BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15570
(84 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C4K|A Chain A, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|B Chain B, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|C Chain C, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|D Chain D, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|E Chain E, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|F Chain F, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
Length = 370
Score = 102 bits (254), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 61/76 (80%)
Query: 7 VPQHPAKEKPPISVVGDVGGRVAIXXXXXXXXXHSFVAAAEVLKDRGAYKIYVLATHGLL 66
+P AKEKPPI+VVGDVGGR+AI SFVAAAE+LK+RGAYKIYV+ATHG+L
Sbjct: 249 LPLMMAKEKPPITVVGDVGGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVMATHGIL 308
Query: 67 SSDAPLLIEESPIDEV 82
S++AP LIEES +DEV
Sbjct: 309 SAEAPRLIEESSVDEV 324
>pdb|2JI4|A Chain A, Human Phosphoribosylpyrophosphate Synthetase - Associated
Protein 41 (Pap41)
Length = 379
Score = 95.9 bits (237), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 58/76 (76%)
Query: 7 VPQHPAKEKPPISVVGDVGGRVAIXXXXXXXXXHSFVAAAEVLKDRGAYKIYVLATHGLL 66
+P KEKPPI+VVGDVGGR+AI SF+AAAE LK+RGAYKI+V+ATHGLL
Sbjct: 253 IPMLIPKEKPPITVVGDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVMATHGLL 312
Query: 67 SSDAPLLIEESPIDEV 82
SSDAP IEES IDEV
Sbjct: 313 SSDAPRRIEESAIDEV 328
>pdb|3DAH|A Chain A, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|B Chain B, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|C Chain C, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
Length = 319
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 18 ISVVGDVGGRVAIXXXXXXXXXHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEES 77
++++G+V GR + + AA+VLK+RGA +++ ATH +LS A I S
Sbjct: 208 MNIIGEVEGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVLSGGAADRIAAS 267
Query: 78 PIDEV 82
+DE+
Sbjct: 268 ALDEL 272
>pdb|1DKR|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKR|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1IBS|A Chain A, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
pdb|1IBS|B Chain B, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
Length = 317
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 18 ISVVGDVGGRVAIXXXXXXXXXHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEES 77
+++VG++ G+ AI + AA L + GA ++Y TH +LS A I S
Sbjct: 209 MNIVGNIEGKTAILIDDIIDTAGTITLAANALVENGAKEVYACCTHPVLSGPAVERINNS 268
Query: 78 PIDEV 82
I E+
Sbjct: 269 TIKEL 273
>pdb|2H07|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant S132a
pdb|2H07|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant S132a
Length = 326
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 12 AKEKPPISVVGDVGGRVAIXXXXXXXXXHSFVAAAEVLKDRGAYKIYVLATHGLLSSDA 70
A E + +VGDV RVAI + AA+ L GA ++Y + THG+ S A
Sbjct: 199 ANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPA 257
>pdb|2H08|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant Y146m
pdb|2H08|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant Y146m
Length = 326
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 12 AKEKPPISVVGDVGGRVAIXXXXXXXXXHSFVAAAEVLKDRGAYKIYVLATHGLLSSDA 70
A E + +VGDV RVAI + AA+ L GA ++Y + THG+ S A
Sbjct: 199 ANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPA 257
>pdb|2H06|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|2H06|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|2HCR|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 In Complex With Amp(Atp), Cadmium And
Sulfate Ion
pdb|2HCR|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 In Complex With Amp(Atp), Cadmium And
Sulfate Ion
pdb|3EFH|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|3EFH|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|3S5J|B Chain B, 2.0a Crystal Structure Of Human Phosphoribosyl
Pyrophosphate Synthetase 1
pdb|3S5J|A Chain A, 2.0a Crystal Structure Of Human Phosphoribosyl
Pyrophosphate Synthetase 1
Length = 326
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 12 AKEKPPISVVGDVGGRVAIXXXXXXXXXHSFVAAAEVLKDRGAYKIYVLATHGLLSSDA 70
A E + +VGDV RVAI + AA+ L GA ++Y + THG+ S A
Sbjct: 199 ANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPA 257
>pdb|3MBI|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|C Chain C, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|D Chain D, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
Length = 287
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 23 DVGGRVAIXXXXXXXXXHSFVAAAEVLKDRGAYKIYVLATHGLL 66
DV G+ + + ++ +L+++GA KIYV A HGL
Sbjct: 202 DVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLF 245
>pdb|3LPN|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LPN|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LRT|A Chain A, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3LRT|B Chain B, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3NAG|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
pdb|3NAG|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
Length = 286
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 23 DVGGRVAIXXXXXXXXXHSFVAAAEVLKDRGAYKIYVLATHGLL 66
DV G+ + + ++ +L+++GA KIYV A HGL
Sbjct: 200 DVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLF 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.137 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,148,227
Number of Sequences: 62578
Number of extensions: 60193
Number of successful extensions: 124
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112
Number of HSP's gapped (non-prelim): 12
length of query: 84
length of database: 14,973,337
effective HSP length: 52
effective length of query: 32
effective length of database: 11,719,281
effective search space: 375016992
effective search space used: 375016992
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)