RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15568
(1231 letters)
>gnl|CDD|225789 COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate
transport and metabolism].
Length = 808
Score = 169 bits (431), Expect = 4e-43
Identities = 105/543 (19%), Positives = 179/543 (32%), Gaps = 89/543 (16%)
Query: 44 SVELEGYHVARIRDILTDITYHEDLKSWHLSVRVILEAGLSQAVVKAKLTAELAVGKKPL 103
V L + DI ED L V I + + + +L ++ +
Sbjct: 173 DVMLYITPNTHVDDITVVTHLAEDCNHASLDV-KIQQVVANGLDLSVELRDA---EQQVV 228
Query: 104 RVDSLVNAEPSH--GEIEVVSTLMVLASEVELWWPNGYGEQP-LYNLQITLAS-GVEMST 159
GE++V +LW P E P LY L +TL +
Sbjct: 229 ATGQERGTGQGAAAGELKVE--------NPKLWSP----EDPYLYRLVVTLKDANTLIDA 276
Query: 160 KSIKIGFRTVELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNESTI 219
++++IGFRTVE+ +N P++ +G N D + R +E +
Sbjct: 277 EALRIGFRTVEIKDGL-------------LLINGKPVFIRGVNRHEDDPILGRVTDEDAM 323
Query: 220 RDLLVSTKEANMNMLRVWGGGVYMSDYFYETCDELGILIWQDMMFACNNYPATPTFLQSV 279
L KEANMN +R S+ FY+ CDELG+L+ + M + P P + + V
Sbjct: 324 ERDLKLMKEANMNSVRTSH--YPNSEEFYDLCDELGLLVIDEAMIETHGMPDDPEWRKEV 381
Query: 280 RSEISQTVRRVQHHPCIAVWAGNNEMEAHNYDYYQNLWDPSTAP------KSRFCSEFGI 333
E+ + V R ++HP I +W+ NE + + W ++ P + R I
Sbjct: 382 SEEVRRMVERDRNHPSIIIWSLGNESGHGSNHWALYRWFKASDPTRPVQYEGRGTEATDI 441
Query: 334 QSLPQLSTFQKVATEADLASWRTPFFDSR-QHLAGG--------TGILESSVGHQFEIGN 384
S +++V P H G G+ + G
Sbjct: 442 LSP----MYERVDEILYFPGSPRPLILCEYAHAMGNSYGGDYHYWGVFGE---YPRLQGG 494
Query: 385 LTLEYFAYLSQCM-------AAIHALHGRYATDQAGAIKTITEQMRRDKGVLREDGSGHN 437
++ + A G Y D + V +
Sbjct: 495 FIWDWVDQRLIPIDETGNQAYAYGGDFGDYPND---------RSFELNGLVFPDRQPNPG 545
Query: 438 -MGALYWQLND-----------IYQAGAIKTITEQMRRDKGVLREDGSGHNMGALYWQLN 485
A + + + ++ R K G +G+L WQLN
Sbjct: 546 LKEAKVGTQFWAFGDPKTFQGFLVTSENLFAEADRERLPKLRALL---GETLGSLEWQLN 602
Query: 486 DVWQAPTWSSIDYDGNWKMLHYFARKFFAPVLISPVLNVSSRTLEVVLLNDPNRPLHNVT 545
DV +WSS+D K Y R+F P L + + + ++ + +
Sbjct: 603 DVPPGASWSSLDEALRPKA-LYLTRRFTQPELTAWSEAAADGQFTLSEVSAAPLLVEDER 661
Query: 546 IVT 548
++
Sbjct: 662 LLQ 664
>gnl|CDD|223538 COG0462, PrsA, Phosphoribosylpyrophosphate synthetase [Nucleotide
transport and metabolism / Amino acid transport and
metabolism].
Length = 314
Score = 140 bits (356), Expect = 1e-36
Identities = 50/110 (45%), Positives = 77/110 (70%), Gaps = 1/110 (0%)
Query: 1116 ISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEES 1175
++++GDV G+ ++VDD++D + AA+ LK+RGA K+Y ATHG+ S A +E S
Sbjct: 206 MNLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAAATHGVFSGAALERLEAS 265
Query: 1176 PIDEVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLFR 1225
IDEV+VT+TIP +K + PK+ + ++ L++EAIRR+HN ES+S LF
Sbjct: 266 AIDEVIVTDTIPLP-EKKKIPKVSVISVAPLIAEAIRRIHNGESVSSLFD 314
Score = 106 bits (268), Expect = 5e-25
Identities = 41/107 (38%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 573 KMRKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQDSI 632
+ R I +KL+A ++ T+G ++T+DLH +IQGFFD PVDNL A+P L +YI++
Sbjct: 101 AFKPREPISAKLVANLLETAGADRVLTVDLHAPQIQGFFDIPVDNLYAAPLLAEYIREKY 160
Query: 633 PDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIHGEQKESESDEYEV 679
D + V+V+ + G K+A + A+RL +A+I K +S V
Sbjct: 161 -DLDDPVVVSPDKGGVKRARALADRLGAPLAIID---KRRDSSPNVV 203
Score = 68.8 bits (169), Expect = 3e-12
Identities = 21/49 (42%), Positives = 35/49 (71%)
Query: 849 ISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLL 897
++++GDV G+ ++VDD++D + AA+ LK+RGA K+Y ATHG+
Sbjct: 206 MNLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAAATHGVF 254
Score = 64.5 bits (158), Expect = 7e-11
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 7/63 (11%)
Query: 987 VDNLRASPFLLQYIQDSVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSY 1046
++ L AS D V+VT+TIP +K + PK+ + ++ L++EAIRR+HN ES+S
Sbjct: 259 LERLEASAI------DEVIVTDTIPLP-EKKKIPKVSVISVAPLIAEAIRRIHNGESVSS 311
Query: 1047 LFR 1049
LF
Sbjct: 312 LFD 314
Score = 46.8 bits (112), Expect = 4e-05
Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 968 LVTVKLCAAEEIQGFFDCPVDNLRASPFLLQYIQDSVVVTNTI 1010
++TV L A +IQGFFD PVDNL A+P L +YI++ + + +
Sbjct: 125 VLTVDL-HAPQIQGFFDIPVDNLYAAPLLAEYIREKYDLDDPV 166
Score = 45.3 bits (108), Expect = 1e-04
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 694 PDRVLISHVSQIPDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIHGEQKESESDEYEV 752
+L ++ + D + V+V+ + G K+A + A+RL +A+I K +S V
Sbjct: 148 AAPLLAEYIREKYDLDDPVVVSPDKGGVKRARALADRLGAPLAIID---KRRDSSPNVV 203
>gnl|CDD|234929 PRK01259, PRK01259, ribose-phosphate pyrophosphokinase; Provisional.
Length = 309
Score = 139 bits (354), Expect = 2e-36
Identities = 53/108 (49%), Positives = 74/108 (68%)
Query: 1118 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPI 1177
++GDV GR I+VDDM+D + AAE LK+RGA +Y ATH +LS A IE S I
Sbjct: 202 IIGDVEGRDCILVDDMIDTAGTLCKAAEALKERGAKSVYAYATHPVLSGGAIERIENSVI 261
Query: 1178 DEVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLFR 1225
DE+VVT++IP + +C KI+ + ++ LL+EAIRR+ N+ES+S LF
Sbjct: 262 DELVVTDSIPLSEEAKKCDKIRVLSVAPLLAEAIRRISNEESVSSLFD 309
Score = 94.4 bits (236), Expect = 7e-21
Identities = 40/93 (43%), Positives = 60/93 (64%), Gaps = 2/93 (2%)
Query: 573 KMRKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQDSI 632
K R R I +KL+A ++ T+G ++TMDLH +IQGFFD PVDNL SP LL+ I+
Sbjct: 97 KARSRVPITAKLVANLLETAGADRVLTMDLHADQIQGFFDIPVDNLYGSPILLEDIKQK- 155
Query: 633 PDYKNAVIVAKNPGAAKKATSYAERLRLGIAVI 665
+ +N V+V+ + G +A + A+RL +A+I
Sbjct: 156 -NLENLVVVSPDVGGVVRARALAKRLDADLAII 187
Score = 65.9 bits (162), Expect = 2e-11
Identities = 24/47 (51%), Positives = 32/47 (68%)
Query: 851 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLL 897
++GDV GR I+VDDM+D + AAE LK+RGA +Y ATH +L
Sbjct: 202 IIGDVEGRDCILVDDMIDTAGTLCKAAEALKERGAKSVYAYATHPVL 248
Score = 64.8 bits (159), Expect = 6e-11
Identities = 22/48 (45%), Positives = 35/48 (72%)
Query: 1002 DSVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLFR 1049
D +VVT++IP + +C KI+ + ++ LL+EAIRR+ N+ES+S LF
Sbjct: 262 DELVVTDSIPLSEEAKKCDKIRVLSVAPLLAEAIRRISNEESVSSLFD 309
Score = 50.9 bits (123), Expect = 2e-06
Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 5/37 (13%)
Query: 976 AEEIQGFFDCPVDNLRASPFLLQYIQDS-----VVVT 1007
A++IQGFFD PVDNL SP LL+ I+ VVV+
Sbjct: 128 ADQIQGFFDIPVDNLYGSPILLEDIKQKNLENLVVVS 164
>gnl|CDD|130318 TIGR01251, ribP_PPkin, ribose-phosphate pyrophosphokinase. Alternate
name: phosphoribosylpyrophosphate synthetase In some
systems, close homologs lacking enzymatic activity exist
and perform regulatory functions. The model is designated
subfamily rather than equivalog for this reason [Purines,
pyrimidines, nucleosides, and nucleotides, Purine
ribonucleotide biosynthesis].
Length = 308
Score = 130 bits (329), Expect = 4e-33
Identities = 47/111 (42%), Positives = 73/111 (65%), Gaps = 3/111 (2%)
Query: 1115 PISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEE 1174
+++VGDV G+ ++VDD++D + AAE+LK GA ++ ATHG+ S A I
Sbjct: 201 VMNLVGDVEGKDVVIVDDIIDTGGTIAKAAEILKSAGAKRVIAAATHGVFSGPAIERIAN 260
Query: 1175 SPIDEVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLFR 1225
+ ++EV+VTNTIPH+ PK+ + ++ L++EAIRR+HN ES+S LF
Sbjct: 261 AGVEEVIVTNTIPHEK---HKPKVSVISVAPLIAEAIRRIHNNESVSSLFD 308
Score = 98.5 bits (246), Expect = 3e-22
Identities = 41/111 (36%), Positives = 68/111 (61%), Gaps = 2/111 (1%)
Query: 573 KMRKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQDSI 632
K + R I +KL+A ++ T+G ++T+DLH +IQGFFD PVDNL ASP L +Y++ I
Sbjct: 98 KFKSREPISAKLVANLLETAGADRVLTVDLHSPQIQGFFDVPVDNLYASPVLAEYLKKKI 157
Query: 633 PDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIHGEQKESESDEYEVDLTG 683
D N V+V+ + G ++A A+ L +A+I + + ++ ++L G
Sbjct: 158 LD--NPVVVSPDAGGVERAKKVADALGCPLAIIDKRRISATNEVEVMNLVG 206
Score = 64.2 bits (157), Expect = 9e-11
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 848 PISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLL 897
+++VGDV G+ ++VDD++D + AAE+LK GA ++ ATHG+
Sbjct: 201 VMNLVGDVEGKDVVIVDDIIDTGGTIAKAAEILKSAGAKRVIAAATHGVF 250
Score = 57.3 bits (139), Expect = 2e-08
Identities = 23/48 (47%), Positives = 34/48 (70%), Gaps = 3/48 (6%)
Query: 1002 DSVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLFR 1049
+ V+VTNTIPH+ PK+ + ++ L++EAIRR+HN ES+S LF
Sbjct: 264 EEVIVTNTIPHEKH---KPKVSVISVAPLIAEAIRRIHNNESVSSLFD 308
Score = 41.5 bits (98), Expect = 0.002
Identities = 19/35 (54%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Query: 968 LVTVKLCAAEEIQGFFDCPVDNLRASPFLLQYIQD 1002
++TV L + +IQGFFD PVDNL ASP L +Y++
Sbjct: 122 VLTVDL-HSPQIQGFFDVPVDNLYASPVLAEYLKK 155
Score = 38.0 bits (89), Expect = 0.025
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 15/91 (16%)
Query: 665 IHGEQKESESDEYEVDLTGRPDKVYLSGLPDRVLISHVSQIPDYKNAVIVAKNPGAAKKA 724
+H Q + D +L P VL ++ + N V+V+ + G ++A
Sbjct: 127 LHSPQIQGFFDVPVDNLYASP-----------VLAEYLKKKIL-DNPVVVSPDAGGVERA 174
Query: 725 TSYAERLRLGIAVIHGEQKESESDEYEVDLT 755
A+ L +A+I K S EV++
Sbjct: 175 KKVADALGCPLAIID---KRRISATNEVEVM 202
>gnl|CDD|240290 PTZ00145, PTZ00145, phosphoribosylpyrophosphate synthetase;
Provisional.
Length = 439
Score = 110 bits (276), Expect = 2e-25
Identities = 47/107 (43%), Positives = 70/107 (65%)
Query: 1118 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPI 1177
+VG+V I+VDDM+D + AA+ LK GA +++ ATHGL S A IE SP+
Sbjct: 329 LVGNVYDSDVIIVDDMIDTSGTLCEAAKQLKKHGARRVFAFATHGLFSGPAIERIEASPL 388
Query: 1178 DEVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLF 1224
+EVVVT+T+ + C KI + +S+L+++AIRR+H KES++ LF
Sbjct: 389 EEVVVTDTVKSNKNIDSCKKITKLSVSVLVADAIRRIHQKESLNDLF 435
Score = 58.7 bits (142), Expect = 9e-09
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 8/74 (10%)
Query: 981 GFFDCP-VDNLRASPFLLQYIQDSVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMH 1039
G F P ++ + ASP + VVVT+T+ + C KI + +S+L+++AIRR+H
Sbjct: 373 GLFSGPAIERIEASPL------EEVVVTDTVKSNKNIDSCKKITKLSVSVLVADAIRRIH 426
Query: 1040 NKESMSYLFRNVDG 1053
KES++ LF NV G
Sbjct: 427 QKESLNDLF-NVKG 439
Score = 48.7 bits (116), Expect = 1e-05
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 573 KMRKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQGFFD--CPVDNLRASPFLLQYIQD 630
K+ R I + +A+M+ G+ ++ +DLH +IQGFF PVDNL A L Y
Sbjct: 216 KLSSRVPISAADVARMIEAMGVDRVVAIDLHSGQIQGFFGPRVPVDNLEAQLIGLDYFTK 275
Query: 631 SIPDYKNAVIVAKNPGAAKKATSYAERL 658
D VIV+ + G +A + + L
Sbjct: 276 K--DLYKPVIVSPDAGGVYRARKFQDGL 301
Score = 47.9 bits (114), Expect = 2e-05
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 851 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLL 897
+VG+V I+VDDM+D + AA+ LK GA +++ ATHGL
Sbjct: 329 LVGNVYDSDVIIVDDMIDTSGTLCEAAKQLKKHGARRVFAFATHGLF 375
>gnl|CDD|215209 PLN02369, PLN02369, ribose-phosphate pyrophosphokinase.
Length = 302
Score = 102 bits (257), Expect = 9e-24
Identities = 41/111 (36%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 1115 PISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEE 1174
++++GDV G+VAIMVDDM+D + A +L GA ++Y ATH + S A +
Sbjct: 193 VMNLIGDVKGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACATHAVFSPPAIERLSS 252
Query: 1175 SPIDEVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLFR 1225
EV+VTNTIP + P++ + ++ LL E I R+H+ S+S +F
Sbjct: 253 GLFQEVIVTNTIPVSEKN-YFPQLTVLSVANLLGETIWRVHDDCSVSSIFD 302
Score = 67.8 bits (166), Expect = 6e-12
Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 573 KMRKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQDSI 632
K + R I +KL+A ++ +G ++ DLH + G+FD PVD++ P +L Y+
Sbjct: 88 KTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKT 147
Query: 633 PDYKNAVIVAKNPGAAKKATSYAERLR-LGIAVI 665
+ V+V+ + G +A ++A++L +A++
Sbjct: 148 ISSPDLVVVSPDVGGVARARAFAKKLSDAPLAIV 181
Score = 63.9 bits (156), Expect = 1e-10
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 839 HGDGSKEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLL 897
G E ++++GDV G+VAIMVDDM+D + A +L GA ++Y ATH +
Sbjct: 186 QGHNVAE--VMNLIGDVKGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACATHAVF 242
Score = 43.1 bits (102), Expect = 6e-04
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 986 PVDNLRASPFLLQYIQDSVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMS 1045
P R S L Q V+VTNTIP + P++ + ++ LL E I R+H+ S+S
Sbjct: 244 PPAIERLSSGLFQE----VIVTNTIPVSEKN-YFPQLTVLSVANLLGETIWRVHDDCSVS 298
Query: 1046 YLFR 1049
+F
Sbjct: 299 SIFD 302
Score = 32.7 bits (75), Expect = 1.0
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 978 EIQGFFDCPVDNLRASPFLLQYI-------QDSVVVTNTIPH--DVQKLQCPKIKTVDIS 1028
+ G+FD PVD++ P +L Y+ D VVV+ P V + + K D
Sbjct: 121 QSMGYFDIPVDHVYGQPVILDYLASKTISSPDLVVVS---PDVGGVARARAFAKKLSDAP 177
Query: 1029 ILLSEAIRRMHNKESMSYLFRNVDGR 1054
+ + + R+ HN + L +V G+
Sbjct: 178 LAIVDKRRQGHNVAEVMNLIGDVKGK 203
>gnl|CDD|179893 PRK04923, PRK04923, ribose-phosphate pyrophosphokinase; Provisional.
Length = 319
Score = 100 bits (251), Expect = 6e-23
Identities = 47/115 (40%), Positives = 69/115 (60%)
Query: 1110 AKEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAP 1169
A ++++GDV G+ ++VDD+VD + AAA LK RGA K+ TH +LS A
Sbjct: 203 ANVATVMNIIGDVQGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAYITHPVLSGPAV 262
Query: 1170 LLIEESPIDEVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLF 1224
I S +DE+VVT+TIP C KI+ + ++ LL+E IRR+ ES+S L+
Sbjct: 263 DNINNSQLDELVVTDTIPLSEAARACAKIRQLSVAELLAETIRRIAFGESVSSLY 317
Score = 75.0 bits (184), Expect = 3e-14
Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 16/108 (14%)
Query: 551 YAWNDTRPFRSVKTPLVTVVSGKMRKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQGF 610
Y+ D R RS + P I +K+ AKM+ G ++T+DLH +IQGF
Sbjct: 97 YSRQDRRM-RSSRVP--------------ITAKVAAKMISAMGADRVLTVDLHADQIQGF 141
Query: 611 FDCPVDNLRASPFLLQYIQDSIPDYKNAVIVAKNPGAAKKATSYAERL 658
FD PVDN+ ASP LL I + N ++V+ + G +A + A+RL
Sbjct: 142 FDVPVDNVYASPLLLADIWRAY-GTDNLIVVSPDVGGVVRARAVAKRL 188
Score = 51.1 bits (122), Expect = 2e-06
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 849 ISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLL 897
++++GDV G+ ++VDD+VD + AAA LK RGA K+ TH +L
Sbjct: 209 MNIIGDVQGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAYITHPVL 257
Score = 49.9 bits (119), Expect = 4e-06
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 987 VDNLRASPFLLQYIQDSVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSY 1046
VDN+ S D +VVT+TIP C KI+ + ++ LL+E IRR+ ES+S
Sbjct: 262 VDNINNSQL------DELVVTDTIPLSEAARACAKIRQLSVAELLAETIRRIAFGESVSS 315
Query: 1047 LF 1048
L+
Sbjct: 316 LY 317
Score = 46.1 bits (109), Expect = 7e-05
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 24/76 (31%)
Query: 953 YAWNDTRPFRSVKTPLVTVKLCA-----------------AEEIQGFFDCPVDNLRASPF 995
Y+ D R RS + P +T K+ A A++IQGFFD PVDN+ ASP
Sbjct: 97 YSRQDRRM-RSSRVP-ITAKVAAKMISAMGADRVLTVDLHADQIQGFFDVPVDNVYASPL 154
Query: 996 LL-----QYIQDSVVV 1006
LL Y D+++V
Sbjct: 155 LLADIWRAYGTDNLIV 170
>gnl|CDD|179535 PRK03092, PRK03092, ribose-phosphate pyrophosphokinase; Provisional.
Length = 304
Score = 96.9 bits (242), Expect = 1e-21
Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
Query: 1118 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPI 1177
VVGDV GR ++VDDM+D + A LK+ GA + + ATHG+LS A ++
Sbjct: 195 VVGDVEGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHGVLSGPAAERLKNCGA 254
Query: 1178 DEVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLF 1224
EVVVT+T+P +K + K+ + I+ LL+ AIR + S++ LF
Sbjct: 255 REVVVTDTLPIPEEK-RFDKLTVLSIAPLLARAIREVFEDGSVTSLF 300
Score = 76.1 bits (188), Expect = 9e-15
Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 573 KMRKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQDSI 632
K R R I ++L+A + T+G I+T+DLH +IQGFFD PVD+L A P L Y++D
Sbjct: 86 KHRGREPISARLVADLFKTAGADRIMTVDLHTAQIQGFFDGPVDHLFAMPLLADYVRDKY 145
Query: 633 PDYKNAVIVAKNPGAAKKATSYAERL-RLGIAVIH 666
N +V+ + G + A +A+RL +A IH
Sbjct: 146 DL-DNVTVVSPDAGRVRVAEQWADRLGGAPLAFIH 179
Score = 61.5 bits (150), Expect = 7e-10
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 851 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLFD 899
VVGDV GR ++VDDM+D + A LK+ GA + + ATHG+L
Sbjct: 195 VVGDVEGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHGVLSG 243
Score = 48.4 bits (116), Expect = 1e-05
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 968 LVTVKLCAAEEIQGFFDCPVDNLRASPFLLQYIQDSVVVTNT 1009
++TV L A+ IQGFFD PVD+L A P L Y++D + N
Sbjct: 110 IMTVDLHTAQ-IQGFFDGPVDHLFAMPLLADYVRDKYDLDNV 150
Score = 33.4 bits (77), Expect = 0.59
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 1002 DSVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLFRNVDGRA 1055
VVVT+T+P +K + K+ + I+ LL+ AIR + S++ LF DG A
Sbjct: 255 REVVVTDTLPIPEEK-RFDKLTVLSIAPLLARAIREVFEDGSVTSLF---DGLA 304
>gnl|CDD|167353 PRK02269, PRK02269, ribose-phosphate pyrophosphokinase; Provisional.
Length = 320
Score = 91.4 bits (227), Expect = 1e-19
Identities = 41/108 (37%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 1117 SVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESP 1176
+++G+V G+ I++DDM+D + AA+ L + GA ++Y TH +LS A I++S
Sbjct: 210 NIIGNVKGKKCILIDDMIDTAGTICHAADALAEAGATEVYASCTHPVLSGPALDNIQKSA 269
Query: 1177 IDEVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLF 1224
I+++VV +TI ++L KI+ + I+ LL EAI R+H K +S LF
Sbjct: 270 IEKLVVLDTIYLPEERL-IDKIEQISIADLLGEAIIRIHEKRPLSPLF 316
Score = 79.8 bits (197), Expect = 8e-16
Identities = 37/107 (34%), Positives = 59/107 (55%)
Query: 573 KMRKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQDSI 632
K R R I SKL+A M+ +G+ ++T+DLH +IQGFFD PVD+L +P + Y
Sbjct: 102 KARSREPITSKLVANMLEVAGVDRLLTVDLHAAQIQGFFDIPVDHLMGAPLIADYFDRRG 161
Query: 633 PDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIHGEQKESESDEYEV 679
+ V+V+ + G +A A+ L+ IA+I + + + EV
Sbjct: 162 LVGDDVVVVSPDHGGVTRARKLAQFLKTPIAIIDKRRSVDKMNTSEV 208
Score = 49.4 bits (118), Expect = 5e-06
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 850 SVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLL 897
+++G+V G+ I++DDM+D + AA+ L + GA ++Y TH +L
Sbjct: 210 NIIGNVKGKKCILIDDMIDTAGTICHAADALAEAGATEVYASCTHPVL 257
Score = 43.6 bits (103), Expect = 4e-04
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 968 LVTVKLCAAEEIQGFFDCPVDNLRASPFLLQYIQDSVVVTNTI 1010
L+TV L AA+ IQGFFD PVD+L +P + Y +V + +
Sbjct: 126 LLTVDLHAAQ-IQGFFDIPVDHLMGAPLIADYFDRRGLVGDDV 167
Score = 37.8 bits (88), Expect = 0.028
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 987 VDNLRASPFLLQYIQDSVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSY 1046
+DN++ S + +VV +TI ++L KI+ + I+ LL EAI R+H K +S
Sbjct: 262 LDNIQKSAI------EKLVVLDTIYLPEERL-IDKIEQISIADLLGEAIIRIHEKRPLSP 314
Query: 1047 LF 1048
LF
Sbjct: 315 LF 316
>gnl|CDD|235072 PRK02812, PRK02812, ribose-phosphate pyrophosphokinase; Provisional.
Length = 330
Score = 90.6 bits (225), Expect = 2e-19
Identities = 42/110 (38%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
Query: 1116 ISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEES 1175
++V+GDV G+ AI+VDDM+D + A +L+ GA ++Y ATH + S A +
Sbjct: 222 LNVIGDVKGKTAILVDDMIDTGGTICEGARLLRKEGAKQVYACATHAVFSPPAIERLSSG 281
Query: 1176 PIDEVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLFR 1225
+EV+VTNTIP ++ + P++K + ++ +L EAI R+H + S+S +FR
Sbjct: 282 LFEEVIVTNTIPVP-EERRFPQLKVLSVANMLGEAIWRIHEESSVSSMFR 330
Score = 64.0 bits (156), Expect = 1e-10
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 573 KMRKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQDSI 632
K R I +KL+A ++ +G ++ MDLH +IQG+FD P D++ SP LL Y+ +
Sbjct: 118 KTAGRESITAKLVANLITKAGADRVLAMDLHSAQIQGYFDIPCDHVYGSPVLLDYL--AS 175
Query: 633 PDYKNAVIVAKNPGAAKKATSYAERLR 659
+ ++ V+V+ + G +A ++A++L
Sbjct: 176 KNLEDIVVVSPDVGGVARARAFAKKLN 202
Score = 53.2 bits (128), Expect = 4e-07
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 849 ISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATH 894
++V+GDV G+ AI+VDDM+D + A +L+ GA ++Y ATH
Sbjct: 222 LNVIGDVKGKTAILVDDMIDTGGTICEGARLLRKEGAKQVYACATH 267
Score = 40.9 bits (96), Expect = 0.003
Identities = 19/46 (41%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 1004 VVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLFR 1049
V+VTNTIP ++ + P++K + ++ +L EAI R+H + S+S +FR
Sbjct: 286 VIVTNTIPVP-EERRFPQLKVLSVANMLGEAIWRIHEESSVSSMFR 330
Score = 36.3 bits (84), Expect = 0.089
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
Query: 978 EIQGFFDCPVDNLRASPFLLQYI-----QDSVVVT 1007
+IQG+FD P D++ SP LL Y+ +D VVV+
Sbjct: 151 QIQGYFDIPCDHVYGSPVLLDYLASKNLEDIVVVS 185
>gnl|CDD|235039 PRK02458, PRK02458, ribose-phosphate pyrophosphokinase; Provisional.
Length = 323
Score = 83.6 bits (207), Expect = 4e-17
Identities = 38/109 (34%), Positives = 73/109 (66%), Gaps = 4/109 (3%)
Query: 1118 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPI 1177
++GDV G+ AI++DD+++ +F AA++++ GA +IY +A+HGL + A ++E +PI
Sbjct: 212 IIGDVAGKKAILIDDILNTGKTFAEAAKIVEREGATEIYAVASHGLFAGGAAEVLENAPI 271
Query: 1178 DEVVVTNTIPHDVQKLQCPK-IKTVDISILLSEAIRRMHNKESMSYLFR 1225
E++VT+++ K + PK + + S L+++AI R+H ++ +S LF
Sbjct: 272 KEILVTDSV---ATKERVPKNVTYLSASELIADAIIRIHERKPLSPLFA 317
Score = 73.6 bits (181), Expect = 8e-14
Identities = 40/101 (39%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 577 RGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQDSIPDYK 636
R I +KL+A M+ +G+ ++T+DLH ++QGFFD PVDNL P ++
Sbjct: 110 REPITAKLVANMLVKAGVDRVLTLDLHAVQVQGFFDIPVDNLFTVPLFAKHYCKKGLSGS 169
Query: 637 NAVIVA-KNPGAAKKATSYAERLRLGIAVIHGEQKESESDE 676
+ V+V+ KN G K+A S AE L IA+I Q +SE +E
Sbjct: 170 DVVVVSPKNSG-IKRARSLAEYLDAPIAIIDYAQDDSEREE 209
Score = 50.1 bits (120), Expect = 4e-06
Identities = 19/47 (40%), Positives = 35/47 (74%)
Query: 851 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLL 897
++GDV G+ AI++DD+++ +F AA++++ GA +IY +A+HGL
Sbjct: 212 IIGDVAGKKAILIDDILNTGKTFAEAAKIVEREGATEIYAVASHGLF 258
Score = 34.7 bits (80), Expect = 0.29
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Query: 976 AEEIQGFFDCPVDNLRASPFLLQYI-------QDSVVVT 1007
A ++QGFFD PVDNL P ++ D VVV+
Sbjct: 137 AVQVQGFFDIPVDNLFTVPLFAKHYCKKGLSGSDVVVVS 175
Score = 33.2 bits (76), Expect = 0.92
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 982 FFDCPVDNLRASPFLLQYIQDSVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNK 1041
F + L +P + DSV +P +V L S L+++AI R+H +
Sbjct: 258 FAGGAAEVLENAPIKEILVTDSVATKERVPKNVTYLSA--------SELIADAIIRIHER 309
Query: 1042 ESMSYLFR 1049
+ +S LF
Sbjct: 310 KPLSPLFA 317
>gnl|CDD|179062 PRK00553, PRK00553, ribose-phosphate pyrophosphokinase; Provisional.
Length = 332
Score = 77.6 bits (191), Expect = 4e-15
Identities = 43/123 (34%), Positives = 75/123 (60%), Gaps = 7/123 (5%)
Query: 1106 PQHPAKEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLS 1165
P+H E I+V+G+V + ++VDDM+D + +AAA++LK + A K+ V+ATHGL +
Sbjct: 202 PKHNVAES--INVLGEVKNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVMATHGLFN 259
Query: 1166 SDAPLLIEES----PIDEVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMS 1221
+A L +E+ ID++ V+N+IP + + P+ K VD++ L E + N S+S
Sbjct: 260 KNAIQLFDEAFKKKLIDKLFVSNSIPQTKFE-KKPQFKVVDLAHLYEEVLLCYANGGSIS 318
Query: 1222 YLF 1224
++
Sbjct: 319 AIY 321
Score = 63.8 bits (155), Expect = 1e-10
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 573 KMRKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQDSI 632
K R I SKL+A ++ +G+ + D+H + QGFFD PVD LR L + + +
Sbjct: 106 KTAGREPITSKLVADLLTKAGVTRVTLTDIHSDQTQGFFDIPVDILRTYHVFLSRVLELL 165
Query: 633 PDYKNAVIVAKNPGAAKKATSYAERLRLGIAVI 665
K+ V+V+ + G K+A AE L L +A+I
Sbjct: 166 -GKKDLVVVSPDYGGVKRARLIAESLELPLAII 197
Score = 51.8 bits (124), Expect = 1e-06
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 849 ISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLFDYDGNWKMLH 908
I+V+G+V + ++VDDM+D + +AAA++LK + A K+ V+ATHG LF+ +
Sbjct: 210 INVLGEVKNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVMATHG-LFNKNAIQLFDE 268
Query: 909 YFARKFFAPVLIS 921
F +K + +S
Sbjct: 269 AFKKKLIDKLFVS 281
Score = 33.4 bits (76), Expect = 0.82
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 976 AEEIQGFFDCPVDNLRASPFLLQY------IQDSVVVT 1007
+++ QGFFD PVD LR L +D VVV+
Sbjct: 137 SDQTQGFFDIPVDILRTYHVFLSRVLELLGKKDLVVVS 174
>gnl|CDD|234868 PRK00934, PRK00934, ribose-phosphate pyrophosphokinase; Provisional.
Length = 285
Score = 68.8 bits (169), Expect = 2e-12
Identities = 26/73 (35%), Positives = 47/73 (64%)
Query: 1121 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 1180
DV G+ ++VDD++ + A ++LK++GA K+YV H +L DA L + + +DE+
Sbjct: 201 DVKGKDVLIVDDIISTGGTMATAIKILKEQGAKKVYVACVHPVLVGDAILKLYNAGVDEI 260
Query: 1181 VVTNTIPHDVQKL 1193
+VT+T+ +V K+
Sbjct: 261 IVTDTLESEVSKI 273
Score = 55.7 bits (135), Expect = 4e-08
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 576 KRG-CIVSKLLAKMMCTSGLKHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQDSIPD 634
K G I ++ +AK++ IIT+++H+ I FF P NL A+P + +YI D
Sbjct: 97 KPGEPISARAIAKIISAYY-DRIITINIHEPSILEFFPIPFINLDAAPLIAEYIGD---K 152
Query: 635 YKNAVIVAKNPGAAKKATSYAERLRLGIAVIHGEQKESESDEYE-----VDLTGR 684
+ +++A + GA + A AE LG + E+ E E +D+ G+
Sbjct: 153 LDDPLVLAPDKGALELAKEAAE--ILGCEYDYLEKTRISPTEVEIAPKNLDVKGK 205
Score = 45.3 bits (108), Expect = 1e-04
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 854 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLL 897
DV G+ ++VDD++ + A ++LK++GA K+YV H +L
Sbjct: 201 DVKGKDVLIVDDIISTGGTMATAIKILKEQGAKKVYVACVHPVL 244
>gnl|CDD|180714 PRK06827, PRK06827, phosphoribosylpyrophosphate synthetase;
Provisional.
Length = 382
Score = 67.7 bits (166), Expect = 1e-11
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 1120 GDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLI----EES 1175
DV G+ ++VDDM+ S + AA+ LK RGA KI V AT G ++ EE
Sbjct: 260 RDVEGKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFGFF-TNGLEKFDKAYEEG 318
Query: 1176 PIDEVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLFRN 1226
D ++ TN + H + L P VD+S L++ I +++ S+S L
Sbjct: 319 YFDRIIGTNLVYHPEELLSKPWYIEVDMSKLIARIIDALNHDVSLSKLLDP 369
Score = 46.5 bits (111), Expect = 6e-05
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 853 GDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGL 896
DV G+ ++VDDM+ S + AA+ LK RGA KI V AT G
Sbjct: 260 RDVEGKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFGF 303
Score = 37.6 bits (88), Expect = 0.032
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 573 KMRKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQGFFDCP-VDNLRAS----PFLLQY 627
K + R + L + + G+ +IIT D H I+ +NL S LL+
Sbjct: 139 KRKGRESLDCALALQELEELGVDNIITFDAHDPRIENAIPLMGFENLYPSYQIIKALLKN 198
Query: 628 IQDSIPDYKNAVIVAKNPGAAKKATSYAERLRLGIAVI 665
+D D + ++++ + GA +A YA L + + +
Sbjct: 199 EKDLEIDKDHLMVISPDTGAMDRAKYYASVLGVDLGLF 236
Score = 34.2 bits (79), Expect = 0.44
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 1002 DSVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLFRNVD 1052
D ++ TN + H + L P VD+S L++ I +++ S+S L D
Sbjct: 321 DRIIGTNLVYHPEELLSKPWYIEVDMSKLIARIIDALNHDVSLSKLLDPTD 371
>gnl|CDD|206754 cd06223, PRTases_typeI, Phosphoribosyl transferase (PRT)-type I
domain. Phosphoribosyl transferase (PRT) domain. The
type I PRTases are identified by a conserved PRPP binding
motif which features two adjacent acidic residues
surrounded by one or more hydrophobic residue. PRTases
catalyze the displacement of the alpha-1'-pyrophosphate
of 5-phosphoribosyl-alpha1-pyrpphosphate (PRPP) by a
nitrogen-containing nucleophile. The reaction products
are an alpha-1 substituted ribose-5'-phosphate and a free
pyrophosphate (PP). PRPP, an activated form of
ribose-5-phosphate, is a key metabolite connecting
nucleotide synthesis and salvage pathways. The type I
PRTase family includes a range of diverse phosphoribosyl
transferase enzymes and regulatory proteins of the
nucleotide synthesis and salvage pathways, including
adenine phosphoribosyltransferase EC:2.4.2.7.,
hypoxanthine-guanine-xanthine phosphoribosyltransferase,
hypoxanthine phosphoribosyltransferase EC:2.4.2.8.,
ribose-phosphate pyrophosphokinase EC:2.7.6.1.,
amidophosphoribosyltransferase EC:2.4.2.14., orotate
phosphoribosyltransferase EC:2.4.2.10., uracil
phosphoribosyltransferase EC:2.4.2.9., and
xanthine-guanine phosphoribosyltransferase EC:2.4.2.22.
Length = 130
Score = 61.3 bits (149), Expect = 5e-11
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 1115 PISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEE 1174
+ + GDV G+ ++VDD++ + +AA E+LK+ GA + V A
Sbjct: 62 ELPLGGDVKGKRVLLVDDVIATGGTLLAAIELLKEAGAKVVGVAVLLDKPEGGA--RELA 119
Query: 1175 SPIDEVVVTNT 1185
SP D V T
Sbjct: 120 SPGDPVYSLFT 130
Score = 50.9 bits (122), Expect = 2e-07
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 848 PISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLF 898
+ + GDV G+ ++VDD++ + +AA E+LK+ GA + V
Sbjct: 62 ELPLGGDVKGKRVLLVDDVIATGGTLLAAIELLKEAGAKVVGVAVLLDKPE 112
Score = 36.2 bits (84), Expect = 0.026
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 620 ASPFLLQYIQDSIPDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIHGEQKESESDEYEV 679
A L + I++ + + V+V G A + A L L +A I E+K E
Sbjct: 1 AGRLLAEEIREDL--LEPDVVVGILRGGLPLAAALARALGLPLAFIRKERKGPGRTPSEP 58
Query: 680 DLTGRPDKVYLSGLPDRVLI 699
P + G RVL+
Sbjct: 59 YGLELPLGGDVKG--KRVLL 76
Score = 28.5 bits (64), Expect = 9.3
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 708 YKNAVIVAKNPGAAKKATSYAERLRLGIAVIHGEQKE 744
+ V+V G A + A L L +A I E+K
Sbjct: 14 LEPDVVVGILRGGLPLAAALARALGLPLAFIRKERKG 50
>gnl|CDD|236673 PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha;
Reviewed.
Length = 1021
Score = 63.5 bits (155), Expect = 7e-10
Identities = 59/273 (21%), Positives = 104/273 (38%), Gaps = 37/273 (13%)
Query: 45 VELEGYHVARIRDILTDITYHEDLKSWHLSVRVILEAGLSQAVVKAKLTAELAVGKKPLR 104
V L G + I D + ED LS V+LE L+ + V L L G++
Sbjct: 201 VYLVGKPLTHINDFTVRTDFDEDYCDATLSCEVVLE-NLAASPVVTTLEYTLFDGER--V 257
Query: 105 VDSLVNAEPSHGEIEVVSTLMVLASEVELWWPNGYGEQP-LYNLQITL--ASGVEMSTKS 161
V S + ++ S + + W E P LY+L +TL A+G +
Sbjct: 258 VHSSAIDHLAIEKLTSASFAFTVEQ-PQQW----SAESPYLYHLVMTLKDANGNVLEVVP 312
Query: 162 IKIGFRTVELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNESTIRD 221
++GFR +++ + F+ +N + G N D R+ +
Sbjct: 313 QRVGFRDIKV-----------RDGLFW--INNRYVKLHGVNRHDNDHRKGRAVGMDRVEK 359
Query: 222 LLVSTKEANMNMLRVWGGGVYMSD-YFYETCDELGILIWQDMMFACNNYPAT-------- 272
+ K+ N+N +R Y +D FYE CD G+ + + + +
Sbjct: 360 DIQLMKQHNINSVRT---AHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITD 416
Query: 273 -PTFLQSVRSEISQTVRRVQHHPCIAVWAGNNE 304
P + + I + + ++HP I +W+ NE
Sbjct: 417 DPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNE 449
>gnl|CDD|235960 PRK07199, PRK07199, phosphoribosylpyrophosphate synthetase;
Provisional.
Length = 301
Score = 56.1 bits (136), Expect = 4e-08
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 1124 GRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEVVVT 1183
GR ++VDD+V + + AA L+ GA + H L + DA + + I VV T
Sbjct: 211 GRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDCVVVHALFAGDAYSALAAAGIARVVST 270
Query: 1184 NTIPHDVQKLQCPKIKTVDISILLSEAIRRM 1214
+T+PH + ++ LL+EA+RR
Sbjct: 271 DTVPHPSN--------AISLAPLLAEALRRE 293
Score = 32.2 bits (74), Expect = 1.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 857 GRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGL 896
GR ++VDD+V + + AA L+ GA + H L
Sbjct: 211 GRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDCVVVHAL 250
>gnl|CDD|216070 pfam00703, Glyco_hydro_2, Glycosyl hydrolases family 2. This
family contains beta-galactosidase, beta-mannosidase and
beta-glucuronidase activities.
Length = 109
Score = 46.4 bits (110), Expect = 4e-06
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 10/117 (8%)
Query: 53 ARIRDILTDITYH-EDLKSWHLSVRVILEAGLSQAVVKAKLTAELAVGKKPLRVDSLVNA 111
I D+ +T +D K+ +SV V +E S A V+ L+ E+ +
Sbjct: 1 VHIEDV--FVTPDLDDDKTAKVSVEVEVE-NSSAATVEVTLSDEIKDADGKEVAAASAVL 57
Query: 112 EPSHGEIEVVSTLMVLASEVELWWPNGYGEQPLYNLQITL-ASGVEMSTKSIKIGFR 167
+G+ ++ V +LW P LY L + L A G + S + GFR
Sbjct: 58 VLGNGKTTILVEFEV--KNPKLWSP---ETPNLYTLTVELDADGKVIDEVSTRFGFR 109
>gnl|CDD|236548 PRK09525, lacZ, beta-D-galactosidase; Reviewed.
Length = 1027
Score = 41.5 bits (98), Expect = 0.004
Identities = 69/292 (23%), Positives = 113/292 (38%), Gaps = 56/292 (19%)
Query: 54 RIRDILTDITYHEDLKSWHLSVRVILEAGL-SQAVVKAKL-TAELAVGKKPLRVDSLVNA 111
++ D +D + L V + L + V +L E V + +
Sbjct: 222 QLSDFHITTELDDDFRRAVLEVEAQVNGELRDELRVTVQLWDGETLVASGTAPFGTEIID 281
Query: 112 EPSHGEIEVVSTLMVLASEVELWWPNGYGEQP-LYNLQITL--ASGVEMSTKSIKIGFRT 168
E V L V +LW E P LY ++L A G + ++ +GFR
Sbjct: 282 ERGAYADRVTLRLNV--ENPKLW----SAETPNLYRAVVSLLDADGTLIEAEAYDVGFRK 335
Query: 169 VELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERS---NNESTIRDLLVS 225
VE+ E G ++N P+ +G N PE + E+ ++D+L+
Sbjct: 336 VEI----------ENGL---LKLNGKPLLIRGVNRHEHH--PEHGQVMDEETMVQDILL- 379
Query: 226 TKEANMNMLRVWGGGVYMSDY-----FYETCDELGIL------IWQDMMFACNNYPATPT 274
K+ N N +R S Y +YE CD G+ I M N P
Sbjct: 380 MKQHNFNAVRC-------SHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDPR 432
Query: 275 FLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEAHNYD-YYQNLW----DPS 320
+L ++ +++ V+R ++HP I +W+ GN N+D Y+ W DPS
Sbjct: 433 WLPAMSERVTRMVQRDRNHPSIIIWSLGNESGHGANHDALYR--WIKSNDPS 482
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional.
Length = 464
Score = 41.1 bits (97), Expect = 0.004
Identities = 43/163 (26%), Positives = 65/163 (39%), Gaps = 37/163 (22%)
Query: 1021 KIKTVDISILLSEAIRRMHNKESMSYLFRNVDGRASPPPSSIAPPSSPAVDLVTKTMPSV 1080
K+ T I++LL E ES S D A+P ++ A ++PA +
Sbjct: 69 KVNTP-IAVLLEEG-------ESAS------DAGAAPAAAAEAAAAAPAAAAAAAAKKAA 114
Query: 1081 DGRASPPPPPVLPPSSRTMEMDVGVPQHPA-KEKPPISVVGDVGGRVAI---MVDDMVDD 1136
A+P P + P PA E ++V R A+ M ++M D
Sbjct: 115 PAPAAPAAPAAEVAAD---------PDIPAGTEMVTMTV------REALRDAMAEEMRRD 159
Query: 1137 VHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDE 1179
FV EV + +GAYK+ T GLL + ++PI E
Sbjct: 160 EDVFVMGEEVAEYQGAYKV----TQGLLQEFGARRVIDTPITE 198
>gnl|CDD|217247 pfam02836, Glyco_hydro_2_C, Glycosyl hydrolases family 2, TIM
barrel domain. This family contains beta-galactosidase,
beta-mannosidase and beta-glucuronidase activities.
Length = 297
Score = 40.5 bits (95), Expect = 0.004
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 247 FYETCDELGILI-----------WQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPC 295
+Y+ CDE G+ + WQ N P +L++ + V+R ++HP
Sbjct: 64 WYQLCDEYGLYVIDETNLETHGLWQ-KFGEINVLADNPEWLKAHLQRAREMVQRDKNHPS 122
Query: 296 IAVWAGNNE 304
I +W+ NE
Sbjct: 123 IIIWSLGNE 131
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 36.7 bits (85), Expect = 0.091
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 1053 GRASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSSRTMEMDVGVPQHPAKE 1112
++S AP S+ T+ A P PP P + V Q ++
Sbjct: 403 SQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQA------VRPAQFKEEK 456
Query: 1113 KPPISVVGDVG 1123
K P+S V +G
Sbjct: 457 KIPVSKVSSLG 467
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 36.3 bits (84), Expect = 0.12
Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 5/65 (7%)
Query: 1053 GRASPPPSSIAPPSSPAVDLVTKTMPSVDGRASP--PPPPVLPPSSRTMEMDVGVPQHPA 1110
R ++ PP P + T A P P P +R + V + P
Sbjct: 387 TRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAA---IPVDEKPK 443
Query: 1111 KEKPP 1115
P
Sbjct: 444 YTPPA 448
Score = 32.5 bits (74), Expect = 1.6
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 9/64 (14%)
Query: 1055 ASPPPSSIAP---PSSPAVDLVTKTMPSVDGRASPPPPPVLPPSSRTMEMDVGVPQHPAK 1111
+ PS + P PS+ +P + PP +PP V P
Sbjct: 372 TAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPR------PVAPPVPHTP 425
Query: 1112 EKPP 1115
E P
Sbjct: 426 ESAP 429
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP). This family
contains bacterial fibronectin-attachment proteins (FAP).
Family members are rich in alanine and proline, are
approximately 300 long, and seem to be restricted to
mycobacteria. These proteins contain a
fibronectin-binding motif that allows mycobacteria to
bind to fibronectin in the extracellular matrix.
Length = 297
Score = 35.3 bits (81), Expect = 0.17
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 1055 ASPPPSSIAPPSSPAVDLVTKTMPSV--DGRASPPPPPVLPPSSRTMEMDVGVPQHPAKE 1112
S ++ AP + P D A+PPPPP P + +D P PA E
Sbjct: 48 PSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPPPAPE 107
Query: 1113 KPPISVVGDVGG 1124
P + VGG
Sbjct: 108 --PGRIDNAVGG 117
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 34.6 bits (80), Expect = 0.41
Identities = 16/63 (25%), Positives = 19/63 (30%)
Query: 1055 ASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSSRTMEMDVGVPQHPAKEKP 1114
AS + PP +PPP P PP + T Q PA P
Sbjct: 517 ASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSP 576
Query: 1115 PIS 1117
P
Sbjct: 577 PPP 579
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA
carboxylase.
Length = 274
Score = 33.7 bits (77), Expect = 0.47
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 14/75 (18%)
Query: 1056 SPPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSSRTME---------MDVGVP 1106
PPP ++ P S PA S SPPP P PP ++ + M
Sbjct: 155 PPPPHAMPPASPPAAQPAPSAPAS-----SPPPTPASPPPAKAPKSSHPPLKSPMAGTFY 209
Query: 1107 QHPAKEKPPISVVGD 1121
+ PA +PP VGD
Sbjct: 210 RSPAPGEPPFVKVGD 224
>gnl|CDD|177934 PLN02297, PLN02297, ribose-phosphate pyrophosphokinase.
Length = 326
Score = 33.9 bits (78), Expect = 0.53
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 853 GDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHG 895
G+ GR ++VDD+V + + +VL GA K+ THG
Sbjct: 226 GNPAGRHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHG 268
Score = 33.9 bits (78), Expect = 0.53
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 1120 GDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHG 1162
G+ GR ++VDD+V + + +VL GA K+ THG
Sbjct: 226 GNPAGRHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHG 268
>gnl|CDD|234653 PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.
Length = 209
Score = 33.1 bits (77), Expect = 0.57
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 854 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 892
D+ R I+VD M+ S +AA ++LK RGA I VL
Sbjct: 121 DIDERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIKVLC 159
Score = 33.1 bits (77), Expect = 0.57
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 1121 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 1159
D+ R I+VD M+ S +AA ++LK RGA I VL
Sbjct: 121 DIDERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIKVLC 159
>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729). This
family of proteins is found in viruses. Proteins in this
family are typically between 145 and 1707 amino acids in
length. The family is found in association with
pfam01443, pfam01661, pfam05417, pfam01660, pfam00978.
There is a single completely conserved residue L that may
be functionally important.
Length = 115
Score = 32.0 bits (73), Expect = 0.60
Identities = 15/50 (30%), Positives = 15/50 (30%), Gaps = 4/50 (8%)
Query: 1052 DGRASPPPSSIAPPSSPAVDLVTK-TMPSVDGRASPPP--PPVLPPSSRT 1098
PPPS A P V P A P P P LPP
Sbjct: 59 AVWVLPPPSEPAAPPPDPEPPVPGPAGPPSP-LAPPAPARKPPLPPPRPQ 107
Score = 30.0 bits (68), Expect = 2.2
Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 1055 ASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSSRTMEMDVGVPQHPAKEKP 1114
PP PP AV +P A+PPP P P P PA+ KP
Sbjct: 45 DPRPPVVDTPPPVSAV----WVLPPPSEPAAPPPDPEPPVPGPAGPPSPLAPPAPAR-KP 99
Query: 1115 P 1115
P
Sbjct: 100 P 100
Score = 28.5 bits (64), Expect = 9.0
Identities = 18/66 (27%), Positives = 18/66 (27%), Gaps = 6/66 (9%)
Query: 1056 SPPPS---SIAPPSSPAVDLVTKTMPSVDGRASPPPPP---VLPPSSRTMEMDVGVPQHP 1109
SPP S PP V T P V PPP PP P P
Sbjct: 30 SPPESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSP 89
Query: 1110 AKEKPP 1115
P
Sbjct: 90 LAPPAP 95
>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator. In
eukaryotes, this family of proteins induces mitochondrial
fission.
Length = 248
Score = 33.2 bits (76), Expect = 0.64
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 1056 SPPPSSIAPPSSPAVDLVTKTM-PSVDGRASPPPPPVLPPSS 1096
S+ S+ + + T P ++ PPPPP PP S
Sbjct: 156 LSSDESVPSSSTTSFPISPPTEEPVLEVPPPPPPPPPPPPPS 197
>gnl|CDD|215757 pfam00156, Pribosyltran, Phosphoribosyl transferase domain. This
family includes a range of diverse phosphoribosyl
transferase enzymes. This family includes: Adenine
phosphoribosyltransferase EC:2.4.2.7.
Hypoxanthine-guanine-xanthine phosphoribosyltransferase.
Hypoxanthine phosphoribosyltransferase EC:2.4.2.8.
Ribose-phosphate pyrophosphokinase i EC:2.7.6.1.
Amidophosphoribosyltransferase EC:2.4.2.14. Orotate
phosphoribosyltransferase EC:2.4.2.10. Uracil
phosphoribosyltransferase EC:2.4.2.9. Xanthine-guanine
phosphoribosyltransferase EC:2.4.2.22. In Arabidopsis, At
the very N-terminus of this domain is the P-Loop NTPase
domain.
Length = 123
Score = 31.6 bits (72), Expect = 0.75
Identities = 13/60 (21%), Positives = 24/60 (40%)
Query: 1102 DVGVPQHPAKEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATH 1161
+ + + G+ ++VDD++D + AA E+LK GA + V
Sbjct: 64 SSIKSRGGESVTLLSRLPELLKGKRVLIVDDVLDTGGTLRAAVELLKKAGAKVVGVAVLV 123
Score = 31.2 bits (71), Expect = 1.2
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 837 SYHGDGSKEKPPISVVGDVG----GRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 892
S+ ++++ + G+ ++VDD++D + AA E+LK GA + V
Sbjct: 62 YPSSIKSRGGESVTLLSRLPELLKGKRVLIVDDVLDTGGTLRAAVELLKKAGAKVVGVAV 121
Query: 893 TH 894
Sbjct: 122 LV 123
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421). This
family represents a conserved region approximately 350
residues long within a number of plant proteins of
unknown function.
Length = 357
Score = 33.0 bits (75), Expect = 0.87
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 1058 PPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSSRTMEMDVGVPQHPAKEKPPIS 1117
PPS P P + + SV + +P P PP S+ PQ + PP
Sbjct: 93 PPSHQYPSQLP-----PQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQV 147
Query: 1118 V 1118
Sbjct: 148 P 148
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 33.1 bits (76), Expect = 1.00
Identities = 11/68 (16%), Positives = 16/68 (23%), Gaps = 3/68 (4%)
Query: 1054 RASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPP---SSRTMEMDVGVPQHPA 1110
R + AP + A P+ A PP PP ++ P
Sbjct: 383 RPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAP 442
Query: 1111 KEKPPISV 1118
Sbjct: 443 AAVALAPA 450
Score = 30.8 bits (70), Expect = 5.3
Identities = 13/61 (21%), Positives = 21/61 (34%)
Query: 1055 ASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSSRTMEMDVGVPQHPAKEKP 1114
A P + AP ++PA + + P P + T+ + V V PA
Sbjct: 416 APPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASA 475
Query: 1115 P 1115
Sbjct: 476 A 476
Score = 30.5 bits (69), Expect = 7.5
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 1054 RASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSSR 1097
+ P+ A + V + + P ++ P P P ++R
Sbjct: 444 AVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAAR 487
Score = 30.1 bits (68), Expect = 9.2
Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 3/100 (3%)
Query: 1048 FRNVDGRASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSSRTMEMDVGVPQ 1107
F+ + P+ P+ P + A+ P P P ++ +
Sbjct: 364 FKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQ--AAAAPAPAAAPAAAASAPAAPPAAA 421
Query: 1108 HPAKEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVL 1147
PA P + A + AA E +
Sbjct: 422 PPAPVAAPAAAAPAAAPAAAPAAVAL-APAPPAQAAPETV 460
>gnl|CDD|224837 COG1926, COG1926, Predicted phosphoribosyltransferases [General
function prediction only].
Length = 220
Score = 32.7 bits (75), Expect = 1.0
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 1111 KEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPL 1170
+P + GR I+VDD + + AA L+ +G +I + + DA
Sbjct: 115 GGRPVP----SLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVP--VAPEDAAA 168
Query: 1171 LIEESPIDEVVVTNT 1185
+ ES DEVV
Sbjct: 169 EL-ESEADEVVCLYM 182
Score = 30.0 bits (68), Expect = 5.8
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 844 KEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 892
+P + GR I+VDD + + AA L+ +G +I +
Sbjct: 115 GGRPVP----SLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAV 159
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 33.0 bits (75), Expect = 1.5
Identities = 18/72 (25%), Positives = 22/72 (30%)
Query: 1057 PPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSSRTMEMDVGVPQHPAKEKPPI 1116
P P +P P PPPPP P D P+ P
Sbjct: 2903 DQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQP 2962
Query: 1117 SVVGDVGGRVAI 1128
+ V GRVA+
Sbjct: 2963 WLGALVPGRVAV 2974
Score = 32.2 bits (73), Expect = 2.3
Identities = 16/68 (23%), Positives = 20/68 (29%), Gaps = 6/68 (8%)
Query: 1054 RASPPPSSIAPPSSPAVDLV-TKTMPSVDGRASPPPP--PVLPPSSRTMEMDVG---VPQ 1107
PPP + P V P+ +ASP P P P G +
Sbjct: 2700 DPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPAR 2759
Query: 1108 HPAKEKPP 1115
P PP
Sbjct: 2760 PPTTAGPP 2767
Score = 31.4 bits (71), Expect = 4.4
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 1054 RASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSSRTMEMDVGVPQHPA 1110
R + +PP P T+ S+ A PPPPP P + P P
Sbjct: 2669 RLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPP-TPEPAPHALVSATPLPPG 2724
Score = 31.1 bits (70), Expect = 4.9
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 1053 GRASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSSRTMEMDVGVPQHPAKE 1112
+ P++ APP+ PA P R + PP PP+ P
Sbjct: 2730 QASPALPAAPAPPAVPA----GPATPGGPARPARPPTTAGPPAPAPPAAPAAGPP-RRLT 2784
Query: 1113 KPPIS 1117
+P ++
Sbjct: 2785 RPAVA 2789
Score = 31.1 bits (70), Expect = 5.0
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 11/67 (16%)
Query: 1056 SPPPSSIAPP-------SSPAVDLVTKTMPSVDGRASPPPPPVLPPSSRTMEMDVGVPQH 1108
SP AP + PAV T++ + PP P PP + P
Sbjct: 2870 SPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQ----PPP 2925
Query: 1109 PAKEKPP 1115
P + +PP
Sbjct: 2926 PPQPQPP 2932
Score = 31.1 bits (70), Expect = 5.5
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 1053 GRASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPP-----PPPVLPPSSRTMEMD----V 1103
A+ PP + P+ ++ +++PS A PP P LPP++
Sbjct: 2774 APAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTS 2833
Query: 1104 GVPQHPAKEKPPISVVGDVGGRVA 1127
P P P +GG VA
Sbjct: 2834 AQPTAPPPPPGPPPPSLPLGGSVA 2857
Score = 30.7 bits (69), Expect = 6.8
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 1053 GRASPPPSSIAPPSSPAVDLVTK--TMPSVDGRASPPPPPVLPPSSRTMEMDVGVPQHPA 1110
+ P + A P+ P V + + S + A PP P PP + PQ P
Sbjct: 2866 PPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPP 2925
Query: 1111 KEKP 1114
+P
Sbjct: 2926 PPQP 2929
Score = 30.3 bits (68), Expect = 8.3
Identities = 19/87 (21%), Positives = 25/87 (28%), Gaps = 22/87 (25%)
Query: 1053 GRASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPP-------------------PPPVLP 1093
G P P + PS A ++ G P PPP LP
Sbjct: 2500 GGGPPDPDAPPAPSRLAPAILPDEPV---GEPVHPRMLTWIRGLEELASDDAGDPPPPLP 2556
Query: 1094 PSSRTMEMDVGVPQHPAKEKPPISVVG 1120
P++ D VP +P V
Sbjct: 2557 PAAPPAAPDRSVPPPRPAPRPSEPAVT 2583
Score = 30.3 bits (68), Expect = 9.9
Identities = 17/76 (22%), Positives = 19/76 (25%), Gaps = 16/76 (21%)
Query: 1051 VDGRASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSSRTMEMDVGVPQHPA 1110
VD R P + P P P PP PPS + P
Sbjct: 2602 VDDRGDPRGPAPPSPLPPD--------------THAPDPP--PPSPSPAANEPDPHPPPT 2645
Query: 1111 KEKPPISVVGDVGGRV 1126
P GRV
Sbjct: 2646 VPPPERPRDDPAPGRV 2661
>gnl|CDD|193547 cd05672, M20_ACY1L2_like, M20 Peptidase Aminoacylase 1-like protein
2-like, amidohydrolase subfamily. Peptidase M20 family,
Aminoacylase 1-like protein 2 (ACY1L2;
amidohydrolase)-like subfamily. This group contains many
uncharacterized proteins predicted as amidohydrolases,
including gene products of abgA and abgB that catalyze
the cleavage of p-aminobenzoyl-glutamate, a folate
catabolite in Escherichia coli , to p-aminobenzoate and
glutamate. p-Aminobenzoyl-glutamate utilization is
catalyzed by the abg region gene product, AbgT.
Aminoacylase 1 (ACY1) proteins are a class of zinc
binding homodimeric enzymes involved in hydrolysis of
N-acetylated proteins. N-terminal acetylation of
proteins is a widespread and highly conserved process
that is involved in the protection and stability of
proteins. Several types of aminoacylases can be
distinguished on the basis of substrate specificity.
ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino
acids (except L-aspartate), especially
N-acetyl-methionine and acetyl-glutamate into L-amino
acids and an acyl group. However, ACY1 can also catalyze
the reverse reaction, the synthesis of acetylated amino
acids. ACY1 may also play a role in xenobiotic
bioactivation as well as the inter-organ processing of
amino acid-conjugated xenobiotic derivatives
(S-substituted-N-acetyl-L-cysteine).
Length = 358
Score = 32.1 bits (74), Expect = 1.7
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 744 ESESDEYEVDLTRYIRENPELYYKEY--AELYVNTLK 778
+S ++E +L+ I NPEL ++EY ++L + L+
Sbjct: 2 DSIAEEL-RELSDDIHANPELGFEEYKASKLLTDLLE 37
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional.
Length = 141
Score = 30.6 bits (69), Expect = 2.2
Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 14/87 (16%)
Query: 1035 IRR-MHNKESMSY------LFRNVDGRASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPP 1087
IRR +HN+ +S + + A P P + SPA + T S P
Sbjct: 59 IRRQLHNEHILSMEQEARKILAPLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAP 118
Query: 1088 PPPVLPPSSRTMEMDVGVPQHPAKEKP 1114
V P++ P + P
Sbjct: 119 AAAVPAPAAAP-------PPSDPPQPP 138
>gnl|CDD|193508 cd03887, M20_Acy1L2, M20 Peptidase Aminoacylase 1-like protein 2,
amidohydrolase family. Peptidase M20 family,
Aminoacylase 1-like protein 2 (ACY1L2; amidohydrolase)
subfamily. This group contains many uncharacterized
proteins predicted as amidohydrolases, including gene
products of abgA and abgB that catalyze the cleavage of
p-aminobenzoyl-glutamate, a folate catabolite in
Escherichia coli, to p-aminobenzoate and glutamate.
p-Aminobenzoyl-glutamate utilization is catalyzed by the
abg region gene product, AbgT. Aminoacylase 1 (ACY1)
proteins are a class of zinc binding homodimeric enzymes
involved in hydrolysis of N-acetylated proteins.
N-terminal acetylation of proteins is a widespread and
highly conserved process that is involved in the
protection and stability of proteins. Several types of
aminoacylases can be distinguished on the basis of
substrate specificity. ACY1 breaks down cytosolic
aliphatic N-acyl-alpha-amino acids (except L-aspartate),
especially N-acetyl-methionine and acetyl-glutamate into
L-amino acids and an acyl group. However, ACY1 can also
catalyze the reverse reaction, the synthesis of
acetylated amino acids. ACY1 may also play a role in
xenobiotic bioactivation as well as the inter-organ
processing of amino acid-conjugated xenobiotic
derivatives (S-substituted-N-acetyl-L-cysteine).
Length = 358
Score = 31.7 bits (73), Expect = 2.4
Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 744 ESESDEYEVDLTRYIRENPELYYKEY--AELYVNTLK 778
+ ++E ++L+ I ENPEL ++E+ ++L + L+
Sbjct: 1 DENAEEL-IELSDDIWENPELGFEEFKSSKLLADFLE 36
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional.
Length = 991
Score = 32.0 bits (72), Expect = 2.9
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 1053 GRASPPPSSIAPPSSPAVDLVTKTMPS-VDGRASPPPPPVLPPSSRTMEMDVGVPQHPAK 1111
GRA PP ++ PA P+ G +P PPP PP+ + PQ P +
Sbjct: 742 GRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQ 801
Query: 1112 EKP 1114
P
Sbjct: 802 AGP 804
>gnl|CDD|181675 PRK09162, PRK09162, hypoxanthine-guanine phosphoribosyltransferase;
Provisional.
Length = 181
Score = 30.6 bits (70), Expect = 3.6
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 844 KEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIY--VLA 892
K KP S+ G R ++VDD++D+ H+ A + + GA ++Y VL
Sbjct: 88 KVKPRESLKG----RTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSAVLV 134
Score = 30.6 bits (70), Expect = 3.6
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 1111 KEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIY--VLA 1159
K KP S+ G R ++VDD++D+ H+ A + + GA ++Y VL
Sbjct: 88 KVKPRESLKG----RTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSAVLV 134
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 31.4 bits (71), Expect = 3.7
Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Query: 1053 GRASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSSRTMEMDVGVP--QHPA 1110
G A P ++ AP + PA + A P P P ++ P + PA
Sbjct: 370 GGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPA 429
Query: 1111 KEKPPISVVGDVGGRVA 1127
E + G
Sbjct: 430 PEALAAARQASARGPGG 446
Score = 29.8 bits (67), Expect = 9.7
Identities = 11/56 (19%), Positives = 19/56 (33%)
Query: 1055 ASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSSRTMEMDVGVPQHPA 1110
+P AP ++PA + + + R SP P + + G P
Sbjct: 397 PAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAP 452
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 31.3 bits (71), Expect = 3.8
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 1055 ASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSS 1096
S P + PSSP + T P ASP PP P S
Sbjct: 176 LSSPEETARAPSSPPAEPPPSTPP---AAASPRPPRRSSPIS 214
>gnl|CDD|233733 TIGR02117, chp_urease_rgn, conserved hypothetical protein. This
conserved hypothetical protein of unknown function is
found in several Proteobacteria. Its function is unknown
and its genome context is not well-conserved. It is
found amid urease genes in at least one species
[Hypothetical proteins, Conserved].
Length = 208
Score = 30.6 bits (69), Expect = 4.0
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 21/86 (24%)
Query: 201 SNLIPVDVLPERSNNESTIRDLLVST---------------KEANMNMLRVWGGGVYMSD 245
+++ VD PER +S ++ LLVS ++A ++ + GG SD
Sbjct: 105 MSVLHVDGQPERYEAQSEVKRLLVSENQYNRLMDFISASFVRDAEGRVIPLPGGIYGDSD 164
Query: 246 YFYETCDELGILIWQDMMFACNNYPA 271
FY L CN + A
Sbjct: 165 AFYAANGRYNAL------NTCNTWTA 184
>gnl|CDD|223707 COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase
[Nucleotide transport and metabolism].
Length = 178
Score = 30.2 bits (69), Expect = 4.0
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 837 SYH-GDGSKEKPPIS--VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGA 885
SY G S + I + D+ GR ++V+D++D + ++LK+RGA
Sbjct: 70 SYGGGTSSSGEVKILKDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLKERGA 121
Score = 29.4 bits (67), Expect = 7.6
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 1121 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGA 1152
D+ GR ++V+D++D + ++LK+RGA
Sbjct: 90 DIKGRDVLIVEDIIDSGLTLSKVRDLLKERGA 121
>gnl|CDD|133038 cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in
exopolysaccharide amylovora biosynthesis. AmsE is a
glycosyltransferase involved in exopolysaccharide
amylovora biosynthesis in Erwinia amylovora. Amylovara
is one of the three exopolysaccharide produced by E.
amylovora. Amylovara-deficient mutants are
non-pathogenic. It is a subfamily of Glycosyltransferase
Family GT2, which includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds.
Length = 201
Score = 30.4 bits (69), Expect = 4.2
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 752 VDLTRYIRENPELYYKEYAELYVNTLKP--IVLQYD 785
V ++ YI+E PE + + TL P +VL D
Sbjct: 2 VLMSVYIKEKPEFLREALESILKQTLPPDEVVLVKD 37
>gnl|CDD|169719 PRK09212, PRK09212, pyruvate dehydrogenase subunit beta; Validated.
Length = 327
Score = 30.8 bits (70), Expect = 4.7
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 1129 MVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDE 1179
M ++M D F+ EV + +GAYK+ T GLL P + ++PI E
Sbjct: 14 MQEEMERDPKVFLMGEEVGEYQGAYKV----TQGLLEQFGPKRVIDTPITE 60
>gnl|CDD|216368 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal.
Length = 313
Score = 30.6 bits (69), Expect = 4.8
Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 1065 PSSPAVDLVTKTM-PSVDGRASPPPPPVLPPSSRTMEMDVGVPQHPAKEKPPISVV 1119
P + S ++PPPPP PP S + V + K V
Sbjct: 211 KKGPVAAAKSALPAVSSSAPSAPPPPPPPPPPSVPTISN-SVESASSDSKGGRGAV 265
>gnl|CDD|176673 cd07250, HPPD_C_like, C-terminal domain of 4-hydroxyphenylpyruvate
dioxygenase (HppD) and hydroxymandelate Synthase (HmaS).
HppD and HmaS are non-heme iron-dependent dioxygenases,
which modify a common substrate, 4-hydroxyphenylpyruvate
(HPP), but yield different products. HPPD catalyzes the
second reaction in tyrosine catabolism, the conversion
of 4-hydroxyphenylpyruvate to homogentisate
(2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP
to 4-hydroxymandelate, a committed step in the formation
of hydroxyphenylglycerine, a structural component of
nonproteinogenic macrocyclic peptide antibiotics, such
as vancomycin. If the emphasis is on catalytic
chemistry, HPPD and HmaS are classified as members of a
large family of alpha-keto acid dependent mononuclear
non-heme iron oxygenases most of which require Fe(II),
molecular oxygen, and an alpha-keto acid (typically
alpha-ketoglutarate) to either oxygenate or oxidize a
third substrate. Both enzymes are exceptions in that
they require two, instead of three, substrates, do not
use alpha-ketoglutarate, and incorporate both atoms of
dioxygen into the aromatic product. Both HPPD and HmaS
exhibit duplicate beta barrel topology in their N- and
C-terminal domains which share sequence similarity,
suggestive of a gene duplication. Each protein has only
one catalytic site located in at the C-terminal domain.
This HPPD_C_like domain represents the C-terminal
domain.
Length = 191
Score = 30.2 bits (69), Expect = 5.0
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 888 IYVLATHGLLFDYDGNWKMLHYFARKFF 915
+ L G+L D D +L F + F
Sbjct: 132 LDTLRELGILVDRDDGGYLLQIFTKPVF 159
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.
Length = 463
Score = 30.9 bits (69), Expect = 5.3
Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 15/114 (13%)
Query: 1058 PPSSIAPPSSPAVDLV---TKTMPSVDGRASPPPPPVLPPSSRTMEMDVGVPQHPAKEKP 1114
P ++ PS PA D ++ P + +P PP PP E PQ P KE+
Sbjct: 182 PETTDPKPSPPAEDKQKPKVESAPVAEKPKAPSSPP--PPKQSAKE-----PQLPPKERE 234
Query: 1115 PISVVGDVGGRVAIMVDDMVDDVHSFVAAAEV-----LKDRGAYKIYVLATHGL 1163
+ + RVA + D + EV +K R YK HG+
Sbjct: 235 RRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGV 288
>gnl|CDD|147759 pfam05782, ECM1, Extracellular matrix protein 1 (ECM1). This family
consists of several eukaryotic extracellular matrix
protein 1 (ECM1) sequences. ECM1 has been shown to
regulate endochondral bone formation, stimulate the
proliferation of endothelial cells and induce
angiogenesis. Mutations in the ECM1 gene can cause lipoid
proteinosis, a disorder which causes generalised
thickening of skin, mucosae and certain viscera.
Classical features include beaded eyelid papules and
laryngeal infiltration leading to hoarseness.
Length = 419
Score = 30.4 bits (68), Expect = 6.3
Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 6/86 (6%)
Query: 1028 SILLSEAIRRMHNKESMSYLFRNVDGRASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPP 1087
S LS + H S PPPS P D T P+VD
Sbjct: 52 SPPLSRRLPVDHPVTSQHDPPFEGQSEVQPPPSPEDIPVYEE-DWPTFLNPNVDKAGPAV 110
Query: 1088 PPPVLPPSSRTMEMDVGVPQHPAKEK 1113
P +P ++ ++ PQ P ++K
Sbjct: 111 PQEAIP-----LQKELPPPQVPIEQK 131
>gnl|CDD|227610 COG5290, COG5290, IkappaB kinase complex, IKAP component
[Transcription].
Length = 1243
Score = 30.7 bits (69), Expect = 6.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 920 ISPVFNVSSRTLEVVLLNDPNRPLHNV 946
+ +F+V R LE V DPNRP+
Sbjct: 1207 VDSIFSVERRLLERVNGEDPNRPVPEK 1233
>gnl|CDD|193549 cd05674, M20_yscS, M20 Peptidase, carboxypeptidase yscS. Peptidase
M20 family, yscS (GlyX-carboxypeptidase, CPS1,
carboxypeptidase S, carboxypeptidase a, carboxypeptidase
yscS, glycine carboxypeptidase)-like subfamily. This
group mostly contains proteins that have been
uncharacterized to date, but also includes vacuolar
proteins involved in nitrogen metabolism which are
essential for use of certain peptides that are sole
nitrogen sources. YscS releases a C-terminal amino acid
from a peptide that has glycine as the penultimate
residue. It is synthesized as one polypeptide chain
precursor which yields two active precursor molecules
after carbohydrate modification in the secretory pathway.
The proteolytically unprocessed forms are associated with
the membrane, whereas the mature forms of the enzyme are
soluble. Enzymes in this subfamily may also cleave
intracellularly generated peptides in order to recycle
amino acids for protein synthesis.
Length = 441
Score = 30.2 bits (69), Expect = 7.0
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 1050 NVDGRASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLP 1093
+ S PS ++P PA +L+ T+ V P V P
Sbjct: 343 ELLLSLSSEPSPVSPTDGPAWELLAGTIRQVYF----PDVVVAP 382
>gnl|CDD|177328 PHA01929, PHA01929, putative scaffolding protein.
Length = 306
Score = 30.0 bits (67), Expect = 7.3
Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 21/105 (20%)
Query: 1055 ASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSSRTMEMDVGVPQHPAKEKP 1114
A P P+S V + P+ A+PP P + ++V P PA P
Sbjct: 51 AIPTQQPQPVPTSAMTPHVVQQAPAQPAPAAPPAAGAALPEA----LEVPPP--PAFT-P 103
Query: 1115 PISVVGDVGGRV--------------AIMVDDMVDDVHSFVAAAE 1145
+VG + G + A D +D V +F AAE
Sbjct: 104 NGEIVGTLAGNLEGDPQLAPSVSYLEAFSGLDKLDTVRAFGKAAE 148
>gnl|CDD|144451 pfam00859, CTF_NFI, CTF/NF-I family transcription modulation region.
Length = 295
Score = 30.0 bits (67), Expect = 7.4
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 1056 SPPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSSRTMEMDVGV-PQHPA 1110
PPP P P D T + G SP P PS+ VG+ P+ PA
Sbjct: 229 PPPPPMARPVPLPMPDTKPPTTSTEGGATSPTSPTYSTPSTSPANRFVGLGPRDPA 284
>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed.
Length = 291
Score = 30.0 bits (67), Expect = 8.0
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 1051 VDGRASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSSRTMEMDVGVPQHPA 1110
V+ S PPS+ + T V+ P P S++ V PQ P
Sbjct: 38 VEAPQSTPPSTKVEAPQSKPNATTPPSTKVEA-PQQTPNATTPSSTK-----VETPQSPT 91
Query: 1111 KEKPPISV 1118
++ P +
Sbjct: 92 TKQVPTEI 99
>gnl|CDD|240085 cd04734, OYE_like_3_FMN, Old yellow enzyme (OYE)-related FMN
binding domain, group 3. Each monomer of OYE contains
FMN as a non-covalently bound cofactor, uses NADPH as a
reducing agent with oxygens, quinones, and
alpha,beta-unsaturated aldehydes and ketones, and can
act as electron acceptors in the catalytic reaction.
Other members of OYE family include trimethylamine
dehydrogenase, 2,4-dienoyl-CoA reductase, enoate
reductase, pentaerythriol tetranitrate reductase,
xenobiotic reductase, and morphinone reductase. One
member of this subgroup, the Sinorhizobium meliloti
stachydrine utilization protein stcD, has been idenified
as a putative N-methylproline demethylase.
Length = 343
Score = 29.9 bits (68), Expect = 8.7
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 20/84 (23%)
Query: 818 GDSGWTGVSSPSPCPAPLLSYHGDGSKEKPPISVVGDVGGRVAIMVDDMVDD-VHSFVAA 876
GD W +PS P P H K M ++ +++ + +F A
Sbjct: 106 GDGSWLPPLAPSAVPEP---RHRAVPKA----------------MEEEDIEEIIAAFADA 146
Query: 877 AEVLKDRGAYKIYVLATHGLLFDY 900
A + G + + A HG L D
Sbjct: 147 ARRCQAGGLDGVELQAAHGHLIDQ 170
>gnl|CDD|184352 PRK13829, rimM, 16S rRNA-processing protein RimM; Provisional.
Length = 162
Score = 28.9 bits (65), Expect = 8.8
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 181 LEKGRYFYFEVNKVPIYSKGSNLIPV-DVLPERSNNESTIRDLLV 224
LE+G Y+Y E+ +P+Y G L V DV ++ +DLLV
Sbjct: 84 LEEGSYYYHELRGLPVYVDGEPLGEVVDVE------DAGAQDLLV 122
>gnl|CDD|140276 PTZ00249, PTZ00249, variable surface protein Vir28; Provisional.
Length = 516
Score = 30.0 bits (67), Expect = 8.9
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 18/96 (18%)
Query: 1037 RMHNKESMSYLFRNVDGRASPPP-SSIAPPSS---PAVDL-----VTKTMPSVDGRA--- 1084
R K ++ R + G A PP S + P + P V+ V+ + P GR
Sbjct: 219 REEQKAVTAHAHRRISGEARPPKHISFSSPHAHGRPPVETRPPNPVSVSSPQAHGRHPGE 278
Query: 1085 SPPPPPVLPPSSRTMEMDVGVPQHPAKEKPPISVVG 1120
+ PP V PSS+ + ++P + P SV G
Sbjct: 279 THTPPLVTVPSSKAHD------RNPVQTPTPTSVSG 308
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 30.3 bits (69), Expect = 9.0
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 1054 RASPPPSSIAPPSSPAVDLVTKTMPS-VDGRASPPPPPVLPPSSRTMEMDVGVPQHPAKE 1112
A+P + A P+ PA D A+ PP S+ + D VP P +
Sbjct: 687 PAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPD 746
Query: 1113 KPP 1115
PP
Sbjct: 747 DPP 749
>gnl|CDD|165528 PHA03270, PHA03270, envelope glycoprotein C; Provisional.
Length = 466
Score = 29.9 bits (67), Expect = 9.0
Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 7/75 (9%)
Query: 1055 ASPPPSSIAPPSSPAVDLVTKTMP-SVDGRASPPPPPVLPPSSRTMEMDVGVPQHPAKEK 1113
A S SP +T P G+ +P P P S P P + K
Sbjct: 29 AVSNASEAPTSGSPGSAEGPRTTPTPTRGKGTPTGPASPPKSGPP-----KSPPAPFRCK 83
Query: 1114 PPISVVGDVGGRVAI 1128
P V+ G RV I
Sbjct: 84 RP-DVLARYGSRVQI 97
>gnl|CDD|221526 pfam12316, Dsh_C, Segment polarity protein dishevelled (Dsh) C
terminal. This domain family is found in eukaryotes, and
is typically between 177 and 207 amino acids in length.
The family is found in association with pfam00778,
pfam02377, pfam00610, pfam00595. The segment polarity
gene dishevelled (dsh) is required for pattern formation
of the embryonic segments. It is involved in the
determination of body organisation through the Wingless
pathway (analogous to the Wnt-1 pathway).
Length = 202
Score = 29.5 bits (66), Expect = 9.4
Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 2/76 (2%)
Query: 1047 LFRNVDGRASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSSRTMEMDVGVP 1106
R GR +P S PPS +V S +P PP P M+ P
Sbjct: 113 GSRRSGGRRAPSERSGPPPSEGSVRSSLSHPSSHSSYGAPGVPPPYNPPMLMMKPPPPSP 172
Query: 1107 QHPAKEKPPISVVGDV 1122
P PP+ + V
Sbjct: 173 GPPG--APPVRELASV 186
>gnl|CDD|224847 COG1936, COG1936, Predicted nucleotide kinase (related to CMP and
AMP kinases) [Nucleotide transport and metabolism].
Length = 180
Score = 29.2 bits (66), Expect = 9.9
Identities = 37/155 (23%), Positives = 53/155 (34%), Gaps = 43/155 (27%)
Query: 639 VIVAKNPGAAKKATSYAERLR-LGIAVIHG----------EQKESESDEYEVDLTGRPDK 687
+ + PG K T+ + LR LG VI + + VD+ DK
Sbjct: 3 IAITGTPGVGK--TTVCKLLRELGYKVIELNELAKENGLYTEYDELRKSVIVDV----DK 56
Query: 688 V--YLSGL---PDRVLISHVSQIPDYKNAVIV-AKNPGAAK---KATSY----------A 728
+ L L ++ SH+S + + V+V +P K Y A
Sbjct: 57 LRKRLEELLREGSGIVDSHLSHLLPDCDLVVVLRADPEVLYERLKGRGYSEEKILENVEA 116
Query: 729 ERLRLGIAVIHGEQKESESDEYEVDLTRYIRENPE 763
E L VI E E EVD T +PE
Sbjct: 117 EIL----DVILIEAVERFEAVIEVDTT---NRSPE 144
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.402
Gapped
Lambda K H
0.267 0.0701 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 63,473,037
Number of extensions: 6386342
Number of successful extensions: 6513
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6335
Number of HSP's successfully gapped: 166
Length of query: 1231
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1123
Effective length of database: 6,147,370
Effective search space: 6903496510
Effective search space used: 6903496510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (28.9 bits)