RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15564
(1041 letters)
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation,
heme biosynthesis, iron, iron-sulfur, lyase, membrane,
metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo
sapiens} PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A*
2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 3aqi_A*
2pnj_A* 2po5_A* 2po7_A*
Length = 359
Score = 269 bits (691), Expect = 5e-82
Identities = 111/217 (51%), Positives = 149/217 (68%), Gaps = 14/217 (6%)
Query: 74 RPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPVQGKLGPYIARRRTPEVQKKYQE 133
+PKT ILMLNMGGP V ++L R+ DRD++ LP+Q KL P+IA+RRTP++Q++Y+
Sbjct: 2 KPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRRTPKIQEQYRR 61
Query: 134 IGGGSPILKWTQLQGEKMANKLNSVCPEYGPHKHYVAFRYADPLTEETLDQIEKDGAERV 193
IGGGSPI WT QGE M L+ + P PHK+Y+ FRY PLTEE ++++E+
Sbjct: 62 IGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMER------ 115
Query: 194 VIFSQYPQDGAERVVIFSQYPQYSCATSGSSLNAIYTHLNKKGSPSNISWSLIDRWSTHP 253
DG ER + F+QYPQYSC+T+GSSLNAIY + N+ G + WS IDRW TH
Sbjct: 116 --------DGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHH 167
Query: 254 LLCKVFAERIQEELKQFPVEVQKDVIILFSAHSLPLR 290
LL + FA+ I +EL FP+E + +V+ILFSAHSLP+
Sbjct: 168 LLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMS 204
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A
{Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Length = 362
Score = 259 bits (664), Expect = 3e-78
Identities = 95/219 (43%), Positives = 142/219 (64%), Gaps = 16/219 (7%)
Query: 74 RPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLP--VQGKLGPYIARRRTPEVQKKY 131
R T I+++NMGGP+ ++ ++L+++ D D+I + Q + YIA+ RTP+++K+Y
Sbjct: 5 RSPTGIVLMNMGGPSKVEETYDFLYQLFADNDLIPISAKYQKTIAKYIAKFRTPKIEKQY 64
Query: 132 QEIGGGSPILKWTQLQGEKMANKLNSVCPEYGPHKHYVAFRYADPLTEETLDQIEKDGAE 191
+EIGGGSPI KW++ Q ++ L+ CPE PHK YVAFRYA PLT ET Q+ K
Sbjct: 65 REIGGGSPIRKWSEYQATEVCKILDKTCPETAPHKPYVAFRYAKPLTAETYKQMLK---- 120
Query: 192 RVVIFSQYPQDGAERVVIFSQYPQYSCATSGSSLNAIYTHLNKKGSPSNISWSLIDRWST 251
DG ++ V FSQYP +S +T+GSS+N ++ + S +ISWS+IDRW T
Sbjct: 121 ----------DGVKKAVAFSQYPHFSYSTTGSSINELWRQIKALDSERSISWSVIDRWPT 170
Query: 252 HPLLCKVFAERIQEELKQFPVEVQKDVIILFSAHSLPLR 290
+ L K F+E I ++L++FP V+ V++LFSAHSLP+
Sbjct: 171 NEGLIKAFSENITKKLQEFPQPVRDKVVLLFSAHSLPMD 209
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus
subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A
3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A*
2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Length = 310
Score = 227 bits (582), Expect = 2e-67
Identities = 42/221 (19%), Positives = 85/221 (38%), Gaps = 31/221 (14%)
Query: 72 ITRPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPVQGKLGPYIARRRTPEVQKKY 131
++R K +L++ G P + + Y I R +++ +Y
Sbjct: 1 MSRKKMGLLVMAYGTPYKEEDIERYYTHIRRGRK-------------PEPEMLQDLKDRY 47
Query: 132 QEIGGGSPILKWTQLQGEKMANKLNSVCPEYGPHKHYVAFRYADPLTEETLDQIEKDGAE 191
+ IGG SP+ + T+ Q + LN + E K Y+ + +P E+ + ++
Sbjct: 48 EAIGGISPLAQITEQQAHNLEQHLNEIQDEI-TFKAYIGLAHIEPFIEDAVAEMH----- 101
Query: 192 RVVIFSQYPQDGAERVVIFSQYPQYSCATSGSSLNAIYTHLNKKGSPSNISWSLIDRWST 251
+DG V P +S + S K G + + ++ W
Sbjct: 102 ---------KDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKLGGLT---ITSVESWYD 149
Query: 252 HPLLCKVFAERIQEELKQFPVEVQKDVIILFSAHSLPLRAL 292
P + +R++E P + +++ +++ SAHSLP +
Sbjct: 150 EPKFVTYWVDRVKETYASMPEDERENAMLIVSAHSLPEKIK 190
Score = 49.1 bits (118), Expect = 4e-06
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 31 SKPKTAILMLNMGGPTHTDQVSEYLHRIMTDRD 63
S+ K +L++ G P + + Y I R
Sbjct: 2 SRKKMGLLVMAYGTPYKEEDIERYYTHIRRGRK 34
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
PDB: 2l1l_B
Length = 1049
Score = 74.2 bits (181), Expect = 2e-13
Identities = 93/780 (11%), Positives = 231/780 (29%), Gaps = 70/780 (8%)
Query: 279 IILFSAHSLPLRALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQVQKNSKVYRRLN 338
++ + P +TL + ++ + R + N LQ S + +
Sbjct: 239 LLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTAD 298
Query: 339 EVLGLCDEATVLSVFVRKIITNLKYWGRSEQIITKTLQLLNDLSVGYSCVRKLVKLDEVQ 398
+ F++ + L + + + ++ + L +L + + + L++L +++
Sbjct: 299 LKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLSKIE 356
Query: 399 FMLNNHTIPTSWRPAFLDPNTLKLFFNLYHS-LPSTLSHLSEHFPF----------LGNN 447
T W D L ++Y + E+ G
Sbjct: 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEI 416
Query: 448 VADVSEMRCRSMFYTSLGRLLM----VDLGEDEDRFEAFMLPLTSRLTWLVYIIGAAVGG 503
V + + Y S +L+ +++ + E+ + + W + I
Sbjct: 417 VREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWA 476
Query: 504 RVSFNSNEDHDAMDGELVCRVLQLMNLTDPRLLGPGPGCEKLELAMLSFFEQFRKIYVGD 563
S + D +V + L++LT + + ++ Q+ +
Sbjct: 477 IGSISGTMSEDTEKRFVVTVIKDLLDLTVKKR--GKDNKAVVASDIMYVVGQYPRF---- 530
Query: 564 QIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSH--LALACLVQIASVRRSLFSNAERARFL 621
FL LKLF ++ + +VQ + E F+
Sbjct: 531 ---LKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI 587
Query: 622 TQLVNGVKQILQNPQGLSDANNYHEFCRLLARLKSNYQLVKPGCRRLSALQYLEFPSEHF 681
++ +++ + H F + + S + V R LS L ++ P+ +
Sbjct: 588 QTIIRDIQKTTAD----LQPQQVHTFYKACGIIISEERSVAERNRLLSDL--MQLPNMAW 641
Query: 682 PFLGNNVADVSEMRCRSMFYTSLGRLLMVDLGEDEDRFEAFMLPLTSNYPVYTPIFLAAV 741
+ + S + ++ ++ F L Y ++ A
Sbjct: 642 DTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVS 701
Query: 742 ERWYAEPEVTTPILKLFAELVQNRSQRLQFDVSSPNGILLFREASKIICSYGSRILSVEV 801
A+ I ++ R+ + +E K++ +Y S+ +++
Sbjct: 702 SMISAQVAAEGLIATKTPKVRGLRT--------------IKKEILKLVETYISKARNLDD 747
Query: 802 PDDKLYSHKLKGISICFSMLKAALCGGYV------NFGVFRLYGDEALDNALKTFVKLLL 855
L L + + V + + L++ + L
Sbjct: 748 VVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTL 807
Query: 856 SINQSDLLDYPKLSQTYYVLLECLAQDHMSFLASLEPTVFLYILSSISEGLTALDTMVCT 915
+ D +YP+ +Y LL+ + + + L P F + +I + V
Sbjct: 808 DMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEV 867
Query: 916 GCCATLDHIVTYLFKQITNKGKKKSGRPGASPTGTDMFLQVLEVRPEILQQILSTVLNII 975
+V + + + F + + + + +
Sbjct: 868 NGLQIALDLVKNIERMGNVPFANE-------------FHKNYFF--IFVSETFFVLTDSD 912
Query: 976 MFEDCRNQWSMSRPLLGLILLNEEYFNQLRENIVRGQPPDKQASMVQWFENLMNSIERNL 1035
Q + L+ L+ + + L + Q Q + Q+ N++++ +L
Sbjct: 913 HKSGFSKQALLLMKLISLV-YDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHL 971
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.7 bits (172), Expect = 2e-12
Identities = 68/388 (17%), Positives = 129/388 (33%), Gaps = 83/388 (21%)
Query: 706 RLLMVDLGEDEDRFEAFM-LPLTSNYPVYTPIFLAAVERWYAEPEVTTPILKLFAELV-- 762
RL L + E+ + F+ L NY FL E + + +++ E
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYK-----FLM--SPIKTEQRQPSMMTRMYIEQRDR 118
Query: 763 -QNRSQRL-QFDVSSPNGILLFREASKIICSYGSRILSVEVPDDKLYSHKLKGISICF-- 818
N +Q +++VS L R+A +L + P + + G
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQA----------LLELR-PAKNVLIDGVLG----SGK 163
Query: 819 SMLKAALCGGYV-----NFGVFRL-YGDEALDNALKTFVKLLLSINQSDLLDYPKLSQTY 872
+ + +C Y +F +F L + + ++ LL + S
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 873 YVLLECLAQDHMSFLASLEPTVF-LYILSSI--SEGLTALDTMVCTGCCATLDHIVTYLF 929
+ + Q + L +P L +L ++ ++ A + C L +T F
Sbjct: 224 KLRIH-SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-----LSCKIL---LTTRF 274
Query: 930 KQITN--KGKKKS------GRPGASPTGT-DMFLQVLEVRPEIL-QQILST---VLNII- 975
KQ+T+ + +P + L+ L+ RP+ L +++L+T L+II
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 976 -MFEDCRNQWSMSRPLLG--LILLNEEYFNQLRENIVRGQ-------PPD----KQASMV 1021
D W + + L + E N L R PP +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 1022 QWF-------ENLMNSIE-RNLLTKNRD 1041
WF ++N + +L+ K
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Score = 68.0 bits (165), Expect = 1e-11
Identities = 103/691 (14%), Positives = 200/691 (28%), Gaps = 227/691 (32%)
Query: 177 LTEETLDQI--EKDGAERVV----IFSQYPQDGAERVVIFSQYPQYSCATSGSSLNAIYT 230
L++E +D I KD + ++ ++ V L Y
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV-------------EEVLRINY- 91
Query: 231 HLNKKGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPVEVQKDVII----LFSAHS 286
+ L+ T E+ Q + Q+D + +F+ ++
Sbjct: 92 -----------KF-LMSPIKT---------EQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 287 LPLRALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQVQKNSKVY-------RRLNE 339
+ R KL R + + L+ KN + +
Sbjct: 131 VS-RL-----QPYLKL------------RQALLE----LRPAKNVLIDGVLGSGKTWV-- 166
Query: 340 VLGLCDEATVLSVFVRKIITNLKYWGRSEQIITKTLQLLNDLSVGYSCVRKLVKLDEVQF 399
L +C V KI +W L++ + V
Sbjct: 167 ALDVCLSYKVQCKMDFKI-----FW----------------LNLKNCN-----SPETVLE 200
Query: 400 MLNNHTIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLSEHFPFLGNNVADVSEMRCRSM 459
ML L + + + S+H + + + R +
Sbjct: 201 MLQK----------------------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 460 FYTSLGR-LLMVDLGEDEDRFEAF-----MLPLTSRLTWLVYIIGAAVGGRVSFNSNED- 512
LL++ ++ + AF +L LT+R + + AA +S + +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKIL-LTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 513 --HDAMDGELV----CRVLQL---MNLTDPRLLG-------PGP---------GCEKLEL 547
D + L+ CR L + T+PR L G C+KL
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 548 AMLSFFEQ-----FRKIYV-------GDQIPTS-----WRPAFLDPNTLKLFFNLYH--S 588
+ S +RK++ IPT W + + + + N H S
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW--FDVIKSDVMVVVNKLHKYS 415
Query: 589 L------PSTLS--HLALACLVQIASVRRSLFSNAERARFLTQLVNGVKQILQNPQGLSD 640
L ST+S + L V++ + +L + N K +
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLEN-EYAL-----HRSIVDH-YNIPKTFDSDDLIPPY 468
Query: 641 ANNYHEFCRLLARLKSNYQLVKPGCRRLSALQYLEFPSEH--FPFLGNNVADVSEMRCRS 698
+ Y F + + L + F F FL + R S
Sbjct: 469 LDQY--FYSHIG-----HHLKNIE----HPERMTLFRMVFLDFRFLEQKI------RHDS 511
Query: 699 MFYTSLGRLLMVDLGEDEDRFEAFMLPLTSNYPVYTPIFLAAVERWYAEPEVTTPILKLF 758
+ + G +L + + ++ ++ N P Y + + A+ + + E I +
Sbjct: 512 TAWNASGSIL--NTLQQLKFYKPYI---CDNDPKYERL-VNAILDFLPKIE-ENLICSKY 564
Query: 759 AELVQNRSQRLQFDVSSPNGILLFREASKII 789
+L++ L + + +F EA K +
Sbjct: 565 TDLLR---IALMAEDEA-----IFEEAHKQV 587
Score = 53.3 bits (127), Expect = 5e-07
Identities = 98/681 (14%), Positives = 177/681 (25%), Gaps = 245/681 (35%)
Query: 51 VSEYLHRIMTDR---DMIQLP--VQGITR--------PKTAI-------LMLNMG----- 85
V + I++ +I V G R + + L +N
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 86 ------GPT-HTDQVSEYLHRIMTDRDMIQLPVQGKLGPYIARRRTP--EVQKKYQEIGG 136
P+ T E R+ D Y R P ++++ E+
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQ--------VFAKYNVSRLQPYLKLRQALLEL-- 147
Query: 137 GSPILKWTQLQGEKMANK--L-NSVCPEYGPHK------HYVAFRYADPLTEETLD---- 183
P K + G + K + VC Y ++ + + E L+
Sbjct: 148 -RPA-KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS-PETVLEMLQK 204
Query: 184 ---QIEKDGAERVVIFSQYPQ---DGAERVVIFSQYPQY--------------------- 216
QI+ + R S + + Y
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 217 SC----ATSGSSL-----NAIYTHL----NKKGSPSNISWSLIDRW-------------S 250
SC T + A TH+ + + SL+ ++ +
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 251 THPLLCKVFAERIQEELKQFPVEVQKDVIILFSAHSLPLRALVTLFARITKLGWFDSEKD 310
T+P + AE I++ L A W D
Sbjct: 325 TNPRRLSIIAESIRDGL-----------------------------ATWD--NWKHVNCD 353
Query: 311 EFVFRNVIQDVSNFLQVQKNSKVYRRLNEVLGLCDEATVLSVFVR--KIITNL--KYWGR 366
+ +I+ N L+ + K++ R LSVF I T L W
Sbjct: 354 K--LTTIIESSLNVLEPAEYRKMFDR-------------LSVFPPSAHIPTILLSLIWFD 398
Query: 367 SEQIITKTLQLLNDLSVGYSCVRKLVKLDEVQFMLNNHTIPTSWRPAFLDPNTL-KLFFN 425
+ ++N L LV+ + ++ +I + + L + +
Sbjct: 399 VIKSDVM--VVVNKL-----HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 426 LYHSLPSTLSHLSEHFPFLGNNVADVSEMRCRSMFYTSLGR-LLMVDLGEDEDRFEAFML 484
Y ++P T P+L FY+ +G L ++ E F L
Sbjct: 452 HY-NIPKTFDSDDLIPPYLDQ------------YFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 485 PLTSRLTWLVYIIGAAVGGRVSFNSNEDHDAMDGELVCRVLQLMNLTDPRLLGPGPGCEK 544
D ++ ++ R
Sbjct: 499 ---------------------------DFRFLEQKI-------------RHDSTAWNASG 518
Query: 545 LELAMLSFFEQFRKIYVGDQIPTSWRPAFLDPNTLKLFF-----NLYHSLPSTLSHLALA 599
L L + ++ Y+ D P R N + F NL S T
Sbjct: 519 SILNTLQQLKFYKP-YICDNDPKYERLV----NAILDFLPKIEENLICS-KYT------- 565
Query: 600 CLVQIA--SVRRSLFSNAERA 618
L++IA + ++F A +
Sbjct: 566 DLLRIALMAEDEAIFEEAHKQ 586
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.5 bits (167), Expect = 9e-12
Identities = 93/564 (16%), Positives = 167/564 (29%), Gaps = 179/564 (31%)
Query: 428 HSL-PSTLSHLSEHFPFLGNNVADVSEMRCRSMFYTSLGRLLMVDLGEDEDRFEAFMLPL 486
+S P TLSH S L V + F+ + +L +++F +LP
Sbjct: 4 YSTRPLTLSHGSLEHVLL------VPT----ASFFIAS-QL--------QEQFNK-ILPE 43
Query: 487 TSRLTWLVYIIGAAVGGRVSFNSNEDHDAMDGELVCRVLQ-LMNLTDPRLLGPGPGCEKL 545
+ +D ELV + L + +L +P G + L
Sbjct: 44 PTEGFAA-----------------DDEPTTPAELVGKFLGYVSSLVEP--SKVGQFDQVL 84
Query: 546 ELAMLSFFEQFRKIYVGDQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIA 605
L L+ FE +L+ N + H+L + L LV+
Sbjct: 85 NLC-LTEFEN----------------CYLEGNDI-------HALAAKLLQENDTTLVKTK 120
Query: 606 SVRRSLFSNAERARFLTQLVNGVKQILQNPQGLSDANNYHEFCRLLARLKSNYQLVKPGC 665
+ ++ AR + + + + S L + V G
Sbjct: 121 ELIKNYI----TARIMAK-----RPFDKKSN--S---------ALF-------RAVGEGN 153
Query: 666 RRLSAL---QYLEFPSEHFPFLGNNVADVSEMRCRSMF--YTSLGRLLMVDLGEDEDRFE 720
+L A+ Q GN E+R ++ Y L L+
Sbjct: 154 AQLVAIFGGQ------------GNTDDYFEELR--DLYQTYHVLVGDLI-------KFSA 192
Query: 721 AFMLPLTSNYPVYTPIFLAA--VERWYAEPEVTTPILKLFAELVQNRSQRLQFDVSSPNG 778
+ L +F + W P TP + +S P
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPS-NTPDKDYLLSI----------PISCP-L 240
Query: 779 ILLFREAS-KIICSYGSRILSVEVPDDKLYSHKLKGISICFSMLKAALCGGYVNFGVFRL 837
I + + A + ++L P + L S+ LKG + L A+
Sbjct: 241 IGVIQLAHYVVTA----KLLGFT-PGE-LRSY-LKGATGHSQGLVTAV--------AIAE 285
Query: 838 YGD-EALDNALKTFVKLLLSI----NQSDLLDYPKLSQTYYVLLECLAQD-----HMSFL 887
E+ +++ + +L I ++ YP S +L + L + M L
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEA----YPNTSLPPSILEDSLENNEGVPSPM--L 339
Query: 888 A-------SLEPTV-----FLYILSSISEGLT-ALDTMVCTGCCATLDHIVTYLFKQITN 934
+ ++ V L + L +V +G +L + L K
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 935 KGKKKSGRPGAS--PTGTDMFLQV 956
G +S P + ++ FL V
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPV 423
Score = 51.2 bits (122), Expect = 2e-06
Identities = 118/633 (18%), Positives = 194/633 (30%), Gaps = 196/633 (30%)
Query: 399 FMLNNHTIPTSWR-PA--FLDPNTLKLFFNLYHSL------------PSTLSHLSEHFPF 443
L++ ++ P F + L+ FN L P+T + L F
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFN--KILPEPTEGFAADDEPTTPAELVGKF-- 64
Query: 444 LGNNVADVSEMRCRSMFYTSLGRLLMVDLGEDEDRF--------EAFMLP------LTSR 489
LG V+ + E F ++L + L E E+ + A L L
Sbjct: 65 LGY-VSSLVEPSKVGQF----DQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 490 LTWL-VYIIGAAVGGRVSFNSNED---HDAMDGELVCRVLQLMNLTDPRLLGPGPGCEKL 545
+ YI + R + +G QL+ + G G G
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA-----QLVAI-----FG-GQG---- 164
Query: 546 ELAMLSFFEQFRKIY------VGDQIPTS----WRPAFLDPNTLKLF---FNLYH----- 587
+FE+ R +Y VGD I S + K+F N+
Sbjct: 165 --NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 588 -SLPST--LSHLALAC----LVQIAS---VRRSLFSNAERARFLTQLVNGVKQILQNPQG 637
+ P L + ++C ++Q+A + L R + G Q L
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 638 LSDANNYHEFCRLLARLKSNYQLVKPGCRRLSALQYLEFPSEHFPFLGNNVADVSEMRCR 697
+++ +++ F + V+ A+ L F F+G +RC
Sbjct: 283 IAETDSWESF----------FVSVR------KAITVL------F-FIG--------VRCY 311
Query: 698 SMF-YTSLGRLLMVDLGEDEDRFEAFMLPLTSNYPVYTPIFLAAVERWYAEPEVTTPILK 756
+ TSL ++ D E+ + + ML ++ + +V + K
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPML---------------SI-SNLTQEQVQDYVNK 355
Query: 757 LFAELVQNRSQRLQFDVSSPNGILLFREASKIICSYGSRILSVEVPDDKLYS-----HKL 811
+ L + Q ++S NG A ++ S G P LY K
Sbjct: 356 TNSHLPAGK----QVEISLVNG------AKNLVVS-GP-------PQS-LYGLNLTLRKA 396
Query: 812 KGIS------ICFSMLKAALCGGYVNFGV-F-RLYGDEALDNALKTFVKLLLSINQSDL- 862
K S I FS K ++ F A D K VK +S N D+
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 863 ---------LDYPKLSQTYY-VLLECLAQD--HMSFLASLEPTVFLYIL----SSISEGL 906
D LS + +++C+ + + T +IL S GL
Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT---HILDFGPGGAS-GL 512
Query: 907 TALDTMVCTGCC------ATLDHIVT--YLFKQ 931
L G TLD Y FKQ
Sbjct: 513 GVLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 49.3 bits (117), Expect = 8e-06
Identities = 88/592 (14%), Positives = 178/592 (30%), Gaps = 201/592 (33%)
Query: 73 TRPKTAILMLNMGGPTHTDQVSEYLHRIMTD-RD----MIQLPVQGK------------- 114
TRP L L+ G H V I + ++ ++ P +G
Sbjct: 6 TRP----LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 115 ---LGPYIARRRTPEVQKKYQEIGGGSPILKW-------TQLQGEKMANKLNSVCPEYGP 164
LG Y++ P ++ ++ L L+G N +
Sbjct: 62 GKFLG-YVSSLVEPSKVGQFDQV------LNLCLTEFENCYLEG-------NDI------ 101
Query: 165 HKHYVAFRYADPLTEETLDQIEKDGAERVVIFSQYPQDGAERVVIFSQYPQYS------C 218
H +A A L E ++ + +I + R++ + + S
Sbjct: 102 --HALA---AKLLQENDTTLVKT----KELIKNYI----TARIMAKRPFDKKSNSALFRA 148
Query: 219 ATSGSSLNAIYTHLNKKGSPSNISWS-LIDRWSTHPLLCKVFAERIQEELKQFPVEVQKD 277
G++ + +G+ ++ + L D + T+ +L + E L + + D
Sbjct: 149 VGEGNA--QLVAIFGGQGN-TDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL-IRTTLD 204
Query: 278 VIILFSAHSLPLRALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQVQKNS-----K 332
+F+ L + + + + S VIQ +++++ K +
Sbjct: 205 AEKVFT-QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ-LAHYVVTAKLLGFTPGE 262
Query: 333 VYRRLNEVLGLCDEATVLSVFVRKIITNLKYWGRSEQIITKTLQLLNDLSVGYSCVR--- 389
+ L G + V +V + + + W + K + +L +G C
Sbjct: 263 LRSYLKGATG-HSQGLVTAVAIAETDS----WESFFVSVRKAITVL--FFIGVRCYEAYP 315
Query: 390 ------KLVKLDEVQFMLNNHTIPTSWRPAF----LDPNTLKLF---FN--------LYH 428
+++ D ++ NN +P+ P L ++ + N +
Sbjct: 316 NTSLPPSILE-DSLE---NNEGVPS---PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368
Query: 429 SL------------PSTLSHLSEHF--------------PFLGNNVADVSEMRCR-SM-- 459
SL P +L L+ PF SE + + S
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF--------SERKLKFSNRF 420
Query: 460 ------FYTSL----GRLLMVDLGEDEDRFEAFMLPLTSRLTWLVYIIGAAVGGRVSFNS 509
F++ L L+ DL ++ F A + + VY
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP------VY----------DTFD 464
Query: 510 NEDHDAMDGELVCRVLQLMNLTDP------------RLL--GPG--PGCEKL 545
D + G + R++ + + P +L GPG G L
Sbjct: 465 GSDLRVLSGSISERIVDCI-IRLPVKWETTTQFKATHILDFGPGGASGLGVL 515
Score = 33.1 bits (75), Expect = 0.64
Identities = 46/294 (15%), Positives = 88/294 (29%), Gaps = 91/294 (30%)
Query: 788 IICSYGSRILSVEVPDDKLYSH--KLKGISICFSML----------------KAALCGGY 829
+ S+GS + VP + +L+ F+ + A L G +
Sbjct: 9 LTLSHGSLEHVLLVPTA-SFFIASQLQE---QFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 830 VNF----------GVFRLYGDEALDNALKTF-------------VKLLLSINQSDLLDYP 866
+ + G F D+ L+ L F LL N + L+
Sbjct: 65 LGYVSSLVEPSKVGQF----DQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 867 KLSQTYYVLLECLAQ----DHMSFL--ASLEPTVFLYIL----SSISEGLTALDTMVCTG 916
+L + Y + S L A E L + + + L + T
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 917 CCATLDHIVTYLFKQITNKGKKKSGRPGAS----PTGTDM--FLQVLEVRPEILQQILST 970
+V L K + + G ++ +L+ P+ + L +
Sbjct: 181 -----HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD--KDYLLS 233
Query: 971 VLNIIMFEDCRNQWSMSRPLLGLI-LLNEEYFNQLRENIVRGQPPDKQASMVQW 1023
+ +S PL+G+I L + Y + + G P + S ++
Sbjct: 234 I-------------PISCPLIGVIQLAH--YVVTAK---LLGFTPGELRSYLKG 269
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation,
GTP-binding, HOST-virus interaction, nucleotide-binding,
phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB:
3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 39.9 bits (92), Expect = 0.005
Identities = 63/471 (13%), Positives = 134/471 (28%), Gaps = 46/471 (9%)
Query: 571 PAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRSLFSNAERARFLTQLVNGVKQ 630
FL + F H + +A ++IA R F + + + +
Sbjct: 561 WKFLKT-VVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNN 619
Query: 631 ILQNPQGLSDANNYHEFCRLLARLKSNYQLVKPGCRRLSALQYLEFPSEHFPFLGNNVAD 690
I L H F + + + + P++ + +
Sbjct: 620 INTIICDLQP-QQVHTFYEAVGYMIGAQTDQTVQEHLIEKY--MLLPNQVWDSIIQQATK 676
Query: 691 VSEMRCRSMFYTSLGRLLMVDLGEDEDRFEAFMLPLTSNYPVYTPIFLAAVERWYAEPEV 750
++ LG +L ++ + F++ L Y ++ E
Sbjct: 677 NVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSE-------- 728
Query: 751 TTPILKLFAELVQNRSQRLQFDVSSPNGILLFREASKIICSYGSRILSVEVPDDKLYSHK 810
+ +Q + + + + RE K+I + SR ++ +
Sbjct: 729 ------NISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPL 782
Query: 811 LKGISICFSMLKAALCGG---YVNFGVFRLYGDEALDNALKTFVKLL---LSINQSDLLD 864
L + I + A + G + F + L++ D +
Sbjct: 783 LDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEE 842
Query: 865 YPKLSQTYYVLLECLAQDHMSFLASLEPTVFLYILSSISEGLTALDTMVCTGCCATLDHI 924
YP+ +++LL+ + ++ P F +L SI V L +
Sbjct: 843 YPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTL 902
Query: 925 VTYLFKQITNKGKKKSGRPGASPTGTDMFLQVLEVRPEILQQILSTVLNIIMFEDCRNQW 984
+ + F Q +ILQ I S V +
Sbjct: 903 LQNV---------------AQEEAAAQSFYQTYFC--DILQHIFSVVTDTSHTAGLTMHA 945
Query: 985 SMSRPLLGLILLNEEYFNQLRENIVRGQPPDKQASMVQWFENLMNSIERNL 1035
S+ + L+ ++ + G P + Q + + NL+ S +L
Sbjct: 946 SILAYMFNLV-----EEGKISTPLNPGNPVNNQMFIQDYVANLLKSAFPHL 991
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 36.4 bits (84), Expect = 0.057
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 23/90 (25%)
Query: 681 FPF-----LGNNVADV---SEMRCRSMFYTSLGRLL--MVDLGEDED---RFEAFMLPLT 727
PF G + + SE R M T++ R++ + R +LP++
Sbjct: 570 IPFAAIPEQGIELEHIDSKSEFAHRIML-TNILRMMGCVKKQKSARGIETRPAQVILPMS 628
Query: 728 SNYPV------YTPIFLA---AVERWYAEP 748
N+ Y+ L+ RW++E
Sbjct: 629 PNHGTFGGDGMYSESKLSLETLFNRWHSES 658
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat
repeat, transcription factor, nucleus; 2.85A
{Saccharomyces cerevisiae}
Length = 649
Score = 32.2 bits (72), Expect = 1.1
Identities = 41/310 (13%), Positives = 83/310 (26%), Gaps = 41/310 (13%)
Query: 354 VRKIITNLKYWGRSEQIITKTLQLLNDLSVGYS-----CVRKLVK--LDEVQFMLNNH-- 404
++ II K+W ++K + + L LV + ++ + +H
Sbjct: 138 IQSIINFEKWWELPPHTLSKYIYFIKILCSSIPKWWQDVSMILVSCFILPIKQTVCHHDM 197
Query: 405 ------TIPTSWRPAFLDPNTLKLFFNLYHSLPSTLS------HLSEHFPFLGNNVADVS 452
IP+S F+D K F N + ++ L + LG + +
Sbjct: 198 LKYFLRMIPSS--MGFIDTYLAKFFPNKNDTRRKLVNYTSNLLKLRGYCSELGFQIWSLL 255
Query: 453 EMRCRSM------FYTSLGRLLMVDLGEDEDRFEAFMLPLTSRLTWLVYIIGAAVGGRVS 506
+ S+ L + D E+ D + L S + R
Sbjct: 256 IEKIISIDVELQNELDELDDDVDDDDLEEVDLEDDDDLDDDSGDDDDENCGNSNEELRSG 315
Query: 507 FNSNEDHDAMDGELVCRVLQLMNLTDPRLLGPGPGCEKLELAMLSFFEQFRKIYVGDQIP 566
D+ D +++ + G KL+ + + + +
Sbjct: 316 AADGSQSDSEDMDIIEGMDGTEEYNVELTQGIKELSTKLDSILTLVSTHVEEQVTPESLE 375
Query: 567 TSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRSLFSNAERARFLTQLVN 626
+ +F L + + +Q S FL L+
Sbjct: 376 --------SGEGVGVFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMDSFLVTLI- 426
Query: 627 GVKQILQNPQ 636
I
Sbjct: 427 ---DISFAVN 433
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 3.2
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 3/24 (12%)
Query: 543 EKLELAMLSFFEQFRKIYVGDQIP 566
EK L L + K+Y D P
Sbjct: 18 EKQALKKL---QASLKLYADDSAP 38
>2itb_A TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative ATTH, structural
genomics, joint center for structu genomics, JCSG; 2.05A
{Pseudomonas putida} SCOP: a.25.1.7
Length = 206
Score = 29.6 bits (66), Expect = 3.9
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 231 HLNKKGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQF 270
+ K + + + SLI +++TH L + + +EEL
Sbjct: 37 NCEFKAAST--ALSLIAKYNTHLDLINMMSRLAREELVHH 74
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A
{Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Length = 240
Score = 29.8 bits (66), Expect = 4.4
Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 20/104 (19%)
Query: 92 QVSEYLHRIMTDRDMIQLPVQGKLGPYIARRRTPEVQKKYQE------------IGGGSP 139
EYLH I + D+ +L ++ ++ R + + ++ +GG
Sbjct: 85 PKCEYLHHIPDEEDIGKLALRTEVLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDG 144
Query: 140 ILKWTQLQGEKMANKLNSVCPEYGP-------HKHYVAF-RYAD 175
L L+ ++ +++ V G F ++
Sbjct: 145 ALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKY 188
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural
genomics, PSI-2, protein structure initiative; 2.40A
{Pyrococcus furiosus}
Length = 111
Score = 28.6 bits (64), Expect = 4.5
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 986 MSRPLLGLILLNEEYFNQLRENIVRGQP-----PDKQASMVQWFENLMNSIER 1033
+ R +G+IL+ E ++ P PDK S+ + L + + R
Sbjct: 44 LERDDVGIILITERLAQRIGSLPEVKFPIILQIPDKFGSIYG-EDILRDVVRR 95
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex;
2.3A {Homo sapiens} SCOP: a.118.1.19
Length = 321
Score = 29.9 bits (67), Expect = 4.8
Identities = 14/76 (18%), Positives = 30/76 (39%)
Query: 855 LSINQSDLLDYPKLSQTYYVLLECLAQDHMSFLASLEPTVFLYILSSISEGLTALDTMVC 914
L++ D +YP+ +++LL+ + ++ PT F +L SI V
Sbjct: 125 LNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVA 184
Query: 915 TGCCATLDHIVTYLFK 930
L ++ + +
Sbjct: 185 DTGLQILFTLLQNVAQ 200
>1z3i_X Similar to RAD54-like; recombination ATPase helicase,
recombination-DNA binding COM; 3.00A {Danio rerio} SCOP:
c.37.1.19 c.37.1.19
Length = 644
Score = 29.6 bits (67), Expect = 6.1
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 182 LDQIEKDGAERVVIFSQYPQ 201
L +++VV+ S Y Q
Sbjct: 408 LAMTRTTTSDKVVLVSNYTQ 427
>1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma brucei}
SCOP: d.142.2.4
Length = 277
Score = 29.1 bits (64), Expect = 6.4
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 13/112 (11%)
Query: 92 QVSEYLHRIMTDRDMIQLPVQGKL-GPYIARRRTPEVQKKYQEIGGGSPILKWTQLQGEK 150
+++ L + + +L + G+L G P+ +K G + Q+Q E
Sbjct: 90 ILNDLLKQKYGLSRVGRLVLNGELFGAKYKHPLVPKSEKWCTLPNGKKFPIAGVQIQREP 149
Query: 151 MANKLNSVCPEYGPHKHYVAF--RYADPLTEETLDQIEKDGAERVVIFSQYP 200
P+Y P H+ AF +Y+ EE + D E V S+ P
Sbjct: 150 F--------PQYSPELHFFAFDIKYSVSGAEEDFVLLGYD--EFVEFSSKVP 191
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.410
Gapped
Lambda K H
0.267 0.0484 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,754,498
Number of extensions: 963966
Number of successful extensions: 1913
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1888
Number of HSP's successfully gapped: 33
Length of query: 1041
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 938
Effective length of database: 3,825,930
Effective search space: 3588722340
Effective search space used: 3588722340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.3 bits)