RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15564
(1041 letters)
>gnl|CDD|216106 pfam00762, Ferrochelatase, Ferrochelatase.
Length = 311
Score = 204 bits (521), Expect = 8e-59
Identities = 70/217 (32%), Positives = 109/217 (50%), Gaps = 23/217 (10%)
Query: 76 KTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPVQGKLGPYIARRRTPEVQKKYQEIG 135
KTA+L+LN+GGP + V +L ++DR +I+LP+Q L I R + + Y++IG
Sbjct: 1 KTAVLLLNLGGPESPEDVRPFLRNFLSDRRVIELPLQLWLAGIILPERPKKSAEAYRKIG 60
Query: 136 GGSPILKWTQLQGEKMANKLNSVCPEYGPHKHYVAFRYADPLTEETLDQIEKDGAERVVI 195
GGSP+ T+ Q E + +L K Y+A RY P E+ L++++
Sbjct: 61 GGSPLNVITRAQAEALQKRLGE---RGADVKVYLAMRYGPPSIEDALEELK--------- 108
Query: 196 FSQYPQDGAERVVIFSQYPQYSCATSGSSLNAIYTHLNKKGSPSNISWSLIDRWSTHPLL 255
DG +R+V+ YPQYS +T+GS L+ + L K +I R+ HP
Sbjct: 109 -----ADGVDRIVVLPLYPQYSASTTGSYLDELARAL--KKGRPAPEVRVIRRYYDHPGY 161
Query: 256 CKVFAERIQEELKQFPVEVQKDVIILFSAHSLPLRAL 292
+ A+ I+E L + +LFSAH LP R +
Sbjct: 162 IEALADSIREALAKLG----DPDRLLFSAHGLPERYI 194
>gnl|CDD|223353 COG0276, HemH, Protoheme ferro-lyase (ferrochelatase) [Coenzyme
metabolism].
Length = 320
Score = 192 bits (489), Expect = 2e-54
Identities = 72/221 (32%), Positives = 110/221 (49%), Gaps = 26/221 (11%)
Query: 73 TRPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPV--QGKLGPYIARRRTPEVQKK 130
KTA+L+LN+GGP + V YL ++DR +I+LP L I R +V K
Sbjct: 2 KMKKTAVLLLNLGGPETLEDVRPYLKNFLSDRRVIELPRPLWYPLAGIILPLRLKKVAKN 61
Query: 131 YQEIGGGSPILKWTQLQGEKMANKLNSVCPEYGPHKHYVAFRYADPLTEETLDQIEKDGA 190
Y+ IGG SP+ T+ Q + +L+ K Y+A RY P EE +++++KDG
Sbjct: 62 YESIGGKSPLNVITRAQAAALEERLD-----LPDFKVYLAMRYGPPFIEEAVEELKKDGV 116
Query: 191 ERVVIFSQYPQDGAERVVIFSQYPQYSCATSGSSLNAIYTHLNKKGSPSNISWSLIDRWS 250
ER+V+ YPQYS +T+GS ++ + L + S I +
Sbjct: 117 ERIVVL--------------PLYPQYSSSTTGSYVDELARALKELRGQ--PKISTIPDYY 160
Query: 251 THPLLCKVFAERIQEELKQFPVEVQKDVIILFSAHSLPLRA 291
PL + A+ I+E+L + P + D ++LFSAH LP R
Sbjct: 161 DEPLYIEALADSIREKLAKHPRD---DDVLLFSAHGLPKRY 198
>gnl|CDD|232827 TIGR00109, hemH, ferrochelatase. Human ferrochelatase, found at
the mitochondrial inner membrane inner surface, was
shown in an active recombinant form to be a homodimer.
This contrasts to an earlier finding by gel filtration
that overexpressed E. coli ferrochelatase runs as a
monomer [Biosynthesis of cofactors, prosthetic groups,
and carriers, Heme, porphyrin, and cobalamin].
Length = 322
Score = 179 bits (455), Expect = 7e-50
Identities = 74/220 (33%), Positives = 113/220 (51%), Gaps = 24/220 (10%)
Query: 74 RPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPV---QGKLGPYIARRRTPEVQKK 130
R KT +L++N+GGP ++V +L ++ D +I + + L I R+P++ K
Sbjct: 3 RKKTGVLLMNLGGPDKLEEVERFLKQLFADPRIIDISRAKWRKPLAKMILPLRSPKIAKN 62
Query: 131 YQEIGGGSPILKWTQLQGEKMANKLNSVCPEYGPHKHYVAFRYADPLTEETLDQIEKDGA 190
Y+ IGGGSP+L+ T+ Q A+ L P K Y+A RY +P TEE + ++ KDG
Sbjct: 63 YEAIGGGSPLLQITEQQ----AHALEKRLPNEIDFKVYIAMRYGEPFTEEAVKELLKDGV 118
Query: 191 ERVVIFSQYPQDGAERVVIFSQYPQYSCATSGSSLNAIYTHLNKKGSPSNISWSLIDRWS 250
ER V+ YP +S +T+GSS N + L K S + S+I+ W
Sbjct: 119 ERAVVL--------------PLYPHFSSSTTGSSFNELAEALKKLRS-LRPTISVIESWY 163
Query: 251 THPLLCKVFAERIQEELKQFPVEVQKDVIILFSAHSLPLR 290
+P K A+ I+E L FP + ++LFSAH LP
Sbjct: 164 DNPKYIKALADSIKETLASFP--EPDNAVLLFSAHGLPQS 201
>gnl|CDD|239504 cd03411, Ferrochelatase_N, Ferrochelatase, N-terminal domain:
Ferrochelatase (protoheme ferrolyase or HemH) is the
terminal enzyme of the heme biosynthetic pathway. It
catalyzes the insertion of ferrous iron into the
protoporphyrin IX ring yielding protoheme. This enzyme
is ubiquitous in nature and widely distributed in
bacteria and eukaryotes. Recently, some archaeal members
have been identified. The oligomeric state of these
enzymes varies depending on the presence of a
dimerization motif at the C-terminus.
Length = 159
Score = 173 bits (440), Expect = 7e-50
Identities = 58/178 (32%), Positives = 91/178 (51%), Gaps = 21/178 (11%)
Query: 77 TAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPV--QGKLGPYIARRRTPEVQKKYQEI 134
TA+L++N+GGP + V +L ++DR +I+LP + L I RR P+V K Y++I
Sbjct: 1 TAVLLVNLGGPESLEDVRPFLKNFLSDRRVIELPRPLRPILAGIILPRRPPKVAKNYKKI 60
Query: 135 GGGSPILKWTQLQGEKMANKLNSVCPEYGPHKHYVAFRYADPLTEETLDQIEKDGAERVV 194
GGGSP+ + T+ Q E + L+ K Y+A RY P EE L++++
Sbjct: 61 GGGSPLNEITRAQAEALEKALDE---RGIDVKVYLAMRYGPPSIEEALEELKA------- 110
Query: 195 IFSQYPQDGAERVVIFSQYPQYSCATSGSSLNAIYTHLNKKGSPSNISWSLIDRWSTH 252
DG +R+V+ YPQYS +T+GS L+ + L K +I + H
Sbjct: 111 -------DGVDRIVVLPLYPQYSASTTGSYLDEVERALKKL--RPAPELRVIRSFYDH 159
>gnl|CDD|234585 PRK00035, hemH, ferrochelatase; Reviewed.
Length = 333
Score = 166 bits (423), Expect = 2e-45
Identities = 73/221 (33%), Positives = 108/221 (48%), Gaps = 23/221 (10%)
Query: 75 PKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPV---QGKLGPYIARRRTPEVQKKY 131
PK A+L+LN+GGP + V +L ++DR +I LP Q L I R P+V K Y
Sbjct: 4 PKDAVLLLNLGGPETPEDVRPFLKNFLSDRRVIDLPRPLWQPLLAGIILPERLPKVAKHY 63
Query: 132 QEIGGGSPILKWTQLQGEKMANKLNSVCPEYGPHKHYVAFRYADPLTEETLDQIEKDGAE 191
IGGGSP+ T+ Q E + +L + P+ Y+ RY +P EE L+ ++
Sbjct: 64 ASIGGGSPLNVITRRQAEALQAELAARGPDL---PVYLGMRYWNPSIEEALEALK----- 115
Query: 192 RVVIFSQYPQDGAERVVIFSQYPQYSCATSGSSLNAIYTHLNKKGSPSNISWSLIDRWST 251
DG +R+V+ YPQYS +T+ S + L K I + I +
Sbjct: 116 ---------ADGVDRIVVLPLYPQYSYSTTASYFEDLARALAKLRLQPEIRF--IRSYYD 164
Query: 252 HPLLCKVFAERIQEELKQFPVEVQKDVIILFSAHSLPLRAL 292
HP + AE I+E L + + + D +LFSAH LP R +
Sbjct: 165 HPGYIEALAESIREALAKHGEDPEPDR-LLFSAHGLPQRYI 204
>gnl|CDD|178068 PLN02449, PLN02449, ferrochelatase.
Length = 485
Score = 145 bits (368), Expect = 7e-37
Identities = 86/294 (29%), Positives = 135/294 (45%), Gaps = 27/294 (9%)
Query: 1 SQAFRKPWSRLFSIQVCNSQASPSTGAKDSSKPKTAILMLNMGGPTHTDQVSEYLHRIMT 60
S SR S+ C S ++ + S +++ L L + S
Sbjct: 17 SPPRAGSSSRSLSLIQCVSSFRSASSSSSSLALRSSSLRLRANLAASSTSASAVDSPDDD 76
Query: 61 DRDMIQLPVQGITRPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLP-----VQGKL 115
+ V + K +L+LN+GGP D V +L+ + D D+I+LP +Q L
Sbjct: 77 EAVADHPKV---SEEKVGVLLLNLGGPETLDDVQPFLYNLFADPDIIRLPRLFRFLQKPL 133
Query: 116 GPYIARRRTPEVQKKYQEIGGGSPILKWTQLQGEKMANKLNSVCPEYGPHKHYVAFRYAD 175
+I+ R P+ ++ Y IGGGSP+ K T Q E +A L + + P K YV RY
Sbjct: 134 AQFISNLRAPKSKEGYASIGGGSPLRKITDEQAEALAKALEA---KNLPAKVYVGMRYWH 190
Query: 176 PLTEETLDQIEKDGAERVVIFSQYPQDGAERVVIFSQYPQYSCATSGSSLNAIYTHLNKK 235
P TEE +DQI+ DG ++V+ YPQ+S +TSGSSL + + +
Sbjct: 191 PFTEEAIDQIKA--------------DGITKLVVLPLYPQFSISTSGSSLRLLESIFRED 236
Query: 236 GSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPVEVQKDVIILFSAHSLPL 289
N+ ++I W K A+ I++EL +F ++V I FSAH +P+
Sbjct: 237 EYLVNMQHTVIPSWYQREGYVKAMADLIKKELAKFS--DPEEVHIFFSAHGVPV 288
>gnl|CDD|183526 PRK12435, PRK12435, ferrochelatase; Provisional.
Length = 311
Score = 70.4 bits (173), Expect = 7e-13
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 27/181 (14%)
Query: 117 PY---IARRRTPE------VQKKYQEIGGGSPILKWTQLQGEKMANKLNSVCPEYGPHKH 167
Y I R P ++ +Y+ IGG SP+ K T Q + + LN V E K
Sbjct: 23 RYYTHIRHGRKPSEEMLQDLKDRYEAIGGISPLAKITDEQAKALEKALNEVQDEV-EFKL 81
Query: 168 YVAFRYADPLTEETLDQIEKDGAERVVIFSQYPQDGAERVVIFSQYPQYSCATSGSSLNA 227
Y+ ++ +P E+ ++Q+ DG E + +V+ P YS + S
Sbjct: 82 YLGLKHIEPFIEDAVEQMHNDGIEEAI-----------SIVL---APHYSTFSVKSYNKR 127
Query: 228 IYTHLNKKGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPVEVQKDVIILFSAHSL 287
K G P+ S I+ W P + +A++I+E Q P E ++ +++ SAHSL
Sbjct: 128 AKEEAEKLGGPTITS---IESWYDEPKFIQYWADQIKETFAQIPEEEREKAVLIVSAHSL 184
Query: 288 P 288
P
Sbjct: 185 P 185
>gnl|CDD|239503 cd03409, Chelatase_Class_II, Class II Chelatase: a family of
ATP-independent monomeric or homodimeric enzymes that
catalyze the insertion of metal into protoporphyrin
rings. This family includes protoporphyrin IX
ferrochelatase (HemH), sirohydrochlorin ferrochelatase
(SirB) and the cobaltochelatases, CbiK and CbiX. HemH
and SirB are involved in heme and siroheme biosynthesis,
respectively, while the cobaltochelatases are associated
with cobalamin biosynthesis. Excluded from this family
are the ATP-dependent heterotrimeric chelatases (class
I) and the multifunctional homodimeric enzymes with
dehydrogenase and chelatase activities (class III).
Length = 101
Score = 49.7 bits (119), Expect = 2e-07
Identities = 23/110 (20%), Positives = 36/110 (32%), Gaps = 22/110 (20%)
Query: 138 SPILKWTQLQGEKMANKLNSVCPEYGPHKHYVAFRYAD-PLTEETLDQIEKDGAERVVIF 196
P K + Q +A L +YV F+ P TEE + ++ ++G +RVVI
Sbjct: 13 DPYKKDIEAQAHNLAESLP-------DFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIV 65
Query: 197 SQYPQDGAERVVIFSQYPQYSCATSGSSLNAIYTHLNKKGSPSNISWSLI 246
P G E + I + G P +
Sbjct: 66 PLAPVSGDE--------------VFYDIDSEIGLVRKQVGEPLGEKLTRG 101
>gnl|CDD|238240 cd00419, Ferrochelatase_C, Ferrochelatase, C-terminal domain:
Ferrochelatase (protoheme ferrolyase or HemH) is the
terminal enzyme of the heme biosynthetic pathway. It
catalyzes the insertion of ferrous iron into the
protoporphyrin IX ring yielding protoheme. This enzyme
is ubiquitous in nature and widely distributed in
bacteria and eukaryotes. Recently, some archaeal members
have been identified. The oligomeric state of these
enzymes varies depending on the presence of a
dimerization motif at the C-terminus.
Length = 135
Score = 41.4 bits (98), Expect = 3e-04
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 257 KVFAERIQEELKQFPVEVQKDVIILFSAHSLPLRA 291
+ A+ I+E L + P ++ +LFSAH LP+R
Sbjct: 1 EALADHIREALAELP---REKDRLLFSAHGLPVRD 32
>gnl|CDD|239507 cd03414, CbiX_SirB_C, Sirohydrochlorin cobalt chelatase (CbiX) and
sirohydrochlorin iron chelatase (SirB), C-terminal
domain. SirB catalyzes the ferro-chelation of
sirohydrochlorin to siroheme, the prosthetic group of
sulfite and nitrite reductases. CbiX is a
cobaltochelatase, responsible for the chelation of Co2+
into sirohydrochlorin, an important step in the vitamin
B12 biosynthetic pathway. CbiX often contains a
C-terminal histidine-rich region that may be important
for metal delivery and/or storage, and may also contain
an iron-sulfur center. Both CbiX and SirB are found in a
wide range of bacteria.
Length = 117
Score = 32.6 bits (75), Expect = 0.31
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 19/90 (21%)
Query: 176 PLTEETLDQIEKDGAERVVIFSQYPQDGAERVVIFSQYPQYSCATSGSSLNAIYTHLNKK 235
P E L+++ GA RVV+ Y T G ++ I + +
Sbjct: 45 PSLPEALERLRALGARRVVVLP------------------YLLFT-GVLMDRIEEQVAEL 85
Query: 236 GSPSNISWSLIDRWSTHPLLCKVFAERIQE 265
+ I + L HP L + ER++E
Sbjct: 86 AAEPGIEFVLAPPLGPHPELAEALLERVRE 115
>gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional.
Length = 387
Score = 31.9 bits (73), Expect = 1.8
Identities = 24/65 (36%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Query: 567 TSWR------PAFLDPNTLKLFFNLYHSLPSTLSHLALACL----VQIASVRRSLFSNAE 616
T WR P P KL NLY S + H ALAC + I RR+ F A
Sbjct: 239 TGWRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFEPETLAILEARRAEF--AR 296
Query: 617 RARFL 621
R FL
Sbjct: 297 RRDFL 301
>gnl|CDD|220728 pfam10390, ELL, RNA polymerase II elongation factor ELL. ELL is a
family of RNA polymerase II elongation factors. It is
bound stably to elongation-associated factors 1 and 2,
EAFs, and together these act as a strong regulator of
transcription activity. by direct interaction with Pol
II. ELL binds to pol II on its own but the affinity is
greatly increased by the cooperation of EAF. Some
members carry an Occludin domain pfam07303 just
downstream. There is no S. cerevisiae member.
Length = 285
Score = 30.5 bits (69), Expect = 3.9
Identities = 33/169 (19%), Positives = 57/169 (33%), Gaps = 33/169 (19%)
Query: 176 PLTEETLDQIEKDGAERVVIFSQYPQDGAERVVIFSQYPQYSCATSGSSLNAIYTHLNKK 235
T E + Q E++ R + + V Q S S+++ K+
Sbjct: 122 QATRERMAQAEEEERSRGTKQIKPGGPEGGKKV------QIKKPLSEISVSSPLASNRKQ 175
Query: 236 GSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPVEVQKDVIILFSAHSLPLRA--LV 293
P N S S + ++ + ER+ H L L+
Sbjct: 176 SLPGNGSSSSRKANGSSAVMKRPLRERV--------------------IHLLALKPYKKP 215
Query: 294 TLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQVQKNSKVYRR--LNEV 340
L R+ K G D +K+ +++Q V+N L + NS + EV
Sbjct: 216 ELLLRLQKDGLADKDKNS--LDSLLQQVAN-LNPKDNSYTLKDCVYKEV 261
>gnl|CDD|185657 PTZ00479, PTZ00479, RAP Superfamily; Provisional.
Length = 435
Score = 30.5 bits (69), Expect = 4.7
Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 18/106 (16%)
Query: 245 LIDRWSTHPLLCKVFA-ERIQEELKQFPVEVQKDVIILFSAHSLPLRALVTLFARITKLG 303
L+ + +H L+C +A R+Q + F K+V F + L+ + + KLG
Sbjct: 128 LLPNFYSHSLMCIAWALNRVQIRDEAFLSRFAKEVGEKFD--DIRTTDLIKICNSLAKLG 185
Query: 304 WFDSEKDEFV---------------FRNVIQDVSNFLQVQKNSKVY 334
+ + +F+ FRNV+ DV+ N+++Y
Sbjct: 186 GYTNNLKKFLSEKMVEKLESLFAQDFRNVVNDVTLIHLYDDNTQIY 231
>gnl|CDD|132928 cd07017, S14_ClpP_2, Caseinolytic protease (ClpP) is an
ATP-dependent, highly conserved serine protease. Clp
protease (caseinolytic protease; ClpP; Peptidase S14) is
a highly conserved serine protease present throughout in
bacteria and eukaryota, but seems to be absent in
archaea, mollicutes and some fungi. Clp proteases are
involved in a number of cellular processes such as
degradation of misfolded proteins, regulation of
short-lived proteins and housekeeping removal of
dysfunctional proteins. They are also implicated in the
control of cell growth, targeting DNA-binding protein
from starved cells. ClpP has also been linked to the
tight regulation of virulence genes in the pathogens
Listeria monocytogenes and Salmonella typhimurium. This
enzyme belong to the family of ATP-dependent proteases;
the functional Clp protease is comprised of two
components: a proteolytic component and one of several
regulatory ATPase components, both of which are required
for effective levels of protease activity in the
presence of ATP, although the proteolytic subunit alone
does possess some catalytic activity. Active site
consists of the triad Ser, His and Asp; some members
have lost all of these active site residues and are
therefore inactive, while others may have one or two
large insertions. ClpP seems to prefer hydrophobic or
non-polar residues at P1 or P1' positions in its
substrate. The protease exists as a tetradecamer made up
of two heptameric rings stacked back-to-back such that
the catalytic triad of each subunit is located at the
interface between three monomers, thus making
oligomerization essential for function.
Length = 171
Score = 29.3 bits (67), Expect = 6.0
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 14/48 (29%)
Query: 886 FLASLEPT--VFLYILS---SISEGLTALDTM---------VCTGCCA 919
+L S +P ++LYI S S++ GL DTM +C G A
Sbjct: 32 YLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPPVSTICLGLAA 79
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation
factor RRN3. This family consists of several eukaryotic
proteins which are homologous to the yeast RRN3 protein.
RRN3 is one of the RRN genes specifically required for
the transcription of rDNA by RNA polymerase I (Pol I) in
Saccharomyces cerevisiae.
Length = 554
Score = 30.3 bits (69), Expect = 6.0
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 5/87 (5%)
Query: 356 KIITNLKYWGRSEQIITKTLQLLNDLSVGYSCVRKLVKLDEVQFMLNNHTIPTSWRPAFL 415
+ I +L + GR E + +Q L +L + L EV ML +H +P +
Sbjct: 77 EAILSLNWLGRDESFVEAYIQFLGNL-----VSAQGKYLGEVLSMLVSHFVPPPSSTSES 131
Query: 416 DPNTLKLFFNLYHSLPSTLSHLSEHFP 442
+ + + L ++ P
Sbjct: 132 PGDPPVEQREVLSRVHDALRYILRLVP 158
>gnl|CDD|180755 PRK06926, PRK06926, flagellar motor protein MotP; Reviewed.
Length = 271
Score = 29.7 bits (67), Expect = 6.9
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 516 MDGELVCRVLQLMNLTDPRLLGP 538
M G LV VL L NL DP LGP
Sbjct: 163 MIGTLVGLVLMLKNLNDPSTLGP 185
>gnl|CDD|226207 COG3682, COG3682, Predicted transcriptional regulator
[Transcription].
Length = 123
Score = 28.8 bits (65), Expect = 6.9
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 127 VQKKYQEIGGGSPILKWTQLQGEKMANKLNSVCPEYGPHKHYVA-FRYADPLTEETLDQI 185
+KK SP+L Q + + L+ +C G VA F + LT + ++ +
Sbjct: 55 TRKKDGRAFRYSPLLTRDQYVAGESQDLLDKICD--GGLASLVAHFAEKEKLTADEIEAL 112
Query: 186 EK 187
+
Sbjct: 113 KA 114
>gnl|CDD|118874 pfam10353, DUF2430, Protein of unknown function (DUF2430). This is
a family of short, 111 residue, proteins found in S.
pombe. The function is not known.
Length = 107
Score = 28.4 bits (63), Expect = 7.3
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 850 FVKLLLSINQSDLLDYPKLSQTYYVLLECLAQDHMSFL---ASLEPTVFLYILSSISEGL 906
F+K +L+ +DY KL Y LL H L A + + Y+L++I+E
Sbjct: 11 FIKFILAEVDLTFVDYAKLPPKYAELLANAIDQHGLMLFDTADIRIEAYNYLLNNITEIN 70
Query: 907 TALDTMVC 914
D +C
Sbjct: 71 NDTDAYLC 78
>gnl|CDD|173945 cd08186, Fe-ADH8, Iron-containing alcohol dehydrogenase. Type III
Iron-containing alcohol dehydrogenases (ADH). Alcohol
dehydrogenase catalyzes the reduction of acetaldehyde to
alcohol with NADP as cofactor. The ADH of
hyperthermophilic archaeon Thermococcus hydrothermalis
oxidizes a series of primary aliphatic and aromatic
alcohols preferentially from C2 to C8 but is also active
towards methanol and glycerol and stereospecific for
monoterpenes. It was suggested that the type III ADHs in
microorganisms are involved in acetaldehyde detoxication
rather than in alcohol turnover.
Length = 383
Score = 29.6 bits (67), Expect = 8.6
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 773 VSSPNGILLFREASKIICSYGSRILSVEVPDD------KLYSHKLKGISICFSML 821
++P ILL +EA ++I Y + L E PD+ LY+ + GI+I +L
Sbjct: 204 TANPYSILLAKEAVRLIAEYLPKAL--EEPDNLQARYWLLYASAIAGIAIDNGLL 256
>gnl|CDD|216500 pfam01432, Peptidase_M3, Peptidase family M3. This is the Thimet
oligopeptidase family, large family of mammalian and
bacterial oligopeptidases that cleave medium sized
peptides. The group also contains mitochondrial
intermediate peptidase which is encoded by nuclear DNA
but functions within the mitochondria to remove the
leader sequence.
Length = 450
Score = 29.7 bits (67), Expect = 8.7
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 394 LDEVQFMLNNHTIPTSWRPAFLDPNTLK-LFFNLYHSLPSTLSHLSEHFPFLGNNVA-DV 451
D V ++L N T P+S +P+ L + ++ LF HS+ S LS +E+ G NV D
Sbjct: 210 KDPVPYLLCNFTKPSSGKPSLLTHDDVETLFHEFGHSMHSLLSR-TEYSYVSGTNVPIDF 268
Query: 452 SEM 454
+E+
Sbjct: 269 AEI 271
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated.
Length = 545
Score = 29.9 bits (68), Expect = 9.3
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 773 VSSPNGILLFREASK-IICSYGSRILSVEVPDDKLYSH 809
V P+G + ++ SK II S G I S+EV +D LY H
Sbjct: 425 VLHPDGYIKIKDRSKDIIISGGENISSIEV-EDVLYRH 461
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.410
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 53,430,459
Number of extensions: 5345152
Number of successful extensions: 4383
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4346
Number of HSP's successfully gapped: 35
Length of query: 1041
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 934
Effective length of database: 6,191,724
Effective search space: 5783070216
Effective search space used: 5783070216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (28.4 bits)