RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15564
         (1041 letters)



>d2hrca1 c.92.1.1 (A:65-423) Ferrochelatase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 359

 Score =  156 bits (396), Expect = 2e-42
 Identities = 109/217 (50%), Positives = 146/217 (67%), Gaps = 14/217 (6%)

Query: 74  RPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPVQGKLGPYIARRRTPEVQKKYQE 133
           +PKT ILMLNMGGP     V ++L R+  DRD++ LP+Q KL P+IA+R TP++Q++Y+ 
Sbjct: 2   KPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRLTPKIQEQYRR 61

Query: 134 IGGGSPILKWTQLQGEKMANKLNSVCPEYGPHKHYVAFRYADPLTEETLDQIEKDGAERV 193
           IGGGSPI  WT  QGE M   L+ + P   PHK+Y+ FRY  PLTEE ++          
Sbjct: 62  IGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIE---------- 111

Query: 194 VIFSQYPQDGAERVVIFSQYPQYSCATSGSSLNAIYTHLNKKGSPSNISWSLIDRWSTHP 253
               +  +DG ER + F+QYPQYSC+T+GSSLNAIY + N+ G    + WS IDRW TH 
Sbjct: 112 ----EMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHH 167

Query: 254 LLCKVFAERIQEELKQFPVEVQKDVIILFSAHSLPLR 290
           LL + FA+ I +EL  FP+E + +V+ILFSAHSLP+ 
Sbjct: 168 LLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMS 204


>d1lbqa_ c.92.1.1 (A:) Ferrochelatase {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 356

 Score =  148 bits (374), Expect = 2e-39
 Identities = 94/221 (42%), Positives = 142/221 (64%), Gaps = 16/221 (7%)

Query: 74  RPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLP--VQGKLGPYIARRRTPEVQKKY 131
           R  T I+++NMGGP+  ++  ++L+++  D D+I +    Q  +  YIA+ RTP+++K+Y
Sbjct: 1   RSPTGIVLMNMGGPSKVEETYDFLYQLFADNDLIPISAKYQKTIAKYIAKFRTPKIEKQY 60

Query: 132 QEIGGGSPILKWTQLQGEKMANKLNSVCPEYGPHKHYVAFRYADPLTEETLDQIEKDGAE 191
           +EIGGGSPI KW++ Q  ++   L+  CPE  PHK YVAFRYA PLT ET          
Sbjct: 61  REIGGGSPIRKWSEYQATEVCKILDKTCPETAPHKPYVAFRYAKPLTAETYK-------- 112

Query: 192 RVVIFSQYPQDGAERVVIFSQYPQYSCATSGSSLNAIYTHLNKKGSPSNISWSLIDRWST 251
                 Q  +DG ++ V FSQYP +S +T+GSS+N ++  +    S  +ISWS+IDRW T
Sbjct: 113 ------QMLKDGVKKAVAFSQYPHFSYSTTGSSINELWRQIKALDSERSISWSVIDRWPT 166

Query: 252 HPLLCKVFAERIQEELKQFPVEVQKDVIILFSAHSLPLRAL 292
           +  L K F+E I ++L++FP  V+  V++LFSAHSLP+  +
Sbjct: 167 NEGLIKAFSENITKKLQEFPQPVRDKVVLLFSAHSLPMDVV 207


>d2hk6a1 c.92.1.1 (A:2-310) Ferrochelatase {Bacillus subtilis
           [TaxId: 1423]}
          Length = 309

 Score =  120 bits (302), Expect = 2e-30
 Identities = 42/220 (19%), Positives = 84/220 (38%), Gaps = 31/220 (14%)

Query: 73  TRPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPVQGKLGPYIARRRTPEVQKKYQ 132
           +R K  +L++  G P   + +  Y   I   R                     +++ +Y+
Sbjct: 1   SRKKMGLLVMAYGTPYKEEDIERYYTHIRRGR-------------KPEPEMLQDLKDRYE 47

Query: 133 EIGGGSPILKWTQLQGEKMANKLNSVCPEYGPHKHYVAFRYADPLTEETLDQIEKDGAER 192
            IGG SP+ + T+ Q   +   LN +       K Y+  ++ +P  E+ + ++ K     
Sbjct: 48  AIGGISPLAQITEQQAHNLEQHLNEIQD-EITFKAYIGLKHIEPFIEDAVAEMHK----- 101

Query: 193 VVIFSQYPQDGAERVVIFSQYPQYSCATSGSSLNAIYTHLNKKGSPSNISWSLIDRWSTH 252
                    DG    V     P +S  +  S          K G     + + ++ W   
Sbjct: 102 ---------DGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKLGGL---TITSVESWYDE 149

Query: 253 PLLCKVFAERIQEELKQFPVEVQKDVIILFSAHSLPLRAL 292
           P     + +R++E     P + +++ +++ SAHSLP +  
Sbjct: 150 PKFVTYWVDRVKETYASMPEDERENAMLIVSAHSLPEKIK 189



 Score = 47.8 bits (113), Expect = 4e-06
 Identities = 8/33 (24%), Positives = 14/33 (42%)

Query: 31 SKPKTAILMLNMGGPTHTDQVSEYLHRIMTDRD 63
          S+ K  +L++  G P   + +  Y   I   R 
Sbjct: 1  SRKKMGLLVMAYGTPYKEEDIERYYTHIRRGRK 33


>d1mgra_ d.1.1.2 (A:) Cytotoxic RNase Sa3 {Streptomyces aureofaciens
           [TaxId: 1894]}
          Length = 97

 Score = 27.8 bits (62), Expect = 2.0
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 283 SAHSLPLRALVTLFARITKLGWFDSEKDEFVFRN 316
              +LP +A  TL   I + G F   +D  VF+N
Sbjct: 8   CYSALPSQAHDTL-DLIDEGGPFPYSQDGVVFQN 40


>d1lnia_ d.1.1.2 (A:) RNase Sa {Streptomyces aureofaciens [TaxId:
           1894]}
          Length = 96

 Score = 27.8 bits (62), Expect = 2.4
 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 283 SAHSLPLRALVTLFARITKLGWFDSEKDEFVFRN 316
              +LP  A  TL   I   G F   +D  VF+N
Sbjct: 7   CLSALPPEATDTL-NLIASDGPFPYSQDGVVFQN 39


>d1pn2a1 d.38.1.4 (A:4-151) 2-enoyl-coa hydratase domain of
           multifunctional peroxisomal
           hydratase-dehydrogenase-epimerase {Yeast (Candida
           tropicalis) [TaxId: 5482]}
          Length = 148

 Score = 28.3 bits (63), Expect = 2.7
 Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 2/53 (3%)

Query: 473 GEDEDRFEAFMLPLTSRLTWLVYIIG--AAVGGRVSFNSNEDHDAMDGELVCR 523
           GE   +  ++  P    +      I         V  + ++  D   GEL+  
Sbjct: 71  GEHYLKVHSWPPPTEGEIKTTFEPIATTPKGTNVVIVHGSKSVDNKSGELIYS 123


>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 119

 Score = 26.9 bits (59), Expect = 7.2
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 176 PLTEETLDQIEKDGAERVVIFSQYPQ 201
           P+   T+D   K   + V++ S  P+
Sbjct: 15  PVEASTVDDWIKRVGDGVILLSSDPR 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,820,805
Number of extensions: 181116
Number of successful extensions: 485
Number of sequences better than 10.0: 1
Number of HSP's gapped: 481
Number of HSP's successfully gapped: 12
Length of query: 1041
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 946
Effective length of database: 1,103,246
Effective search space: 1043670716
Effective search space used: 1043670716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.7 bits)