BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15568
(1231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JE8|A Chain A, Structure Of A Beta-Mannosidase From Bacteroides
Thetaiotaomicron
pdb|2JE8|B Chain B, Structure Of A Beta-Mannosidase From Bacteroides
Thetaiotaomicron
Length = 848
Score = 221 bits (563), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 180/577 (31%), Positives = 262/577 (45%), Gaps = 92/577 (15%)
Query: 3 RKMQASFAWDWGPAMPSVGICDIYHIIIENESKQNLELGEKSVELEGYHVARIRDILTDI 62
RK S+ WDWG M + G+ + V L Y +A I D
Sbjct: 167 RKAPYSYGWDWGIRMVTSGVW-------------------RPVTLRFYDIATISDY---- 203
Query: 63 TYHEDLKSWHLSVRVILEAGLSQAVVKAKLTAELAV-----GKKPLRVDSLVNAEPSHGE 117
Y L + R+ E ++Q +V K+ AE+ V G V V +P
Sbjct: 204 -YVRQLSLTDENARLSNELIVNQ-IVPQKIPAEVRVNVSLNGTTVTEVKQQVTLQPGINH 261
Query: 118 IEVVSTLMVLASEVELWWPNGYGEQPLYNLQITLASGVEM-STKSIKIGFRTVELIQDHV 176
I TL + W PNG+G LY+ +A G + + +S +IG RT+ ++ +
Sbjct: 262 I----TLPAEVTNPVRWMPNGWGTPTLYDFSAQIACGDRIVAEQSHRIGLRTIRVVNEKD 317
Query: 177 DPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNESTIRDLLVSTKEANMNMLRV 236
+ G FYFEVN +P+++KG+N IP D L E + L KEANMNM+R+
Sbjct: 318 -----KDGESFYFEVNGIPMFAKGANYIPQDALLPNVTTER-YQTLFRDMKEANMNMVRI 371
Query: 237 WGGGVYMSDYFYETCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPCI 296
WGGG Y ++ FY+ DE GIL+WQD MFAC YP+ PTFL+ V +E +RR+++H +
Sbjct: 372 WGGGTYENNLFYDLADENGILVWQDFMFACTPYPSDPTFLKRVEAEAVYNIRRLRNHASL 431
Query: 297 AVWAGNNE-MEAHNY---------DYYQNL---WD-------PSTAPKSRFCSEFGIQSL 336
A+W GNNE +EA Y + YQ L +D PST K F + S
Sbjct: 432 AMWCGNNEILEALKYWGFEKKFTPEVYQGLMHGYDKLFRELLPSTV-KEFDSDRFYVHSS 490
Query: 337 PQLSTFQKVAT--EADLASW-----RTPFFDSRQHLAGGTGILESSVGHQFEIGNLTLEY 389
P L+ + + + D +W + PF + L S G Q T+
Sbjct: 491 PYLANWGRPESWGTGDSHNWGVWYGKKPF----ESLDTDLPRFMSEFGFQSFPEMKTIAA 546
Query: 390 FAYLSQCMAAIHALHGRYATDQAGAIKTITEQMRRDKGVLREDGSGHNMGALYWQLNDIY 449
FA ++ + ++ I M RD ++ E L +
Sbjct: 547 FAAPEDYQIESEVMNAHQKSSIGNSL--IRTYMERDY-IIPESFEDFVYVGL------VL 597
Query: 450 QAGAIKTITEQMRRDKGVLREDGSGHNMGALYWQLNDVWQAPTWSSIDYDGNWKMLHYFA 509
Q ++ E RR++ + MG LYWQLND W +WSSIDY GNWK LHY A
Sbjct: 598 QGQGMRHGLEAHRRNR--------PYCMGTLYWQLNDSWPVVSWSSIDYYGNWKALHYQA 649
Query: 510 RKFFAPVLISPVLNVSSRTLEVVLLNDPNRPLHNVTI 546
++ FAPVLI+P+ S L V L++D + +T+
Sbjct: 650 KRAFAPVLINPIQQNDS--LSVYLISDRLDTMEQMTL 684
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 899 DYDGNWKMLHYFARKFFAPVLISPVFNVSSRTLEVVLLNDPNRPLHNVTI 948
DY GNWK LHY A++ FAPVLI+P+ + +L V L++D + +T+
Sbjct: 637 DYYGNWKALHYQAKRAFAPVLINPI--QQNDSLSVYLISDRLDTMEQMTL 684
>pdb|2VJX|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VJX|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VL4|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VL4|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VMF|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VMF|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VO5|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VO5|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VOT|A Chain A, Structural And Biochemical Evidence For A Boat-like
Transition State In Beta-mannosidases
pdb|2VOT|B Chain B, Structural And Biochemical Evidence For A Boat-like
Transition State In Beta-mannosidases
pdb|2VQT|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VQT|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VR4|A Chain A, Transition-state Mimicry In Mannoside Hydrolysis:
Characterisation Of Twenty Six Inhibitors And Insight
Into Binding From Linear Free Energy Relationships And
3-d Structure
pdb|2VR4|B Chain B, Transition-state Mimicry In Mannoside Hydrolysis:
Characterisation Of Twenty Six Inhibitors And Insight
Into Binding From Linear Free Energy Relationships And
3-d Structure
Length = 846
Score = 221 bits (562), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 180/577 (31%), Positives = 262/577 (45%), Gaps = 92/577 (15%)
Query: 3 RKMQASFAWDWGPAMPSVGICDIYHIIIENESKQNLELGEKSVELEGYHVARIRDILTDI 62
RK S+ WDWG M + G+ + V L Y +A I D
Sbjct: 165 RKAPYSYGWDWGIRMVTSGVW-------------------RPVTLRFYDIATISDY---- 201
Query: 63 TYHEDLKSWHLSVRVILEAGLSQAVVKAKLTAELAV-----GKKPLRVDSLVNAEPSHGE 117
Y L + R+ E ++Q +V K+ AE+ V G V V +P
Sbjct: 202 -YVRQLSLTDENARLSNELIVNQ-IVPQKIPAEVRVNVSLNGTTVTEVKQQVTLQPGINH 259
Query: 118 IEVVSTLMVLASEVELWWPNGYGEQPLYNLQITLASGVEM-STKSIKIGFRTVELIQDHV 176
I TL + W PNG+G LY+ +A G + + +S +IG RT+ ++ +
Sbjct: 260 I----TLPAEVTNPVRWMPNGWGTPTLYDFSAQIACGDRIVAEQSHRIGLRTIRVVNEKD 315
Query: 177 DPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNESTIRDLLVSTKEANMNMLRV 236
+ G FYFEVN +P+++KG+N IP D L E + L KEANMNM+R+
Sbjct: 316 -----KDGESFYFEVNGIPMFAKGANYIPQDALLPNVTTER-YQTLFRDMKEANMNMVRI 369
Query: 237 WGGGVYMSDYFYETCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPCI 296
WGGG Y ++ FY+ DE GIL+WQD MFAC YP+ PTFL+ V +E +RR+++H +
Sbjct: 370 WGGGTYENNLFYDLADENGILVWQDFMFACTPYPSDPTFLKRVEAEAVYNIRRLRNHASL 429
Query: 297 AVWAGNNE-MEAHNY---------DYYQNL---WD-------PSTAPKSRFCSEFGIQSL 336
A+W GNNE +EA Y + YQ L +D PST K F + S
Sbjct: 430 AMWCGNNEILEALKYWGFEKKFTPEVYQGLMHGYDKLFRELLPSTV-KEFDSDRFYVHSS 488
Query: 337 PQLSTFQKVAT--EADLASW-----RTPFFDSRQHLAGGTGILESSVGHQFEIGNLTLEY 389
P L+ + + + D +W + PF + L S G Q T+
Sbjct: 489 PYLANWGRPESWGTGDSHNWGVWYGKKPF----ESLDTDLPRFMSEFGFQSFPEMKTIAA 544
Query: 390 FAYLSQCMAAIHALHGRYATDQAGAIKTITEQMRRDKGVLREDGSGHNMGALYWQLNDIY 449
FA ++ + ++ I M RD ++ E L +
Sbjct: 545 FAAPEDYQIESEVMNAHQKSSIGNSL--IRTYMERDY-IIPESFEDFVYVGL------VL 595
Query: 450 QAGAIKTITEQMRRDKGVLREDGSGHNMGALYWQLNDVWQAPTWSSIDYDGNWKMLHYFA 509
Q ++ E RR++ + MG LYWQLND W +WSSIDY GNWK LHY A
Sbjct: 596 QGQGMRHGLEAHRRNR--------PYCMGTLYWQLNDSWPVVSWSSIDYYGNWKALHYQA 647
Query: 510 RKFFAPVLISPVLNVSSRTLEVVLLNDPNRPLHNVTI 546
++ FAPVLI+P+ S L V L++D + +T+
Sbjct: 648 KRAFAPVLINPIQQNDS--LSVYLISDRLDTMEQMTL 682
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 899 DYDGNWKMLHYFARKFFAPVLISPVFNVSSRTLEVVLLNDPNRPLHNVTI 948
DY GNWK LHY A++ FAPVLI+P+ + +L V L++D + +T+
Sbjct: 635 DYYGNWKALHYQAKRAFAPVLINPI--QQNDSLSVYLISDRLDTMEQMTL 682
>pdb|2WBK|A Chain A, Structure Of The Michaelis Complex Of Beta-Mannosidase,
Man2a, Provides Insight Into The Conformational
Itinerary Of Mannoside Hydrolysis
pdb|2WBK|B Chain B, Structure Of The Michaelis Complex Of Beta-Mannosidase,
Man2a, Provides Insight Into The Conformational
Itinerary Of Mannoside Hydrolysis
Length = 847
Score = 221 bits (562), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 180/577 (31%), Positives = 262/577 (45%), Gaps = 92/577 (15%)
Query: 3 RKMQASFAWDWGPAMPSVGICDIYHIIIENESKQNLELGEKSVELEGYHVARIRDILTDI 62
RK S+ WDWG M + G+ + V L Y +A I D
Sbjct: 165 RKAPYSYGWDWGIRMVTSGVW-------------------RPVTLRFYDIATISDY---- 201
Query: 63 TYHEDLKSWHLSVRVILEAGLSQAVVKAKLTAELAV-----GKKPLRVDSLVNAEPSHGE 117
Y L + R+ E ++Q +V K+ AE+ V G V V +P
Sbjct: 202 -YVRQLSLTDENARLSNELIVNQ-IVPQKIPAEVRVNVSLNGTTVTEVKQQVTLQPGINH 259
Query: 118 IEVVSTLMVLASEVELWWPNGYGEQPLYNLQITLASGVEM-STKSIKIGFRTVELIQDHV 176
I TL + W PNG+G LY+ +A G + + +S +IG RT+ ++ +
Sbjct: 260 I----TLPAEVTNPVRWMPNGWGTPTLYDFSAQIACGDRIVAEQSHRIGLRTIRVVNEKD 315
Query: 177 DPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNESTIRDLLVSTKEANMNMLRV 236
+ G FYFEVN +P+++KG+N IP D L E + L KEANMNM+R+
Sbjct: 316 -----KDGESFYFEVNGIPMFAKGANYIPQDALLPNVTTER-YQTLFRDMKEANMNMVRI 369
Query: 237 WGGGVYMSDYFYETCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPCI 296
WGGG Y ++ FY+ DE GIL+WQD MFAC YP+ PTFL+ V +E +RR+++H +
Sbjct: 370 WGGGTYENNLFYDLADENGILVWQDFMFACTPYPSDPTFLKRVEAEAVYNIRRLRNHASL 429
Query: 297 AVWAGNNE-MEAHNY---------DYYQNL---WD-------PSTAPKSRFCSEFGIQSL 336
A+W GNNE +EA Y + YQ L +D PST K F + S
Sbjct: 430 AMWCGNNEILEALKYWGFEKKFTPEVYQGLMHGYDKLFRELLPSTV-KEFDSDRFYVHSS 488
Query: 337 PQLSTFQKVAT--EADLASW-----RTPFFDSRQHLAGGTGILESSVGHQFEIGNLTLEY 389
P L+ + + + D +W + PF + L S G Q T+
Sbjct: 489 PYLANWGRPESWGTGDSHNWGVWYGKKPF----ESLDTDLPRFMSQFGFQSFPEMKTIAA 544
Query: 390 FAYLSQCMAAIHALHGRYATDQAGAIKTITEQMRRDKGVLREDGSGHNMGALYWQLNDIY 449
FA ++ + ++ I M RD ++ E L +
Sbjct: 545 FAAPEDYQIESEVMNAHQKSSIGNSL--IRTYMERDY-IIPESFEDFVYVGL------VL 595
Query: 450 QAGAIKTITEQMRRDKGVLREDGSGHNMGALYWQLNDVWQAPTWSSIDYDGNWKMLHYFA 509
Q ++ E RR++ + MG LYWQLND W +WSSIDY GNWK LHY A
Sbjct: 596 QGQGMRHGLEAHRRNR--------PYCMGTLYWQLNDSWPVVSWSSIDYYGNWKALHYQA 647
Query: 510 RKFFAPVLISPVLNVSSRTLEVVLLNDPNRPLHNVTI 546
++ FAPVLI+P+ S L V L++D + +T+
Sbjct: 648 KRAFAPVLINPIQQNDS--LSVYLISDRLDTMEQMTL 682
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 899 DYDGNWKMLHYFARKFFAPVLISPVFNVSSRTLEVVLLNDPNRPLHNVTI 948
DY GNWK LHY A++ FAPVLI+P+ + +L V L++D + +T+
Sbjct: 635 DYYGNWKALHYQAKRAFAPVLINPI--QQNDSLSVYLISDRLDTMEQMTL 682
>pdb|2JI4|A Chain A, Human Phosphoribosylpyrophosphate Synthetase - Associated
Protein 41 (Pap41)
Length = 379
Score = 218 bits (556), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 135/273 (49%), Positives = 167/273 (61%), Gaps = 50/273 (18%)
Query: 966 TPLVTVKLCAAEEIQGFFDCPVDNLRASPFLLQYIQDSV------VVTNTIPHDVQKLQC 1019
T L+T+ L +EIQGFF+ PVDNLRASPFLLQYIQ+ + V+ P ++ Q
Sbjct: 150 THLITMDL-HQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQS 208
Query: 1020 PKIKT-VDISILLSEAIRRMHNKESMSYLFRNVDGRXXXXXXXXXXXXXXXVDLVTKTMP 1078
+ + I+++ EA + ES DLV
Sbjct: 209 FAERLRLGIAVIHGEA----QDAES---------------------------DLV----- 232
Query: 1079 SVDGRAXXXXXXXXXXXXRTMEMDVGVPQHPAKEKPPISVVGDVGGRVAIXXXXXXXXXH 1138
DGR ++E+ + +P KEKPPI+VVGDVGGR+AI
Sbjct: 233 --DGRHSPPMVRSVAAIHPSLEIPMLIP----KEKPPITVVGDVGGRIAIIVDDIIDDVD 286
Query: 1139 SFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEVVVTNTIPHDVQKLQCPKI 1198
SF+AAAE LK+RGAYKI+V+ATHGLLSSDAP IEES IDEVVVTNTIPH+VQKLQCPKI
Sbjct: 287 SFLAAAETLKERGAYKIFVMATHGLLSSDAPRRIEESAIDEVVVTNTIPHEVQKLQCPKI 346
Query: 1199 KTVDISILLSEAIRRMHNKESMSYLFRNVTLED 1231
KTVDIS++LSEAIRR+HN ESMSYLFRN+ L+D
Sbjct: 347 KTVDISMILSEAIRRIHNGESMSYLFRNIGLDD 379
Score = 180 bits (456), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 82/103 (79%), Positives = 94/103 (91%)
Query: 573 KMRKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQDSI 632
KMRKRG IVSKLLA MMC +GL H+ITMDLHQKEIQGFF+ PVDNLRASPFLLQYIQ+ I
Sbjct: 128 KMRKRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEI 187
Query: 633 PDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIHGEQKESESD 675
PDY+NAVIVAK+P +AK+A S+AERLRLGIAVIHGE +++ESD
Sbjct: 188 PDYRNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESD 230
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/45 (73%), Positives = 42/45 (93%)
Query: 704 QIPDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIHGEQKESESD 748
+IPDY+NAVIVAK+P +AK+A S+AERLRLGIAVIHGE +++ESD
Sbjct: 186 EIPDYRNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESD 230
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 43/54 (79%)
Query: 844 KEKPPISVVGDVGGRVAIXXXXXXXXXHSFVAAAEVLKDRGAYKIYVLATHGLL 897
KEKPPI+VVGDVGGR+AI SF+AAAE LK+RGAYKI+V+ATHGLL
Sbjct: 259 KEKPPITVVGDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVMATHGLL 312
>pdb|2VQU|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VQU|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
Length = 846
Score = 216 bits (549), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 179/577 (31%), Positives = 261/577 (45%), Gaps = 92/577 (15%)
Query: 3 RKMQASFAWDWGPAMPSVGICDIYHIIIENESKQNLELGEKSVELEGYHVARIRDILTDI 62
RK S+ WDWG M + G+ + V L Y +A I D
Sbjct: 165 RKAPYSYGWDWGIRMVTSGVW-------------------RPVTLRFYDIATISDY---- 201
Query: 63 TYHEDLKSWHLSVRVILEAGLSQAVVKAKLTAELAV-----GKKPLRVDSLVNAEPSHGE 117
Y L + R+ E ++Q +V K+ AE+ V G V V +P
Sbjct: 202 -YVRQLSLTDENARLSNELIVNQ-IVPQKIPAEVRVNVSLNGTTVTEVKQQVTLQPGINH 259
Query: 118 IEVVSTLMVLASEVELWWPNGYGEQPLYNLQITLASGVEM-STKSIKIGFRTVELIQDHV 176
I TL + W PNG+G LY+ +A G + + +S +IG RT+ ++ +
Sbjct: 260 I----TLPAEVTNPVRWMPNGWGTPTLYDFSAQIACGDRIVAEQSHRIGLRTIRVVNEKD 315
Query: 177 DPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNESTIRDLLVSTKEANMNMLRV 236
+ G FYFEVN +P+++KG+N IP D L E + L KEANMNM+R+
Sbjct: 316 -----KDGESFYFEVNGIPMFAKGANYIPQDALLPNVTTER-YQTLFRDMKEANMNMVRI 369
Query: 237 WGGGVYMSDYFYETCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPCI 296
WGGG Y ++ FY+ DE GIL+WQD MFAC YP+ PTFL+ V +E +RR+++H +
Sbjct: 370 WGGGTYENNLFYDLADENGILVWQDFMFACTPYPSDPTFLKRVEAEAVYNIRRLRNHASL 429
Query: 297 AVWAGNNE-MEAHNY---------DYYQNL---WD-------PSTAPKSRFCSEFGIQSL 336
A+W GNNE +EA Y + YQ L +D PST K F + S
Sbjct: 430 AMWCGNNEILEALKYWGFEKKFTPEVYQGLMHGYDKLFRELLPSTV-KEFDSDRFYVHSS 488
Query: 337 PQLSTFQKVAT--EADLASW-----RTPFFDSRQHLAGGTGILESSVGHQFEIGNLTLEY 389
P L+ + + + D +W + PF + L S G Q T+
Sbjct: 489 PYLANWGRPESWGTGDSHNWGVWYGKKPF----ESLDTDLPRFMSEFGFQSFPEMKTIAA 544
Query: 390 FAYLSQCMAAIHALHGRYATDQAGAIKTITEQMRRDKGVLREDGSGHNMGALYWQLNDIY 449
FA ++ + ++ I M RD ++ E L +
Sbjct: 545 FAAPEDYQIESEVMNAHQKSSIGNSL--IRTYMERDY-IIPESFEDFVYVGL------VL 595
Query: 450 QAGAIKTITEQMRRDKGVLREDGSGHNMGALYWQLNDVWQAPTWSSIDYDGNWKMLHYFA 509
Q ++ E RR++ + MG LY QLND W +WSSIDY GNWK LHY A
Sbjct: 596 QGQGMRHGLEAHRRNR--------PYCMGTLYAQLNDSWPVVSWSSIDYYGNWKALHYQA 647
Query: 510 RKFFAPVLISPVLNVSSRTLEVVLLNDPNRPLHNVTI 546
++ FAPVLI+P+ S L V L++D + +T+
Sbjct: 648 KRAFAPVLINPIQQNDS--LSVYLISDRLDTMEQMTL 682
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 899 DYDGNWKMLHYFARKFFAPVLISPVFNVSSRTLEVVLLNDPNRPLHNVTI 948
DY GNWK LHY A++ FAPVLI+P+ + +L V L++D + +T+
Sbjct: 635 DYYGNWKALHYQAKRAFAPVLINPI--QQNDSLSVYLISDRLDTMEQMTL 682
>pdb|2C4K|A Chain A, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|B Chain B, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|C Chain C, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|D Chain D, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|E Chain E, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|F Chain F, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
Length = 370
Score = 190 bits (482), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 90/122 (73%), Positives = 106/122 (86%)
Query: 1105 VPQHPAKEKPPISVVGDVGGRVAIXXXXXXXXXHSFVAAAEVLKDRGAYKIYVLATHGLL 1164
+P AKEKPPI+VVGDVGGR+AI SFVAAAE+LK+RGAYKIYV+ATHG+L
Sbjct: 249 LPLMMAKEKPPITVVGDVGGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVMATHGIL 308
Query: 1165 SSDAPLLIEESPIDEVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLF 1224
S++AP LIEES +DEVVVTNT+PH+VQKLQCPKIKTVDIS++LSEAIRR+HN ESM+YLF
Sbjct: 309 SAEAPRLIEESSVDEVVVTNTVPHEVQKLQCPKIKTVDISLILSEAIRRIHNGESMAYLF 368
Query: 1225 RN 1226
RN
Sbjct: 369 RN 370
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/103 (76%), Positives = 89/103 (86%)
Query: 573 KMRKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQDSI 632
KMRKRG IV KLLA M+ +GL HIITMDLHQKEIQGFF PVDNLRASPFLLQYIQ+ I
Sbjct: 125 KMRKRGSIVCKLLASMLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEI 184
Query: 633 PDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIHGEQKESESD 675
P+Y+NAVIVAK+P AAK+A SYAERLRLG+AVIHGE + +E D
Sbjct: 185 PNYRNAVIVAKSPDAAKRAQSYAERLRLGLAVIHGEAQCTELD 227
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/49 (83%), Positives = 47/49 (95%)
Query: 1002 DSVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLFRN 1050
D VVVTNT+PH+VQKLQCPKIKTVDIS++LSEAIRR+HN ESM+YLFRN
Sbjct: 322 DEVVVTNTVPHEVQKLQCPKIKTVDISLILSEAIRRIHNGESMAYLFRN 370
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/55 (69%), Positives = 45/55 (81%)
Query: 843 SKEKPPISVVGDVGGRVAIXXXXXXXXXHSFVAAAEVLKDRGAYKIYVLATHGLL 897
+KEKPPI+VVGDVGGR+AI SFVAAAE+LK+RGAYKIYV+ATHG+L
Sbjct: 254 AKEKPPITVVGDVGGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVMATHGIL 308
Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 40/45 (88%)
Query: 704 QIPDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIHGEQKESESD 748
+IP+Y+NAVIVAK+P AAK+A SYAERLRLG+AVIHGE + +E D
Sbjct: 183 EIPNYRNAVIVAKSPDAAKRAQSYAERLRLGLAVIHGEAQCTELD 227
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 25/28 (89%)
Query: 977 EEIQGFFDCPVDNLRASPFLLQYIQDSV 1004
+EIQGFF PVDNLRASPFLLQYIQ+ +
Sbjct: 157 KEIQGFFSFPVDNLRASPFLLQYIQEEI 184
>pdb|2H08|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant Y146m
pdb|2H08|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant Y146m
Length = 326
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 82/127 (64%), Gaps = 9/127 (7%)
Query: 573 KMRKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQDSI 632
K + R I +KL+A M+ +G HIITMDLH +IQGFFD PVDNL A P +L++I+++I
Sbjct: 100 KDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLMAEPAVLKWIRENI 159
Query: 633 PDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIHGEQKESESDEYEVDLTGRPDKVYLSG 692
+++N IV+ + G AK+ TS A+RL + A+IH E+K++ EVD V +
Sbjct: 160 SEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIHKERKKAN----EVDRM-----VLVGD 210
Query: 693 LPDRVLI 699
+ DRV I
Sbjct: 211 VKDRVAI 217
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 71/120 (59%)
Query: 1110 AKEKPPISVVGDVGGRVAIXXXXXXXXXHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAP 1169
A E + +VGDV RVAI + AA+ L GA ++Y + THG+ S A
Sbjct: 199 ANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAI 258
Query: 1170 LLIEESPIDEVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLFRNVTL 1229
I + + VVVTNTIP + + C KI+ +DIS++L+EAIRR HN ES+SYLF +V L
Sbjct: 259 SRINNACFEAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRRTHNGESVSYLFSHVPL 318
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 40/50 (80%)
Query: 1002 DSVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLFRNV 1051
++VVVTNTIP + + C KI+ +DIS++L+EAIRR HN ES+SYLF +V
Sbjct: 267 EAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRRTHNGESVSYLFSHV 316
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 24/29 (82%)
Query: 976 AEEIQGFFDCPVDNLRASPFLLQYIQDSV 1004
A +IQGFFD PVDNL A P +L++I++++
Sbjct: 131 ASQIQGFFDIPVDNLMAEPAVLKWIRENI 159
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 704 QIPDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIHGEQKES 745
I +++N IV+ + G AK+ TS A+RL + A+IH E+K++
Sbjct: 158 NISEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIHKERKKA 199
Score = 33.5 bits (75), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 851 VVGDVGGRVAIXXXXXXXXXHSFVAAAEVLKDRGAYKIYVLATHGLL 897
+VGDV RVAI + AA+ L GA ++Y + THG+
Sbjct: 207 LVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIF 253
>pdb|2H06|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|2H06|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|2HCR|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 In Complex With Amp(Atp), Cadmium And
Sulfate Ion
pdb|2HCR|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 In Complex With Amp(Atp), Cadmium And
Sulfate Ion
pdb|3EFH|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|3EFH|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|3S5J|B Chain B, 2.0a Crystal Structure Of Human Phosphoribosyl
Pyrophosphate Synthetase 1
pdb|3S5J|A Chain A, 2.0a Crystal Structure Of Human Phosphoribosyl
Pyrophosphate Synthetase 1
Length = 326
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 82/127 (64%), Gaps = 9/127 (7%)
Query: 573 KMRKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQDSI 632
K + R I +KL+A M+ +G HIITMDLH +IQGFFD PVDNL A P +L++I+++I
Sbjct: 100 KDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIRENI 159
Query: 633 PDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIHGEQKESESDEYEVDLTGRPDKVYLSG 692
+++N IV+ + G AK+ TS A+RL + A+IH E+K++ EVD V +
Sbjct: 160 SEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIHKERKKAN----EVDRM-----VLVGD 210
Query: 693 LPDRVLI 699
+ DRV I
Sbjct: 211 VKDRVAI 217
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 71/120 (59%)
Query: 1110 AKEKPPISVVGDVGGRVAIXXXXXXXXXHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAP 1169
A E + +VGDV RVAI + AA+ L GA ++Y + THG+ S A
Sbjct: 199 ANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAI 258
Query: 1170 LLIEESPIDEVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLFRNVTL 1229
I + + VVVTNTIP + + C KI+ +DIS++L+EAIRR HN ES+SYLF +V L
Sbjct: 259 SRINNACFEAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRRTHNGESVSYLFSHVPL 318
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 40/50 (80%)
Query: 1002 DSVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLFRNV 1051
++VVVTNTIP + + C KI+ +DIS++L+EAIRR HN ES+SYLF +V
Sbjct: 267 EAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRRTHNGESVSYLFSHV 316
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 24/29 (82%)
Query: 976 AEEIQGFFDCPVDNLRASPFLLQYIQDSV 1004
A +IQGFFD PVDNL A P +L++I++++
Sbjct: 131 ASQIQGFFDIPVDNLYAEPAVLKWIRENI 159
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 704 QIPDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIHGEQKES 745
I +++N IV+ + G AK+ TS A+RL + A+IH E+K++
Sbjct: 158 NISEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIHKERKKA 199
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 851 VVGDVGGRVAIXXXXXXXXXHSFVAAAEVLKDRGAYKIYVLATHGLL 897
+VGDV RVAI + AA+ L GA ++Y + THG+
Sbjct: 207 LVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIF 253
>pdb|2H07|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant S132a
pdb|2H07|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant S132a
Length = 326
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 82/127 (64%), Gaps = 9/127 (7%)
Query: 573 KMRKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQDSI 632
K + R I +KL+A M+ +G HIITMDLH +IQGFFD PVDNL A P +L++I+++I
Sbjct: 100 KDKSRAPISAKLVANMLSVAGADHIITMDLHAAQIQGFFDIPVDNLYAEPAVLKWIRENI 159
Query: 633 PDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIHGEQKESESDEYEVDLTGRPDKVYLSG 692
+++N IV+ + G AK+ TS A+RL + A+IH E+K++ EVD V +
Sbjct: 160 SEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIHKERKKAN----EVDRM-----VLVGD 210
Query: 693 LPDRVLI 699
+ DRV I
Sbjct: 211 VKDRVAI 217
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 71/120 (59%)
Query: 1110 AKEKPPISVVGDVGGRVAIXXXXXXXXXHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAP 1169
A E + +VGDV RVAI + AA+ L GA ++Y + THG+ S A
Sbjct: 199 ANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAI 258
Query: 1170 LLIEESPIDEVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLFRNVTL 1229
I + + VVVTNTIP + + C KI+ +DIS++L+EAIRR HN ES+SYLF +V L
Sbjct: 259 SRINNACFEAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRRTHNGESVSYLFSHVPL 318
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 40/50 (80%)
Query: 1002 DSVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLFRNV 1051
++VVVTNTIP + + C KI+ +DIS++L+EAIRR HN ES+SYLF +V
Sbjct: 267 EAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRRTHNGESVSYLFSHV 316
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 30/37 (81%), Gaps = 1/37 (2%)
Query: 968 LVTVKLCAAEEIQGFFDCPVDNLRASPFLLQYIQDSV 1004
++T+ L AA+ IQGFFD PVDNL A P +L++I++++
Sbjct: 124 IITMDLHAAQ-IQGFFDIPVDNLYAEPAVLKWIRENI 159
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 704 QIPDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIHGEQKES 745
I +++N IV+ + G AK+ TS A+RL + A+IH E+K++
Sbjct: 158 NISEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIHKERKKA 199
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 851 VVGDVGGRVAIXXXXXXXXXHSFVAAAEVLKDRGAYKIYVLATHGLL 897
+VGDV RVAI + AA+ L GA ++Y + THG+
Sbjct: 207 LVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIF 253
>pdb|3DAH|A Chain A, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|B Chain B, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|C Chain C, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
Length = 319
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 64/109 (58%)
Query: 1116 ISVVGDVGGRVAIXXXXXXXXXHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEES 1175
++++G+V GR + + AA+VLK+RGA +++ ATH +LS A I S
Sbjct: 208 MNIIGEVEGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVLSGGAADRIAAS 267
Query: 1176 PIDEVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLF 1224
+DE+VVT+TIP + L CPKI+ + + LL+E R+ +S+ LF
Sbjct: 268 ALDELVVTDTIPLSAESLACPKIRALSSAGLLAETFSRIRRGDSVMSLF 316
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 17/126 (13%)
Query: 551 YAWNDTRPFRSVKTPLVTVVSGKMRKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQGF 610
YA D RP RS + I +K++A M+ +G++ IITMDLH +IQGF
Sbjct: 98 YARQDRRP-RSARV--------------AISAKVVANMLEIAGVERIITMDLHADQIQGF 142
Query: 611 FDCPVDNLRASPFLLQYIQDSIPDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIHGEQK 670
FD PVDN+ A+P LL ++ +Y + ++V+ + G +A + A++L +A+I +
Sbjct: 143 FDIPVDNIYATPILLGDLRKQ--NYPDLLVVSPDVGGVVRARALAKQLNCDLAIIDKRRP 200
Query: 671 ESESDE 676
++ E
Sbjct: 201 KANVAE 206
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 1002 DSVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLF 1048
D +VVT+TIP + L CPKI+ + + LL+E R+ +S+ LF
Sbjct: 270 DELVVTDTIPLSAESLACPKIRALSSAGLLAETFSRIRRGDSVMSLF 316
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 26/124 (20%)
Query: 953 YAWNDTRPFRSVKTPLVTVKLCA-----------------AEEIQGFFDCPVDNLRASPF 995
YA D RP RS + ++ K+ A A++IQGFFD PVDN+ A+P
Sbjct: 98 YARQDRRP-RSARVA-ISAKVVANMLEIAGVERIITMDLHADQIQGFFDIPVDNIYATPI 155
Query: 996 LL-----QYIQDSVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLFRN 1050
LL Q D +VV+ + V+ K D++I+ + R N + +
Sbjct: 156 LLGDLRKQNYPDLLVVSPDVGGVVRARALAKQLNCDLAII--DKRRPKANVAEVMNIIGE 213
Query: 1051 VDGR 1054
V+GR
Sbjct: 214 VEGR 217
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 849 ISVVGDVGGRVAIXXXXXXXXXHSFVAAAEVLKDRGAYKIYVLATHGLL 897
++++G+V GR + + AA+VLK+RGA +++ ATH +L
Sbjct: 208 MNIIGEVEGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVL 256
>pdb|1DKR|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKR|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1IBS|A Chain A, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
pdb|1IBS|B Chain B, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
Length = 317
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 573 KMRKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQDSI 632
K R R I +KL A ++ T+G +I +DLH +IQGFFD P+D+L P L +Y +
Sbjct: 106 KARSREPITAKLFANLLETAGATRVIALDLHAPQIQGFFDIPIDHLMGVPILGEYFEGK- 164
Query: 633 PDYKNAVIVAKNPGAAKKATSYAERLRLGIAVI 665
+ ++ VIV+ + G +A A+RL+ IA+I
Sbjct: 165 -NLEDIVIVSPDHGGVTRARKLADRLKAPIAII 196
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 1116 ISVVGDVGGRVAIXXXXXXXXXHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEES 1175
+++VG++ G+ AI + AA L + GA ++Y TH +LS A I S
Sbjct: 209 MNIVGNIEGKTAILIDDIIDTAGTITLAANALVENGAKEVYACCTHPVLSGPAVERINNS 268
Query: 1176 PIDEVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLF 1224
I E+VVTN+I +K + + K + + LL+EAI R+H ++S+SYLF
Sbjct: 269 TIKELVVTNSIKLPEEK-KIERFKQLSVGPLLAEAIIRVHEQQSVSYLF 316
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 1004 VVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLF 1048
+VVTN+I +K + + K + + LL+EAI R+H ++S+SYLF
Sbjct: 273 LVVTNSIKLPEEK-KIERFKQLSVGPLLAEAIIRVHEQQSVSYLF 316
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
Query: 976 AEEIQGFFDCPVDNLRASPFLLQY-----IQDSVVVT 1007
A +IQGFFD P+D+L P L +Y ++D V+V+
Sbjct: 137 APQIQGFFDIPIDHLMGVPILGEYFEGKNLEDIVIVS 173
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 849 ISVVGDVGGRVAIXXXXXXXXXHSFVAAAEVLKDRGAYKIYVLATHGLL 897
+++VG++ G+ AI + AA L + GA ++Y TH +L
Sbjct: 209 MNIVGNIEGKTAILIDDIIDTAGTITLAANALVENGAKEVYACCTHPVL 257
>pdb|2VZU|A Chain A, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
D469a With Pnp-Beta-D-Glucosamine
pdb|2VZU|B Chain B, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
D469a With Pnp-Beta-D-Glucosamine
Length = 1032
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 125/640 (19%), Positives = 227/640 (35%), Gaps = 108/640 (16%)
Query: 20 VGICDIYHIIIENESKQNLELG--EKSVELEGYHVARIRDILTDITYHEDLKSWHLSVRV 77
G+ + + N+ ++L +G + + ++ +RD+L + L+S H+ +
Sbjct: 179 TGVNSVAFKVYPNDPNRDLSMGWIDWAQTPPDQNMGIVRDVLVRRSGAVALRSAHVIQK- 237
Query: 78 ILEAGLSQA--VVKAKLTAELA----------VGKKPLRVDSLVNAEPSHGEIEVVSTLM 125
L + L A VKA + + A V KP+ + A+ E + V+ +
Sbjct: 238 -LNSALDHADLTVKADVRNDSANAVQTTVAGTVAGKPISQTVSLAAK----ERKTVTFPL 292
Query: 126 VLASEVELWWPNGYGEQPLYNLQITLA-SGVEMSTKSIKIGFRTVELIQDHVDPNHLEKG 184
V +WWP G G Q Y+L +T + G K G R V+ + G
Sbjct: 293 VGLDRPNVWWPAGMGGQHRYDLDLTASVGGTPSDAAKSKFGVRDVKATLNS------SGG 346
Query: 185 RYFYFEVNKVPIYSKGSNLIPVDVLPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMS 244
R + VN P+ +G P L NE+ D L +N +R+ G
Sbjct: 347 R--QYSVNGKPLLIRGGGYTPDLFLRW---NETAAADKLKYVLNLGLNTVRL--EGHIEP 399
Query: 245 DYFYETCDELGILI---WQDMMFACNNY-----------PATPTFLQSVRSEISQTVRRV 290
D F++ D+LG+L W+ C+ + P + ++ + R+
Sbjct: 400 DEFFDIADDLGVLTMPGWE----CCDKWEGQVNGEEKGEPWVESDYPIAKASMFSEAERL 455
Query: 291 QHHPCI------AVWAGNNEMEAHNYDYYQNLWDPSTAPKSRFCSEFGIQSLPQLSTFQK 344
+ HP + + +A + +E D + ++F + +P S
Sbjct: 456 RDHPSVISFHIGSAFAPDRRIEQGYLDAMK-------------AADFLLPVIPAASARPS 502
Query: 345 VATEADLASWRTPF--------FDSRQHLAGGTGILESSVGHQFEIGNL-TLEYFAYLSQ 395
T A P+ +D Q GG S +I + TL+ S+
Sbjct: 503 PITGASGMKMNGPYDYVPPVYWYDKSQKDRGGAWSFNSETSAGVDIPTMDTLKRMMSASE 562
Query: 396 C-----MAAIHALHGRYATDQAGAIKTITEQMRRDKGVLREDGSGHNMGALYWQLNDIYQ 450
+ H R ++D G +K + + + G LND +
Sbjct: 563 LDTMWKNPSAKQYH-RSSSDTFGNLKLFGDALTKRYGASA-------------NLNDFVR 608
Query: 451 AGAIKTITEQMRRDKGVLRE--DGSGHNMGALYWQLNDVWQAPTWSSIDYDGNWKMLHYF 508
+ + R D + + G +YW LN W + W D + +Y
Sbjct: 609 KAQLSQYENVRAEFESHSRNYTDSTNPSTGLIYWMLNSPWTSLHWQLFDAYMDQNGAYYG 668
Query: 509 ARKFFAPVLISPVLNVSSRTLEVVLLNDPNRPLHNVTIVTESYAWNDTRPFRSVKTPLVT 568
A+K P+ I S VV++N + + +T T+ Y + T + + KT L
Sbjct: 669 AKKANEPLHI----QYSHDNRSVVVINQTSNAVSGLTATTKLYNLDGTEKYSNTKTGLSV 724
Query: 569 VVSGKMRKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQ 608
G + + V+ + T+ L + D KE+
Sbjct: 725 ---GALGAKATAVTVPAVSGLSTTYLAKNVLTDSSGKEVS 761
>pdb|2VZO|A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2VZO|B Chain B, Crystal Structure Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
Length = 1032
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 127/634 (20%), Positives = 226/634 (35%), Gaps = 96/634 (15%)
Query: 20 VGICDIYHIIIENESKQNLELG--EKSVELEGYHVARIRDILTDITYHEDLKSWHLSVRV 77
G+ + + N+ ++L +G + + ++ +RD+L + L+S H+ +
Sbjct: 179 TGVNSVAFKVYPNDPNRDLSMGWIDWAQTPPDQNMGIVRDVLVRRSGAVALRSAHVIQK- 237
Query: 78 ILEAGLSQA--VVKA----------KLTAELAVGKKPLRVDSLVNAEPSHGEIEVVSTLM 125
L + L A VKA + T V KP+ + A+ E + V+ +
Sbjct: 238 -LNSALDHADLTVKADVRNDSANAVQTTVAGTVAGKPISQTVSLAAK----ERKTVTFPL 292
Query: 126 VLASEVELWWPNGYGEQPLYNLQITLA-SGVEMSTKSIKIGFRTVELIQDHVDPNHLEKG 184
V +WWP G G Q Y+L +T + G K G R V+ + G
Sbjct: 293 VGLDRPNVWWPAGMGGQHRYDLDLTASVGGTPSDAAKSKFGVRDVKATLNS------SGG 346
Query: 185 RYFYFEVNKVPIYSKGSNLIPVDVLPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMS 244
R + VN P+ +G P L NE+ D L +N +R+ G
Sbjct: 347 R--QYSVNGKPLLIRGGGYTPDLFLRW---NETAAADKLKYVLNLGLNTVRL--EGHIEP 399
Query: 245 DYFYETCDELGILI---WQDMMFACNNY-----------PATPTFLQSVRSEISQTVRRV 290
D F++ D+LG+L W+ C+ + P + ++ + R+
Sbjct: 400 DEFFDIADDLGVLTMPGWE----CCDKWEGQVNGEEKGEPWVESDYPIAKASMFSEAERL 455
Query: 291 QHHPCIAVWAGNNEMEAHNYDYYQNLWDPSTAPKSRFCSEFGIQSLPQLSTFQKVATEAD 350
+ HP + + +E A + Q D A ++F + +P S T A
Sbjct: 456 RDHPSVISFHIGSEF-APDRRIEQGYLDAMKA------ADFLLPVIPAASARPSPITGAS 508
Query: 351 LASWRTPF--------FDSRQHLAGGTGILESSVGHQFEIGNL-TLEYFAYLSQC----- 396
P+ +D Q GG S +I + TL+ S+
Sbjct: 509 GMKMNGPYDYVPPVYWYDKSQKDRGGAWSFNSETSAGVDIPTMDTLKRMMSASELDTMWK 568
Query: 397 MAAIHALHGRYATDQAGAIKTITEQMRRDKGVLREDGSGHNMGALYWQLNDIYQAGAIKT 456
+ H R ++D G +K + + + G LND + +
Sbjct: 569 NPSAKQYH-RSSSDTFGNLKLFGDALTKRYGASA-------------NLNDFVRKAQLSQ 614
Query: 457 ITEQMRRDKGVLRE--DGSGHNMGALYWQLNDVWQAPTWSSIDYDGNWKMLHYFARKFFA 514
+ R D + + G +YW LN W + W D + +Y A+K
Sbjct: 615 YENVRAEFESHSRNYTDSTNPSTGLIYWMLNSPWTSLHWQLFDAYMDQNGAYYGAKKANE 674
Query: 515 PVLISPVLNVSSRTLEVVLLNDPNRPLHNVTIVTESYAWNDTRPFRSVKTPLVTVVSGKM 574
P+ I S VV++N + + +T T+ Y + T + + KT L G +
Sbjct: 675 PLHI----QYSHDNRSVVVINQTSNAVSGLTATTKLYNLDGTEKYSNTKTGLSV---GAL 727
Query: 575 RKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQ 608
+ V+ + T+ L + D KE+
Sbjct: 728 GAKATAVTVPAVSGLSTTYLAKNVLTDSSGKEVS 761
>pdb|2VZT|A Chain A, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
E541a With Pnp-Beta-D-Glucosamine
pdb|2VZT|B Chain B, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
E541a With Pnp-Beta-D-Glucosamine
pdb|2VZV|A Chain A, Substrate Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa E541a With Chitosan
pdb|2VZV|B Chain B, Substrate Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa E541a With Chitosan
Length = 1032
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 126/634 (19%), Positives = 228/634 (35%), Gaps = 96/634 (15%)
Query: 20 VGICDIYHIIIENESKQNLELG--EKSVELEGYHVARIRDILTDITYHEDLKSWHLSVRV 77
G+ + + N+ ++L +G + + ++ +RD+L + L+S H+ +
Sbjct: 179 TGVNSVAFKVYPNDPNRDLSMGWIDWAQTPPDQNMGIVRDVLVRRSGAVALRSAHVIQK- 237
Query: 78 ILEAGLSQA--VVKAKLTAELA----------VGKKPLRVDSLVNAEPSHGEIEVVSTLM 125
L + L A VKA + + A V KP+ + A+ E + V+ +
Sbjct: 238 -LNSALDHADLTVKADVRNDSANAVQTTVAGTVAGKPISQTVSLAAK----ERKTVTFPL 292
Query: 126 VLASEVELWWPNGYGEQPLYNLQITLA-SGVEMSTKSIKIGFRTVELIQDHVDPNHLEKG 184
V +WWP G G Q Y+L +T + G K G R V+ + G
Sbjct: 293 VGLDRPNVWWPAGMGGQHRYDLDLTASVGGTPSDAAKSKFGVRDVKATLNS------SGG 346
Query: 185 RYFYFEVNKVPIYSKGSNLIPVDVLPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMS 244
R + VN P+ +G P L NE+ D L +N +R+ G
Sbjct: 347 R--QYSVNGKPLLIRGGGYTPDLFLRW---NETAAADKLKYVLNLGLNTVRL--EGHIEP 399
Query: 245 DYFYETCDELGILI---WQDMMFACNNY-----------PATPTFLQSVRSEISQTVRRV 290
D F++ D+LG+L W+ C+ + P + ++ + R+
Sbjct: 400 DEFFDIADDLGVLTMPGWE----CCDKWEGQVNGEEKGEPWVESDYPIAKASMFSEAERL 455
Query: 291 QHHPCIAVWAGNNEMEAHNYDYYQNLWDPSTAPKSRFCSEFGIQSLPQLSTFQKVATEAD 350
+ HP + + ++ A + Q D A ++F + +P S T A
Sbjct: 456 RDHPSVISFHIGSDF-APDRRIEQGYLDAMKA------ADFLLPVIPAASARPSPITGAS 508
Query: 351 LASWRTPF--------FDSRQHLAGGTGILESSVGHQFEIGNL-TLEYFAYLSQC----- 396
P+ +D Q GG S+ +I + TL+ S+
Sbjct: 509 GMKMNGPYDYVPPVYWYDKSQKDRGGAWSFNSATSAGVDIPTMDTLKRMMSASELDTMWK 568
Query: 397 MAAIHALHGRYATDQAGAIKTITEQMRRDKGVLREDGSGHNMGALYWQLNDIYQAGAIKT 456
+ H R ++D G +K + + + G LND + +
Sbjct: 569 NPSAKQYH-RSSSDTFGNLKLFGDALTKRYGASA-------------NLNDFVRKAQLSQ 614
Query: 457 ITEQMRRDKGVLRE--DGSGHNMGALYWQLNDVWQAPTWSSIDYDGNWKMLHYFARKFFA 514
+ R D + + G +YW LN W + W D + +Y A+K
Sbjct: 615 YENVRAEFESHSRNYTDSTNPSTGLIYWMLNSPWTSLHWQLFDAYMDQNGAYYGAKKANE 674
Query: 515 PVLISPVLNVSSRTLEVVLLNDPNRPLHNVTIVTESYAWNDTRPFRSVKTPLVTVVSGKM 574
P+ I S VV++N + + +T T+ Y + T + + KT L G +
Sbjct: 675 PLHI----QYSHDNRSVVVINQTSNAVSGLTATTKLYNLDGTEKYSNTKTGLSV---GAL 727
Query: 575 RKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQ 608
+ V+ + T+ L + D KE+
Sbjct: 728 GAKATAVTVPAVSGLSTTYLAKNVLTDSSGKEVS 761
>pdb|1BHG|A Chain A, Human Beta-Glucuronidase At 2.6 A Resolution
pdb|1BHG|B Chain B, Human Beta-Glucuronidase At 2.6 A Resolution
pdb|3HN3|A Chain A, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|B Chain B, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|D Chain D, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|E Chain E, Human Beta-glucuronidase At 1.7 A Resolution
Length = 613
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 111/275 (40%), Gaps = 68/275 (24%)
Query: 60 TDITYHEDLKSWHLSVRVILEAGLSQAVVKAKLTAELAVGKKPLRVDSLV--NAEPSHGE 117
T TY +D+ ++ V ++GL + K + + + L ++ V N + G+
Sbjct: 203 TPTTYIDDIT---VTTSVEQDSGLVNYQISVKGSNLFKLEVRLLDAENKVVANGTGTQGQ 259
Query: 118 IEVVSTLMVLASEVELWWPNGYGEQP--LYNLQITLASGVEMSTKS----IKIGFRTVEL 171
++V V LWWP E+P LY+L++ L + + S + +G RTV +
Sbjct: 260 LKVPG--------VSLWWPYLMHERPAYLYSLEVQLTAQTSLGPVSDFYTLPVGIRTVAV 311
Query: 172 IQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNESTIRD------LLVS 225
+ F +N P Y G N + ++ IR LLV
Sbjct: 312 TKSQ-------------FLINGKPFYFHGVN----------KHEDADIRGKGFDWPLLVK 348
Query: 226 TKEANMNMLRVWGGGVYMSDYF------YETCDELGILIWQDMMFACNNYP-ATPTFLQS 278
+ N+LR G + + ++ + CD GI++ + C A P F +
Sbjct: 349 ----DFNLLRWLGANAFRTSHYPYAEEVMQMCDRYGIVVIDE----CPGVGLALPQFFNN 400
Query: 279 VRSE-----ISQTVRRVQHHPCIAVWAGNNEMEAH 308
V + + VRR ++HP + +W+ NE +H
Sbjct: 401 VSLHHHMQVMEEVVRRDKNHPAVVMWSVANEPASH 435
>pdb|3FN9|A Chain A, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
pdb|3FN9|B Chain B, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
pdb|3FN9|C Chain C, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
pdb|3FN9|D Chain D, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
Length = 692
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 244 SDYFYETCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNN 303
SDY Y CD LG++IW ++ C N T ++ +S++ + +R+ +HP I VW +N
Sbjct: 343 SDYLYSRCDTLGLIIWAEI--PCVN-RVTGYETENAQSQLRELIRQSFNHPSIYVWGLHN 399
Query: 304 EM-EAHNY 310
E+ + H Y
Sbjct: 400 EVYQPHEY 407
>pdb|3BGA|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacteroides
Thetaiotaomicron Vpi-5482
pdb|3BGA|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacteroides
Thetaiotaomicron Vpi-5482
Length = 1010
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 30/186 (16%)
Query: 129 SEVELWWPNGYGEQP-LYNLQITL--ASGVEMSTKSIKIGFRTVELIQDHVDPNHLEKGR 185
+EV+ W E P LY L + L A G ++GFRT E+ + GR
Sbjct: 299 AEVKAW----NAEHPNLYTLVLELKDAQGKVTELTGCEVGFRTSEI----------KDGR 344
Query: 186 YFYFEVNKVPIYSKGSNLIPVDVLPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMSD 245
F +N VP+ KG+N L + E +D+ + K+ N+N +R
Sbjct: 345 ---FCINGVPVLVKGTNRHEHSQLGRTVSKELXEQDIRLX-KQHNINXVR--NSHYPTHP 398
Query: 246 YFYETCDELGILIWQDMMFACNNYPATP-------TFLQSVRSEISQTVRRVQHHPCIAV 298
Y+Y+ CD G+ + + P T+L + + R ++HP I +
Sbjct: 399 YWYQLCDRYGLYXIDEANIESHGXGYGPASLAKDSTWLTAHXDRTHRXYERSKNHPAIVI 458
Query: 299 WAGNNE 304
W+ NE
Sbjct: 459 WSQGNE 464
>pdb|3DEC|A Chain A, Crystal Structure Of A Glycosyl Hydrolases Family 2
Protein From Bacteroides Thetaiotaomicron
Length = 1000
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 26/174 (14%)
Query: 141 EQP-LYNLQITL--ASGVEMSTKSIKIGFRTVELIQDHVDPNHLEKGRYFYFEVNKVPIY 197
E P LY L + L A G K+GFRT E+ + GR F +N VP+
Sbjct: 303 EHPELYTLLLELKDAGGKVTEITGTKVGFRTSEI----------KNGR---FCINGVPVL 349
Query: 198 SKGSNLIPVDVLPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMSDYFYETCDELGIL 257
KG N L + E +D+ + K+ N+N +R Y+Y+ CD G+
Sbjct: 350 VKGVNRHEHSQLGRTVSKELXEQDIRLX-KQHNINTVR--NSHYPAHPYWYQLCDRYGLY 406
Query: 258 IWQDMMFACNNYPATPTFLQS----VRSEISQTVR---RVQHHPCIAVWAGNNE 304
+ + + P L + + I +T R R ++HP + +W+ NE
Sbjct: 407 VIDEANIESHGXGYGPASLAKDSTWLPAHIDRTRRXYERSKNHPSVVIWSLGNE 460
>pdb|2VZS|A Chain A, Chitosan Product Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2VZS|B Chain B, Chitosan Product Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2X05|A Chain A, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X05|B Chain B, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X09|A Chain A, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X09|B Chain B, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
Length = 1032
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 102/253 (40%), Gaps = 34/253 (13%)
Query: 20 VGICDIYHIIIENESKQNLELG--EKSVELEGYHVARIRDILTDITYHEDLKSWHLSVRV 77
G+ + + N+ ++L +G + + ++ +RD+L + L+S H+ +
Sbjct: 179 TGVNSVAFKVYPNDPNRDLSMGWIDWAQTPPDQNMGIVRDVLVRRSGAVALRSAHVIQK- 237
Query: 78 ILEAGLSQA--VVKAKLTAELA----------VGKKPLRVDSLVNAEPSHGEIEVVSTLM 125
L + L A VKA + + A V KP+ + A+ E + V+ +
Sbjct: 238 -LNSALDHADLTVKADVRNDSANAVQTTVAGTVAGKPISQTVSLAAK----ERKTVTFPL 292
Query: 126 VLASEVELWWPNGYGEQPLYNLQITLA-SGVEMSTKSIKIGFRTVELIQDHVDPNHLEKG 184
V +WWP G G Q Y+L +T + G K G R V+ + G
Sbjct: 293 VGLDRPNVWWPAGMGGQHRYDLDLTASVGGTPSDAAKSKFGVRDVKATLNS------SGG 346
Query: 185 RYFYFEVNKVPIYSKGSNLIPVDVLPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMS 244
R + VN P+ +G P L NE+ D L +N +R+ G
Sbjct: 347 R--QYSVNGKPLLIRGGGYTPDLFLRW---NETAAADKLKYVLNLGLNTVRL--EGHIEP 399
Query: 245 DYFYETCDELGIL 257
D F++ D+LG+L
Sbjct: 400 DEFFDIADDLGVL 412
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 7/138 (5%)
Query: 471 DGSGHNMGALYWQLNDVWQAPTWSSIDYDGNWKMLHYFARKFFAPVLISPVLNVSSRTLE 530
D + + G +YW LN W + W D + +Y A+K P+ I S
Sbjct: 631 DSTNPSTGLIYWMLNSPWTSLHWQLFDAYMDQNGAYYGAKKANEPLHI----QYSHDNRS 686
Query: 531 VVLLNDPNRPLHNVTIVTESYAWNDTRPFRSVKTPLVTVVSGKMRKRGCIVSKLLAKMMC 590
VV++N + + +T T+ Y + T + + KT L G + + V+ +
Sbjct: 687 VVVINQTSNAVSGLTATTKLYNLDGTEKYSNTKTGLSV---GALGAKATAVTVPAVSGLS 743
Query: 591 TSGLKHIITMDLHQKEIQ 608
T+ L + D KE+
Sbjct: 744 TTYLAKNVLTDSSGKEVS 761
>pdb|1YQ2|A Chain A, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|B Chain B, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|C Chain C, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|D Chain D, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|E Chain E, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|F Chain F, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
Length = 1024
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 44/178 (24%)
Query: 144 LYNLQITLASGVEMSTKSIKIGFRTVELIQDHVDPNHLEKGRYFYFE-VNKVPIYSKGSN 202
LY ++ A+ + S+++GFRTV ++ D L GR F VN+ +
Sbjct: 293 LYEASVSSAA----ESISVRLGFRTVRIVGDQF----LVNGRRVVFHGVNRHETH----- 339
Query: 203 LIPVDVLPERSN--NESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELG 255
P+R +E+ R+ L K N+N +R S Y + DE+G
Sbjct: 340 -------PDRGRVFDEAGAREDLALMKRFNVNAIRT-------SHYPPHPRLLDLADEMG 385
Query: 256 ILIWQDMMFACNNYPA---------TPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNE 304
+ + + + A P + ++ + +TV R ++HP I +W+ NE
Sbjct: 386 FWVILECDLETHGFEAGGWVENPSDVPAWRDALVDRMERTVERDKNHPSIVMWSLGNE 443
>pdb|3CMG|A Chain A, Crystal Structure Of Putative Beta-Galactosidase From
Bacteroides Fragilis
Length = 667
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 89/200 (44%), Gaps = 33/200 (16%)
Query: 119 EVVSTLMVLASEVELWWPNGYGEQPLYNLQITL-ASGVEMSTKSIKIGFRTVELIQDHVD 177
+++ L +L + LW NG + +Y + I+L G ++ + + +G R H D
Sbjct: 219 DILEQLPLLIQKPRLW--NGCEDPFMYQVSISLHKDGKQIDSVTQPLGLRYY-----HTD 271
Query: 178 PNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNESTIR-----DLLVSTKEANMN 232
P +KG F+ +P++ V +R+ + +R + + +E +N
Sbjct: 272 P---DKG--FFLNGKHLPLHG-------VCRHQDRAEVGNALRPQHHEEDVALMREMGVN 319
Query: 233 MLRVWGGGVYMSDYFYETCDELGILIWQDMMF------ACNNYPATPTFLQSVRSEISQT 286
+R+ + Y Y+ D+ GI+ W ++ F A + +F ++ + ++ +
Sbjct: 320 AIRL--AHYPQATYMYDLMDKHGIVTWAEIPFVGPGGYADKGFVDQASFRENGKQQLIEL 377
Query: 287 VRRVQHHPCIAVWAGNNEME 306
+R+ +HP I W NE++
Sbjct: 378 IRQHYNHPSICFWGLFNELK 397
>pdb|1F49|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|B Chain B, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|C Chain C, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|D Chain D, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|E Chain E, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|F Chain F, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|G Chain G, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|H Chain H, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|I Chain I, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|J Chain J, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|K Chain K, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|L Chain L, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|M Chain M, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|N Chain N, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|O Chain O, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|P Chain P, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1JZ1|I Chain I, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|J Chain J, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|K Chain K, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|L Chain L, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|M Chain M, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|N Chain N, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|O Chain O, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|P Chain P, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ0|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|E Chain E, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|F Chain F, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|G Chain G, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|H Chain H, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JYZ|I Chain I, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|J Chain J, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|K Chain K, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|L Chain L, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|M Chain M, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|N Chain N, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|O Chain O, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|P Chain P, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYY|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|E Chain E, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|F Chain F, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|G Chain G, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|H Chain H, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400
Length = 1023
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Query: 214 NNESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------ 262
+ ++ ++D+L+ K+ N N +R S Y +Y CD G+ + +
Sbjct: 368 DEQTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHG 419
Query: 263 MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEAHNYD 311
M N P +L ++ +++ V+R ++HP + +W+ GN N+D
Sbjct: 420 MVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHD 469
>pdb|1JZ7|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
Length = 1023
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Query: 214 NNESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------ 262
+ ++ ++D+L+ K+ N N +R S Y +Y CD G+ + +
Sbjct: 368 DEQTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHG 419
Query: 263 MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEAHNYD 311
M N P +L ++ +++ V+R ++HP + +W+ GN N+D
Sbjct: 420 MVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHD 469
>pdb|3MUY|1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|2 Chain 2, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|3 Chain 3, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|4 Chain 4, E. Coli (Lacz) Beta-Galactosidase (R599a)
Length = 1023
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Query: 214 NNESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------ 262
+ ++ ++D+L+ K+ N N +R S Y +Y CD G+ + +
Sbjct: 368 DEQTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHG 419
Query: 263 MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEAHNYD 311
M N P +L ++ +++ V+R ++HP + +W+ GN N+D
Sbjct: 420 MVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHD 469
>pdb|1DP0|A Chain A, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|B Chain B, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|C Chain C, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|D Chain D, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1JZ6|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ5|A Chain A, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|B Chain B, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|C Chain C, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|D Chain D, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ4|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ3|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JYX|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1HN1|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|B Chain B, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|C Chain C, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|D Chain D, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
Length = 1023
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Query: 214 NNESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------ 262
+ ++ ++D+L+ K+ N N +R S Y +Y CD G+ + +
Sbjct: 368 DEQTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHG 419
Query: 263 MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEAHNYD 311
M N P +L ++ +++ V+R ++HP + +W+ GN N+D
Sbjct: 420 MVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHD 469
>pdb|3IAQ|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E416v)
Length = 1023
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Query: 214 NNESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------ 262
+ ++ ++D+L+ K+ N N +R S Y +Y CD G+ + +
Sbjct: 368 DEQTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIVTHG 419
Query: 263 MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEAHNYD 311
M N P +L ++ +++ V+R ++HP + +W+ GN N+D
Sbjct: 420 MVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHD 469
>pdb|3DYM|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3E1F|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
Length = 1023
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Query: 214 NNESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------ 262
+ ++ ++D+L+ K+ N N +R S Y +Y CD G+ + +
Sbjct: 368 DEQTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETEG 419
Query: 263 MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEAHNYD 311
M N P +L ++ +++ V+R ++HP + +W+ GN N+D
Sbjct: 420 MVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHD 469
>pdb|1JZ8|A Chain A, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|B Chain B, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|C Chain C, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|D Chain D, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JYW|A Chain A, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|B Chain B, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|C Chain C, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|D Chain D, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYV|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYN|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
Length = 1023
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Query: 214 NNESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------ 262
+ ++ ++D+L+ K+ N N +R S Y +Y CD G+ + +
Sbjct: 368 DEQTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHG 419
Query: 263 MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEAHNYD 311
M N P +L ++ +++ V+R ++HP + +W+ GN N+D
Sbjct: 420 MVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHD 469
>pdb|3I3B|A Chain A, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|B Chain B, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|C Chain C, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|D Chain D, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3D|A Chain A, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|B Chain B, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|C Chain C, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|D Chain D, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3E|A Chain A, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|B Chain B, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|C Chain C, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|D Chain D, E. Coli (Lacz) Beta-Galactosidase (M542a)
Length = 1023
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Query: 214 NNESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------ 262
+ ++ ++D+L+ K+ N N +R S Y +Y CD G+ + +
Sbjct: 368 DEQTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHG 419
Query: 263 MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEAHNYD 311
M N P +L ++ +++ V+R ++HP + +W+ GN N+D
Sbjct: 420 MVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHD 469
>pdb|3IAP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E416q)
Length = 1023
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Query: 214 NNESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------ 262
+ ++ ++D+L+ K+ N N +R S Y +Y CD G+ + +
Sbjct: 368 DEQTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIQTHG 419
Query: 263 MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEAHNYD 311
M N P +L ++ +++ V+R ++HP + +W+ GN N+D
Sbjct: 420 MVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHD 469
>pdb|1PX3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|B Chain B, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|C Chain C, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|D Chain D, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX4|A Chain A, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|B Chain B, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|C Chain C, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|D Chain D, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
Length = 1023
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Query: 214 NNESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------ 262
+ ++ ++D+L+ K+ N N +R S Y +Y CD G+ + +
Sbjct: 368 DEQTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHG 419
Query: 263 MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEAHNYD 311
M N P +L ++ +++ V+R ++HP + +W+ GN N+D
Sbjct: 420 MVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHD 469
>pdb|3T2O|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2P|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2Q|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
Length = 1052
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Query: 214 NNESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------ 262
+ ++ ++D+L+ K+ N N +R S Y +Y CD G+ + +
Sbjct: 397 DEQTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHG 448
Query: 263 MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEAHNYD 311
M N P +L ++ +++ V+R ++HP + +W+ GN N+D
Sbjct: 449 MVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHD 498
>pdb|3T0A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0B|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0D|A Chain A, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|B Chain B, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|C Chain C, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|D Chain D, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
Length = 1052
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Query: 214 NNESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------ 262
+ ++ ++D+L+ K+ N N +R S Y +Y CD G+ + +
Sbjct: 397 DEQTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHG 448
Query: 263 MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEAHNYD 311
M N P +L ++ +++ V+R ++HP + +W+ GN N+D
Sbjct: 449 MVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHD 498
>pdb|3SEP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3T08|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T09|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
Length = 1052
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Query: 214 NNESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------ 262
+ ++ ++D+L+ K+ N N +R S Y +Y CD G+ + +
Sbjct: 397 DEQTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHG 448
Query: 263 MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEAHNYD 311
M N P +L ++ +++ V+R ++HP + +W+ GN N+D
Sbjct: 449 MVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHD 498
>pdb|3DYO|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418n)
Length = 1023
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Query: 214 NNESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------ 262
+ ++ ++D+L+ K+ N N +R S Y +Y CD G+ + +
Sbjct: 368 DEQTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETNG 419
Query: 263 MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEAHNYD 311
M N P +L ++ +++ V+R ++HP + +W+ GN N+D
Sbjct: 420 MVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHD 469
>pdb|3MUZ|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MV0|1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|2 Chain 2, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|3 Chain 3, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|4 Chain 4, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV1|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
Length = 1052
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Query: 214 NNESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------ 262
+ ++ ++D+L+ K+ N N +R S Y +Y CD G+ + +
Sbjct: 397 DEQTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHG 448
Query: 263 MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEAHNYD 311
M N P +L ++ +++ V+R ++HP + +W+ GN N+D
Sbjct: 449 MVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHD 498
>pdb|1BGM|I Chain I, Beta-Galactosidase (Chains I-P)
pdb|1BGM|J Chain J, Beta-Galactosidase (Chains I-P)
pdb|1BGM|K Chain K, Beta-Galactosidase (Chains I-P)
pdb|1BGM|L Chain L, Beta-Galactosidase (Chains I-P)
pdb|1BGM|M Chain M, Beta-Galactosidase (Chains I-P)
pdb|1BGM|N Chain N, Beta-Galactosidase (Chains I-P)
pdb|1BGM|O Chain O, Beta-Galactosidase (Chains I-P)
pdb|1BGM|P Chain P, Beta-Galactosidase (Chains I-P)
pdb|1BGL|A Chain A, Beta-Galactosidase (Chains A-H)
pdb|1BGL|B Chain B, Beta-Galactosidase (Chains A-H)
pdb|1BGL|C Chain C, Beta-Galactosidase (Chains A-H)
pdb|1BGL|D Chain D, Beta-Galactosidase (Chains A-H)
pdb|1BGL|E Chain E, Beta-Galactosidase (Chains A-H)
pdb|1BGL|F Chain F, Beta-Galactosidase (Chains A-H)
pdb|1BGL|G Chain G, Beta-Galactosidase (Chains A-H)
pdb|1BGL|H Chain H, Beta-Galactosidase (Chains A-H)
pdb|1JZ2|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
Length = 1023
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Query: 214 NNESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------ 262
+ ++ ++D+L+ K+ N N +R S Y +Y CD G+ + +
Sbjct: 368 DEQTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHG 419
Query: 263 MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEAHNYD 311
M N P +L ++ +++ V+R ++HP + +W+ GN N+D
Sbjct: 420 MVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHD 469
>pdb|1F4A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|B Chain B, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|C Chain C, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|D Chain D, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4H|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|B Chain B, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|C Chain C, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|D Chain D, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
Length = 1021
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Query: 214 NNESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------ 262
+ ++ ++D+L+ K+ N N +R S Y +Y CD G+ + +
Sbjct: 366 DEQTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHG 417
Query: 263 MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEAHNYD 311
M N P +L ++ +++ V+R ++HP + +W+ GN N+D
Sbjct: 418 MVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHD 467
>pdb|3GM8|A Chain A, Crystal Structure Of A Beta-glycosidase From Bacteroides
Vulgatus
Length = 801
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 243 MSDYFYETCDELGILIWQDMMFACNNYPATPT----FLQSVRSEISQTVRRVQHHPCIAV 298
S FY CD +GI++ + + N A F + + +++ ++R ++HP I +
Sbjct: 331 FSPAFYNLCDTMGIMVLNEGLDGWNQPKAADDYGNYFDEWWQKDMTDFIKRDRNHPSIIM 390
Query: 299 WAGNNEMEAHNYDYYQNL 316
W+ NE+ + NL
Sbjct: 391 WSIGNEVTGATPEIQHNL 408
>pdb|3MBI|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate (Prpp)
Synthetase From Thermoplasma Volcanium In Complex With
Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate (Prpp)
Synthetase From Thermoplasma Volcanium In Complex With
Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|C Chain C, Crystal Structure Of The Phosphoribosylpyrophosphate (Prpp)
Synthetase From Thermoplasma Volcanium In Complex With
Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|D Chain D, Crystal Structure Of The Phosphoribosylpyrophosphate (Prpp)
Synthetase From Thermoplasma Volcanium In Complex With
Adp-Mg2+ And Ribose 5- Phosphate
Length = 287
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 1121 DVGGRVAIXXXXXXXXXHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 1180
DV G+ + + ++ +L+++GA KIYV A HGL + + I ++ DE+
Sbjct: 202 DVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLFVNGSENKILQNA-DEI 260
Query: 1181 VVTNTIP---HDVQKLQ--CPKIKTVD 1202
VT+T+ D+ Q C I+ +D
Sbjct: 261 HVTDTVESKFSDISVYQEVCNYIRDID 287
>pdb|3LPN|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate (Prpp)
Synthetase From Thermoplasma Volcanium In Complex With An
Atp Analog (Ampcpp).
pdb|3LPN|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate (Prpp)
Synthetase From Thermoplasma Volcanium In Complex With An
Atp Analog (Ampcpp).
pdb|3LRT|A Chain A, Crystal Structure Of The Phosphoribosyl Pyrophosphate (Prpp)
Synthetase From Thermoplasma Volcanium In Complex With
Adp.
pdb|3LRT|B Chain B, Crystal Structure Of The Phosphoribosyl Pyrophosphate (Prpp)
Synthetase From Thermoplasma Volcanium In Complex With
Adp.
pdb|3NAG|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate (Prpp)
Synthetase From Thermoplasma Volcanium In Complex With
Adp
pdb|3NAG|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate (Prpp)
Synthetase From Thermoplasma Volcanium In Complex With
Adp
Length = 286
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 1121 DVGGRVAIXXXXXXXXXHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 1180
DV G+ + + ++ +L+++GA KIYV A HGL + + I ++ DE+
Sbjct: 200 DVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLFVNGSENKILQNA-DEI 258
Query: 1181 VVTNTIP---HDVQKLQ--CPKIKTVD 1202
VT+T+ D+ Q C I+ +D
Sbjct: 259 HVTDTVESKFSDISVYQEVCNYIRDID 285
>pdb|3VD3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD4|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
Length = 1052
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Query: 214 NNESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------ 262
+ ++ ++D+L+ K+ N N +R S Y +Y CD G+ + +
Sbjct: 397 DEQTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHG 448
Query: 263 MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEAHNYD 311
M N P +L ++ +++ V+R ++HP + +W+ G+ N+D
Sbjct: 449 MVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGDESGHGANHD 498
>pdb|3VD5|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD7|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD9|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
Length = 1052
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Query: 214 NNESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------ 262
+ ++ ++D+L+ K+ N N +R S Y +Y CD G+ + +
Sbjct: 397 DEQTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHG 448
Query: 263 MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEAHNYD 311
M N P +L ++ +++ V+R ++HP + +W+ G+ N+D
Sbjct: 449 MVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGSESGHGANHD 498
>pdb|3VDA|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDB|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDC|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
Length = 1052
Score = 33.5 bits (75), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 20/110 (18%)
Query: 214 NNESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------ 262
+ ++ ++D+L+ K+ N N +R S Y +Y CD G+ + +
Sbjct: 397 DEQTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHG 448
Query: 263 MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEAHNYD 311
M N P +L ++ +++ V+R ++HP + +W+ G N+D
Sbjct: 449 MVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGTESGHGANHD 498
>pdb|3CZJ|A Chain A, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|B Chain B, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|C Chain C, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|D Chain D, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
Length = 1023
Score = 33.5 bits (75), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 20/110 (18%)
Query: 214 NNESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------ 262
+ ++ ++D+L+ K+ N N +R S Y +Y CD G+ + +
Sbjct: 368 DEQTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHG 419
Query: 263 MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEAHNYD 311
M N P +L ++ +++ V+R ++HP + +W+ G N+D
Sbjct: 420 MVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGTESGHGANHD 469
>pdb|3OB8|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OBA|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
Length = 1032
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 77/203 (37%), Gaps = 59/203 (29%)
Query: 140 GEQP-LYNLQITLASGVEMSTKSIK--IGFRTVELIQDHVDPNHLEKGRYFYFE-VNKVP 195
E P LY Q+ L +SIK +GFR VEL ++ N G+ F VN+
Sbjct: 308 AENPTLYKYQLDLIGSDGSVIQSIKHHVGFRQVELKDGNITVN----GKDILFRGVNRHD 363
Query: 196 IYSKGSNLIPVDVLPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYET 250
+ + +P+D + +RDL++ K+ N+N +R S Y Y+
Sbjct: 364 HHPRFGRAVPLDFV---------VRDLIL-MKKFNINAVR-------NSHYPNHPKVYDL 406
Query: 251 CDELGILIWQDMMFACNN--------------YPATPTFLQSVRSEI------------- 283
D+LG + + + YP T L V +
Sbjct: 407 FDKLGFWVIDEADLETHGVQEPFNRHTNLEAEYPDTKNKLYDVNAHYLSDNPEYEVAYLD 466
Query: 284 --SQTVRRVQHHPCIAVWAGNNE 304
SQ V R +HP I +W+ NE
Sbjct: 467 RASQLVLRDVNHPSIIIWSLGNE 489
>pdb|3CEA|A Chain A, Crystal Structure Of Myo-Inositol 2-Dehydrogenase
(Np_786804.1) From Lactobacillus Plantarum At 2.40 A
Resolution
pdb|3CEA|B Chain B, Crystal Structure Of Myo-Inositol 2-Dehydrogenase
(Np_786804.1) From Lactobacillus Plantarum At 2.40 A
Resolution
pdb|3CEA|C Chain C, Crystal Structure Of Myo-Inositol 2-Dehydrogenase
(Np_786804.1) From Lactobacillus Plantarum At 2.40 A
Resolution
pdb|3CEA|D Chain D, Crystal Structure Of Myo-Inositol 2-Dehydrogenase
(Np_786804.1) From Lactobacillus Plantarum At 2.40 A
Resolution
Length = 346
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 31/70 (44%)
Query: 281 SEISQTVRRVQHHPCIAVWAGNNEMEAHNYDYYQNLWDPSTAPKSRFCSEFGIQSLPQLS 340
+E+ + + ++ HP +G +Y Y + + D K + +GI +
Sbjct: 109 NEVDEXAKVIKSHPNQIFQSGFXRRYDDSYRYAKKIVDNGDIGKIIYXRGYGIDPISGXE 168
Query: 341 TFQKVATEAD 350
+F K ATEAD
Sbjct: 169 SFTKFATEAD 178
>pdb|1U9Y|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Z|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
Length = 284
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 13/76 (17%)
Query: 596 HIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQDSIPDYKNAVIVAKNPGA---AKKAT 652
+IT++ H+ I+ FF P A P L +Y++D + D +++A + GA AK A+
Sbjct: 118 KLITINPHETHIKDFFTIPFIYGDAVPKLAEYVKDKLND---PIVLAPDKGALEFAKTAS 174
Query: 653 S-------YAERLRLG 661
Y E+ RL
Sbjct: 175 KILNAEYDYLEKTRLS 190
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 1139 SFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEVVVTNTIPHDVQKLQCPKI 1198
+ A ++LK++GA KI H +L DA + + ++EVV T+T +V K+ ++
Sbjct: 220 TMATAVKLLKEQGAKKIIAACVHPVLIGDALNKLYSAGVEEVVGTDTYLSEVSKVSVAEV 279
>pdb|2DYI|A Chain A, Crystal Structure Of 16s Ribosomal Rna Processing Protein
Rimm From Thermus Thermophilus Hb8
pdb|3A1P|A Chain A, Structure Of Ribosome Maturation Protein Rimm And
Ribosomal Protein S19
pdb|3A1P|C Chain C, Structure Of Ribosome Maturation Protein Rimm And
Ribosomal Protein S19
Length = 162
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 147 LQITLASGVEMSTKSIKIGFRTVELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIP- 205
L + LA + + +G R + D + P LE+GRY+YF + +P+Y +G +
Sbjct: 53 LVVHLAGVTDRTLAEALVGLRVYAEVAD-LPP--LEEGRYYYFALIGLPVYVEGRQVGEV 109
Query: 206 VDVLPERSNNESTIR 220
VD+L + + IR
Sbjct: 110 VDILDAGAQDVLIIR 124
>pdb|3CK2|A Chain A, Crystal Structure Of Conserved Uncharacterized Protein
(Predicted Phosphoesterase Cog0622) From Streptococcus
Pneumoniae Tigr4
Length = 176
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 890 VLATHGLLFDYDGNWKMLHYFARKFFAPVLISPVFNVSSRTLE--VVLLN 937
++ THG LFD + N++ L Y+A++ A + + +V S LE ++ LN
Sbjct: 80 IIQTHGHLFDINFNFQKLDYWAQEEEAAICLYGHLHVPSAWLEGKILFLN 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,282,456
Number of Sequences: 62578
Number of extensions: 1465578
Number of successful extensions: 3464
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 3332
Number of HSP's gapped (non-prelim): 141
length of query: 1231
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1121
effective length of database: 8,089,757
effective search space: 9068617597
effective search space used: 9068617597
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)