~~~t~~qa~~L~~~L~~~~~~~~~~~v~~a~ry~-~P~I~~~l~~l~~~g~~~illfSahP~~~~~~iv~gd~YP~~ 216 (1041)
|+.+...+.+++.+++.+. ..+++++|.+. +|.++++++++.+.|+++|++ .|+|++.
T Consensus 13 s~~~~~~~~~~~~l~~~~~-------~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvv--------------vPl~~~~ 71 (101)
T cd03409 13 DPYKKDIEAQAHNLAESLP-------DFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVI--------------VPLAPVS 71 (101)
T ss_pred ccHHHHHHHHHHHHHHHCC-------CCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEE--------------EeCcccc
Confidence 4778888888777766552 34789999988 999999999999999887654 5677774
Q ss_pred HHHhHHHHHHHHHH
Q psy15564 217 SCATSGSSLNAIYT 230 (1041)
Q Consensus 217 s~~Tt~s~~~~v~e 230 (1041)
...+...+...+.+
T Consensus 72 g~h~~~di~~~~~~ 85 (101)
T cd03409 72 GDEVFYDIDSEIGL 85 (101)
T ss_pred ChhhHHHHHHHHHH
Confidence 44443344444433
No 23
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=90.84 E-value=2.6 Score=40.56 Aligned_cols=107 Identities=23% Similarity=0.272 Sum_probs=62.7
Q ss_pred CCChHHHHHHHHHHHHHHHhhhcCCCCCCceEEEEec-CCCccHHHHHHHHHHcCCcEEEEeecCCCCCCcceeeccCch
Q psy15564 136 GGSPILKWTQLQGEKMANKLNSVCPEYGPHKHYVAFR-YADPLTEETLDQIEKDGAERVVIFSQYPQDGAERVVIFSQYP 214 (1041)
Q Consensus 136 tgSpl~~~t~~qa~~L~~~L~~~~~~~~~~~v~~a~r-y~~P~I~~~l~~l~~~g~~~illfSahP~~~~~~iv~gd~YP 214 (1041)
=||+.....+. ...+...+.+..+ ..+++.++- ...|.++++++++.+.|.+++++.|++ +++-+
T Consensus 8 HGS~~~~~~~~-~~~l~~~l~~~~~---~~~v~~afle~~~P~~~~~l~~l~~~g~~~i~vvP~f---------L~~G~- 73 (117)
T cd03414 8 RGSSDPDANAD-VAKIARLLEEGTG---FARVETAFAAATRPSLPEALERLRALGARRVVVLPYL---------LFTGV- 73 (117)
T ss_pred CCCCCHHHHHH-HHHHHHHHHHhcC---CCeEEEEEecCCCCCHHHHHHHHHHcCCCEEEEEech---------hcCCc-
Confidence 35554443332 2234444433221 235677654 569999999999998999998888775 11111
Q ss_pred hHHHHhHHHHHHHHHHHHhhcCCCCCcceeeecCCCCChhHHHHHHHHHHH
Q psy15564 215 QYSCATSGSSLNAIYTHLNKKGSPSNISWSLIDRWSTHPLLCKVFAERIQE 265 (1041)
Q Consensus 215 ~~s~~Tt~s~~~~v~e~L~~~~~~~~l~~qsI~r~g~~pwl~pat~d~I~~ 265 (1041)
+... +.+.+. ..... +...+..-+..|.+|.+...+.+++++
T Consensus 74 -h~~~----i~~~~~-~~~~~---~~~~i~~~~pLG~~~~l~~~l~~r~~~ 115 (117)
T cd03414 74 -LMDR----IEEQVA-ELAAE---PGIEFVLAPPLGPHPELAEALLERVRE 115 (117)
T ss_pred -hHHH----HHHHHH-HHHhC---CCceEEECCCCCCCHHHHHHHHHHHHh
Confidence 1111 112222 22221 124566667999999999888888865
No 24
>KOG1241|consensus
Probab=89.76 E-value=31 Score=43.32 Aligned_cols=276 Identities=16% Similarity=0.240 Sum_probs=158.4
Q ss_pred hhhHHHHHHHHHHHHHhccCcccHHHHHHHhchhhhcC--CchhHHHHHHHHHhhCCCchHHHHHHHHHHHHhhccc---
Q psy15564 693 EMRCRSMFYTSLGRLLMVDLGEDEDRFEAFMLPLTSNY--PVYTPIFLAAVERWYAEPEVTTPILKLFAELVQNRSQ--- 767 (1041)
Q Consensus 693 ~~~~Rt~fy~~L~~ll~~~~~e~~~~f~~fl~Pl~~~y--p~~~~vl~~~i~~~~~~p~vv~~iLkf~~Elv~nr~~--- 767 (1041)
+.+-|+.-+.+|.|+.++ .++||+| | ++.|++-.++|. .++++|...-.+|.+.+++-..-
T Consensus 230 d~~i~~aa~~ClvkIm~L--------yY~~m~~----yM~~alfaitl~amk--s~~deValQaiEFWsticeEEiD~~~ 295 (859)
T KOG1241|consen 230 DEEIQVAAFQCLVKIMSL--------YYEFMEP----YMEQALFAITLAAMK--SDNDEVALQAIEFWSTICEEEIDLAI 295 (859)
T ss_pred cHHHHHHHHHHHHHHHHH--------HHHHHHH----HHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788878999999865 3445554 2 256677666664 88999999999999976653211
Q ss_pred --cccccCCC-hhHHhHHHHHHHHHHHHhcccccccCCcchhhh--h-hhhhHHHHHHHHHHhHcCCCccccccccc---
Q psy15564 768 --RLQFDVSS-PNGILLFREASKIICSYGSRILSVEVPDDKLYS--H-KLKGISICFSMLKAALCGGYVNFGVFRLY--- 838 (1041)
Q Consensus 768 --RL~f~~ss-p~gilLFre~s~ii~~Y~~~il~~~~~~~~~y~--~-k~K~I~~~l~iL~~~Lsg~yvnFgvf~lY--- 838 (1041)
-=-+|... |.....=|...+-++----..+..+ ..+.|+ | --|--..||.++..+..-+.|| =|....
T Consensus 296 e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kq--de~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~-~Vl~Fiee~ 372 (859)
T KOG1241|consen 296 EYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQ--DEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP-HVLPFIEEN 372 (859)
T ss_pred HHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhC--CCCcccccCcHHHHHHHHHHHHHHHhcccchh-hhHHHHHHh
Confidence 00111222 2222222222222222211111111 112222 2 3478889999999998888887 343221
Q ss_pred ---CCChHhHHHHHHHHHhhccchhhhhcchhhHHHHHHHHHHHH------------------HhhHHHHhcCCHHHHHH
Q psy15564 839 ---GDEALDNALKTFVKLLLSINQSDLLDYPKLSQTYYVLLECLA------------------QDHMSFLASLEPTVFLY 897 (1041)
Q Consensus 839 ---gD~~l~~al~~~~~l~l~IP~~dLl~yPKL~~~yf~lle~l~------------------e~~~~~l~~L~~~~f~~ 897 (1041)
.|-.-.+|-++.+|-.+-=|..+-+. |+.-.+-=+++..++ +.-|+ +..+......
T Consensus 373 i~~pdwr~reaavmAFGSIl~gp~~~~Lt-~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e--~~~n~~~l~~ 449 (859)
T KOG1241|consen 373 IQNPDWRNREAAVMAFGSILEGPEPDKLT-PIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPE--AIINQELLQS 449 (859)
T ss_pred cCCcchhhhhHHHHHHHhhhcCCchhhhh-HHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchh--hcccHhhhhH
Confidence 34455578888888777666444322 222222222222222 11122 4557778888
Q ss_pred HHHHHHHhcccCchhHhhhHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchhhHHHHHhhhChHHHHHHHHHHHHHHhh
Q psy15564 898 ILSSISEGLTALDTMVCTGCCATLDHIVTYLFKQITNKGKKKSGRPGASPTGTDMFLQVLEVRPEILQQILSTVLNIIMF 977 (1041)
Q Consensus 898 ll~sl~~GL~s~d~~i~~~c~~~Ld~lat~~~k~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~~~ll~~~L~~l~n~ilf 977 (1041)
++.++..||.+ .+-|+..||-++-++|..+|+....+ |-+++.. ..|..++..++..-=-
T Consensus 450 ~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~--------~qt~~~t-----------~~y~~ii~~Ll~~tdr 509 (859)
T KOG1241|consen 450 KLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSN--------GQTDPAT-----------PFYEAIIGSLLKVTDR 509 (859)
T ss_pred HHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCC--------CCCCccc-----------hhHHHHHHHHHhhccc
Confidence 89999999998 66899999999999999999874332 1111111 2344444444443222
Q ss_pred cc---CCchhcchhhhHHHhhcCHHHHHHHHHHH
Q psy15564 978 ED---CRNQWSMSRPLLGLILLNEEYFNQLRENI 1008 (1041)
Q Consensus 978 ed---~~~~ws~Sr~Ll~LIl~~~~~f~~l~~~l 1008 (1041)
.| .+..-++-.+|-.+|.+.++.+...++++
T Consensus 510 ~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~ 543 (859)
T KOG1241|consen 510 ADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKL 543 (859)
T ss_pred cccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 22 11112666788889999888776665554
No 25
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=88.77 E-value=5.9 Score=39.20 Aligned_cols=112 Identities=14% Similarity=0.178 Sum_probs=64.6
Q ss_pred CCCChHHHHHHHHHHHHHHHhhhcCCCCCCceEEEEec-CCCccHHHHHHHHHHcCCcEEEEeecCCCCCCcceeeccCc
Q psy15564 135 GGGSPILKWTQLQGEKMANKLNSVCPEYGPHKHYVAFR-YADPLTEETLDQIEKDGAERVVIFSQYPQDGAERVVIFSQY 213 (1041)
Q Consensus 135 ttgSpl~~~t~~qa~~L~~~L~~~~~~~~~~~v~~a~r-y~~P~I~~~l~~l~~~g~~~illfSahP~~~~~~iv~gd~Y 213 (1041)
+=||...++.+... .+...+++.. ..++..++- +.+|.++++++++.+.|+++|++++.. ++.-+
T Consensus 7 gHGSR~~~~~~~~~-~la~~l~~~~----~~~v~~afle~~~P~l~~~l~~l~~~G~~~ivVvPlF---------L~~G~ 72 (125)
T cd03415 7 THGSRRNTFNEDME-EWAAYLERKL----GVPVYLTYNEYAEPNWRDLLNELLSEGYGHIIIALAF---------LGRGN 72 (125)
T ss_pred ecCCCChHHHHHHH-HHHHHHHhcc----CCceEEEEeecCCCCHHHHHHHHHHCCCCEEEEehhh---------ccCCc
Confidence 44777766666533 3555554321 234666543 789999999999999999988765543 11110
Q ss_pred hhHHHHhHHHHHHHHHHH-----HhhcCCCCCcceeeecCCCCChhHHHHHHHHHHH
Q psy15564 214 PQYSCATSGSSLNAIYTH-----LNKKGSPSNISWSLIDRWSTHPLLCKVFAERIQE 265 (1041)
Q Consensus 214 P~~s~~Tt~s~~~~v~e~-----L~~~~~~~~l~~qsI~r~g~~pwl~pat~d~I~~ 265 (1041)
++. .-+-+.+.+. .+.....+.+.+..-+..|++|-+.+...+.+.+
T Consensus 73 --Hv~---~DiP~~l~~~~~~~~~~~~~~~~~~~i~~~~pLG~~p~l~~~l~~r~~~ 124 (125)
T cd03415 73 --HVA---RDIMGELGVSRFYKWVMSKYGGKEILVYVTEPLADSPLVKLALFYRVKR 124 (125)
T ss_pred --chH---HHHHHHHHhhcccchhhhccCCCCceEEEeCCCCCCHHHHHHHHHHHHh
Confidence 111 1111222220 0110001235577777999999999999888754
No 26
>PLN02757 sirohydrochlorine ferrochelatase
Probab=86.42 E-value=10 Score=38.91 Aligned_cols=79 Identities=19% Similarity=0.330 Sum_probs=52.5
Q ss_pred CCCccHHHHHHHHHHcCCcEEEEeecCCCCCCcceee-ccCchhHHHHhHHHHHHHHHHHHhhcCCCCCcceeeecCCCC
Q psy15564 173 YADPLTEETLDQIEKDGAERVVIFSQYPQDGAERVVI-FSQYPQYSCATSGSSLNAIYTHLNKKGSPSNISWSLIDRWST 251 (1041)
Q Consensus 173 y~~P~I~~~l~~l~~~g~~~illfSahP~~~~~~iv~-gd~YP~~s~~Tt~s~~~~v~e~L~~~~~~~~l~~qsI~r~g~ 251 (1041)
..+|.++++++++.+.|.++|+++|.. +- |-..-.++.. .+ +.+... ++ .+.+..-+.+|+
T Consensus 55 ~~~Psl~eal~~l~~~g~~~vvVvP~F--------L~~G~H~~~DIp~-------~v-~~~~~~-~p-~~~i~~~~pLG~ 116 (154)
T PLN02757 55 LAEPSIKDAFGRCVEQGASRVIVSPFF--------LSPGRHWQEDIPA-------LT-AEAAKE-HP-GVKYLVTAPIGL 116 (154)
T ss_pred cCCCCHHHHHHHHHHCCCCEEEEEEhh--------hcCCcchHhHHHH-------HH-HHHHHH-CC-CcEEEECCCCCC
Confidence 789999999999988899988776653 00 1111111211 22 122221 12 356777779999
Q ss_pred ChhHHHHHHHHHHHHHhh
Q psy15564 252 HPLLCKVFAERIQEELKQ 269 (1041)
Q Consensus 252 ~pwl~pat~d~I~~~l~~ 269 (1041)
+|.+.+.+.+++++++..
T Consensus 117 ~p~l~~ll~~Ri~eal~~ 134 (154)
T PLN02757 117 HELMVDVVNDRIKYCLSH 134 (154)
T ss_pred CHHHHHHHHHHHHHHhhc
Confidence 999999999999988754
No 27
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=85.66 E-value=3.9 Score=40.90 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=50.8
Q ss_pred CCChHHHHHHHHHHHHHHHhhhcCCCCC-CceEEEE-ecCCCccHHHHHHHHHHcCCcEEEEeecCCCCCCcceeeccC-
Q psy15564 136 GGSPILKWTQLQGEKMANKLNSVCPEYG-PHKHYVA-FRYADPLTEETLDQIEKDGAERVVIFSQYPQDGAERVVIFSQ- 212 (1041)
Q Consensus 136 tgSpl~~~t~~qa~~L~~~L~~~~~~~~-~~~v~~a-~ry~~P~I~~~l~~l~~~g~~~illfSahP~~~~~~iv~gd~- 212 (1041)
.|.|....+++.++++++.+......|. .++...+ ..|..|+++++++++.+.|+++|++ .|+
T Consensus 35 ~gd~Y~~~~~~~~~~v~~~l~~~~~~~~~~fqS~~g~~~Wl~P~~~~~l~~l~~~G~~~i~v--------------~p~g 100 (135)
T cd00419 35 KGDPYPDQCEETARLVAERLGLPFDEYELAYQSRFGPGEWLEPSTDDALEELAKEGVKNVVV--------------VPIG 100 (135)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCCCCCCCCCHHHHHHHHHHcCCCeEEE--------------ECCc
Confidence 4789888888888888777742111110 1121111 2377999999999999999887754 454
Q ss_pred chhHHHHhHHHHHHHH
Q psy15564 213 YPQYSCATSGSSLNAI 228 (1041)
Q Consensus 213 YP~~s~~Tt~s~~~~v 228 (1041)
|...+-.|...+-...
T Consensus 101 F~~D~~Etl~di~~e~ 116 (135)
T cd00419 101 FVSDHLETLYELDIEY 116 (135)
T ss_pred cccccHHHHHHHHHHH
Confidence 7777777765443333
No 28
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=84.74 E-value=4.8 Score=39.46 Aligned_cols=114 Identities=14% Similarity=0.249 Sum_probs=62.9
Q ss_pred CCChHHHHHHHHHHHHHHHhhhcCCCCCCceEEEE-ecCCCccHHHHHHHHHHcCCcEEEEeecC--CCCCCcceeeccC
Q psy15564 136 GGSPILKWTQLQGEKMANKLNSVCPEYGPHKHYVA-FRYADPLTEETLDQIEKDGAERVVIFSQY--PQDGAERVVIFSQ 212 (1041)
Q Consensus 136 tgSpl~~~t~~qa~~L~~~L~~~~~~~~~~~v~~a-~ry~~P~I~~~l~~l~~~g~~~illfSah--P~~~~~~iv~gd~ 212 (1041)
=||+...+.+. ...+...+++.. +...++++ +.+..|.++++++++.+.|+++|+++|.+ +-.-.++ |
T Consensus 9 hGS~~~~~~~~-~~~~~~~l~~~~---~~~~v~~afle~~~P~l~~~l~~l~~~g~~~v~vvPlfl~~G~h~~~----d- 79 (126)
T PRK00923 9 HGSRLPYNKEV-VTKIAEKIKEKH---PFYIVEVGFMEFNEPTIPEALKKLIGTGADKIIVVPVFLAHGVHTKR----D- 79 (126)
T ss_pred CCCCChHHHHH-HHHHHHHHHHhC---CCCeEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEchhhccCccccc----c-
Confidence 35654444332 223444554322 22356666 45889999999999999999999888776 1111110 0
Q ss_pred chhHHHHhHHHHHHHHHHHHhhcCCCCCcceeeecCCCCChhHHHHHHHHHHH
Q psy15564 213 YPQYSCATSGSSLNAIYTHLNKKGSPSNISWSLIDRWSTHPLLCKVFAERIQE 265 (1041)
Q Consensus 213 YP~~s~~Tt~s~~~~v~e~L~~~~~~~~l~~qsI~r~g~~pwl~pat~d~I~~ 265 (1041)
=|...... ......++..+ +.+.+..-+..|.+|.+.+.+.+++++
T Consensus 80 ip~~~~~~-----~~~~~~~~~~~--~~~~i~~~~~lG~~p~l~~~~~~r~~e 125 (126)
T PRK00923 80 IPRILGLD-----EGEKEEIEEDG--KDVEIVYAEPLGADERIADIVLKRANE 125 (126)
T ss_pred cchhhhcc-----cccccchhhcC--CCeEEEEcCCCCCCHHHHHHHHHHHhh
Confidence 00000000 00000122211 234555667999999999999988854
No 29
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=80.07 E-value=48 Score=40.15 Aligned_cols=136 Identities=16% Similarity=0.272 Sum_probs=80.3
Q ss_pred CCchHHHHHHHHHHHHhhccccccccCCChhHHhHHHHHHHHHHHHhcccccccCCcchhhhhhhhhHHHHHHHHHHhHc
Q psy15564 747 EPEVTTPILKLFAELVQNRSQRLQFDVSSPNGILLFREASKIICSYGSRILSVEVPDDKLYSHKLKGISICFSMLKAALC 826 (1041)
Q Consensus 747 ~p~vv~~iLkf~~Elv~nr~~RL~f~~ssp~gilLFre~s~ii~~Y~~~il~~~~~~~~~y~~k~K~I~~~l~iL~~~Ls 826 (1041)
+......+|.|+.+++.....+++ ...-..+-+.++.+ |.- +. . -.+|..|++++..+++
T Consensus 147 ~~~~l~~ll~~l~nviKfn~~~l~----e~~i~~lv~~i~~i-C~~-------Ts-~-------~~di~~~L~vldaii~ 206 (464)
T PF11864_consen 147 EESNLSDLLQFLVNVIKFNFNYLD----EDEISSLVDQICTI-CKS-------TS-S-------EDDIEACLSVLDAIIT 206 (464)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHH-Hhc-------cC-c-------HHHHHHHHHHHHHHHH
Confidence 445677899999999987666665 33333343444333 211 11 1 1467899999999976
Q ss_pred CCCcccccccccCCChHhHHHHHHHHHhhccchhhhhcchhhHHHHHHHHHHHHHhhHHHHhcCCHHHHHHHHHHH--HH
Q psy15564 827 GGYVNFGVFRLYGDEALDNALKTFVKLLLSINQSDLLDYPKLSQTYYVLLECLAQDHMSFLASLEPTVFLYILSSI--SE 904 (1041)
Q Consensus 827 g~yvnFgvf~lYgD~~l~~al~~~~~l~l~IP~~dLl~yPKL~~~yf~lle~l~e~~~~~l~~L~~~~f~~ll~sl--~~ 904 (1041)
=++| .++++.....++....-+. ++++.....+.-|+..|.. ...+..++..+ ..
T Consensus 207 y~~i--------P~~sl~~~i~vLCsi~~~~---------~l~~~~w~~m~nL~~S~~g------~~~i~~L~~iL~~~~ 263 (464)
T PF11864_consen 207 YGDI--------PSESLSPCIEVLCSIVNSV---------SLCKPSWRTMRNLLKSHLG------HSAIRTLCDILRSPD 263 (464)
T ss_pred cCcC--------ChHHHHHHHHHHhhHhccc---------ccchhHHHHHHHHHcCccH------HHHHHHHHHHHcccC
Confidence 4443 3566767776666552222 8888889999999988875 33444444444 12
Q ss_pred hcccCchhHhhhHHHHHHHHH
Q psy15564 905 GLTALDTMVCTGCCATLDHIV 925 (1041)
Q Consensus 905 GL~s~d~~i~~~c~~~Ld~la 925 (1041)
+-..-+..+..++...+..+.
T Consensus 264 ~~~~~~~~~lRGAv~~l~~ll 284 (464)
T PF11864_consen 264 PQNKRDINVLRGAVFFLRMLL 284 (464)
T ss_pred ccccccHHHHhhHHHHHHHHH
Confidence 222234445555444444433
No 30
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=77.62 E-value=27 Score=42.85 Aligned_cols=67 Identities=18% Similarity=0.227 Sum_probs=59.7
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHhhHHHHhcCCHHHHHHHHHHHHHhcccCchhHhhhHHHHHHHHH
Q psy15564 859 QSDLLDYPKLSQTYYVLLECLAQDHMSFLASLEPTVFLYILSSISEGLTALDTMVCTGCCATLDHIV 925 (1041)
Q Consensus 859 ~~dLl~yPKL~~~yf~lle~l~e~~~~~l~~L~~~~f~~ll~sl~~GL~s~d~~i~~~c~~~Ld~la 925 (1041)
.-|+-+||...++||.|++.+-...-.-+.++|++.|..+..+|.-.+++..-+|+..++.++-.+.
T Consensus 841 ~kdf~EypEhr~~f~~Ll~~inl~sF~afl~~p~p~Fklv~nti~wsfkhi~RDv~~~gLnill~l~ 907 (1053)
T COG5101 841 VKDFDEYPEHRKNFLLLLENINLFSFSAFLSFPQPSFKLVYNTILWSFKHINRDVSDLGLNILLILF 907 (1053)
T ss_pred HhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCcHHHHHHHHHHHHHHHhccchHhhhhhHHHHHHH
Confidence 6788999999999999999998877666677999999999999999999998899998887776665
No 31
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=68.95 E-value=18 Score=35.68 Aligned_cols=60 Identities=18% Similarity=0.179 Sum_probs=40.7
Q ss_pred CCChHHHHHHHHHHHHHHHhhhcCCCCCCceEEEEec------------CCCccHHHHHHHHHHcCCcEEEEeecC
Q psy15564 136 GGSPILKWTQLQGEKMANKLNSVCPEYGPHKHYVAFR------------YADPLTEETLDQIEKDGAERVVIFSQY 199 (1041)
Q Consensus 136 tgSpl~~~t~~qa~~L~~~L~~~~~~~~~~~v~~a~r------------y~~P~I~~~l~~l~~~g~~~illfSah 199 (1041)
-||....+.+.. +.+.+.+++.. ++.+++.++- -..|.+.++++++.+.|+++|+|.|.|
T Consensus 8 fGS~~~~~~~~~-~~i~~~l~~~~---p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~ 79 (127)
T cd03412 8 FGTSYPTAEKTI-DAIEDKVRAAF---PDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLH 79 (127)
T ss_pred CCCCCHHHHHHH-HHHHHHHHHHC---CCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCe
Confidence 355554444432 23555555433 3556776643 237999999999999999999999998
No 32
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=68.75 E-value=45 Score=38.65 Aligned_cols=116 Identities=21% Similarity=0.275 Sum_probs=68.4
Q ss_pred CCCChHHHHHHHHHHHHHHHhhhcCCCCCCceEEEEec-CCCccHHHHHHHHHHcCCcEEEEeecCCCCCCcceeeccCc
Q psy15564 135 GGGSPILKWTQLQGEKMANKLNSVCPEYGPHKHYVAFR-YADPLTEETLDQIEKDGAERVVIFSQYPQDGAERVVIFSQY 213 (1041)
Q Consensus 135 ttgSpl~~~t~~qa~~L~~~L~~~~~~~~~~~v~~a~r-y~~P~I~~~l~~l~~~g~~~illfSahP~~~~~~iv~gd~Y 213 (1041)
+=||....+.+... .+...+++.. ..+++.++- +.+|.++++++++.+.|+++|+++++. +++-+
T Consensus 13 gHGSRdp~~~~~~~-~La~~l~~~~----~~~V~~aFLE~~ePsl~eal~~l~~~G~~~IvVvPlF---------L~~G~ 78 (335)
T PRK05782 13 GHGSRRETFNSDME-GMANYLKEKL----GVPIYLTYNEFAEPNWRSLLNEIIKEGYRRVIIALAF---------LGRGN 78 (335)
T ss_pred ecCCCChHHHHHHH-HHHHHHHhcc----CCceEEEEeccCCCCHHHHHHHHHHCCCCEEEEeccc---------ccCCc
Confidence 44777666666533 3555554322 235666543 889999999999999999988776643 11110
Q ss_pred hhHHHHhHHHHHHHHHH-HHh---hcCCC-CCcceeeecCCCCChhHHHHHHHHHHHHHhh
Q psy15564 214 PQYSCATSGSSLNAIYT-HLN---KKGSP-SNISWSLIDRWSTHPLLCKVFAERIQEELKQ 269 (1041)
Q Consensus 214 P~~s~~Tt~s~~~~v~e-~L~---~~~~~-~~l~~qsI~r~g~~pwl~pat~d~I~~~l~~ 269 (1041)
|+.. -+-+.+.+ .++ +...+ ..+.+..-+..|++|-+...+.+++++++..
T Consensus 79 --Hv~~---DIP~~L~~~~~~~~~~~~~~~~~i~i~l~~pLG~~p~l~~ll~~Rv~eal~~ 134 (335)
T PRK05782 79 --HVFR---DIMGELGVQRLNSWEVSKISGKEVEFYVTEPLSDSPLVGLALYYRLARALDA 134 (335)
T ss_pred --chhh---hHHHHHHHhhhcchhhhhcCCCceeEEECCCCCCChHHHHHHHHHHHHHhhc
Confidence 1111 01112221 111 00111 1345566669999999999999999887754
No 33
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=58.32 E-value=40 Score=31.45 Aligned_cols=34 Identities=32% Similarity=0.613 Sum_probs=27.9
Q ss_pred eEEEEe-cCCCccHHHHHHHHHHcCCcEEEEeecC
Q psy15564 166 KHYVAF-RYADPLTEETLDQIEKDGAERVVIFSQY 199 (1041)
Q Consensus 166 ~v~~a~-ry~~P~I~~~l~~l~~~g~~~illfSah 199 (1041)
.++.++ ....|.++++++++.+.|++++++.|.+
T Consensus 33 ~v~~afle~~~p~~~~~l~~l~~~g~~~v~vvPlf 67 (101)
T cd03416 33 EVELAFLELAEPSLAEALDELAAQGATRIVVVPLF 67 (101)
T ss_pred cEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEeeE
Confidence 566653 3669999999999999999999888876
No 34
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=57.44 E-value=25 Score=32.53 Aligned_cols=40 Identities=18% Similarity=0.033 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCCceEEEEeeecchhhhHHHHHHHH
Q psy15564 256 CKVFAERIQEELKQFPVEVQKDVIILFSAHSLPLRALVTLFARI 299 (1041)
Q Consensus 256 ~pat~d~I~~~l~~~~~~g~~~v~lV~SfHS~~~~tl~eL~~~i 299 (1041)
.|.+.+.+++..+. |.+++++++-|-....++..++..++
T Consensus 44 ~P~i~~~l~~l~~~----g~~~vvvvPl~~~~g~h~~~di~~~~ 83 (101)
T cd03409 44 GPDTEEAIRELAEE----GYQRVVIVPLAPVSGDEVFYDIDSEI 83 (101)
T ss_pred CCCHHHHHHHHHHc----CCCeEEEEeCccccChhhHHHHHHHH
Confidence 45566666442222 33477777554336666666665444
No 35
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=56.85 E-value=19 Score=33.85 Aligned_cols=80 Identities=28% Similarity=0.497 Sum_probs=45.9
Q ss_pred ceEEEEec-CCCccHHHHHHHHHHcCCcEEEEeecCCCCCCcceeeccCchhHHHHhHHHHHHHHHHHHhhcCCCCCcce
Q psy15564 165 HKHYVAFR-YADPLTEETLDQIEKDGAERVVIFSQYPQDGAERVVIFSQYPQYSCATSGSSLNAIYTHLNKKGSPSNISW 243 (1041)
Q Consensus 165 ~~v~~a~r-y~~P~I~~~l~~l~~~g~~~illfSahP~~~~~~iv~gd~YP~~s~~Tt~s~~~~v~e~L~~~~~~~~l~~ 243 (1041)
..+.+++- +.+|.++++++++.+.|.++|++.|.. +++ ...+..-+-+.+ +.++.. .+ .+.+
T Consensus 25 ~~v~~~fle~~~P~l~~~l~~l~~~g~~~ivvvP~f---------L~~-----G~h~~~DIp~~l-~~~~~~-~~-~~~v 87 (105)
T PF01903_consen 25 VPVEVAFLEFAEPSLEEALERLVAQGARRIVVVPYF---------LFP-----GYHVKRDIPEAL-AEARER-HP-GIEV 87 (105)
T ss_dssp SEEEEEESSCCCSCCHHCCHHHHCCTCSEEEEEEES---------SSS-----SHHHHCHHHHHH-CHHHHC-ST-TEEE
T ss_pred CeEEEEEEecCCCCHHHHHHHHHHcCCCeEEEEeee---------ecC-----ccchHhHHHHHH-HHHHhh-CC-ceEE
Confidence 46777764 789999999999998899988776553 111 111111111222 222221 11 3456
Q ss_pred eeecCCCCChhHHHHHHH
Q psy15564 244 SLIDRWSTHPLLCKVFAE 261 (1041)
Q Consensus 244 qsI~r~g~~pwl~pat~d 261 (1041)
..-+..|++|.+...+++
T Consensus 88 ~~~~pLG~~p~l~~~l~e 105 (105)
T PF01903_consen 88 RVAPPLGPHPLLAELLAE 105 (105)
T ss_dssp EE---GGGSCCHHHHHH-
T ss_pred EECCCCCCCHHHHHHHhC
Confidence 666699999988876653
No 36
>PRK02395 hypothetical protein; Provisional
Probab=46.99 E-value=3e+02 Score=30.91 Aligned_cols=79 Identities=15% Similarity=0.080 Sum_probs=46.9
Q ss_pred cceeeecCCCCChhHHHHHHHHHHHHHhhCCCCCCCceEEEEeeecch-----hhhHHHHHHHHhh---ccc--ccCCCC
Q psy15564 241 ISWSLIDRWSTHPLLCKVFAERIQEELKQFPVEVQKDVIILFSAHSLP-----LRALVTLFARITK---LGW--FDSEKD 310 (1041)
Q Consensus 241 l~~qsI~r~g~~pwl~pat~d~I~~~l~~~~~~g~~~v~lV~SfHS~~-----~~tl~eL~~~itk---l~~--~~~ln~ 310 (1041)
..+..-+.+|.+|-+.....+.+++.....+. .++..+++..||-. .+.++++...+.+ +.+ +-.+..
T Consensus 101 ~~i~~~~plG~~p~l~~~l~~ri~e~~~~~~~--~~~~alvlvgHGS~~~~~a~~~~~~~a~~l~~~~~~~~V~~~fle~ 178 (279)
T PRK02395 101 KTVHYTGPVGTHPAMADVIAARARSVTGDPDV--GEDTALAVVGHGTERNENSAKAIYYHADRLRERGRFAEVEALFLDE 178 (279)
T ss_pred ceEEeCCCCCCChHHHHHHHHHHHHhhcCCCC--CcCceEEEEecCCCCchhHHHHHHHHHHHHHhhCCCCeEEEEeccC
Confidence 34555568999999999999998775543211 12456788889774 2335555544422 211 112234
Q ss_pred CHHHHHHHHHH
Q psy15564 311 EFVFRNVIQDV 321 (1041)
Q Consensus 311 ~~~Fi~~l~~l 321 (1041)
.|.+.+++..+
T Consensus 179 ~P~l~~~l~~l 189 (279)
T PRK02395 179 EPEVDDWPDLF 189 (279)
T ss_pred CCCHHHHHHHh
Confidence 67777776653
No 37
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=42.32 E-value=1.9e+02 Score=32.38 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=17.0
Q ss_pred ccHHHHHHHHHHcCCcEEEEeecC
Q psy15564 176 PLTEETLDQIEKDGAERVVIFSQY 199 (1041)
Q Consensus 176 P~I~~~l~~l~~~g~~~illfSah 199 (1041)
|...++++++.++|+++|+|-|.|
T Consensus 58 ~~~~eaL~~L~~~G~~~V~VQplh 81 (262)
T PF06180_consen 58 DSPEEALAKLADEGYTEVVVQPLH 81 (262)
T ss_dssp --HHHHHHHHHHCT--EEEEEE--
T ss_pred CCHHHHHHHHHHCCCCEEEEeecc
Confidence 477899999999999999999999
No 38
>KOG2022|consensus
Probab=34.41 E-value=1.2e+03 Score=30.61 Aligned_cols=181 Identities=16% Similarity=0.213 Sum_probs=109.7
Q ss_pred HHHHhchhhhcCCchhHHHHHHHHHhhCCCchHHHHHHHHHHHHhhccccccccCCChhHHhHHHHHHHHHHHHhccccc
Q psy15564 719 FEAFMLPLTSNYPVYTPIFLAAVERWYAEPEVTTPILKLFAELVQNRSQRLQFDVSSPNGILLFREASKIICSYGSRILS 798 (1041)
Q Consensus 719 f~~fl~Pl~~~yp~~~~vl~~~i~~~~~~p~vv~~iLkf~~Elv~nr~~RL~f~~ssp~gilLFre~s~ii~~Y~~~il~ 798 (1041)
|.+| |..+.-...+|++.+..+.|-++.+|+..+.+-|.-=+ +.-+=.|. .|+- -+++-++..|..+
T Consensus 691 ~qq~--~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v--~~~~~sF~--~p~l----~~l~~Fi~r~~~~--- 757 (982)
T KOG2022|consen 691 FQQF--PILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGV--RSLLTSFP--EPML----PSLCPFIVRFLTS--- 757 (982)
T ss_pred cccC--CHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhcc--ccccccch--hhhH----HHHHHHHHHhccc---
Confidence 5555 54444567789999999999999999998887765332 22211110 1111 1222222222211
Q ss_pred ccCCcchhhhhhhhhHHHHHHHHHHhHcCCCcccccccccCCChHhHHHHHHHHHhhccchhhhhcchhhHHHHHHHHHH
Q psy15564 799 VEVPDDKLYSHKLKGISICFSMLKAALCGGYVNFGVFRLYGDEALDNALKTFVKLLLSINQSDLLDYPKLSQTYYVLLEC 878 (1041)
Q Consensus 799 ~~~~~~~~y~~k~K~I~~~l~iL~~~Lsg~yvnFgvf~lYgD~~l~~al~~~~~l~l~IP~~dLl~yPKL~~~yf~lle~ 878 (1041)
.....+.+-..++.--| ++ +-.++....+-..++-+..+.....-+..-|.+...+|.++.-
T Consensus 758 --------------~~a~tl~l~~~~l~~~~---~~-~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ 819 (982)
T KOG2022|consen 758 --------------CLAVTLSLIAACLLAKS---TV-EQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQ 819 (982)
T ss_pred --------------hHHHHHHHHHHHHHhhh---cc-ccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHH
Confidence 01112222222222111 11 1123334444455555555555544478889999999999999
Q ss_pred HHHhhHHHHhcCCHHHHHHHH-HHHHHhcccCchhHhhhHHHHHHHHHHHHHHh
Q psy15564 879 LAQDHMSFLASLEPTVFLYIL-SSISEGLTALDTMVCTGCCATLDHIVTYLFKQ 931 (1041)
Q Consensus 879 l~e~~~~~l~~L~~~~f~~ll-~sl~~GL~s~d~~i~~~c~~~Ld~lat~~~k~ 931 (1041)
..+.+|.++...-.+ |..++ -.-..+|.+-.....+..+.++.+++++.+++
T Consensus 820 ilkk~P~~~~~~~~~-~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s~ 872 (982)
T KOG2022|consen 820 ILKKIPKFLEPSMLA-FTSLILICAFILLNSPEPTTIRAASQFLTALATYATSH 872 (982)
T ss_pred HHHhCcCccccchHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcccc
Confidence 999999987554444 44444 48888999999999999999999999877653
No 39
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=33.14 E-value=1.6e+02 Score=28.06 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=26.5
Q ss_pred eEEEEecCCCccHHHHHHHHHHcCCcEEEEeec
Q psy15564 166 KHYVAFRYADPLTEETLDQIEKDGAERVVIFSQ 198 (1041)
Q Consensus 166 ~v~~a~ry~~P~I~~~l~~l~~~g~~~illfSa 198 (1041)
.+++++-=..|.++++++++.+.|+++|+++|+
T Consensus 32 ~v~~~~lE~~P~i~~~l~~l~~~G~~~i~lvPl 64 (103)
T cd03413 32 NVFVGTVEGYPGLDDVLAKLKKAGIKKVTLMPL 64 (103)
T ss_pred cEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEeh
Confidence 456654448999999999999999999877665
No 40
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=33.00 E-value=2.7e+02 Score=28.87 Aligned_cols=79 Identities=18% Similarity=0.272 Sum_probs=57.1
Q ss_pred hcCCHHHHHHHHHHHHHhcccCchhHhhhHHHHHHHHHH---HHHHhhhccCCCCCCCCCCCCchhhHHHHHhhhChHHH
Q psy15564 888 ASLEPTVFLYILSSISEGLTALDTMVCTGCCATLDHIVT---YLFKQITNKGKKKSGRPGASPTGTDMFLQVLEVRPEIL 964 (1041)
Q Consensus 888 ~~L~~~~f~~ll~sl~~GL~s~d~~i~~~c~~~Ld~lat---~~~k~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~~~ll 964 (1041)
-.+++.....+.+.+. -...|+.|...|++.|++++. ..|..+.++-+ -+++..|++..+.-+
T Consensus 53 d~l~~~FI~Kia~~Vn--~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt------------~~~Li~hLq~~~~~i 118 (160)
T PF11841_consen 53 DTLSDSFIKKIASYVN--SSAMDASILQRSLAILESIVLNSPKLYQLVEQEVT------------LESLIRHLQVSNQEI 118 (160)
T ss_pred hhccHHHHHHHHHHHc--cccccchHHHHHHHHHHHHHhCCHHHHHHHhccCC------------HHHHHHHHHcCCHHH
Confidence 5677777777877777 444599999999999999984 44554444221 346888998887778
Q ss_pred HHHHHHHHHHHhhccC
Q psy15564 965 QQILSTVLNIIMFEDC 980 (1041)
Q Consensus 965 ~~~L~~l~n~ilfed~ 980 (1041)
+.=--.++|.++..--
T Consensus 119 q~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 119 QTNAIALINALFLKAD 134 (160)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 8777778888865543
No 41
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=30.01 E-value=3e+02 Score=26.22 Aligned_cols=62 Identities=6% Similarity=0.049 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhCCCCCCCceEEE--EeeecchhhhHHHHHHHHh-----hcccccCCCCCHHHHHHHHHHH
Q psy15564 257 KVFAERIQEELKQFPVEVQKDVIIL--FSAHSLPLRALVTLFARIT-----KLGWFDSEKDEFVFRNVIQDVS 322 (1041)
Q Consensus 257 pat~d~I~~~l~~~~~~g~~~v~lV--~SfHS~~~~tl~eL~~~it-----kl~~~~~ln~~~~Fi~~l~~l~ 322 (1041)
|...+.|.+..++ |.++++|+ |-|.|.|.+.+-+...+.. ++...+.++.++.+.+++.+-+
T Consensus 45 P~~~~~l~~l~~~----g~~~i~vvP~fL~~G~h~~~i~~~~~~~~~~~~~~i~~~~pLG~~~~l~~~l~~r~ 113 (117)
T cd03414 45 PSLPEALERLRAL----GARRVVVLPYLLFTGVLMDRIEEQVAELAAEPGIEFVLAPPLGPHPELAEALLERV 113 (117)
T ss_pred CCHHHHHHHHHHc----CCCEEEEEechhcCCchHHHHHHHHHHHHhCCCceEEECCCCCCCHHHHHHHHHHH
Confidence 4455555443222 33466776 5568988877655444432 4566788888998888877644
No 42
>KOG2171|consensus
Probab=26.51 E-value=1.2e+03 Score=31.25 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=48.2
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHhcCCHHHHHHHHHHHHHhcccCchhHhhhHHHHHHHHHHHHHHhhh
Q psy15564 866 PKLSQTYYVLLECLAQDHMSFLASLEPTVFLYILSSISEGLTALDTMVCTGCCATLDHIVTYLFKQIT 933 (1041)
Q Consensus 866 PKL~~~yf~lle~l~e~~~~~l~~L~~~~f~~ll~sl~~GL~s~d~~i~~~c~~~Ld~lat~~~k~~~ 933 (1041)
+|-.++-..-|..+.|-..+.+.. .+-.|+.-+..||++-++-|--.||.+|..+++-+-..++
T Consensus 362 w~~R~AaL~Als~i~EGc~~~m~~----~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iq 425 (1075)
T KOG2171|consen 362 WKERHAALLALSVIAEGCSDVMIG----NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQ 425 (1075)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHH----HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHH
Confidence 344455555567777776665543 4667889999999999999999999999999986665543
No 43
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=26.43 E-value=3.4e+02 Score=38.51 Aligned_cols=67 Identities=12% Similarity=0.154 Sum_probs=56.2
Q ss_pred chhhHHHHHHHHHHHHHhhHHHHhcCCHHHHHHHHHHHH-HhcccCchhHhhhHHHHHHHHHHHHHHh
Q psy15564 865 YPKLSQTYYVLLECLAQDHMSFLASLEPTVFLYILSSIS-EGLTALDTMVCTGCCATLDHIVTYLFKQ 931 (1041)
Q Consensus 865 yPKL~~~yf~lle~l~e~~~~~l~~L~~~~f~~ll~sl~-~GL~s~d~~i~~~c~~~Ld~lat~~~k~ 931 (1041)
.+.+.+.-|..++.++++|...+..++++.|..++.++. ++-+..|.+|+..+.+.+-.++.++.+.
T Consensus 1237 ~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~ 1304 (1780)
T PLN03076 1237 HKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEG 1304 (1780)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhc
Confidence 588889999999999999998888888999999999885 5666667888888888888887877543
No 44
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=26.10 E-value=6e+02 Score=28.39 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=41.3
Q ss_pred HHHHhhCCCchHHHHHHHHHHHHhhccccccccCCChhHHhHHHHHHHHHHHHhccccc
Q psy15564 740 AVERWYAEPEVTTPILKLFAELVQNRSQRLQFDVSSPNGILLFREASKIICSYGSRILS 798 (1041)
Q Consensus 740 ~i~~~~~~p~vv~~iLkf~~Elv~nr~~RL~f~~ssp~gilLFre~s~ii~~Y~~~il~ 798 (1041)
++-.|.+++.++..++|+++.++.--..=..-.+...++..-|-+..+.++.|...++.
T Consensus 49 iL~~~~~~~~l~~~~l~LLV~LT~P~~~~~~~~~~~~~~~~~~~~l~~~l~~yK~afl~ 107 (266)
T PF04821_consen 49 ILISYKDDDKLFLACLRLLVNLTWPIELLVESQPKDKNQRRNIPELLKYLQSYKEAFLD 107 (266)
T ss_pred HHHhccCchHHHHHHHHHHHHhCCCHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHcc
Confidence 34458889999999999999998521110111224677888888888888888765543
No 45
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=25.26 E-value=6.9e+02 Score=26.19 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHhhHHHHhcCCHHHHHHHHHHHHHhcccCchhHhhhHHHHHHHHHHHHHHh
Q psy15564 868 LSQTYYVLLECLAQDHMSFLASLEPTVFLYILSSISEGLTALDTMVCTGCCATLDHIVTYLFKQ 931 (1041)
Q Consensus 868 L~~~yf~lle~l~e~~~~~l~~L~~~~f~~ll~sl~~GL~s~d~~i~~~c~~~Ld~lat~~~k~ 931 (1041)
+.|+.|..+..+.+...+ +++ ...++..+..||.. +.+|-..|+..|..++...-..
T Consensus 43 lRK~ayE~lytlLd~~~~---~~~---~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~ 99 (169)
T PF08623_consen 43 LRKAAYECLYTLLDTCLS---RID---ISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEE 99 (169)
T ss_dssp HHHHHHHHHHHHHHSTCS---SS----HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHH
T ss_pred HHHHHHHHHHHHHHHHHH---hCC---HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHH
Confidence 566777777777664333 344 45558899999999 9999999999998888654443
No 46
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=20.07 E-value=1.3e+02 Score=21.81 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=24.7
Q ss_pred HHHHHHHhcccCchhHhhhHHHHHHHHHHH
Q psy15564 898 ILSSISEGLTALDTMVCTGCCATLDHIVTY 927 (1041)
Q Consensus 898 ll~sl~~GL~s~d~~i~~~c~~~Ld~lat~ 927 (1041)
|+..+..++++-+.+|-..++.+|..++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 456777889999999999999999999864
Done!