RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15568
(1231 letters)
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine,
glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis
orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5
c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A*
2vzu_A*
Length = 1032
Score = 347 bits (890), Expect = e-102
Identities = 101/632 (15%), Positives = 188/632 (29%), Gaps = 156/632 (24%)
Query: 3 RKMQASFAW-DWGPAMPSVGICDIYHIIIENESKQNLELGEKSVELEGYHVARIRDILTD 61
S W DW P I + V + +R
Sbjct: 193 PNRDLSMGWIDWAQTPPDQN-MGIV----------------RDVLVRRSGAVALRSAHVI 235
Query: 62 ITYHEDLKSWHLSVRVILEAGLSQAVVKAKLTAELAVGKKPLRVDSLVNAEPSHGEIEVV 121
+ L L+V+ + + AV + T V KP+ + A E + V
Sbjct: 236 QKLNSALDHADLTVKADVRNDSANAV---QTTVAGTVAGKPISQTVSLAA----KERKTV 288
Query: 122 STLMVLASEVELWWPNGYGEQPLYNLQITLAS-GVEMSTKSIKIGFRTVELIQDHVDPNH 180
+ +V +WWP G G Q Y+L +T + G K G R V+
Sbjct: 289 TFPLVGLDRPNVWWPAGMGGQHRYDLDLTASVGGTPSDAAKSKFGVRDVKATL------- 341
Query: 181 LEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNESTIRDLLVSTKEANMNMLRVWGGG 240
+ VN P+ +G P D+ NE+ D L +N +R+ G
Sbjct: 342 -NSSGGRQYSVNGKPLLIRGGGYTP-DLFLRW--NETAAADKLKYVLNLGLNTVRLEGH- 396
Query: 241 VYMSDYFYETCDELGILI---------WQDMMFAC-NNYPATPTFLQSVRSEISQTVRRV 290
D F++ D+LG+L W+ + P + ++ + R+
Sbjct: 397 -IEPDEFFDIADDLGVLTMPGWECCDKWEGQVNGEEKGEPWVESDYPIAKASMFSEAERL 455
Query: 291 QHHPCIAVWAGNNEME-------------------------------------------- 306
+ HP + + ++
Sbjct: 456 RDHPSVISFHIGSDFAPDRRIEQGYLDAMKAADFLLPVIPAASARPSPITGASGMKMNGP 515
Query: 307 --AHNYDYYQNLWDPSTAPKSRFCSEFGIQ-SLPQLSTFQKVATEADLASWRTPFFDSRQ 363
Y+ + F SE +P + T +++ + ++L ++Q
Sbjct: 516 YDYVPPVYWYDKSQKDRGGAWSFNSETSAGVDIPTMDTLKRMMSASEL-DTMWKNPSAKQ 574
Query: 364 HLAGGTGILESSVGHQFEIGNLTLEYFAYLSQCMAAIHALHGRYATDQAGAIKTITEQMR 423
+ H+ ++D G +K + +
Sbjct: 575 Y-------------HR---------------------------SSSDTFGNLKLFGDALT 594
Query: 424 RDKGVLR--EDGSGHNMGALYWQLNDIYQAGAIKTITEQMRRDKGVLREDGSGHNMGALY 481
+ G D + + + Q ++ E R+ D + + G +Y
Sbjct: 595 KRYGASANLND---------FVRKAQLSQYENVRAEFESHSRNYT----DSTNPSTGLIY 641
Query: 482 WQLNDVWQAPTWSSIDYDGNWKMLHYFARKFFAPVLISPVLNVSSRTLEVVLLNDPNRPL 541
W LN W + W D + +Y A+K P+ I + VV++N + +
Sbjct: 642 WMLNSPWTSLHWQLFDAYMDQNGAYYGAKKANEPLHIQYSHD----NRSVVVINQTSNAV 697
Query: 542 HNVTIVTESYAWNDTRPFRSVKTPLVTVVSGK 573
+T T+ Y + T + + KT L G
Sbjct: 698 SGLTATTKLYNLDGTEKYSNTKTGLSVGALGA 729
Score = 58.1 bits (140), Expect = 2e-08
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 892 ATHGLLFDYDGNWKMLHYFARKFFAPVLISPVFNVSSRTLEVVLLNDPNRPLHNVTIVTE 951
+ H LFD + +Y A+K P+ I + VV++N + + +T T+
Sbjct: 650 SLHWQLFDAYMDQNGAYYGAKKANEPLHIQYSHD----NRSVVVINQTSNAVSGLTATTK 705
Query: 952 SYAWNDTRPFRSVKTPLVT 970
Y + T + + KT L
Sbjct: 706 LYNLDGTEKYSNTKTGLSV 724
>2je8_A Beta-mannosidase; glycoside hydrolase, hydrolase; HET: B3P; 1.7A
{Bacteroides thetaiotaomicron} SCOP: b.1.4.1 b.1.4.1
b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2vr4_A* 2vl4_A* 2vmf_A*
2vo5_A* 2vot_A* 2vqt_A* 2vjx_A* 2vqu_A* 2wbk_A*
Length = 848
Score = 319 bits (818), Expect = 1e-93
Identities = 158/596 (26%), Positives = 250/596 (41%), Gaps = 74/596 (12%)
Query: 1 MLRKMQASFAWDWGPAMPSVGICDIYHIIIENESKQNLELGEKSVELEGYHVARIRDILT 60
RK S+ WDWG M + G+ + V L Y +A I D
Sbjct: 165 FSRKAPYSYGWDWGIRMVTSGV-------------------WRPVTLRFYDIATISDY-Y 204
Query: 61 DITYHEDLKSWHLSVRVILEAGLSQAV-VKAKLTAELAVGKKPLRVDSLVNAEPSHGEIE 119
++ LS +I+ + Q + + ++ L G V V +P I
Sbjct: 205 VRQLSLTDENARLSNELIVNQIVPQKIPAEVRVNVSLN-GTTVTEVKQQVTLQPGINHIT 263
Query: 120 VVSTLMVLASEVELWWPNGYGEQPLYNLQITLASGV-EMSTKSIKIGFRTVELIQDHVDP 178
+ + + W PNG+G LY+ +A G ++ +S +IG RT+ ++ +
Sbjct: 264 LPAEVT----NPVRWMPNGWGTPTLYDFSAQIACGDRIVAEQSHRIGLRTIRVVNEK--- 316
Query: 179 NHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNESTIRDLLVSTKEANMNMLRVWG 238
+ G FYFEVN +P+++KG+N IP D L E + L KEANMNM+R+WG
Sbjct: 317 --DKDGESFYFEVNGIPMFAKGANYIPQDALLPNVTTE-RYQTLFRDMKEANMNMVRIWG 373
Query: 239 GGVYMSDYFYETCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAV 298
GG Y ++ FY+ DE GIL+WQD MFAC YP+ PTFL+ V +E +RR+++H +A+
Sbjct: 374 GGTYENNLFYDLADENGILVWQDFMFACTPYPSDPTFLKRVEAEAVYNIRRLRNHASLAM 433
Query: 299 WAGNNEMEA------HNYDYYQNLWDPSTAPKSRFCSEFGIQSLPQLS------------ 340
W GNNE+ + ++ + E ++ +
Sbjct: 434 WCGNNEILEALKYWGFEKKFTPEVYQGLMHGYDKLFRELLPSTVKEFDSDRFYVHSSPYL 493
Query: 341 ---TFQKVATEADLASWRTPFF-DSRQHLAGGTGILESSVGHQFEIGNLTLEYFAYLSQC 396
+ D +W + + L S G Q T+ FA
Sbjct: 494 ANWGRPESWGTGDSHNWGVWYGKKPFESLDTDLPRFMSEFGFQSFPEMKTIAAFAAPED- 552
Query: 397 MAAIHALHGRYATDQAGAIKTITEQMRRDKGVLREDGSGHNMGALYWQLNDIYQAGAIKT 456
I + + I M RD + E L Q ++
Sbjct: 553 -YQIESEVMNAHQKSSIGNSLIRTYMERDYII-PESFEDFVYVGLVLQ------GQGMRH 604
Query: 457 ITEQMRRDKGVLREDGSGHNMGALYWQLNDVWQAPTWSSIDYDGNWKMLHYFARKFFAPV 516
E RR++ + MG LYWQLND W +WSSIDY GNWK LHY A++ FAPV
Sbjct: 605 GLEAHRRNR--------PYCMGTLYWQLNDSWPVVSWSSIDYYGNWKALHYQAKRAFAPV 656
Query: 517 LISPVLNVSSRTLEVVLLNDPNRPLHNVTIVTESYAWNDTRPFRSVKTPLVTVVSG 572
LI+P+ + +L V L++D + +T+ + ++ + ++ + V +
Sbjct: 657 LINPIQQ--NDSLSVYLISDRLDTMEQMTLEMKVVDFDGKTLGKKIQVHSLEVPAN 710
Score = 68.2 bits (166), Expect = 1e-11
Identities = 41/272 (15%), Positives = 86/272 (31%), Gaps = 54/272 (19%)
Query: 755 TRYIRENPELYYKEYAELYVNTLKPIVLQYDPTRPYLTSSPTNGIESEKAKYALADNPYS 814
++ E + Y +L+ L V ++D R Y+ SSP + D+
Sbjct: 451 KKFTPEVYQGLMHGYDKLFRELLPSTVKEFDSDRFYVHSSPYLANWGRPESWGTGDSHNW 510
Query: 815 NI-YGDSGWTGVSSPSPCPAPLLSYHGDGSKEKPPISVVGDVGGRVAIMVDDMVDDVHSF 873
+ YG + + + P + P + + ++ V + H
Sbjct: 511 GVWYGKKPFESLDTDLPRFMSEFGFQSF-----PEMKTIAAFAAPEDYQIESEVMNAHQK 565
Query: 874 VAAAEVLKDRGAYKIYVLATHGLLFDYDGNW----------------------------- 904
+ L + Y++ F Y G
Sbjct: 566 SSIGNSLIRTYMERDYIIPESFEDFVYVGLVLQGQGMRHGLEAHRRNRPYCMGTLYWQLN 625
Query: 905 -----------------KMLHYFARKFFAPVLISPVFNVSSRTLEVVLLNDPNRPLHNVT 947
K LHY A++ FAPVLI+P+ + +L V L++D + +T
Sbjct: 626 DSWPVVSWSSIDYYGNWKALHYQAKRAFAPVLINPIQQ--NDSLSVYLISDRLDTMEQMT 683
Query: 948 IVTESYAWNDTRPFRSVKTPLVTVKLCAAEEI 979
+ + ++ + ++ + V ++ +
Sbjct: 684 LEMKVVDFDGKTLGKKIQVHSLEVPANTSKCV 715
>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2;
phosphorylation, nucleotide biosynthesis, transferase;
2.55A {Homo sapiens} PDB: 2c4k_A*
Length = 379
Score = 253 bits (648), Expect = 3e-75
Identities = 135/273 (49%), Positives = 166/273 (60%), Gaps = 69/273 (25%)
Query: 976 AEEIQGFFDCPVDNLRASPFLLQYIQ-------DSVVVTNTIPHDV----------QKLQ 1018
+EIQGFF+ PVDNLRASPFLLQYIQ ++V+V ++L+
Sbjct: 159 QKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVA---K-SPASAKRAQSFAERLR 214
Query: 1019 CPKIKTVDISILLSEAIRRMHNKESMSYLFRNVDGRASPPPSSIAPPSSPAVDLVTKTMP 1078
I+++ + E+ VDGR SPP
Sbjct: 215 LG------IAVI---------HGEAQDAESDLVDGRHSPPMVR----------------- 242
Query: 1079 SVDGRASPPPPPVLPPSSRTMEMDVGVPQHPAKEKPPISVVGDVGGRVAIMVDDMVDDVH 1138
S + + +P KEKPPI+VVGDVGGR+AI+VDD++DDV
Sbjct: 243 ----------------SVAAIHPSLEIPMLIPKEKPPITVVGDVGGRIAIIVDDIIDDVD 286
Query: 1139 SFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEVVVTNTIPHDVQKLQCPKI 1198
SF+AAAE LK+RGAYKI+V+ATHGLLSSDAP IEES IDEVVVTNTIPH+VQKLQCPKI
Sbjct: 287 SFLAAAETLKERGAYKIFVMATHGLLSSDAPRRIEESAIDEVVVTNTIPHEVQKLQCPKI 346
Query: 1199 KTVDISILLSEAIRRMHNKESMSYLFRNVTLED 1231
KTVDIS++LSEAIRR+HN ESMSYLFRN+ L+D
Sbjct: 347 KTVDISMILSEAIRRIHNGESMSYLFRNIGLDD 379
Score = 170 bits (433), Expect = 2e-46
Identities = 82/103 (79%), Positives = 94/103 (91%)
Query: 573 KMRKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQDSI 632
KMRKRG IVSKLLA MMC +GL H+ITMDLHQKEIQGFF+ PVDNLRASPFLLQYIQ+ I
Sbjct: 128 KMRKRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEI 187
Query: 633 PDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIHGEQKESESD 675
PDY+NAVIVAK+P +AK+A S+AERLRLGIAVIHGE +++ESD
Sbjct: 188 PDYRNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESD 230
Score = 115 bits (291), Expect = 8e-28
Identities = 77/209 (36%), Positives = 101/209 (48%), Gaps = 70/209 (33%)
Query: 690 LSGLPDRVLISHV-SQIPDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIHGEQKESESD 748
L P L+ ++ +IPDY+NAVIVAK+P +AK+A S+AERLRLGIAVIHGE +++ESD
Sbjct: 173 LRASP--FLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESD 230
Query: 749 EYEVDLTRYIRENPELYYKEYAELYVNTLKPIVLQYDPTRPYLTSSPTNGIESEKAKYAL 808
VD + P + S E
Sbjct: 231 --LVDGRH------------------------------SPPMVRSVAAIHPSLEIPMLIP 258
Query: 809 ADNPYSNIYGDSGWTGVSSPSPCPAPLLSYHGDGSKEKPPISVVGDVGGRVAIMVDDMVD 868
+ P + GD VGGR+AI+VDD++D
Sbjct: 259 KEKPPITVVGD-----------------------------------VGGRIAIIVDDIID 283
Query: 869 DVHSFVAAAEVLKDRGAYKIYVLATHGLL 897
DV SF+AAAE LK+RGAYKI+V+ATHGLL
Sbjct: 284 DVDSFLAAAETLKERGAYKIFVMATHGLL 312
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis,
transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A
2h06_A 2h07_A 2h08_A
Length = 326
Score = 155 bits (394), Expect = 9e-42
Identities = 55/112 (49%), Positives = 74/112 (66%)
Query: 1118 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPI 1177
+VGDV RVAI+VDDM D + AA+ L GA ++Y + THG+ S A I +
Sbjct: 207 LVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRINNACF 266
Query: 1178 DEVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLFRNVTL 1229
+ VVVTNTIP + + C KI+ +DIS++L+EAIRR HN ES+SYLF +V L
Sbjct: 267 EAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRRTHNGESVSYLFSHVPL 318
Score = 118 bits (298), Expect = 5e-29
Identities = 46/94 (48%), Positives = 67/94 (71%)
Query: 573 KMRKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQDSI 632
K + R I +KL+A M+ +G HIITMDLH +IQGFFD PVDNL A P +L++I+++I
Sbjct: 100 KDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIRENI 159
Query: 633 PDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIH 666
+++N IV+ + G AK+ TS A+RL + A+IH
Sbjct: 160 SEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIH 193
Score = 80.3 bits (199), Expect = 3e-16
Identities = 30/65 (46%), Positives = 44/65 (67%), Gaps = 6/65 (9%)
Query: 987 VDNLRASPFLLQYIQDSVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSY 1046
+ + + F ++VVVTNTIP + + C KI+ +DIS++L+EAIRR HN ES+SY
Sbjct: 258 ISRINNACF------EAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRRTHNGESVSY 311
Query: 1047 LFRNV 1051
LF +V
Sbjct: 312 LFSHV 316
Score = 69.9 bits (172), Expect = 8e-13
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 851 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLL 897
+VGDV RVAI+VDDM D + AA+ L GA ++Y + THG+
Sbjct: 207 LVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIF 253
Score = 53.0 bits (128), Expect = 3e-07
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 7/38 (18%)
Query: 976 AEEIQGFFDCPVDNLRASPFLLQYIQ-------DSVVV 1006
A +IQGFFD PVDNL A P +L++I+ + +V
Sbjct: 131 ASQIQGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIV 168
Score = 39.9 bits (94), Expect = 0.004
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 690 LSGLPDRVLISHV-SQIPDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIH 739
L P ++ + I +++N IV+ + G AK+ TS A+RL + A+IH
Sbjct: 145 LYAEP--AVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIH 193
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural
genomics center for infectious disease, magnesium, metal
binding; HET: AMP; 2.30A {Burkholderia pseudomallei}
Length = 319
Score = 145 bits (369), Expect = 2e-38
Identities = 45/107 (42%), Positives = 69/107 (64%)
Query: 1118 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPI 1177
++G+V GR +++DDMVD + AA+VLK+RGA +++ ATH +LS A I S +
Sbjct: 210 IIGEVEGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVLSGGAADRIAASAL 269
Query: 1178 DEVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLF 1224
DE+VVT+TIP + L CPKI+ + + LL+E R+ +S+ LF
Sbjct: 270 DELVVTDTIPLSAESLACPKIRALSSAGLLAETFSRIRRGDSVMSLF 316
Score = 103 bits (259), Expect = 4e-24
Identities = 34/87 (39%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 580 IVSKLLAKMMCTSGLKHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQDSIPDYKNAV 639
I +K++A M+ +G++ IITMDLH +IQGFFD PVDN+ A+P LL ++ +Y + +
Sbjct: 112 ISAKVVANMLEIAGVERIITMDLHADQIQGFFDIPVDNIYATPILLGDLRKQ--NYPDLL 169
Query: 640 IVAKNPGAAKKATSYAERLRLGIAVIH 666
+V+ + G +A + A++L +A+I
Sbjct: 170 VVSPDVGGVVRARALAKQLNCDLAIID 196
Score = 72.6 bits (179), Expect = 1e-13
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 987 VDNLRASPFLLQYIQDSVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSY 1046
D + AS D +VVT+TIP + L CPKI+ + + LL+E R+ +S+
Sbjct: 261 ADRIAASAL------DELVVTDTIPLSAESLACPKIRALSSAGLLAETFSRIRRGDSVMS 314
Query: 1047 LF 1048
LF
Sbjct: 315 LF 316
Score = 68.4 bits (168), Expect = 3e-12
Identities = 21/47 (44%), Positives = 34/47 (72%)
Query: 851 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLL 897
++G+V GR +++DDMVD + AA+VLK+RGA +++ ATH +L
Sbjct: 210 IIGEVEGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVL 256
Score = 53.0 bits (128), Expect = 2e-07
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 24/76 (31%)
Query: 953 YAWNDTRPFRSVKTPLVTVKLCA-----------------AEEIQGFFDCPVDNLRASPF 995
YA D RP RS + ++ K+ A A++IQGFFD PVDN+ A+P
Sbjct: 98 YARQDRRP-RSARVA-ISAKVVANMLEIAGVERIITMDLHADQIQGFFDIPVDNIYATPI 155
Query: 996 LLQYIQ-----DSVVV 1006
LL ++ D +VV
Sbjct: 156 LLGDLRKQNYPDLLVV 171
Score = 32.9 bits (76), Expect = 0.63
Identities = 10/50 (20%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 690 LSGLPDRVLISHVSQIPDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIH 739
+ P +L+ + + +Y + ++V+ + G +A + A++L +A+I
Sbjct: 150 IYATP--ILLGDLRKQ-NYPDLLVVSPDVGGVVRARALAKQLNCDLAIID 196
>1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta
structure, domain duplication, phosphoribosyltransferase
type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis}
SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A*
Length = 317
Score = 142 bits (360), Expect = 3e-37
Identities = 42/107 (39%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Query: 1118 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPI 1177
+VG++ G+ AI++DD++D + AA L + GA ++Y TH +LS A I S I
Sbjct: 211 IVGNIEGKTAILIDDIIDTAGTITLAANALVENGAKEVYACCTHPVLSGPAVERINNSTI 270
Query: 1178 DEVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSYLF 1224
E+VVTN+I +K + + K + + LL+EAI R+H ++S+SYLF
Sbjct: 271 KELVVTNSIKLPEEK-KIERFKQLSVGPLLAEAIIRVHEQQSVSYLF 316
Score = 101 bits (255), Expect = 1e-23
Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 2/94 (2%)
Query: 573 KMRKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQDSI 632
K R R I +KL A ++ T+G +I +DLH +IQGFFD P+D+L P L +Y +
Sbjct: 106 KARSREPITAKLFANLLETAGATRVIALDLHAPQIQGFFDIPIDHLMGVPILGEYFEGK- 164
Query: 633 PDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIH 666
+ ++ VIV+ + G +A A+RL+ IA+I
Sbjct: 165 -NLEDIVIVSPDHGGVTRARKLADRLKAPIAIID 197
Score = 70.3 bits (173), Expect = 5e-13
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 851 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLL 897
+VG++ G+ AI++DD++D + AA L + GA ++Y TH +L
Sbjct: 211 IVGNIEGKTAILIDDIIDTAGTITLAANALVENGAKEVYACCTHPVL 257
Score = 66.8 bits (164), Expect = 8e-12
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 987 VDNLRASPFLLQYIQDSVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMHNKESMSY 1046
V+ + S +VVTN+I +K + + K + + LL+EAI R+H ++S+SY
Sbjct: 262 VERINNSTI------KELVVTNSIKLPEEK-KIERFKQLSVGPLLAEAIIRVHEQQSVSY 314
Query: 1047 LF 1048
LF
Sbjct: 315 LF 316
Score = 52.9 bits (128), Expect = 3e-07
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 976 AEEIQGFFDCPVDNLRASPFLLQYIQ-----DSVVV 1006
A +IQGFFD P+D+L P L +Y + D V+V
Sbjct: 137 APQIQGFFDIPIDHLMGVPILGEYFEGKNLEDIVIV 172
Score = 32.1 bits (74), Expect = 1.00
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 690 LSGLPDRVLISHVSQIPDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIH 739
L G+P +L + + ++ VIV+ + G +A A+RL+ IA+I
Sbjct: 151 LMGVP--ILGEYFEGK-NLEDIVIVSPDHGGVTRARKLADRLKAPIAIID 197
>1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase,
transferase; 2.65A {Methanocaldococcus jannaschii} SCOP:
c.61.1.2 c.61.1.2 PDB: 1u9z_A*
Length = 284
Score = 112 bits (283), Expect = 2e-27
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 1118 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPI 1177
D R +VDD++ + A ++LK++GA KI H +L DA + + +
Sbjct: 199 KTLDAKDRDVFIVDDIISTGGTMATAVKLLKEQGAKKIIAACVHPVLIGDALNKLYSAGV 258
Query: 1178 DEVVVTNTIPHDVQKLQCPKIKTVDISILLSEAI 1211
+EVV T+T ++ V ++ ++ + +
Sbjct: 259 EEVVGTDTYL--------SEVSKVSVAEVIVDLL 284
Score = 99.1 bits (248), Expect = 7e-23
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 573 KMRKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQDSI 632
K I + LAK+ ++ + +IT++ H+ I+ FF P A P L +Y++D
Sbjct: 96 KFNPGEAISIRALAKIY-SNIVDKLITINPHETHIKDFFTIPFIYGDAVPKLAEYVKD-- 152
Query: 633 PDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIH 666
+ +++A + GA + A + ++ L +
Sbjct: 153 -KLNDPIVLAPDKGALEFAKTASKILNAEYDYLE 185
Score = 68.3 bits (168), Expect = 2e-12
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 851 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLL 897
D R +VDD++ + A ++LK++GA KI H +L
Sbjct: 199 KTLDAKDRDVFIVDDIISTGGTMATAVKLLKEQGAKKIIAACVHPVL 245
Score = 51.8 bits (125), Expect = 5e-07
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 968 LVTVKLCAAEEIQGFFDCPVDNLRASPFLLQYIQ----DSVVV 1006
L+T+ I+ FF P A P L +Y++ D +V+
Sbjct: 119 LITINP-HETHIKDFFTIPFIYGDAVPKLAEYVKDKLNDPIVL 160
Score = 39.1 bits (92), Expect = 0.007
Identities = 6/49 (12%), Positives = 20/49 (40%), Gaps = 14/49 (28%)
Query: 987 VDNLRASPFLLQYIQDSVVVTNTIPHDVQKLQCPKIKTVDISILLSEAI 1035
++ L ++ + VV T+T ++ V ++ ++ + +
Sbjct: 250 LNKLYSAGV------EEVVGTDTYL--------SEVSKVSVAEVIVDLL 284
Score = 33.3 bits (77), Expect = 0.38
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 689 YLSGLPDRVLISHVSQIPDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIH 739
Y +P L +V + +++A + GA + A + ++ L +
Sbjct: 139 YGDAVP--KLAEYVKD--KLNDPIVLAPDKGALEFAKTASKILNAEYDYLE 185
>3lrt_A Ribose-phosphate pyrophosphokinase; phosphoribosyl transferase, ATP
analog binding, ATP-binding, metal-binding, nucleotide
biosynthesis; HET: ADP; 1.53A {Thermoplasma volcanium}
PDB: 3lpn_A* 3nag_A* 3mbi_A*
Length = 286
Score = 112 bits (282), Expect = 3e-27
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 1118 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPI 1177
DV G+ ++VDD++ + ++ +L+++GA KIYV A HGL + + I ++
Sbjct: 197 PNVDVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLFVNGSENKILQN-A 255
Query: 1178 DEVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMH 1215
DE+ VT+T+ K + + + IR +
Sbjct: 256 DEIHVTDTVE--------SKFSDISVYQEVCNYIRDID 285
Score = 98.4 bits (246), Expect = 1e-22
Identities = 15/94 (15%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 573 KMRKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQDSI 632
+ + I S++L ++ +S I T+D+H ++ + +L A+ +++Y +
Sbjct: 95 RYKNGEPISSQILTEIY-SSYSNSIATVDIHDEKTLSYSKVKFSDLHANDAIVRYYK--- 150
Query: 633 PDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIH 666
+ +V+ + G + + +L I
Sbjct: 151 -NVDVDYVVSPDDGGLARVADISAKLGKKHFFIE 183
Score = 69.5 bits (171), Expect = 8e-13
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 851 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLL 897
DV G+ ++VDD++ + ++ +L+++GA KIYV A HGL
Sbjct: 197 PNVDVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLF 243
Score = 53.7 bits (130), Expect = 1e-07
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 976 AEEIQGFFDCPVDNLRASPFLLQYIQ---DSVVV 1006
E+ + +L A+ +++Y + VV
Sbjct: 125 DEKTLSYSKVKFSDLHANDAIVRYYKNVDVDYVV 158
Score = 42.1 bits (100), Expect = 6e-04
Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 15/53 (28%)
Query: 987 VDNLRASPFLLQYIQDSVVVTNTIPHDVQKLQCPKIKTVDISILLSEAIRRMH 1039
+ + + D + VT+T+ K + + + IR +
Sbjct: 248 ENKILQNA-------DEIHVTDTVE--------SKFSDISVYQEVCNYIRDID 285
Score = 31.0 bits (71), Expect = 2.3
Identities = 5/50 (10%), Positives = 15/50 (30%), Gaps = 5/50 (10%)
Query: 690 LSGLPDRVLISHVSQIPDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIH 739
L ++ + + +V+ + G + + +L I
Sbjct: 139 LHAND--AIVRY---YKNVDVDYVVSPDDGGLARVADISAKLGKKHFFIE 183
>1jz7_A Lactase, beta-galactosidase, LACZ; TIM barrel (alpha/beta barrel),
jelly-roll barrel, immunoglobulin, beta supersandwich,
hydrolase; HET: GAL; 1.50A {Escherichia coli} SCOP:
b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 PDB: 1hn1_A
1jyx_A* 1jz3_A* 1jz4_A* 1jz5_A* 1jz6_A* 1dp0_A* 3iap_A*
1jz8_A* 1jyn_A* 1jyv_A* 1jyw_A* 3iaq_A* 1px3_A 1px4_A*
3czj_A* 3i3e_A 3i3d_A* 3i3b_A 3dym_A ...
Length = 1023
Score = 95.7 bits (238), Expect = 6e-20
Identities = 59/294 (20%), Positives = 106/294 (36%), Gaps = 40/294 (13%)
Query: 44 SVELEGYHVARIRDILTDITYHEDLKSWHLSVRVILEAGLSQAV-VKAKLT-AELAVGKK 101
V L +I D +++D L V + L + V L E V
Sbjct: 211 DVSLLHKPTTQISDFHVATRFNDDFSRAVLEAEVQMCGELRDYLRVTVSLWQGETQVASG 270
Query: 102 PLRVDSLVNAEPSHGEIEVVSTLMVLASEVELWWPNGYGEQP-LYNLQITL--ASGVEMS 158
+ E V L V +LW E P LY + L A G +
Sbjct: 271 TAPFGGEIIDERGGYADRVTLRLNV--ENPKLWSA----EIPNLYRAVVELHTADGTLIE 324
Query: 159 TKSIKIGFRTVELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNEST 218
++ +GFR V + + +N P+ +G N L + +E T
Sbjct: 325 AEACDVGFREVRI-----------ENGLLL--LNGKPLLIRGVNRHEHHPLHGQVMDEQT 371
Query: 219 IRDLLVSTKEANMNMLRVWGGGVYMSD-YFYETCDELGILIWQDM------MFACNNYPA 271
+ ++ K+ N N +R Y + +Y CD G+ + + M N
Sbjct: 372 MVQDILLMKQNNFNAVRC---SHYPNHPLWYTLCDRYGLYVVDEANIETHGMVPMNRLTD 428
Query: 272 TPTFLQSVRSEISQTVRRVQHHPCIAVW-----AGNNEMEAHNYDYYQNLWDPS 320
P +L ++ +++ V+R ++HP + +W +G+ Y + +++ DPS
Sbjct: 429 DPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRWIKSV-DPS 481
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro
structure initiative, NEW YORK SGX research center for
STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis}
Length = 667
Score = 91.3 bits (227), Expect = 8e-19
Identities = 47/269 (17%), Positives = 100/269 (37%), Gaps = 40/269 (14%)
Query: 63 TYHEDLKSWHLSVRVILEAGLSQAVVKAKLTAELAVGKKPLRVDSLVNAEPSHGEIEVVS 122
+ + +V L + + ++ + G K + +S + +I
Sbjct: 167 QEVVSPQEAKVCAKVNLSNRAADGTAELQVL--VTDGTKVICKESRNVSLKQGADILEQL 224
Query: 123 TLMVLASEVELWWPNGYGEQP-LYNLQITL-ASGVEMSTKSIKIGFRTVELIQDHVDPNH 180
L++ + LW E P +Y + I+L G ++ + + +G R DP+
Sbjct: 225 PLLI--QKPRLWNG---CEDPFMYQVSISLHKDGKQIDSVTQPLGLRYYH-----TDPD- 273
Query: 181 LEKGRYFYFEVNKVPIYSKGSNLIPVDVLPER---SNNESTIRDLLVSTKEANMNMLRVW 237
KG F +N + G E + D+ + +E +N +R+
Sbjct: 274 --KG----FFLNGKHLPLHGVCR--HQDRAEVGNALRPQHHEEDVAL-MREMGVNAIRL- 323
Query: 238 GGGVYM-SDYFYETCDELGILIW------QDMMFACNNYPATPTFLQSVRSEISQTVRRV 290
Y + Y Y+ D+ GI+ W +A + +F ++ + ++ + +R+
Sbjct: 324 --AHYPQATYMYDLMDKHGIVTWAEIPFVGPGGYADKGFVDQASFRENGKQQLIELIRQH 381
Query: 291 QHHPCIAVWAGNNEMEAHN---YDYYQNL 316
+HP I W NE++ +Y + L
Sbjct: 382 YNHPSICFWGLFNELKEVGDNPVEYVKEL 410
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II
(PSI-II), glycosyl hydrolase family 2, jelly-roll fold;
2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB:
3dec_A
Length = 1010
Score = 91.8 bits (228), Expect = 8e-19
Identities = 69/295 (23%), Positives = 109/295 (36%), Gaps = 45/295 (15%)
Query: 44 SVELEGYHVARIRD--ILTDITYHEDLKSWHLSVRVILEAGLSQAVVKAKLTAELAVGKK 101
V L I D + + E K ++ V +E G S T + A GK
Sbjct: 217 DVYLYSTPKQYIADYKVSASLD-KEKYKEGIFNLEVTVE-GPSATASSIAYTLKDASGKA 274
Query: 102 PLRVDSLVNAEPSHGEIEVVSTLMVLASEVELWWPNGYGEQP-LYNLQITL--ASGVEMS 158
V S G ++ +EV+ W E P LY L + L A G
Sbjct: 275 ---VLQDAINIKSRGLSNFIAFDEKKIAEVKAWNA----EHPNLYTLVLELKDAQGKVTE 327
Query: 159 TKSIKIGFRTVELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNEST 218
++GFRT E+ K F +N VP+ KG+N L R+ ++
Sbjct: 328 LTGCEVGFRTSEI-----------KDGRFC--INGVPVLVKGTNRHEHSQL-GRTVSKEL 373
Query: 219 IRDLLVSTKEANMNMLRVWGGGVYMSD-YFYETCDELGIL------IWQDMMFACNNYPA 271
+ + K+ N+NM+R Y + Y+Y+ CD G+ I M A
Sbjct: 374 MEQDIRLMKQHNINMVRN---SHYPTHPYWYQLCDRYGLYMIDEANIESHGMGYGPASLA 430
Query: 272 T-PTFLQSVRSEISQTVRRVQHHPCIAVW-----AGNNEMEAHNYDYYQNLWDPS 320
T+L + + R ++HP I +W AGN YD+ +++ +
Sbjct: 431 KDSTWLTAHMDRTHRMYERSKNHPAIVIWSQGNEAGNGINFERTYDWLKSV-EKG 484
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas
hydrolase, PSI-2, protein structure initiative; 2.70A
{Bacteroides fragilis}
Length = 692
Score = 85.6 bits (212), Expect = 4e-17
Identities = 58/275 (21%), Positives = 92/275 (33%), Gaps = 45/275 (16%)
Query: 63 TYHEDLKSWHLSVRVILEAGLSQAVVKAKLTAEL--AVGKKPLRVDSLVNAEPSHGEIEV 120
KS ++V+V L+ L + G+K + P G
Sbjct: 179 QKDVSKKSADITVKVKLD-NAGLQPAAVTLENTIYTQEGQKVGTHSRSFDLSP-QGTQTY 236
Query: 121 VSTLMVLASEVELWWPNGYGEQP-LYNLQITL-ASGVEMSTKSIKIGFRTVELIQDHVDP 178
+ST + LW + P LY + L A G + +G R E +
Sbjct: 237 LSTFKL--KNPHLWQG---RKDPYLYKVVCRLMADGKVIDEVVQPLGVRKYE-----IVA 286
Query: 179 NHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPER---SNNESTIRDLLVSTKEANMNMLR 235
KG F +N G NE DL + +R
Sbjct: 287 G---KG----FFLNGEKYSMYGVTR--HQDWWGLGSALKNEHHDFDLAA-IMDVGATTVR 336
Query: 236 VWGGGVYM-SDYFYETCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHP 294
Y SDY Y CD LG++IW + N T ++ +S++ + +R+ +HP
Sbjct: 337 F---AHYQQSDYLYSRCDTLGLIIW-AEIPCVNRV--TGYETENAQSQLRELIRQSFNHP 390
Query: 295 CIAVWAGNNEMEAHN---YDYYQNL------WDPS 320
I VW +NE+ + ++L DP
Sbjct: 391 SIYVWGLHNEVYQPHEYTAALTRSLHDLAKTEDPD 425
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel,
hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1
b.18.1.5 b.30.5.1 c.1.8.3
Length = 1024
Score = 85.3 bits (211), Expect = 7e-17
Identities = 54/293 (18%), Positives = 93/293 (31%), Gaps = 57/293 (19%)
Query: 44 SVELEGYHVARIRDILTDITYHEDLKSWHLSVRVILEAGLSQAVVKAKLTAELAVGKKPL 103
V L+ I D + + ++ + A + V +
Sbjct: 212 DVTLQARPAGGITDAWLRTGWSARSGAGTGTIDPEITADATAFPVTLSVPE--------- 262
Query: 104 RVDSLVNAEPSHGEIEVVSTLMVLASEVELWWPNGYGEQP-LYNLQITLASGVEMSTKSI 162
+ + E V+ L + VE W E P LY ++ A+ S+
Sbjct: 263 -----LGVNVTWKSAEEVAPLAL--ENVEPWSA----EVPRLYEASVSSAAESI----SV 307
Query: 163 KIGFRTVELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNESTIRDL 222
++GFRTV + G F VN + G N R +E+ R+
Sbjct: 308 RLGFRTVRI-----------VGDQFL--VNGRRVVFHGVNRHETHPDRGRVFDEAGARED 354
Query: 223 LVSTKEANMNMLRVWGGGVYMSD-YFYETCDELGIL------IWQ---DMMFACNNYPAT 272
L K N+N +R Y + DE+G + + N
Sbjct: 355 LALMKRFNVNAIRT---SHYPPHPRLLDLADEMGFWVILECDLETHGFEAGGWVENPSDV 411
Query: 273 PTFLQSVRSEISQTVRRVQHHPCIAVW-----AGNNEMEAHNYDYYQNLWDPS 320
P + ++ + +TV R ++HP I +W +G A + D S
Sbjct: 412 PAWRDALVDRMERTVERDKNHPSIVMWSLGNESGTGSNLAAMAAWAHAR-DSS 463
>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain,
beta-sandwich domai glycosyl hydrolase, glycosida
hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB:
3k46_A* 3k4d_A* 3lpg_A* 3k4a_A
Length = 605
Score = 83.6 bits (207), Expect = 1e-16
Identities = 47/303 (15%), Positives = 86/303 (28%), Gaps = 80/303 (26%)
Query: 44 SVELEGYHVARIRDILTDITYHEDLKSWHLSVRVILEAGLSQAVVKAKLTAELAVGKKPL 103
SV L + DI +D + +V V ++ EL + +
Sbjct: 175 SVMLYTTPNTWVDDITVVTHVAQDCNHASVDWQV---------VANGDVSVELRDADQQV 225
Query: 104 RVDSLVNAEPSHGEIEVVSTLMVLASEVELWWPNGYGEQP-LYNLQITLASGVEMSTKSI 162
+ + + G ++V LW P + LY L +T S E +
Sbjct: 226 ----VATGQGTSGTLQV--------VNPHLWQP----GEGYLYELCVTAKSQTECDIYPL 269
Query: 163 KIGFRTVELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNL---IPVD--VLPERSNNES 217
++G R+V + KG F +N P Y G +
Sbjct: 270 RVGIRSVAV-----------KGEQFL--INHKPFYFTGFGRHEDADLRGKGFDN----VL 312
Query: 218 TIRDLLVSTKEANMNMLRVWGGGVYMS-----DYFYETCDELGILIW------------- 259
+ D + N R S + + DE GI++
Sbjct: 313 MVHDHAL-MDWIGANSYR-------TSHYPYAEEMLDWADEHGIVVIDETAAVGFNLSLG 364
Query: 260 ------QDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEMEAHNYDYY 313
+ Q+ I + + R ++HP + +W+ NE +
Sbjct: 365 IGFEAGNKPKELYSEEAVNGETQQAHLQAIKELIARDKNHPSVVMWSIANEPDTRPQGAR 424
Query: 314 QNL 316
+
Sbjct: 425 EYF 427
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase,
glycosidase, disease mutat glycoprotein, hydrolase,
lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN
GUP; 1.70A {Homo sapiens} PDB: 1bhg_A*
Length = 613
Score = 82.1 bits (203), Expect = 5e-16
Identities = 56/288 (19%), Positives = 102/288 (35%), Gaps = 52/288 (18%)
Query: 44 SVELEGYHVARIRDILTDITYHEDLKSWHLSVRVILEAGLSQAVVKAKLT-AELAVGKKP 102
SV L I DI +T + S ++ ++ ++ G + ++ +L AE V
Sbjct: 197 SVLLYTTPTTYIDDI--TVTTSVEQDSGLVNYQISVK-GSNLFKLEVRLLDAENKV---- 249
Query: 103 LRVDSLVNAEPSHGEIEVVSTLMVLASEVELWWPNGYG-EQP-LYNLQITL----ASGVE 156
+ N + G+++V V LWWP LY+L++ L + G
Sbjct: 250 -----VANGTGTQGQLKV--------PGVSLWWPYLMHERPAYLYSLEVQLTAQTSLGPV 296
Query: 157 MSTKSIKIGFRTVELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPER---S 213
++ +G RTV + F +N P Y G N + R
Sbjct: 297 SDFYTLPVGIRTVAV-----------TKSQFL--INGKPFYFHGVNK--HEDADIRGKGF 341
Query: 214 NNESTIRDLLVSTKEANMNMLRVWGGGVY-MSDYFYETCDELGILIWQ--DMMFACNNYP 270
+ ++D + + N R Y ++ + CD GI++ +
Sbjct: 342 DWPLLVKDFNL-LRWLGANAFRT---SHYPYAEEVMQMCDRYGIVVIDECPGVGLALPQF 397
Query: 271 ATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEMEAHNYDYYQNLWD 318
L + + VRR ++HP + +W+ NE +H L
Sbjct: 398 FNNVSLHHHMQVMEEVVRRDKNHPAVVMWSVANEPASHLESAGYYLKM 445
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 82.4 bits (203), Expect = 7e-16
Identities = 122/733 (16%), Positives = 209/733 (28%), Gaps = 273/733 (37%)
Query: 97 AVGKKPLRVDSLVNAEPSHGEIEV---VSTLMVLASEVELWWPNGYGEQPLYNLQI---T 150
A +PL +L SHG +E V T + L EQ L
Sbjct: 3 AYSTRPL---TL-----SHGSLEHVLLVPTASFFIASQ-LQ------EQFNKILPEPTEG 47
Query: 151 LASGVEMSTKSIKIGFRTVEL-------IQDHVDPNHLEKGRYF--------YFEVNKVP 195
A+ E +T EL + V+P+ + G++ FE
Sbjct: 48 FAADDEPTTP--------AELVGKFLGYVSSLVEPS--KVGQFDQVLNLCLTEFENC--- 94
Query: 196 IYSKGSNL--IPVDVLPERSNNESTIRDLLVSTKEANMNMLR------------------ 235
Y +G+++ + +L E ++L+ + A + R
Sbjct: 95 -YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 236 -----VWGG-GVYMSDYFYETCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQTVRR 289
++GG G DYF +EL +D+ Y + + ++T+
Sbjct: 154 AQLVAIFGGQGN-TDDYF----EEL-----RDL------YQTYHVLVGDLIKFSAETLSE 197
Query: 290 VQHHPCIAVWAGNNEMEAHNYDYYQNLWDPSTAPKSRFCSEFGIQSLP-----QLSTFQK 344
+ ++ + + L +PS P + I S P QL+ +
Sbjct: 198 LIRTT-----LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI-SCPLIGVIQLAHYVV 251
Query: 345 VATEADLASWRTPFFDSRQHLAGGTGILESSVGHQFEIGNLTLEYFAYLSQCMAAIHALH 404
A TP + R +L G TG + V A A
Sbjct: 252 TAKLLGF----TP-GELRSYLKGATGHSQGLV--------------------TAVAIA-- 284
Query: 405 GRYATDQAGAIKTITEQMRRDKGVLREDGSGHNMGALYWQLNDI----YQAGAIKTITEQ 460
+ + ++ +R+ + L++ I Y+A ++
Sbjct: 285 ------ETDSWESFFVSVRK---AIT---------VLFF----IGVRCYEAYPNTSLPPS 322
Query: 461 MRRDKGVLREDGSGHNMGALYWQLNDVWQAPTWSSIDYDGNWKMLHYFARKFFAPVLISP 520
+ D E+ G P+ ML
Sbjct: 323 ILEDS---LENNEG---------------VPSP----------MLS-------------- 340
Query: 521 VLNVSSRTLE--VVLLND---PNRPLHNVTIVTESYAWNDTRPFRSVKTPLVTVVSGKMR 575
+ N++ ++ V N + + +++V N + VVSG +
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVE-ISLV------NGAKNL---------VVSGPPQ 384
Query: 576 K-RGCIVSKLLAKMMCTSGL-KHIITMDLHQKEIQGFFDCPVDNLRASPF---LLQYIQD 630
G ++ L K SGL + I + + F PV ASPF LL D
Sbjct: 385 SLYG--LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL-PV----ASPFHSHLLVPASD 437
Query: 631 SIPDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIHGEQKESESDEYEVDLTGRPDKVYL 690
I V+ N + I V G D L
Sbjct: 438 LINKDLVKNNVSFNAKD------------IQIPVYDTF-------------DGS-D---L 468
Query: 691 SGLPDRVLISHVSQI---P-DYKNAV------IVAKNPGAAKKATSYAERLR--LGIAVI 738
L + V I P ++ I+ PG A R + G+ VI
Sbjct: 469 RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVI 528
Query: 739 H-GEQKESESDEY 750
G + D+Y
Sbjct: 529 VAGTLDINPDDDY 541
Score = 66.2 bits (161), Expect = 7e-11
Identities = 106/592 (17%), Positives = 174/592 (29%), Gaps = 229/592 (38%)
Query: 618 LRASPFLLQY--IQDSIPDYKNAVIVAKNPGAAKKATSY--AERLRLGIAVIHGEQKESE 673
R P L + ++ + V P S+ A +L+ I E E
Sbjct: 6 TR--PLTLSHGSLEHVLL-------V---P-----TASFFIASQLQEQFNKILPEPTEGF 48
Query: 674 SDEYE----VDLTGR----------PDKV-----------------YLSG---------L 693
+ + E +L G+ P KV YL G L
Sbjct: 49 AADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL 108
Query: 694 P---DRVLISHVSQIPDYKNAVIVAKNPGAAKKATS----YAERLRLGIAVIHGEQKESE 746
D L+ I +Y A I+AK P KK+ S + I G Q
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRP-FDKKSNSALFRAVGEGNAQLVAIFGGQG--- 164
Query: 747 SDEYEVDLTRYIRENPELYYKEYAELYVNTLKPIVLQY-DPTRPYLTSSPTNGIESEKAK 805
N + Y++E +LY T +V + L+ +++EK
Sbjct: 165 --------------NTDDYFEELRDLY-QTYHVLVGDLIKFSAETLSELIRTTLDAEKV- 208
Query: 806 YALADNPYSNIYGDSGWTGVSSPSPCPAP--LLSYHGDGSKEKPPIS------------- 850
++ W + +PS P LLS PIS
Sbjct: 209 -------FTQGLNILEW--LENPSNTPDKDYLLSI---------PISCPLIGVIQLAHYV 250
Query: 851 VVGDVGGR-----------VAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLFD 899
V + G +V +A + + + A +LF
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLV--TAVAIAETDSWES--FFVSVRKAIT-VLF- 304
Query: 900 YDGNWKMLHYFARKFFAPVLI-----------SPVFNVS--------------------S 928
+ G + + P ++ SP+ ++S
Sbjct: 305 FIG-VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 929 RTLEVVLLNDPNRPLHNVTIVT---ES-YAWNDTRPFRSVKTP--LVTVKLCAAEE---I 979
+ +E+ L+N + V V+ +S Y N R K P L ++ +E
Sbjct: 364 KQVEISLVNGAK---NLV--VSGPPQSLYGLN--LTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 980 QGFFDCPVDNLRASPF---LLQYIQDSV---VVTNTIPHDVQKLQCPKIKTVD------- 1026
F PV ASPF LL D + +V N + + + +Q P T D
Sbjct: 417 SNRFL-PV----ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL 471
Query: 1027 ---ISILLSEAIRRMH------NKESMSYL--F-------------RNVDGR 1054
IS + + I R+ + +++ F RN DG
Sbjct: 472 SGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT 523
Score = 56.6 bits (136), Expect = 6e-08
Identities = 88/588 (14%), Positives = 152/588 (25%), Gaps = 259/588 (44%)
Query: 776 TLKPIVLQYD--------PTRPYLTSS------------PTNGIESEKAKYALADNPYSN 815
+ +P+ L + PT + +S PT G +A D P +
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEG-------FAADDEPTT- 56
Query: 816 IYGDSGWTGVSSPSPCPAPLLSY---HGDGSKEKPPISVVGDVGGRVAIMVDDMV----- 867
PA L+ + E + V + + + +
Sbjct: 57 ----------------PAELVGKFLGYVSSLVEPSKVGQFDQV---LNLCLTEFENCYLE 97
Query: 868 -DDVHSFVAA------AEVLKDRGAYKIYVLATHGL-----------LFD--YDGNWKM- 906
+D+H+ A ++K + K Y+ A LF +GN ++
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157
Query: 907 ---------LHYFA--RKFFA--PVLISPVFNVSSRTLEVVLLNDPNRPLHNVTIVTESY 953
YF R + VL+ + S+ TL L+ T
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE-LIRTTLDAEKVFTQGLNIL 216
Query: 954 AW---NDTRPFRSVKTPLVTVKLCAAEEIQGFFDCPVDNLRASPF------LLQYIQDSV 1004
W P D L + P ++Q V
Sbjct: 217 EWLENPSNTP-------------------------DKDYLLSIPISCPLIGVIQLAHYVV 251
Query: 1005 V--VTNTIPHDVQK-LQCPKIKTVDISILLSEAIRRMHNKES--------MSYLF----R 1049
+ P +++ L+ ++ + AI + ES ++ LF R
Sbjct: 252 TAKLLGFTPGELRSYLKG--ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
Query: 1050 --NVDGRASPPPSSIA--------PPSSPAVDLVTKTMPSVDG-------------RASP 1086
S PPS + PS P M S+ +
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPS-P--------MLSISNLTQEQVQDYVNKTNSHL 360
Query: 1087 PPPP-------------VL--PPSS--------RTMEMDVGVPQH--P-AKEKP------ 1114
P V+ PP S R + G+ Q P ++ K
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 1115 -PISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIE 1173
P++ HS LL+
Sbjct: 421 LPVASP-----------------FHS-----------------------------HLLVP 434
Query: 1174 -ESPIDEVVVTNTIPHDVQKLQCPKIKTVD------ISILLSEAIRRM 1214
I++ +V N + + + +Q P T D +S +SE I
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Score = 50.0 bits (119), Expect = 6e-06
Identities = 85/608 (13%), Positives = 180/608 (29%), Gaps = 227/608 (37%)
Query: 5 MQASFAWDWGPAMPSVGICDIYHIIIENESKQNLELGEK-----SVELEGYHVARIRDIL 59
+Q F P P+ G ++E EL K S +E V + +L
Sbjct: 33 LQEQFN-KILPE-PTEGFAA------DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL 84
Query: 60 --------TDITYHEDLKSWH-----LSVRVILEAGLSQAVVKAKLTAELAVGKKPL--R 104
D+ H L ++ ++K +TA + K+P +
Sbjct: 85 NLCLTEFENCYLEGNDI---HALAAKLLQENDTTLVKTKELIKNYITA-RIMAKRPFDKK 140
Query: 105 VDS-LVNAEPSHGEIEVVSTLMVL-----ASEV---ELWWPNGYGEQPLYNL-QITLASG 154
+S L A G + L+ + ++ EL + LY + +
Sbjct: 141 SNSALFRAVGE-GN----AQLVAIFGGQGNTDDYFEEL--------RDLYQTYHVLVGDL 187
Query: 155 VEMSTKSIKIGFRTVELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVL----- 209
++ S +++ ELI+ +D ++++G +++L
Sbjct: 188 IKFSAETLS------ELIRTTLDAE---------------KVFTQG-----LNILEWLEN 221
Query: 210 PERSNNESTIRDLLVS------TKEAN-MNMLRVWG-----------------GGVYMS- 244
P + ++ + + +S + A+ + ++ G G+ +
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 245 --------DYFYETCDE-LGILIW-----QDMMFACNNYPA------------TPTFLQS 278
+ F+ + + + +L + + + + P P+ + S
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEA-YPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 279 VR----SEISQTVRRVQHH-PC-----IAVWAGNNEMEAHNYDYYQNLWDPSTAPKSRFC 328
+ ++ V + H P I++ N K+
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISL---------VN------------GAKNLVV 379
Query: 329 SEFG-IQSLPQLST-FQKVATEADLASWRTPF------FDSR----------QHLAGGT- 369
S G QSL L+ +K + L R PF F +R L +
Sbjct: 380 S--GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASD 437
Query: 370 GILESSVGHQFEIGNLTLEYFAYLSQCMAAIHALHGRYATDQAGAIKTITEQMRRDKGVL 429
I + V + + I +D +I+E++ ++
Sbjct: 438 LINKDLVKNNVSFNAKDI-----------QIPVYDTFDGSDLRVLSGSISERIVDC--II 484
Query: 430 REDGSGHNMGALYWQLNDIYQA--------GAIKTITEQMRRDKGVLREDGSGHNM---G 478
R + W+ ++A G + R+K DG+G + G
Sbjct: 485 RL--------PVKWETTTQFKATHILDFGPGGASGLGVLTHRNK-----DGTGVRVIVAG 531
Query: 479 ALYWQLND 486
L +D
Sbjct: 532 TLDINPDD 539
Score = 36.2 bits (83), Expect = 0.100
Identities = 41/255 (16%), Positives = 75/255 (29%), Gaps = 87/255 (34%)
Query: 748 DEYEV-DLTRYIRENPELYYKEYAELYVNTLKPIVLQYDPTRPYLTSSPTNGIESEKAKY 806
D Y+ + + + ++K+ Y ++ IV+ +P + G
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKD---TYGFSILDIVIN-NPVNLTIHFGGEKG-------K 1682
Query: 807 ALADNPYSNIYGDSGWTGVSSPSPCPA----PLLSYHGDGSKEK--------PPISVVGD 854
+ +N YS + ++ G SY K P ++++
Sbjct: 1683 RIREN-YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME- 1740
Query: 855 VGGRVAIMVDDM-------VDDV---HS------FVAAAEVL---------KDRGAYKIY 889
A +D+ D HS + A+V+ RG
Sbjct: 1741 ----KAAF-EDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGM---- 1791
Query: 890 VLATHGLLFDYDG--NWKMLHYFARKFFAPVLISPVFN----------VSSRT---LEVV 934
+ D G N+ M+ A P ++ F+ V RT +E+V
Sbjct: 1792 -TMQVAVPRDELGRSNYGMI---A---INPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Query: 935 LLNDPNRPLHNVTIV 949
N N N V
Sbjct: 1845 --NY-NVE--NQQYV 1854
Score = 34.3 bits (78), Expect = 0.39
Identities = 44/264 (16%), Positives = 81/264 (30%), Gaps = 103/264 (39%)
Query: 975 AAEEIQGFFDCPVDNLRASPFLLQ-Y---IQDSVVVTNTIPHDVQKLQCPKIKTVDISIL 1030
AA+++ ++ RA Y I D +V+ N P T+
Sbjct: 1641 AAQDV---WN------RADNHFKDTYGFSILD-IVINN-----------PVNLTIHFGGE 1679
Query: 1031 LSEAIRRMHNKESMSYLFRN-VDGRASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPP 1089
+ IR + + +F VDG+ + + + S R+
Sbjct: 1680 KGKRIRENY----SAMIFETIVDGK---------LKTEKIFKEINEHSTSYTFRS---EK 1723
Query: 1090 PVLPPSSRTMEMDVGVPQH--PAKEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVL 1147
+L S T Q PA ++++ AA E L
Sbjct: 1724 GLL---SAT--------QFTQPA-----LTLME--------------------KAAFEDL 1747
Query: 1148 KDRGAYKI-YVLATHGL-----LSSDAPLLIEESPIDEVV---------VTNTIPHDVQK 1192
K +G A H L L+S A ++ I+ +V + +P D
Sbjct: 1748 KSKGLIPADATFAGHSLGEYAALASLADVM----SIESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 1193 LQCPKIKTVD---ISILLS-EAIR 1212
+ ++ ++ S EA++
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQ 1827
Score = 32.7 bits (74), Expect = 1.1
Identities = 38/235 (16%), Positives = 63/235 (26%), Gaps = 75/235 (31%)
Query: 25 IYHIIIENESKQNLELGEKSVELEGYHVARIRDILTDITYHEDLKSWHLSVRVILEAGLS 84
I I+I N ++ G RIR+ + + + + + ++ E
Sbjct: 1661 ILDIVINNPV-------NLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEH 1713
Query: 85 QAVV-----KAKL--TAELAVGKKPLRVDSLVNAEPSHGEIEVVSTLMVLAS--EVELWW 135
K L T +P+ + L E
Sbjct: 1714 STSYTFRSEKGLLSATQ---------------FTQPA----------LTLMEKAAFEDLK 1748
Query: 136 PNGY------------GEQPLYNLQITLAS--GVEMSTKSIKIGFRTV----ELIQDHVD 177
G GE Y LAS V MS +S V +Q V
Sbjct: 1749 SKGLIPADATFAGHSLGE---YA---ALASLADV-MSIES---LVEVVFYRGMTMQVAVP 1798
Query: 178 PNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNESTIRDLLVSTKEANMN 232
+ L + Y +N + + + + + ER + LV N N
Sbjct: 1799 RDELGRSNYGMIAINPGRV-AASFSQEALQYVVERVGKRT---GWLVEI--VNYN 1847
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural
genomics, glycosidase, PSI-2, protein initiative; 2.40A
{Bacteroides vulgatus}
Length = 801
Score = 80.6 bits (199), Expect = 2e-15
Identities = 45/275 (16%), Positives = 92/275 (33%), Gaps = 46/275 (16%)
Query: 63 TYHEDLKSWHLSVRVILEAGLSQAV-VKAKLTAELAVGKKPLRVDSLVNAEPSHGEIEVV 121
+ ++ +S ++ + +E + + VK L A + + +
Sbjct: 173 SKLQNKQSATYTLSIEIETQEKKPIKVKTYLQAP---NGSIADTSEKIFVSSADSLCFLS 229
Query: 122 STLMVLASEVELWWPNGYGEQP-LYNLQITL-ASGVEMSTKSIKIGFRTVELIQDHVDPN 179
++ + LW P + P +Y L L + + +GFR +E +P
Sbjct: 230 GSI----RKPLLWSP----DSPNVYTLICQLTRDNKILDECRLPVGFRQLE-----FNPV 276
Query: 180 HLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPER---SNNESTIRDLLVSTKEANMNMLRV 236
F +N + KG + ++ L + K+ N +R
Sbjct: 277 SG-------FLLNGKSLKIKGVCD--HHTVGAVGAAVPDDLLHYRLKL-LKDMGCNAIRT 326
Query: 237 WGGGVYM-SDYFYETCDELGILIW----QDMMFACNNYPATPTFLQSVRSEISQTVRRVQ 291
S FY CD +GI++ F + + +++ ++R +
Sbjct: 327 ---SHNPFSPAFYNLCDTMGIMVLNEGLDGWNQPKAADDYGNYFDEWWQKDMTDFIKRDR 383
Query: 292 HHPCIAVWAGNNEMEAHNYDYYQNL------WDPS 320
+HP I +W+ NE+ + NL DP
Sbjct: 384 NHPSIIMWSIGNEVTGATPEIQHNLVSLFHQLDPD 418
>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase,
hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A
Length = 1032
Score = 76.1 bits (187), Expect = 5e-14
Identities = 67/334 (20%), Positives = 105/334 (31%), Gaps = 81/334 (24%)
Query: 42 EKSVELEGYHV---ARIRD--ILTDITYHEDLKSWHLSVRVILEAGLSQAVVKAKLTAEL 96
+ V L + A I D + T + LSV+V ++ G S + L E
Sbjct: 202 YRDVSL--LKLPKKAHIEDVRVTTTFV-DSQYQDAELSVKVDVQ-GSSYDHINFTLY-EP 256
Query: 97 AVGKKPLRVDSLVNAEPSH------------GEIEVVSTLMVLASEVELWWPNGYGEQP- 143
G K SL+N E + + + + E W E P
Sbjct: 257 EDGSKVYDASSLLNEENGNTTFSTKEFISFSTKKNEETAFKINVKAPEHW----TAENPT 312
Query: 144 LYNLQITL--ASGVEMSTKSIKIGFRTVELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGS 201
LY Q+ L + G + + +GFR VEL K VN I +G
Sbjct: 313 LYKYQLDLIGSDGSVIQSIKHHVGFRQVEL-----------KDGNIT--VNGKDILFRGV 359
Query: 202 NLIPVDVLPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMSD-YFYETCDELGILI-- 258
N R+ + L+ K+ N+N +R Y + Y+ D+LG +
Sbjct: 360 NRHDHHPRFGRAVPLDFVVRDLILMKKFNINAVRN---SHYPNHPKVYDLFDKLGFWVID 416
Query: 259 --------------------------WQDMMFACNNYPA-TPTFLQSVRSEISQTVRRVQ 291
+ +Y + P + + SQ V R
Sbjct: 417 EADLETHGVQEPFNRHTNLEAEYPDTKNKLYDVNAHYLSDNPEYEVAYLDRASQLVLRDV 476
Query: 292 HHPCIAVW-----AGNNEMEAHNYDYYQNLWDPS 320
+HP I +W A Y + L DP+
Sbjct: 477 NHPSIIIWSLGNEACYGRNHKAMYKLIKQL-DPT 509
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.3 bits (145), Expect = 4e-09
Identities = 82/538 (15%), Positives = 151/538 (28%), Gaps = 150/538 (27%)
Query: 402 ALHGRYATDQAGAIKTI-TEQMRRDKGVLRE-DGSGH--NMG-------------ALYWQ 444
+ G G+ KT + V + D N+ L +Q
Sbjct: 154 LIDG-----VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 445 LNDIYQAGAIKTITEQMRRD--KGVLREDGSGHNMGALYWQ----LNDVWQAPTWSSIDY 498
++ + + + + ++R + LR Y L +V A W
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRR----LLKSKPYENCLLVLLNVQNAKAW----- 259
Query: 499 DGNWKMLHYFARKFFAPVLISPVLNVSSRTLEVVLLNDPNRPLHNVTIVTESYAWNDTRP 558
F N+S + L +T TR
Sbjct: 260 -----------NAF----------NLSCKIL--------------LT----------TR- 273
Query: 559 FRSVKTPLVTVVSGKMRKRGCIVSKLLAKMMCTSGLKHIITMDLHQKEIQGFFDCPVDNL 618
F+ V +S + L L K + DC +L
Sbjct: 274 FKQV----TDFLSAATTTHISLDHHS-------MTLTPDEVKSLLLK----YLDCRPQDL 318
Query: 619 RA-----SPFLLQYIQDSIPDYKNAVIVAKNPGAAKKATSYAERLRLGIAVIHGEQKESE 673
+P L I +SI D K+ K T + + V + +E
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI----IESSLNV----LEPAE 370
Query: 674 SDEYEVDLTGRPDKVYLSGLPDRVLISHVSQIPDYKNAVIVAK--NPGAAKKATSYAERL 731
+ L+ P + +P +L + V+V K +K +
Sbjct: 371 YRKMFDRLSVFPPSAH---IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK---QPKES 424
Query: 732 RLGIAVIHGEQKESESDEYEVDLTRYIRENPELYYKEYAELYVNTLKPIVL-QYDPTRPY 790
+ I I+ E K +EY L R I + +Y + L P L QY +
Sbjct: 425 TISIPSIYLELKVKLENEYA--LHRSIVD----HYNIPKTFDSDDLIPPYLDQY--FYSH 476
Query: 791 LTSSPTNGIESEKAKYALADNPYSNIYGDSGWTG-----VSSPSPCPAPLLSYHGDGSKE 845
+ G + ++ + ++ D + S+ +L+
Sbjct: 477 I------GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 846 KPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYK-IYVLATHGLLFDYDG 902
KP I D + +V+ ++D F+ E Y + +A L+ + +
Sbjct: 531 KPYIC---DNDPKYERLVNAILD----FLPKIEENLICSKYTDLLRIA---LMAEDEA 578
Score = 57.6 bits (138), Expect = 3e-08
Identities = 60/448 (13%), Positives = 114/448 (25%), Gaps = 123/448 (27%)
Query: 666 HGEQKESESDEYEVDLTGRPDKVYLSGLPDRVLISHVSQIPDYKNAVIVAKNPGAAKKAT 725
H + + E + + V + D +++ + +
Sbjct: 1 HHHHHHMDFETGEHQYQYK--DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK 58
Query: 726 SYAERLRLGIAVIHGEQK--------ESESDEYEVDLTRYIREN--PELYYKEYAELYVN 775
+ +Q+ E Y+ ++ E P + + Y E +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE-QRD 117
Query: 776 TLK---PIVLQYDPTRPYLTSSPTNGIESEKAKYALADNPYSNIYGDSG----------- 821
L + +Y+ +R P + +A L I G G
Sbjct: 118 RLYNDNQVFAKYNVSRL----QPYLKLR--QALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 822 --------------WTGVS---SPSPCPAPL--LSYHGDGSKEKPPISVVGDVGGRVAIM 862
W + SP L L Y D +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS-------------- 217
Query: 863 VDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLL-FD--YDGN-WKMLHYFARKFFAPV 918
D + + L+ K Y + LL + W
Sbjct: 218 -DHSSNIKLRIHSIQAELRRLLKSKPYE---NCLLVLLNVQNAKAWN------------- 260
Query: 919 LISPVFNVSSRTLEVVLLNDPNRPLHNVTIVTESYAWNDTRPFRSVK-----TPLVTVKL 973
FN+S + L + VT+ + T TP L
Sbjct: 261 ----AFNLSCKIL--LTTRFKQ--------VTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 974 CAAEEIQGFFDCPVDNLRA-----SPFLLQYIQDSVVVTNTIPHDVQKLQCPKIKTV-DI 1027
+ DC +L +P L I +S+ + + + C K+ T+ +
Sbjct: 307 LLK-----YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 1028 SI--LLSEAIRRMHNKESMSYLFR-NVD 1052
S+ L R+M + +S +F +
Sbjct: 362 SLNVLEPAEYRKMF--DRLS-VFPPSAH 386
Score = 42.9 bits (100), Expect = 8e-04
Identities = 77/570 (13%), Positives = 159/570 (27%), Gaps = 182/570 (31%)
Query: 50 YHVARIRDILTDITYHEDLKSWHLSVR----VILE----AGLSQAVVKAKLTAELAVGKK 101
Y+V+R++ L L+ L +R V+++ +G K + ++
Sbjct: 129 YNVSRLQPYLK-------LRQALLELRPAKNVLIDGVLGSG------KTWVALDV----- 170
Query: 102 PLRVDSLVNAEPSHGEI------EVVSTLMVLASEVELWWPNGYGEQPLYNLQITLASGV 155
+ +I S VL +L Y P + + +S +
Sbjct: 171 -CLSYKVQCKMD--FKIFWLNLKNCNSPETVLEMLQKLL----YQIDPNWTSRSDHSSNI 223
Query: 156 EMSTKSIKIGFRTVE---------LIQDHV-DPNHLEKGRYFYFEVN-KVPIYSKGSNLI 204
++ SI+ R + L+ +V + F ++ K+ + ++ +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-----AFNLSCKILLTTRFKQVT 278
Query: 205 PVDVLPERSNNESTIRDLLVS-TKEANMNMLRVWGGGVYMSDYFYETCDELGILIWQDMM 263
D L + ++ ++ T + ++L Y +L
Sbjct: 279 --DFLSAATTTHISLDHHSMTLTPDEVKSLL---------LKYLDCRPQDLPRE------ 321
Query: 264 FACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEMEAHNYDYYQNLWDPSTAP 323
P +S ++ W N+ + N +T
Sbjct: 322 -VLTTNP----RR------LSIIAESIRDGLAT--W--------DNWKHV-NCDKLTTII 359
Query: 324 KSRFCSEFGIQSLP---------QLSTFQKVA--TEADLAS-WR-TPFFDSR---QHLAG 367
+S + L +LS F A L+ W D L
Sbjct: 360 ES------SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 368 GTGILESSVGHQFEIGNLTLEYFAYLSQCMAAIHALHGRYATDQAGAIKTITEQMR---- 423
+ + + I ++ Y + ALH ++I +
Sbjct: 414 YSLVEKQPKESTISIPSI---YLELKVKLENEY-ALH-----------RSIVDHYNIPKT 458
Query: 424 ---RDKGVLREDGSGHNMGALYW------QLNDIYQAGAIKTITEQMRR---D----KGV 467
D D Y+ L +I + R D +
Sbjct: 459 FDSDDLIPPYLDQ--------YFYSHIGHHLKNIEHPERM----TLFRMVFLDFRFLEQK 506
Query: 468 LREDGSGHNMGALYWQLNDVWQAPTWSS--IDYDGNWKMLHY----FARKFFAPVLISPV 521
+R D + N A LN + Q + D D ++ L F K ++ S
Sbjct: 507 IRHDSTAWN--ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 522 LNVSSRTLEVVLLNDPNRPLHNVTIVTESY 551
++ L + L+ + + I E++
Sbjct: 565 TDL----LRIALMAE------DEAIFEEAH 584
Score = 38.7 bits (89), Expect = 0.014
Identities = 40/314 (12%), Positives = 89/314 (28%), Gaps = 111/314 (35%)
Query: 19 SVGICD-----------IYHIIIEN-----ESKQNLELGEKSVELEGYHVARIRD----- 57
++ C+ + + I N + N++L S++ E + + +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 58 -ILTDITYHEDLKSWHLSVRVILEAGLSQAVVKAKLTAELAVGKKPLRVDSLVNAEPSHG 116
+L ++ + +++LS +++L T V D L A +H
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILL------------TTRFKQV------TDFLSAATTTHI 289
Query: 117 EIEVVSTLMVLASEVEL---WWPNGYGEQPLYNLQIT-LASGVEMSTKSIKIGF------ 166
++ S + L + + P L + + +SI+ G
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR--LSIIAESIRDGLATWDNW 347
Query: 167 ---------RTVELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLP------- 210
+E + ++P + + ++ ++ IP +L
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEY-RKMFDRLS-----VFPPSAH-IPTILLSLIWFDVI 400
Query: 211 -----------------ERSNNESTIR--DLLVSTKEANMNMLRV--------------- 236
E+ ESTI + + K N +
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 237 -WGGGV-YMSDYFY 248
Y+ YFY
Sbjct: 461 SDDLIPPYLDQYFY 474
>2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell
membrane, fungal cell WALL, transglycosyl glucan,
membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae}
PDB: 2w62_A* 2w63_A*
Length = 555
Score = 53.0 bits (126), Expect = 5e-07
Identities = 19/152 (12%), Positives = 49/152 (32%), Gaps = 18/152 (11%)
Query: 183 KGRYFYFEVNKVPIYSKG---------------SNLIPVDVLPERSNNESTIRDLLVSTK 227
G F+ + + KG + + ++ + +RD+ K
Sbjct: 39 VGNKFFDSESGEQFFIKGIAYQLQRSEEELSNANGAFETSYIDALADPKICLRDI-PFLK 97
Query: 228 EANMNMLRVWGGGVYMS-DYFYETCDELGILIWQDM-MFACNNYPATPTFLQSVRSEISQ 285
+N LRV+ S D E G+ + D+ + P++ +
Sbjct: 98 MLGVNTLRVYAIDPTKSHDICMEALSAEGMYVLLDLSEPDISINRENPSWDVHIFERYKS 157
Query: 286 TVRRVQHHPCIAVWAGNNEMEAHNYDYYQNLW 317
+ + P + + N++ + + + + +
Sbjct: 158 VIDAMSSFPNLLGYFAGNQVTNDHTNTFASPF 189
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Length = 208
Score = 43.0 bits (101), Expect = 2e-04
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 1121 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 1180
GR ++VDD V S AA V+ G ++ V + L EV
Sbjct: 117 ARKGRDVVLVDDGVATGASMEAALSVVFQEGPRRVVVAVPVASPEAVERL----KARAEV 172
Query: 1181 VVTNTIPH 1188
V +
Sbjct: 173 VALSVPQD 180
Score = 38.8 bits (90), Expect = 0.005
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 854 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHG 895
GR ++VDD V S AA V+ G ++ V
Sbjct: 117 ARKGRDVVLVDDGVATGASMEAALSVVFQEGPRRVVVAVPVA 158
>2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta
barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3
Length = 353
Score = 40.1 bits (93), Expect = 0.004
Identities = 27/201 (13%), Positives = 52/201 (25%), Gaps = 39/201 (19%)
Query: 188 YFEVNKVPIYSKGSNLIPVDVLPERSN-----NESTIRDLLVSTKEANMNMLRVWG---G 239
N I+ G+N V+ + + +ST L + N +RVW G
Sbjct: 11 NLNYNGHHIFLSGANQAWVNYARDFGHNQYSKGKSTFESTLSDMQSHGGNSVRVWLHIEG 70
Query: 240 GVYMS------------------DYFYETCDELGILI----WQDMMFACNNYPATPTFLQ 277
+ ILI W + +Y +
Sbjct: 71 ESTPEFDNNGYVTGIDNTLISDMRAYLHAAQRHNILIFFTLWNGAVKQSTHYRLNGLMVD 130
Query: 278 SVRSE------ISQTVRRVQHHPCIAVWAGNNEMEAHNYDYYQN---LWDPSTAPKSRFC 328
+ + + + +++ + W NE E + +D S
Sbjct: 131 TRKLQSYIDHALKPMANALKNEKALGGWDIMNEPEGEIKPGESSSEPCFDTRHLSGSGAG 190
Query: 329 SEFGIQSLPQLSTFQKVATEA 349
+ S ++ F A
Sbjct: 191 WAGHLYSAQEIGRFVNWQAAA 211
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.46
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 3/19 (15%)
Query: 2 LRKMQAS---FAWDWGPAM 17
L+K+QAS +A D PA+
Sbjct: 22 LKKLQASLKLYADDSAPAL 40
Score = 30.3 bits (67), Expect = 2.3
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 15/40 (37%)
Query: 1041 KESMSYLFRNVDGRASPPPSSI---APPSSPAVDLVTKTM 1077
K+++ L +S+ A S+PA+ + TM
Sbjct: 19 KQALKKL-----------QASLKLYADDSAPAL-AIKATM 46
Score = 29.5 bits (65), Expect = 3.4
Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 5/27 (18%)
Query: 399 AIHALHGR---YATDQAG--AIKTITE 420
A+ L YA D A AIK E
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKATME 47
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 2.50A
{Pyrococcus horikoshii} SCOP: c.61.1.1
Length = 153
Score = 31.1 bits (71), Expect = 1.0
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 837 SYHGDGSKEKPPI---SVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYV 890
Y G + + P+ + GD+ + ++VDD+ D + E +K GA +I +
Sbjct: 60 FYKGIDERGEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKI 116
>2c7f_A Alpha-L-arabinofuranosidase; glycosidase, xylan, arabinan,
hydrolase; HET: AHR; 2.7A {Clostridium thermocellum}
SCOP: b.71.1.2 c.1.8.3 PDB: 2c8n_A
Length = 513
Score = 32.6 bits (73), Expect = 1.1
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 220 RDLLVSTKEANMNMLRVWGGGVYMSDYFYETCDELGILIWQDMMFACNNYPATPTFLQSV 279
+D++ KE N+ ++R + GG ++S+YF+E G+ +D + + Q
Sbjct: 62 KDVIELVKELNVPIIR-YPGGNFVSNYFWED----GVGPVEDRPRRLDLAWKSIEPNQVG 116
Query: 280 RSEISQTVRRVQHHPCIAVWAGNNEM-EAHNYDYYQNLWDPSTAPKSR 326
+E ++ ++V +AV G + +A N Y N S R
Sbjct: 117 INEFAKWCKKVNAEIMMAVNLGTRGISDACNLLEYCNHPGGSKYSDMR 164
>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2,
protein structure initiative, PSI, center for eukaryotic
structural genomics, CESG; 2.20A {Mus musculus} PDB:
3hlt_A
Length = 259
Score = 31.7 bits (73), Expect = 1.3
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 1139 SFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEVVV 1182
S AA +++ + + +L L + + + P + VV+
Sbjct: 75 SLTAARNLIEQKQVRPMLLLDDRAL--PEFTGVQTQDP-NAVVI 115
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 1.4
Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 718 PGAAKK-ATSYAERLRLGIAVIHGEQKESESDEYEVDLTRYIRENPELYYKEYAE 771
P + +K +RL ++ ++ S E + +++ E + + +E
Sbjct: 84 PESIRKWREEQRKRL---------QELDAASKVMEQEWREKAKKDLEEWNQRQSE 129
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 31.2 bits (70), Expect = 1.6
Identities = 10/65 (15%), Positives = 12/65 (18%)
Query: 1051 VDGRASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSSRTMEMDVGVPQHPA 1110
V G P + P V + A PP M P
Sbjct: 131 VRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMG 190
Query: 1111 KEKPP 1115
Sbjct: 191 PPPGM 195
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase,
membrane traffic, coiled coil, exocytosis,
phosphoprotein; HET: GNP; 2.60A {Saccharomyces
cerevisiae}
Length = 320
Score = 31.4 bits (70), Expect = 1.9
Identities = 5/64 (7%), Positives = 16/64 (25%)
Query: 1054 RASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSSRTMEMDVGVPQHPAKEK 1113
+ + ++ + + + R + P S ++ +
Sbjct: 255 VSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPASVEYHAGMKSLNKA 314
Query: 1114 PPIS 1117
P S
Sbjct: 315 PYSS 318
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A
{Bacillus caldolyticus} SCOP: c.61.1.1
Length = 209
Score = 30.6 bits (69), Expect = 2.2
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 854 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVL 891
DV R I+VD M+ S VAA + LK RGA I +
Sbjct: 121 DVEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFM 158
Score = 30.6 bits (69), Expect = 2.2
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 1121 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVL 1158
DV R I+VD M+ S VAA + LK RGA I +
Sbjct: 121 DVEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFM 158
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 30.9 bits (69), Expect = 2.7
Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
Query: 1057 PPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSSRTMEMDVGVPQHPAKEKPPI 1116
S + P S SV AS + PP + P PA PP
Sbjct: 9 HHSSGLVPRGSHM----VIPSASVTSAASDFLAALHPPVTVPDPAP-PPPPAPAAGNPPD 63
Query: 1117 SVVGDVGGRV 1126
+V GD +
Sbjct: 64 TVTGDSVLQR 73
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 30.3 bits (69), Expect = 2.7
Identities = 12/122 (9%), Positives = 33/122 (27%), Gaps = 25/122 (20%)
Query: 381 EIGNLTLEYFAYLSQCMAAIHALHGRYATDQAGAIK------TITEQMRRDKGVLREDGS 434
+ + A + ++A R+ A ++ R +
Sbjct: 18 LLAHPATASGARFM--LGYVYAFMDRFDE----ARASFQALQQQAQKSGDHTAEHR---A 68
Query: 435 GHNMGALYWQLNDIYQAGAIK------TITEQMRRDKGVLREDGSGHNMGALYWQLNDVW 488
H +G + + + A A + + + D + + + + D+
Sbjct: 69 LHQVGMVERMAGN-WDA-ARRCFLEERELLASLPEDPL--AASANAYEVATVALHFGDLA 124
Query: 489 QA 490
A
Sbjct: 125 GA 126
>1qw9_A Arabinosidase, alpha-L-arabinofuranosidase; hydrolase; HET: KHP;
1.20A {Geobacillus stearothermophilus} SCOP: b.71.1.2
c.1.8.3 PDB: 1pz2_A* 1qw8_A* 1pz3_A
Length = 502
Score = 30.7 bits (68), Expect = 3.3
Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 6/108 (5%)
Query: 220 RDLLVSTKEANMNMLRVWGGGVYMSDYFYETCDELGILIWQDMMFACNNYPATPTFLQSV 279
+D++ KE + ++R + GG ++S Y +E G+ + + + +
Sbjct: 54 QDVIELVKELQVPIIR-YPGGNFVSGYNWED----GVGPKEQRPRRLDLAWKSVETNEIG 108
Query: 280 RSEISQTVRRVQHHPCIAVWAGNNEM-EAHNYDYYQNLWDPSTAPKSR 326
+E + V +AV G + A N Y N S R
Sbjct: 109 LNEFMDWAKMVGAEVNMAVNLGTRGIDAARNLVEYCNHPSGSYYSDLR 156
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 30.0 bits (66), Expect = 3.4
Identities = 12/61 (19%), Positives = 20/61 (32%)
Query: 1055 ASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSSRTMEMDVGVPQHPAKEKP 1114
PP P +P+ ++ + + S+ P V PS +V PA
Sbjct: 36 RKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQ 95
Query: 1115 P 1115
Sbjct: 96 E 96
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 30.3 bits (69), Expect = 3.7
Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 16/81 (19%)
Query: 836 LSYHGDGSKEKPPISVVG-DVGGR--VAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 892
L + PP VG D+G V ++ D V + A V+KD
Sbjct: 16 LIVREIVNPLPPP-YKVGVDLGTADIVLVVTDQEGIPVAGALKWASVVKD---------- 64
Query: 893 THGLLFDYDGNWKMLHYFARK 913
GL+ DY G +++ K
Sbjct: 65 --GLVVDYIGAIQIVRELKAK 83
>2xlk_A CSY4 endoribonuclease; hydrolase-RNA complex, endoribonuclease,
crispr; 1.80A {Pseudomonas aeruginosa} PDB: 2xlj_A
2xli_A
Length = 191
Score = 29.9 bits (67), Expect = 4.2
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 19/88 (21%)
Query: 645 PGAAKKATSYAERLRLGIAVIHGEQKESESDEYEVDLTGRPDKVYLSGLPDRVLISHVSQ 704
P + + ERLR+ H DL + +L GL D + +
Sbjct: 49 PDLDESRSRLGERLRI-----HASAD---------DLRALLARPWLEGLRDHLQFGEPAV 94
Query: 705 IPDYKNAVIVAKNPGAAKKATSYAERLR 732
+P V++ +A S ERLR
Sbjct: 95 VPHPTPYRQVSRV-----QAKSNPERLR 117
>2wvx_A Mannosidase, putative alpha-1,2-mannosidase; glycoside hydrolase
family 92, GH92, hydrolase, BT3990; HET: MSE; 1.90A
{Bacteroides thetaiotaomicron} PDB: 2wvz_A* 2ww0_A*
2ww1_A* 2ww3_A* 2wvx_B* 2wzs_A*
Length = 744
Score = 30.3 bits (69), Expect = 4.5
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 7/34 (20%)
Query: 295 CIAVWA---GNNEMEAHNY----DYYQNLWDPST 321
CI A + E + Y+NL+D +
Sbjct: 454 CIYRLAKELKRPKKEISLFAKRAMNYKNLFDKES 487
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 30.2 bits (67), Expect = 4.9
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 1057 PPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSS 1096
PPPS+ +P ++P + S + P P S
Sbjct: 34 PPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSG 73
Score = 29.4 bits (65), Expect = 7.4
Identities = 13/62 (20%), Positives = 21/62 (33%)
Query: 1036 RRMHNKESMSYLFRNVDGRASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPS 1095
RR+ + M+ L P PPS+ + + + RAS P P +
Sbjct: 7 RRLSDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAA 66
Query: 1096 SR 1097
Sbjct: 67 PS 68
>2xbu_A Hypoxanthine-guanine phosphoribosyltransferase; glycosyltransferase,
purine salvage, FLIP pepti; HET: 5GP; 1.80A
{Saccharomyces cerevisiae} PDB: 2jkz_A* 2jky_A*
Length = 221
Score = 29.7 bits (66), Expect = 5.2
Identities = 12/65 (18%), Positives = 24/65 (36%)
Query: 1095 SSRTMEMDVGVPQHPAKEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYK 1154
S + +VGV + D+ G+ ++VD++ D + A L+ A +
Sbjct: 74 SVGSEVEEVGVKVSRTQWIDYEQCKLDLVGKNVLIVDEVDDTRTTLHYALSELEKDAAEQ 133
Query: 1155 IYVLA 1159
Sbjct: 134 AKAKG 138
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 29.9 bits (68), Expect = 5.3
Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 2/55 (3%)
Query: 1057 PPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSSRTMEMDVG-VPQHPA 1110
P P + +V +P+ PP + + +P H A
Sbjct: 7 APDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQH-TSKAAAPRIPADRLPNHVA 60
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 29.5 bits (65), Expect = 5.4
Identities = 15/85 (17%), Positives = 24/85 (28%)
Query: 1056 SPPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSSRTMEMDVGVPQHPAKEKPP 1115
PPP P + + P S L P + + + P
Sbjct: 23 PPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNHSEPLSAELASVICPS 82
Query: 1116 ISVVGDVGGRVAIMVDDMVDDVHSF 1140
++ + R A V +VDD
Sbjct: 83 LAYANTMFFRSAYNVQVVVDDNEPE 107
>3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif,
tetramerisat (alpha,beta,BETA,alpha), endoprotease,
hydrolase; 2.70A {Staphylococcus aureus}
Length = 394
Score = 30.0 bits (68), Expect = 5.5
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 744 ESESDEYEVDLTRYIRENPELYYKEY--AELYVNTLK 778
E+ Y ++++ I E PEL +E + ++ LK
Sbjct: 12 ETNKYSY-IEISHRIHERPELGNEEIFASRTLIDRLK 47
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 29.3 bits (65), Expect = 6.6
Identities = 12/62 (19%), Positives = 14/62 (22%)
Query: 1054 RASPPPSSIAPPSSPAVDLVTKTMPSVDGRASPPPPPVLPPSSRTMEMDVGVPQHPAKEK 1113
+ P+ P S V P P P E P K K
Sbjct: 24 QVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPK 83
Query: 1114 PP 1115
P
Sbjct: 84 PK 85
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase
COG0622); structural genomics, predicted
phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus
pneumoniae} SCOP: d.159.1.7
Length = 176
Score = 28.8 bits (65), Expect = 8.0
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 878 EVLKDRGAYKIYVLATHGLLFDYDGNWKMLHYFARKFFAPVLIS 921
++ + G+ KI THG LFD + N++ L Y+A++ A + +
Sbjct: 70 RLVTELGSTKIIQ--THGHLFDINFNFQKLDYWAQEEEAAICLY 111
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.402
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 19,403,394
Number of extensions: 1231579
Number of successful extensions: 3003
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2888
Number of HSP's successfully gapped: 112
Length of query: 1231
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1126
Effective length of database: 3,770,088
Effective search space: 4245119088
Effective search space used: 4245119088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.6 bits)