Query psy15570
Match_columns 84
No_of_seqs 126 out of 1030
Neff 6.6
Searched_HMMs 46136
Date Sat Aug 17 00:42:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15570.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15570hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14572 Pribosyl_synth: Phosp 99.9 1.6E-23 3.4E-28 144.6 6.8 80 3-82 60-139 (184)
2 COG0462 PrsA Phosphoribosylpyr 99.8 3E-20 6.6E-25 136.7 6.3 78 5-82 185-270 (314)
3 PRK04923 ribose-phosphate pyro 99.8 3.9E-19 8.4E-24 131.0 7.3 66 17-82 208-273 (319)
4 PRK02269 ribose-phosphate pyro 99.8 3.9E-19 8.5E-24 130.9 7.3 66 17-82 208-273 (320)
5 PRK02458 ribose-phosphate pyro 99.8 5E-19 1.1E-23 130.6 7.5 65 18-82 210-274 (323)
6 PTZ00145 phosphoribosylpyropho 99.8 1.1E-18 2.4E-23 133.2 7.3 66 17-82 326-391 (439)
7 PRK07199 phosphoribosylpyropho 99.7 5.8E-18 1.3E-22 123.9 7.1 61 22-82 207-267 (301)
8 PRK00553 ribose-phosphate pyro 99.7 8.5E-18 1.8E-22 124.5 7.5 68 15-82 207-278 (332)
9 PRK03092 ribose-phosphate pyro 99.7 9.3E-18 2E-22 122.9 6.9 65 18-82 193-257 (304)
10 PLN02297 ribose-phosphate pyro 99.7 5.3E-17 1.2E-21 120.2 7.2 63 20-82 224-292 (326)
11 PRK02812 ribose-phosphate pyro 99.7 5.5E-17 1.2E-21 120.1 7.2 66 17-82 221-286 (330)
12 KOG1448|consensus 99.7 8.3E-17 1.8E-21 117.8 6.7 70 12-81 199-269 (316)
13 PLN02369 ribose-phosphate pyro 99.7 8.7E-17 1.9E-21 117.7 6.6 66 17-82 193-258 (302)
14 PRK00934 ribose-phosphate pyro 99.7 2.1E-16 4.5E-21 114.7 7.2 61 22-82 200-260 (285)
15 PRK01259 ribose-phosphate pyro 99.7 2.3E-16 5E-21 115.7 7.0 66 17-82 199-264 (309)
16 PRK06827 phosphoribosylpyropho 99.7 3.7E-16 8.1E-21 117.7 7.7 63 19-82 256-323 (382)
17 KOG1503|consensus 99.6 4.5E-16 9.8E-21 112.5 7.3 82 1-82 222-303 (354)
18 TIGR01251 ribP_PPkin ribose-ph 99.6 6.3E-15 1.4E-19 107.9 6.7 63 20-82 204-266 (308)
19 PRK08525 amidophosphoribosyltr 99.5 3.4E-14 7.5E-19 108.6 6.5 59 24-82 338-396 (445)
20 PRK05793 amidophosphoribosyltr 99.4 9.4E-13 2E-17 101.3 6.4 61 22-82 349-409 (469)
21 PLN02293 adenine phosphoribosy 99.3 5.4E-12 1.2E-16 87.1 7.5 59 22-80 120-179 (187)
22 PRK13811 orotate phosphoribosy 99.3 2.9E-11 6.4E-16 82.1 8.3 75 5-80 78-157 (170)
23 TIGR00201 comF comF family pro 99.3 9.1E-12 2E-16 85.4 5.8 49 14-62 139-188 (190)
24 PRK13812 orotate phosphoribosy 99.3 3.4E-11 7.3E-16 82.4 8.1 76 4-80 79-160 (176)
25 PRK13809 orotate phosphoribosy 99.2 5.1E-11 1.1E-15 83.5 8.4 74 5-79 89-170 (206)
26 PRK00129 upp uracil phosphorib 99.2 2.3E-11 5E-16 84.8 6.6 57 20-78 118-174 (209)
27 PF00156 Pribosyltran: Phospho 99.2 3.1E-11 6.8E-16 76.2 6.3 42 22-63 84-125 (125)
28 PRK02304 adenine phosphoribosy 99.2 3.9E-11 8.5E-16 81.3 7.0 58 18-75 104-163 (175)
29 PRK11595 DNA utilization prote 99.2 1.7E-11 3.8E-16 86.2 5.4 48 15-62 176-223 (227)
30 TIGR01091 upp uracil phosphori 99.2 4.3E-11 9.4E-16 83.4 6.1 56 20-77 116-171 (207)
31 PRK09162 hypoxanthine-guanine 99.2 6.9E-11 1.5E-15 80.9 6.0 41 22-62 93-133 (181)
32 TIGR01090 apt adenine phosphor 99.2 1E-10 2.3E-15 78.9 6.7 53 24-76 107-159 (169)
33 COG1040 ComFC Predicted amidop 99.2 7.9E-11 1.7E-15 83.3 6.3 52 11-62 168-220 (225)
34 PRK13810 orotate phosphoribosy 99.2 2.4E-10 5.2E-15 79.0 8.2 75 5-80 95-175 (187)
35 PRK02277 orotate phosphoribosy 99.1 1.1E-10 2.4E-15 81.0 5.1 52 22-76 136-187 (200)
36 TIGR01203 HGPRTase hypoxanthin 99.1 2.3E-10 4.9E-15 77.4 6.1 42 22-63 80-121 (166)
37 PRK05205 bifunctional pyrimidi 99.1 2.8E-10 6.1E-15 77.3 6.5 43 20-62 89-132 (176)
38 PRK12560 adenine phosphoribosy 99.1 8E-10 1.7E-14 76.2 8.2 57 23-79 111-168 (187)
39 PRK07272 amidophosphoribosyltr 99.1 1.9E-10 4.1E-15 89.1 5.5 58 17-74 340-398 (484)
40 TIGR00336 pyrE orotate phospho 99.1 9.6E-10 2.1E-14 74.6 8.1 60 20-79 101-162 (173)
41 PRK00455 pyrE orotate phosphor 99.0 1.7E-09 3.7E-14 74.8 8.4 74 5-79 86-165 (202)
42 PLN02238 hypoxanthine phosphor 99.0 4.5E-10 9.7E-15 77.5 5.1 49 22-73 93-141 (189)
43 PRK09123 amidophosphoribosyltr 99.0 7E-10 1.5E-14 85.8 6.7 55 24-78 358-420 (479)
44 PRK07322 adenine phosphoribosy 99.0 6.1E-10 1.3E-14 76.0 5.0 40 23-62 117-156 (178)
45 PRK15423 hypoxanthine phosphor 99.0 1.8E-09 3.9E-14 74.1 6.1 40 23-62 89-128 (178)
46 TIGR01367 pyrE_Therm orotate p 98.9 2.7E-09 5.9E-14 73.6 6.7 60 5-64 80-143 (187)
47 TIGR01744 XPRTase xanthine pho 98.9 3.5E-09 7.7E-14 73.3 6.7 55 25-79 116-170 (191)
48 PTZ00271 hypoxanthine-guanine 98.9 1.9E-09 4.2E-14 75.9 5.4 46 22-70 114-159 (211)
49 PRK09246 amidophosphoribosyltr 98.9 2.3E-09 4.9E-14 83.2 6.0 43 22-64 354-396 (501)
50 PTZ00149 hypoxanthine phosphor 98.9 2.6E-09 5.6E-14 76.6 5.5 40 23-62 147-186 (241)
51 PRK09219 xanthine phosphoribos 98.9 5.7E-09 1.2E-13 72.3 6.7 55 25-79 116-170 (189)
52 COG0856 Orotate phosphoribosyl 98.9 1.9E-09 4E-14 74.7 4.2 55 23-80 138-192 (203)
53 COG0634 Hpt Hypoxanthine-guani 98.9 2.5E-09 5.5E-14 73.6 4.8 47 22-71 89-135 (178)
54 PRK06031 phosphoribosyltransfe 98.9 7.8E-09 1.7E-13 73.7 6.8 54 24-78 152-205 (233)
55 PRK08341 amidophosphoribosyltr 98.9 5E-09 1.1E-13 80.5 6.0 45 21-65 329-373 (442)
56 PRK05500 bifunctional orotidin 98.9 1.3E-08 2.8E-13 78.9 8.2 76 4-80 365-446 (477)
57 PRK06781 amidophosphoribosyltr 98.9 3.9E-09 8.6E-14 81.5 5.2 49 17-65 338-387 (471)
58 PLN02440 amidophosphoribosyltr 98.8 6.8E-09 1.5E-13 80.3 5.9 42 22-63 336-377 (479)
59 KOG3367|consensus 98.8 7.5E-09 1.6E-13 71.8 4.9 59 10-71 104-167 (216)
60 PRK07631 amidophosphoribosyltr 98.8 9.7E-09 2.1E-13 79.5 6.1 44 22-65 344-387 (475)
61 COG0461 PyrE Orotate phosphori 98.8 1.7E-08 3.8E-13 70.7 6.1 71 11-82 92-167 (201)
62 TIGR01134 purF amidophosphorib 98.8 1.4E-08 3.1E-13 77.8 5.9 41 22-62 334-374 (442)
63 KOG1712|consensus 98.8 1.8E-08 3.8E-13 69.1 5.2 61 16-76 110-172 (183)
64 PRK06388 amidophosphoribosyltr 98.7 1.8E-08 3.8E-13 78.1 5.8 42 23-64 353-394 (474)
65 PRK07349 amidophosphoribosyltr 98.7 1.8E-08 3.8E-13 78.5 5.6 43 22-64 373-415 (500)
66 COG0503 Apt Adenine/guanine ph 98.7 3E-08 6.5E-13 68.0 5.4 54 25-78 115-168 (179)
67 COG0035 Upp Uracil phosphoribo 98.7 2.5E-08 5.5E-13 70.3 4.9 56 20-77 118-174 (210)
68 COG1926 Predicted phosphoribos 98.7 5.6E-08 1.2E-12 68.8 5.8 55 22-78 120-174 (220)
69 PLN02541 uracil phosphoribosyl 98.7 4.1E-08 8.9E-13 70.5 5.1 54 22-77 152-208 (244)
70 PRK07847 amidophosphoribosyltr 98.6 7.9E-08 1.7E-12 75.1 5.9 42 23-64 364-405 (510)
71 PRK08558 adenine phosphoribosy 98.6 1.3E-07 2.9E-12 67.4 6.6 52 24-76 174-225 (238)
72 PF14681 UPRTase: Uracil phosp 98.6 1.2E-07 2.6E-12 66.2 5.0 55 20-76 115-171 (207)
73 TIGR01743 purR_Bsub pur operon 98.3 9.4E-07 2E-11 64.3 5.4 48 25-74 193-240 (268)
74 PRK09177 xanthine-guanine phos 98.3 9.2E-07 2E-11 59.4 4.2 28 24-51 82-109 (156)
75 COG2236 Predicted phosphoribos 98.3 4.1E-07 8.9E-12 63.4 2.4 35 24-58 85-119 (192)
76 PRK09213 pur operon repressor; 98.3 1.5E-06 3.2E-11 63.4 5.2 40 25-64 195-234 (271)
77 COG2065 PyrR Pyrimidine operon 98.2 1.8E-06 4E-11 59.3 4.8 46 17-62 87-133 (179)
78 COG0034 PurF Glutamine phospho 98.0 6.4E-06 1.4E-10 63.8 4.0 42 23-64 345-386 (470)
79 KOG0572|consensus 97.8 3.6E-05 7.7E-10 59.0 4.2 44 21-64 351-394 (474)
80 PF15609 PRTase_2: Phosphoribo 97.4 0.00034 7.5E-09 48.9 5.0 37 26-62 121-157 (191)
81 KOG1017|consensus 96.3 0.01 2.2E-07 42.5 5.0 54 20-75 183-238 (267)
82 PF15610 PRTase_3: PRTase ComF 93.4 0.16 3.5E-06 37.4 4.5 39 23-61 135-173 (274)
83 PF01488 Shikimate_DH: Shikima 86.6 2.5 5.5E-05 27.1 5.2 37 21-61 7-43 (135)
84 KOG0814|consensus 84.7 1.7 3.6E-05 30.9 3.8 52 11-65 15-67 (237)
85 PF13793 Pribosyltran_N: N-ter 82.4 7.4 0.00016 24.8 5.9 45 18-62 39-87 (116)
86 smart00450 RHOD Rhodanese Homo 81.7 4.4 9.5E-05 23.0 4.3 33 23-58 53-85 (100)
87 PF10662 PduV-EutP: Ethanolami 81.4 4 8.8E-05 27.2 4.5 41 33-76 99-139 (143)
88 cd00158 RHOD Rhodanese Homolog 78.9 6.4 0.00014 22.1 4.4 34 24-60 48-81 (89)
89 cd01529 4RHOD_Repeats Member o 78.2 6.6 0.00014 23.1 4.4 32 25-59 55-86 (96)
90 cd01444 GlpE_ST GlpE sulfurtra 76.9 5.6 0.00012 23.1 3.8 31 25-58 55-85 (96)
91 PRK07199 phosphoribosylpyropho 76.8 14 0.0003 27.2 6.5 59 4-62 21-88 (301)
92 COG2185 Sbm Methylmalonyl-CoA 73.2 9.8 0.00021 25.5 4.5 54 28-82 65-119 (143)
93 PLN02369 ribose-phosphate pyro 69.5 25 0.00055 25.9 6.4 45 18-62 30-78 (302)
94 COG0462 PrsA Phosphoribosylpyr 69.3 20 0.00043 27.0 5.8 59 4-62 23-91 (314)
95 PRK00934 ribose-phosphate pyro 69.1 26 0.00056 25.5 6.4 45 18-62 38-85 (285)
96 cd01518 RHOD_YceA Member of th 68.4 16 0.00034 21.7 4.4 32 25-59 60-91 (101)
97 PRK02269 ribose-phosphate pyro 68.0 29 0.00064 25.7 6.6 45 18-62 44-92 (320)
98 PTZ00145 phosphoribosylpyropho 67.9 30 0.00064 27.2 6.8 45 18-62 158-206 (439)
99 COG0117 RibD Pyrimidine deamin 67.7 13 0.00029 25.0 4.2 51 29-80 72-124 (146)
100 TIGR01697 PNPH-PUNA-XAPA inosi 66.7 24 0.00053 25.0 5.7 50 19-68 43-97 (248)
101 PRK02812 ribose-phosphate pyro 66.4 32 0.00069 25.8 6.5 45 18-62 60-108 (330)
102 TIGR01251 ribP_PPkin ribose-ph 65.6 30 0.00064 25.4 6.1 45 18-62 39-88 (308)
103 PRK00676 hemA glutamyl-tRNA re 64.7 19 0.00042 27.2 5.1 36 22-61 170-205 (338)
104 cd01528 RHOD_2 Member of the R 64.1 21 0.00045 21.1 4.4 32 25-59 57-88 (101)
105 PHA02588 cd deoxycytidylate de 63.8 8.1 0.00018 26.2 2.7 45 36-80 105-149 (168)
106 TIGR02884 spore_pdaA delta-lac 63.3 22 0.00049 24.6 4.9 58 21-79 31-90 (224)
107 PLN02297 ribose-phosphate pyro 63.2 46 0.001 25.0 6.8 56 6-62 38-104 (326)
108 PRK04923 ribose-phosphate pyro 63.0 38 0.00082 25.2 6.3 45 18-62 45-93 (319)
109 PF02875 Mur_ligase_C: Mur lig 62.3 22 0.00048 20.8 4.2 34 28-61 13-47 (91)
110 TIGR01809 Shik-DH-AROM shikima 61.5 26 0.00056 25.3 5.1 35 23-61 122-156 (282)
111 PRK03092 ribose-phosphate pyro 60.4 47 0.001 24.5 6.4 45 18-62 28-76 (304)
112 cd01080 NAD_bind_m-THF_DH_Cycl 59.0 50 0.0011 22.2 5.9 49 22-78 40-89 (168)
113 PLN02469 hydroxyacylglutathion 58.6 27 0.00059 24.9 4.8 51 20-75 16-67 (258)
114 cd01519 RHOD_HSP67B2 Member of 58.3 26 0.00056 20.6 4.1 32 25-59 65-96 (106)
115 TIGR00640 acid_CoA_mut_C methy 58.0 24 0.00053 22.8 4.1 55 26-81 53-108 (132)
116 PRK06827 phosphoribosylpyropho 58.0 45 0.00098 25.6 6.1 45 18-63 69-131 (382)
117 PF11382 DUF3186: Protein of u 57.9 57 0.0012 24.1 6.5 56 20-75 77-133 (308)
118 cd01523 RHOD_Lact_B Member of 57.6 24 0.00053 20.7 3.8 28 25-55 60-87 (100)
119 PRK14719 bifunctional RNAse/5- 56.7 16 0.00035 27.7 3.5 41 38-80 51-97 (360)
120 cd01525 RHOD_Kc Member of the 56.4 30 0.00065 20.4 4.1 32 25-59 64-95 (105)
121 PRK00553 ribose-phosphate pyro 55.9 55 0.0012 24.5 6.2 45 18-62 48-96 (332)
122 PLN02962 hydroxyacylglutathion 55.8 34 0.00074 24.5 4.9 48 25-75 34-82 (251)
123 PRK01259 ribose-phosphate pyro 55.4 49 0.0011 24.4 5.8 45 18-62 39-87 (309)
124 COG0540 PyrB Aspartate carbamo 55.2 33 0.00072 25.9 4.9 44 21-66 153-196 (316)
125 cd01532 4RHOD_Repeat_1 Member 53.2 29 0.00062 20.3 3.6 32 25-59 49-82 (92)
126 PRK08508 biotin synthase; Prov 53.0 20 0.00044 25.8 3.4 43 40-83 75-117 (279)
127 PRK08202 purine nucleoside pho 52.7 40 0.00086 24.4 4.9 49 19-67 65-118 (272)
128 PF06925 MGDG_synth: Monogalac 51.3 27 0.00058 22.9 3.6 39 43-83 79-118 (169)
129 COG0031 CysK Cysteine synthase 51.1 29 0.00062 26.0 4.0 29 35-64 176-204 (300)
130 cd01449 TST_Repeat_2 Thiosulfa 51.1 44 0.00095 20.1 4.3 31 25-58 77-107 (118)
131 cd01524 RHOD_Pyr_redox Member 50.7 45 0.00098 19.2 4.2 29 26-58 51-79 (90)
132 PF13344 Hydrolase_6: Haloacid 50.5 12 0.00026 22.9 1.6 39 33-79 61-100 (101)
133 cd01447 Polysulfide_ST Polysul 49.7 22 0.00048 20.7 2.7 31 25-58 60-90 (103)
134 cd01522 RHOD_1 Member of the R 48.9 40 0.00086 20.8 3.9 33 25-60 63-95 (117)
135 TIGR03581 EF_0839 conserved hy 48.7 12 0.00025 27.1 1.6 30 40-69 135-164 (236)
136 PF07931 CPT: Chloramphenicol 47.8 23 0.00049 24.1 2.8 35 26-64 83-118 (174)
137 PF14502 HTH_41: Helix-turn-he 47.4 24 0.00052 19.5 2.4 22 37-58 18-39 (48)
138 PRK14581 hmsF outer membrane N 47.2 83 0.0018 26.1 6.3 37 24-62 104-141 (672)
139 PRK00258 aroE shikimate 5-dehy 47.1 73 0.0016 22.7 5.5 35 23-61 120-154 (278)
140 PRK13940 glutamyl-tRNA reducta 46.5 56 0.0012 25.2 5.0 37 21-61 176-212 (414)
141 COG0784 CheY FOG: CheY-like re 46.3 61 0.0013 19.1 5.1 26 25-53 4-29 (130)
142 KOG4203|consensus 46.1 20 0.00044 28.2 2.6 28 29-56 389-416 (473)
143 TIGR02764 spore_ybaN_pdaB poly 45.9 52 0.0011 21.8 4.4 52 27-79 7-59 (191)
144 PF04015 DUF362: Domain of unk 45.9 44 0.00095 22.6 4.0 49 34-82 17-65 (206)
145 cd01527 RHOD_YgaP Member of th 45.1 49 0.0011 19.3 3.8 31 25-58 53-83 (99)
146 COG2100 Predicted Fe-S oxidore 44.9 32 0.00069 26.7 3.4 42 41-82 176-218 (414)
147 PF08973 TM1506: Domain of unk 44.9 23 0.00049 23.4 2.4 45 27-80 46-90 (134)
148 COG0287 TyrA Prephenate dehydr 44.8 16 0.00035 26.7 1.8 33 37-69 96-128 (279)
149 PF00581 Rhodanese: Rhodanese- 44.4 63 0.0014 18.7 4.3 35 25-59 66-102 (113)
150 TIGR03865 PQQ_CXXCW PQQ-depend 44.0 59 0.0013 21.5 4.3 44 25-78 115-159 (162)
151 COG0169 AroE Shikimate 5-dehyd 43.9 70 0.0015 23.5 5.0 34 24-61 124-157 (283)
152 cd01534 4RHOD_Repeat_3 Member 43.9 57 0.0012 19.0 3.9 30 25-58 55-84 (95)
153 TIGR00021 rpiA ribose 5-phosph 43.7 36 0.00077 24.1 3.4 41 36-80 21-64 (218)
154 PRK05320 rhodanese superfamily 43.4 64 0.0014 23.2 4.7 32 24-58 173-204 (257)
155 PF01555 N6_N4_Mtase: DNA meth 43.4 22 0.00048 23.4 2.2 23 26-48 190-212 (231)
156 PRK12769 putative oxidoreducta 43.3 1.3E+02 0.0028 24.3 6.8 53 24-80 466-522 (654)
157 cd00419 Ferrochelatase_C Ferro 42.7 15 0.00033 23.8 1.3 36 39-76 76-111 (135)
158 COG0726 CDA1 Predicted xylanas 42.4 39 0.00084 22.7 3.3 50 28-78 67-117 (267)
159 cd01453 vWA_transcription_fact 42.4 71 0.0015 21.4 4.6 35 27-62 109-144 (183)
160 cd01533 4RHOD_Repeat_2 Member 42.2 72 0.0016 19.0 4.2 29 25-56 65-93 (109)
161 COG0773 MurC UDP-N-acetylmuram 42.1 1E+02 0.0022 24.5 5.9 41 12-54 310-350 (459)
162 cd02071 MM_CoA_mut_B12_BD meth 41.4 74 0.0016 19.8 4.3 44 37-81 62-105 (122)
163 cd01480 vWA_collagen_alpha_1-V 41.4 93 0.002 20.5 5.0 51 26-78 110-163 (186)
164 smart00849 Lactamase_B Metallo 40.8 50 0.0011 20.7 3.5 38 27-67 15-53 (183)
165 PF12646 DUF3783: Domain of un 40.8 65 0.0014 17.8 4.7 31 28-60 2-32 (58)
166 PRK02458 ribose-phosphate pyro 40.2 1.5E+02 0.0034 22.0 6.5 45 18-62 48-96 (323)
167 PF13738 Pyr_redox_3: Pyridine 40.2 76 0.0016 20.6 4.4 34 23-61 164-197 (203)
168 PLN02389 biotin synthase 40.2 29 0.00064 26.4 2.7 40 41-83 154-193 (379)
169 PF02698 DUF218: DUF218 domain 39.5 49 0.0011 21.0 3.3 38 24-61 68-105 (155)
170 TIGR01740 pyrF orotidine 5'-ph 39.5 67 0.0015 22.0 4.2 42 30-74 51-94 (213)
171 PRK12749 quinate/shikimate deh 39.1 94 0.002 22.6 5.1 35 23-61 121-155 (288)
172 cd01526 RHOD_ThiF Member of th 38.9 56 0.0012 20.1 3.4 32 25-59 71-103 (122)
173 PRK04194 hypothetical protein; 38.8 40 0.00087 26.0 3.2 27 32-60 255-281 (392)
174 TIGR02801 tolR TolR protein. T 38.6 1E+02 0.0022 19.3 5.5 13 70-82 112-124 (129)
175 PF03681 UPF0150: Uncharacteri 38.4 9.7 0.00021 20.1 -0.1 20 33-52 22-41 (48)
176 TIGR03413 GSH_gloB hydroxyacyl 38.3 82 0.0018 22.1 4.6 36 27-67 20-55 (248)
177 cd01398 RPI_A RPI_A: Ribose 5- 38.1 47 0.001 23.1 3.3 17 36-52 21-37 (213)
178 TIGR00299 conserved hypothetic 37.9 43 0.00094 25.8 3.2 27 32-60 254-280 (382)
179 PF03192 DUF257: Pyrococcus pr 37.7 21 0.00045 25.1 1.4 25 28-55 40-64 (210)
180 cd01520 RHOD_YbbB Member of th 37.7 94 0.002 19.3 4.4 29 25-55 85-113 (128)
181 PRK14027 quinate/shikimate deh 37.5 1E+02 0.0022 22.4 5.0 34 24-61 125-158 (283)
182 cd04820 PA_M28_1_1 PA_M28_1_1: 36.6 1.1E+02 0.0023 20.2 4.6 39 23-61 47-93 (137)
183 PLN02160 thiosulfate sulfurtra 36.3 87 0.0019 20.0 4.1 44 25-78 80-123 (136)
184 COG2072 TrkA Predicted flavopr 36.2 66 0.0014 24.8 4.0 37 23-64 172-208 (443)
185 PRK07878 molybdopterin biosynt 36.1 1.3E+02 0.0028 22.8 5.5 49 25-83 342-390 (392)
186 COG0373 HemA Glutamyl-tRNA red 35.4 99 0.0022 24.2 4.9 38 20-61 172-209 (414)
187 PF02153 PDH: Prephenate dehyd 35.4 16 0.00034 25.9 0.5 30 39-68 79-108 (258)
188 PRK15108 biotin synthase; Prov 35.0 51 0.0011 24.6 3.2 41 38-81 109-149 (345)
189 PRK00702 ribose-5-phosphate is 34.8 48 0.001 23.4 2.9 18 35-52 25-42 (220)
190 PLN02428 lipoic acid synthase 34.7 1.3E+02 0.0028 22.9 5.4 56 27-83 148-210 (349)
191 TIGR02571 ComEB ComE operon pr 34.5 34 0.00074 22.8 2.0 43 37-80 92-134 (151)
192 PRK10241 hydroxyacylglutathion 34.4 58 0.0013 23.0 3.3 36 27-67 22-57 (251)
193 COG4565 CitB Response regulato 34.4 1E+02 0.0022 22.3 4.5 25 28-53 48-72 (224)
194 cd01448 TST_Repeat_1 Thiosulfa 34.2 96 0.0021 18.7 3.9 34 25-60 78-111 (122)
195 TIGR00510 lipA lipoate synthas 33.8 1.3E+02 0.0028 22.3 5.1 55 27-81 109-169 (302)
196 TIGR02981 phageshock_pspE phag 33.6 1.1E+02 0.0025 18.5 4.7 32 25-59 57-88 (101)
197 COG4917 EutP Ethanolamine util 33.5 83 0.0018 21.2 3.7 38 34-75 101-138 (148)
198 cd04814 PA_M28_1 PA_M28_1: Pro 33.5 1.2E+02 0.0027 20.0 4.6 40 23-62 45-98 (142)
199 cd04821 PA_M28_1_2 PA_M28_1_2: 33.4 1.3E+02 0.0028 20.2 4.7 39 23-61 47-100 (157)
200 cd01477 vWA_F09G8-8_type VWA F 33.1 74 0.0016 21.7 3.6 34 27-61 133-168 (193)
201 PRK12548 shikimate 5-dehydroge 32.8 1.6E+02 0.0036 21.1 5.5 34 24-61 124-157 (289)
202 PRK11024 colicin uptake protei 32.6 1.4E+02 0.003 19.2 5.6 13 70-82 122-134 (141)
203 PRK00162 glpE thiosulfate sulf 32.3 69 0.0015 19.1 3.0 30 26-58 58-87 (108)
204 PRK11267 biopolymer transport 32.2 1.4E+02 0.0031 19.2 5.5 20 38-57 111-130 (141)
205 PRK05707 DNA polymerase III su 32.1 1.4E+02 0.0029 22.2 5.1 41 24-64 104-145 (328)
206 PF00762 Ferrochelatase: Ferro 32.0 45 0.00097 24.7 2.5 39 39-79 240-278 (316)
207 PRK14582 pgaB outer membrane N 31.8 2.2E+02 0.0048 23.7 6.5 37 24-62 104-141 (671)
208 TIGR00171 leuD 3-isopropylmala 31.8 29 0.00062 24.2 1.3 48 23-70 66-113 (188)
209 PRK01641 leuD isopropylmalate 31.8 35 0.00076 24.0 1.8 45 23-67 64-108 (200)
210 PRK12770 putative glutamate sy 31.8 2E+02 0.0044 20.9 6.2 52 25-80 171-226 (352)
211 PF05378 Hydant_A_N: Hydantoin 31.8 85 0.0018 21.2 3.7 29 40-68 134-162 (176)
212 PRK08762 molybdopterin biosynt 31.7 97 0.0021 23.2 4.3 32 25-59 56-87 (376)
213 PRK15062 hydrogenase isoenzyme 31.5 1.3E+02 0.0027 23.3 4.8 52 26-78 130-182 (364)
214 PRK10773 murF UDP-N-acetylmura 31.4 2.3E+02 0.0051 21.6 6.4 30 28-57 326-356 (453)
215 PRK09989 hypothetical protein; 31.3 39 0.00085 23.5 2.0 16 40-55 40-55 (258)
216 PRK05562 precorrin-2 dehydroge 30.9 1.9E+02 0.004 20.6 5.4 40 17-61 16-55 (223)
217 PRK12549 shikimate 5-dehydroge 30.9 1.5E+02 0.0033 21.4 5.0 34 24-61 125-158 (284)
218 TIGR00070 hisG ATP phosphoribo 30.6 26 0.00057 24.2 1.0 14 31-44 151-164 (182)
219 TIGR01699 XAPA xanthosine phos 30.6 2E+02 0.0042 20.7 5.5 48 19-66 43-95 (248)
220 PF04189 Gcd10p: Gcd10p family 30.6 2.3E+02 0.0049 21.1 6.0 48 22-75 197-245 (299)
221 TIGR01573 cas2 CRISPR-associat 30.4 1.3E+02 0.0028 18.2 4.4 30 28-57 2-33 (95)
222 PF01973 MAF_flag10: Protein o 30.4 64 0.0014 21.1 2.8 44 26-79 24-67 (170)
223 PF09861 DUF2088: Domain of un 30.4 1.9E+02 0.0041 20.1 5.7 36 26-61 55-95 (204)
224 PRK06256 biotin synthase; Vali 30.3 1.2E+02 0.0025 22.1 4.4 54 27-82 109-166 (336)
225 TIGR00423 radical SAM domain p 30.3 1.3E+02 0.0029 21.8 4.7 57 27-83 54-122 (309)
226 PRK05569 flavodoxin; Provision 30.1 1.4E+02 0.0031 18.5 5.9 40 25-64 82-122 (141)
227 PF00910 RNA_helicase: RNA hel 30.0 37 0.0008 20.6 1.5 19 23-41 46-64 (107)
228 cd06259 YdcF-like YdcF-like. Y 29.5 65 0.0014 20.3 2.7 35 27-61 68-102 (150)
229 PF02142 MGS: MGS-like domain 29.2 47 0.001 19.8 1.9 22 35-60 16-37 (95)
230 PRK13583 hisG ATP phosphoribos 29.2 27 0.00058 25.1 0.9 19 32-52 175-193 (228)
231 PRK13584 hisG ATP phosphoribos 29.2 34 0.00074 24.2 1.4 13 32-44 148-160 (204)
232 KOG1481|consensus 29.1 71 0.0015 24.4 3.1 29 36-64 221-249 (391)
233 PF01969 DUF111: Protein of un 29.1 59 0.0013 25.0 2.7 29 32-62 257-285 (382)
234 TIGR00109 hemH ferrochelatase. 28.9 47 0.001 24.5 2.1 37 39-77 245-281 (322)
235 TIGR01372 soxA sarcosine oxida 28.8 1.3E+02 0.0029 25.6 5.0 52 25-80 316-367 (985)
236 PRK06620 hypothetical protein; 28.7 99 0.0022 21.3 3.7 35 26-60 85-120 (214)
237 cd01577 IPMI_Swivel Aconatase- 28.6 39 0.00085 20.9 1.4 34 28-61 19-52 (91)
238 PF03198 Glyco_hydro_72: Gluca 28.6 97 0.0021 23.4 3.7 47 32-79 46-93 (314)
239 COG0683 LivK ABC-type branched 28.4 2.2E+02 0.0048 20.8 5.6 40 22-61 45-86 (366)
240 PF01522 Polysacc_deac_1: Poly 28.4 1.4E+02 0.0029 17.8 4.1 33 27-61 7-39 (123)
241 PRK01686 hisG ATP phosphoribos 28.3 39 0.00085 23.9 1.6 13 32-44 158-170 (215)
242 PF00185 OTCace: Aspartate/orn 28.3 1.1E+02 0.0024 20.1 3.7 37 25-64 1-37 (158)
243 COG2604 Uncharacterized protei 28.2 45 0.00096 27.3 2.0 42 28-79 226-267 (594)
244 PHA00673 acetyltransferase dom 28.2 1.5E+02 0.0033 19.9 4.4 55 25-82 81-144 (154)
245 PF00289 CPSase_L_chain: Carba 28.1 1.2E+02 0.0027 18.8 3.7 26 36-61 8-33 (110)
246 PRK00779 ornithine carbamoyltr 28.1 1.2E+02 0.0026 22.4 4.1 37 21-61 147-183 (304)
247 PF01634 HisG: ATP phosphoribo 27.9 38 0.00083 23.0 1.4 12 33-44 111-122 (163)
248 COG1434 Uncharacterized conser 27.9 1.5E+02 0.0032 19.9 4.3 59 24-83 120-178 (223)
249 PRK11749 dihydropyrimidine deh 27.8 2.7E+02 0.0059 21.1 6.2 52 25-80 272-327 (457)
250 PF02153 PDH: Prephenate dehyd 27.8 1.8E+02 0.0039 20.5 4.9 34 24-57 121-154 (258)
251 TIGR00678 holB DNA polymerase 27.8 1.8E+02 0.0039 19.0 4.8 38 25-62 95-133 (188)
252 TIGR02990 ectoine_eutA ectoine 27.4 50 0.0011 23.5 2.0 43 38-80 104-147 (239)
253 COG2089 SpsE Sialic acid synth 27.4 92 0.002 23.9 3.4 62 5-69 122-187 (347)
254 PRK04284 ornithine carbamoyltr 27.3 1.3E+02 0.0029 22.5 4.3 38 21-61 150-187 (332)
255 PLN02807 diaminohydroxyphospho 27.3 1.3E+02 0.0028 23.0 4.3 51 29-80 98-150 (380)
256 PRK08385 nicotinate-nucleotide 27.3 2E+02 0.0043 21.2 5.1 55 25-82 201-256 (278)
257 PRK08699 DNA polymerase III su 27.2 2.1E+02 0.0045 21.2 5.3 41 24-64 111-152 (325)
258 PRK06756 flavodoxin; Provision 27.1 1.7E+02 0.0037 18.5 5.6 42 23-64 80-126 (148)
259 COG2120 Uncharacterized protei 27.0 78 0.0017 22.3 2.9 39 26-68 10-53 (237)
260 TIGR01082 murC UDP-N-acetylmur 26.8 2.7E+02 0.0059 21.1 6.0 43 17-61 308-351 (448)
261 PF01924 HypD: Hydrogenase for 26.7 81 0.0018 24.2 3.1 52 26-78 125-177 (355)
262 PLN02384 ribose-5-phosphate is 26.5 93 0.002 22.9 3.3 42 35-80 54-99 (264)
263 PLN02398 hydroxyacylglutathion 26.5 1.7E+02 0.0037 21.9 4.8 38 25-67 96-133 (329)
264 PRK09087 hypothetical protein; 26.5 2.2E+02 0.0047 19.8 5.1 49 28-76 89-144 (226)
265 PRK10287 thiosulfate:cyanide s 26.4 1.6E+02 0.0035 18.0 4.8 31 25-58 59-89 (104)
266 PRK13978 ribose-5-phosphate is 26.3 1E+02 0.0022 22.1 3.4 41 36-80 27-70 (228)
267 PRK11439 pphA serine/threonine 26.2 1.7E+02 0.0037 20.0 4.5 27 27-53 46-72 (218)
268 TIGR01698 PUNP purine nucleoti 26.0 2.5E+02 0.0055 20.1 5.7 60 5-64 21-93 (237)
269 PRK00439 leuD 3-isopropylmalat 26.0 54 0.0012 22.2 1.9 44 23-66 45-88 (163)
270 TIGR00075 hypD hydrogenase exp 25.8 1.4E+02 0.0031 23.0 4.3 52 26-78 136-188 (369)
271 cd01530 Cdc25 Cdc25 phosphatas 25.8 1.7E+02 0.0037 18.1 4.1 26 25-52 67-92 (121)
272 COG3680 Uncharacterized protei 25.8 73 0.0016 23.2 2.5 71 13-83 24-101 (259)
273 TIGR03551 F420_cofH 7,8-dideme 25.7 2E+02 0.0044 21.2 5.0 58 26-83 87-156 (343)
274 TIGR01470 cysG_Nterm siroheme 25.4 2.3E+02 0.005 19.4 5.7 34 23-61 6-39 (205)
275 cd03412 CbiK_N Anaerobic cobal 25.3 1E+02 0.0022 19.6 3.0 25 40-64 56-80 (127)
276 PF13241 NAD_binding_7: Putati 25.2 1.6E+02 0.0035 17.6 3.8 35 23-62 4-38 (103)
277 COG1433 Uncharacterized conser 25.1 2E+02 0.0043 18.6 4.6 60 17-81 25-89 (121)
278 PRK11921 metallo-beta-lactamas 25.1 1.6E+02 0.0035 22.1 4.5 54 23-76 330-384 (394)
279 PF13329 ATG2_CAD: Autophagy-r 25.0 1.2E+02 0.0026 20.1 3.4 44 15-58 35-93 (157)
280 cd01576 AcnB_Swivel Aconitase 25.0 54 0.0012 21.6 1.6 47 25-71 49-107 (131)
281 TIGR02804 ExbD_2 TonB system t 25.0 1.8E+02 0.0039 18.1 5.6 13 70-82 103-115 (121)
282 PRK01415 hypothetical protein; 24.9 1.9E+02 0.0042 20.8 4.7 34 24-60 169-202 (247)
283 COG3577 Predicted aspartyl pro 24.9 30 0.00065 24.8 0.5 39 14-55 102-141 (215)
284 cd00532 MGS-like MGS-like doma 24.7 1.7E+02 0.0036 17.9 3.9 38 35-76 28-65 (112)
285 PRK08564 5'-methylthioadenosin 24.7 1.9E+02 0.0041 21.0 4.6 60 5-68 32-98 (267)
286 COG0607 PspE Rhodanese-related 24.5 69 0.0015 18.6 2.0 30 25-57 60-89 (110)
287 cd04725 OMP_decarboxylase_like 24.5 1.4E+02 0.0031 20.6 3.8 37 35-74 58-94 (216)
288 PF00753 Lactamase_B: Metallo- 24.5 1.8E+02 0.0039 17.8 4.3 41 26-66 14-54 (194)
289 COG0120 RpiA Ribose 5-phosphat 24.5 1.1E+02 0.0024 22.0 3.3 40 36-79 26-67 (227)
290 PRK10997 yieM hypothetical pro 24.4 2.5E+02 0.0054 22.5 5.5 49 25-74 416-466 (487)
291 PRK00142 putative rhodanese-re 24.3 1.8E+02 0.004 21.5 4.6 33 24-59 169-201 (314)
292 cd01535 4RHOD_Repeat_4 Member 24.3 2E+02 0.0043 18.5 4.3 32 26-60 49-80 (145)
293 TIGR00658 orni_carb_tr ornithi 24.2 1.6E+02 0.0036 21.6 4.3 37 21-61 143-179 (304)
294 cd00404 Aconitase_swivel Aconi 24.1 73 0.0016 19.5 2.0 36 26-61 15-50 (88)
295 PRK11524 putative methyltransf 24.0 69 0.0015 23.0 2.2 22 27-48 208-229 (284)
296 TIGR02868 CydC thiol reductant 23.9 2.2E+02 0.0047 22.0 5.1 41 24-64 486-528 (529)
297 COG4825 Uncharacterized membra 23.9 1.7E+02 0.0038 22.4 4.3 35 23-57 177-211 (395)
298 PRK05584 5'-methylthioadenosin 23.8 2.4E+02 0.0052 19.1 6.3 48 20-67 34-81 (230)
299 cd03287 ABC_MSH3_euk MutS3 hom 23.6 2.6E+02 0.0057 19.5 5.1 41 24-65 108-154 (222)
300 COG0626 MetC Cystathionine bet 23.6 1.4E+02 0.003 23.2 3.9 31 26-58 102-132 (396)
301 TIGR01694 MTAP 5'-deoxy-5'-met 23.5 1.7E+02 0.0037 20.5 4.1 47 19-68 35-90 (241)
302 PF02702 KdpD: Osmosensitive K 23.5 2E+02 0.0043 20.6 4.4 43 38-84 16-61 (211)
303 TIGR03455 HisG_C-term ATP phos 23.3 1.5E+02 0.0033 18.3 3.4 24 38-61 72-95 (100)
304 PRK00045 hemA glutamyl-tRNA re 23.3 2.7E+02 0.0058 21.2 5.4 36 22-61 178-213 (423)
305 cd03411 Ferrochelatase_N Ferro 23.3 1.2E+02 0.0026 19.9 3.1 30 39-68 98-127 (159)
306 PLN02723 3-mercaptopyruvate su 23.1 1.9E+02 0.0042 21.1 4.5 32 25-59 102-134 (320)
307 smart00481 POLIIIAc DNA polyme 23.1 1.4E+02 0.003 16.3 3.0 44 37-81 12-57 (67)
308 PF13177 DNA_pol3_delta2: DNA 23.0 2.3E+02 0.0049 18.5 5.8 40 25-64 101-141 (162)
309 PTZ00413 lipoate synthase; Pro 22.8 1.3E+02 0.0028 23.5 3.6 49 33-82 205-256 (398)
310 PF04723 GRDA: Glycine reducta 22.8 1.7E+02 0.0037 19.8 3.7 34 24-60 3-37 (150)
311 PRK02122 glucosamine-6-phospha 22.6 96 0.0021 25.5 3.0 36 25-64 368-408 (652)
312 PRK05563 DNA polymerase III su 22.5 1.9E+02 0.0041 23.2 4.6 36 26-62 119-156 (559)
313 KOG0628|consensus 22.4 1.6E+02 0.0034 23.8 4.0 50 28-77 207-257 (511)
314 TIGR03471 HpnJ hopanoid biosyn 22.4 3E+02 0.0065 21.1 5.6 53 27-81 247-300 (472)
315 PRK05452 anaerobic nitric oxid 22.4 2.1E+02 0.0046 22.3 4.8 51 24-74 335-385 (479)
316 COG0040 HisG ATP phosphoribosy 22.3 51 0.0011 24.6 1.3 13 32-44 159-171 (290)
317 cd01644 RT_pepA17 RT_pepA17: R 22.2 48 0.0011 23.0 1.1 30 28-57 137-173 (213)
318 COG5000 NtrY Signal transducti 22.2 71 0.0015 26.7 2.1 34 4-37 438-476 (712)
319 PF13166 AAA_13: AAA domain 22.1 2.3E+02 0.005 22.7 5.0 41 25-66 526-572 (712)
320 PRK07823 5'-methylthioadenosin 22.1 2.6E+02 0.0055 20.4 4.9 57 5-64 29-91 (264)
321 cd01284 Riboflavin_deaminase-r 21.9 2.2E+02 0.0047 17.9 4.0 33 44-76 79-113 (115)
322 cd01521 RHOD_PspE2 Member of t 21.7 1.9E+02 0.0042 17.2 4.2 44 25-79 63-108 (110)
323 PRK08931 5'-methylthioadenosin 21.7 2.5E+02 0.0054 20.8 4.8 56 5-64 28-90 (289)
324 COG1134 TagH ABC-type polysacc 21.6 1.4E+02 0.003 21.9 3.3 37 28-64 167-206 (249)
325 PF07075 DUF1343: Protein of u 21.5 1.3E+02 0.0028 23.1 3.3 53 2-55 54-113 (365)
326 COG1648 CysG Siroheme synthase 21.4 2.6E+02 0.0056 19.5 4.6 37 21-62 7-43 (210)
327 COG3896 Chloramphenicol 3-O-ph 21.3 1.7E+02 0.0037 20.6 3.6 34 29-65 116-149 (205)
328 PRK12550 shikimate 5-dehydroge 21.3 1.6E+02 0.0034 21.3 3.6 32 26-61 122-153 (272)
329 cd04822 PA_M28_1_3 PA_M28_1_3: 21.2 2.6E+02 0.0056 18.7 4.4 39 23-61 45-97 (151)
330 PRK14022 UDP-N-acetylmuramoyla 21.2 3.1E+02 0.0066 21.1 5.4 39 16-56 329-367 (481)
331 PF00571 CBS: CBS domain CBS d 21.2 86 0.0019 16.1 1.8 24 37-60 13-36 (57)
332 TIGR02803 ExbD_1 TonB system t 21.1 2.2E+02 0.0048 17.6 5.6 23 33-55 63-85 (122)
333 PF11181 YflT: Heat induced st 20.9 2.1E+02 0.0046 17.3 3.8 27 35-61 5-33 (103)
334 PRK12810 gltD glutamate syntha 20.8 3.9E+02 0.0085 20.4 6.0 33 24-60 279-311 (471)
335 PF13730 HTH_36: Helix-turn-he 20.8 1.1E+02 0.0023 16.0 2.1 21 34-54 34-54 (55)
336 PRK05642 DNA replication initi 20.8 1.2E+02 0.0025 21.2 2.8 32 24-55 95-132 (234)
337 PF13380 CoA_binding_2: CoA bi 20.7 97 0.0021 19.3 2.2 46 35-82 61-106 (116)
338 TIGR02084 leud 3-isopropylmala 20.6 95 0.002 20.9 2.2 44 23-66 44-87 (156)
339 cd03409 Chelatase_Class_II Cla 20.5 1.9E+02 0.0041 16.7 3.6 27 39-65 44-70 (101)
340 cd02072 Glm_B12_BD B12 binding 20.5 2.6E+02 0.0056 18.2 4.4 56 27-82 51-112 (128)
341 PF02225 PA: PA domain; Inter 20.5 1.9E+02 0.0041 16.6 4.1 35 23-61 31-65 (101)
342 PTZ00441 sporozoite surface pr 20.4 2.4E+02 0.0052 23.1 4.7 34 27-61 151-185 (576)
343 PRK07471 DNA polymerase III su 20.4 2.9E+02 0.0063 20.8 5.0 40 25-64 140-180 (365)
344 PF00455 DeoRC: DeoR C termina 20.3 1.1E+02 0.0025 20.0 2.6 26 24-53 17-42 (161)
345 cd01474 vWA_ATR ATR (Anthrax T 20.3 2.6E+02 0.0057 18.2 4.4 35 27-62 105-142 (185)
346 PRK05481 lipoyl synthase; Prov 20.3 3.5E+02 0.0075 19.6 5.6 56 27-82 98-159 (289)
347 PRK05319 rplD 50S ribosomal pr 20.2 1.7E+02 0.0036 20.5 3.4 32 28-59 121-152 (205)
348 PRK00035 hemH ferrochelatase; 20.2 1.3E+02 0.0029 22.0 3.1 29 40-68 105-133 (333)
349 KOG2836|consensus 20.1 3E+02 0.0065 18.8 4.6 36 24-61 14-49 (173)
350 KOG2977|consensus 20.1 2.4E+02 0.0051 21.5 4.4 33 28-61 106-138 (323)
351 PRK14178 bifunctional 5,10-met 20.0 3.2E+02 0.007 20.1 5.0 30 23-55 149-178 (279)
352 KOG1198|consensus 20.0 3.9E+02 0.0084 20.1 5.9 50 25-82 157-206 (347)
No 1
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=99.89 E-value=1.6e-23 Score=144.60 Aligned_cols=80 Identities=54% Similarity=0.893 Sum_probs=58.8
Q ss_pred CCCCCCcccCCCCCCeeeeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCcC
Q psy15570 3 MDVGVPQHPAKEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 82 (84)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i 82 (84)
....+|...+++...+.++||++||.|+|+|||++||+|+..+++.|+++||++|++++|||+|+++|.++|++++++++
T Consensus 60 ~~~~~~~~~~~e~~~~~vVGDV~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~aTHgvfs~~A~~~l~~s~Id~v 139 (184)
T PF14572_consen 60 SSEEIPEMTPKEKPPMNVVGDVKGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYACATHGVFSGDAPERLEESPIDEV 139 (184)
T ss_dssp ---------------EEEES--TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEEEEEE---TTHHHHHHHSSESEE
T ss_pred ccchhhhcccCcccceEEEEEccCCeEeeecccccchHHHHHHHHHHHHcCCCEEEEEEeCcccCchHHHHHhhcCCeEE
Confidence 45567877888999999999999999999999999999999999999999999999999999999999999999999875
No 2
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=99.81 E-value=3e-20 Score=136.70 Aligned_cols=78 Identities=41% Similarity=0.657 Sum_probs=68.6
Q ss_pred CCCCcc-cCCCC-------CCeeeeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhc
Q psy15570 5 VGVPQH-PAKEK-------PPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEE 76 (84)
Q Consensus 5 ~~~~~~-~~~~~-------~~~~i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~ 76 (84)
+|.|+. ..|++ +..++.|+++||+|+|+||||+||+|+..+++.|+++||++|+++|||++|++++.+++++
T Consensus 185 L~~~~a~i~K~R~~~~~~v~~~~~~gdV~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a~~tH~vfs~~a~~~l~~ 264 (314)
T COG0462 185 LGAPLAIIDKRRDSSPNVVEVMNLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAAATHGVFSGAALERLEA 264 (314)
T ss_pred hCCCEEEEEEeecCCCCeEEEeecccccCCCEEEEEeccccccHHHHHHHHHHHHCCCCeEEEEEEchhhChHHHHHHhc
Confidence 566655 33333 3567889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcC
Q psy15570 77 SPIDEV 82 (84)
Q Consensus 77 ~~i~~i 82 (84)
+.+++|
T Consensus 265 ~~i~~v 270 (314)
T COG0462 265 SAIDEV 270 (314)
T ss_pred CCCCEE
Confidence 988875
No 3
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.78 E-value=3.9e-19 Score=131.03 Aligned_cols=66 Identities=41% Similarity=0.635 Sum_probs=62.5
Q ss_pred CeeeeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCcC
Q psy15570 17 PISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 82 (84)
Q Consensus 17 ~~~i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i 82 (84)
.+.+.|+++||+|+|||||+|||+|+.++++.|+++|++++++++||++|++++.++|.++++++|
T Consensus 208 ~~~~~gdv~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~THgvfs~~a~~~l~~s~i~~i 273 (319)
T PRK04923 208 VMNIIGDVQGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAYITHPVLSGPAVDNINNSQLDEL 273 (319)
T ss_pred EEecccCCCCCEEEEEecccCchHHHHHHHHHHHHCCCCEEEEEEECcccCchHHHHHhhCCCCEE
Confidence 456678999999999999999999999999999999999999999999999999999999999875
No 4
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.78 E-value=3.9e-19 Score=130.89 Aligned_cols=66 Identities=33% Similarity=0.589 Sum_probs=62.5
Q ss_pred CeeeeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCcC
Q psy15570 17 PISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 82 (84)
Q Consensus 17 ~~~i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i 82 (84)
.+.+.|+++||+|+|||||+|||+|+.++++.|++.|+++|++++||++|++++.++|.++++++|
T Consensus 208 ~~~~~gdv~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHglf~~~a~~~l~~~~i~~i 273 (320)
T PRK02269 208 VMNIIGNVKGKKCILIDDMIDTAGTICHAADALAEAGATEVYASCTHPVLSGPALDNIQKSAIEKL 273 (320)
T ss_pred EEEeccccCCCEEEEEeeecCcHHHHHHHHHHHHHCCCCEEEEEEECcccCchHHHHHHhCCCCEE
Confidence 356778999999999999999999999999999999999999999999999999999999999875
No 5
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.78 E-value=5e-19 Score=130.60 Aligned_cols=65 Identities=37% Similarity=0.738 Sum_probs=61.9
Q ss_pred eeeeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCcC
Q psy15570 18 ISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 82 (84)
Q Consensus 18 ~~i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i 82 (84)
..+.|+++||+|+|||||++||+|+..+++.|++.||++|++++||++|++++.++|.++++++|
T Consensus 210 ~~i~gdV~gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgif~~~a~~~l~~s~i~~i 274 (323)
T PRK02458 210 GYIIGDVAGKKAILIDDILNTGKTFAEAAKIVEREGATEIYAVASHGLFAGGAAEVLENAPIKEI 274 (323)
T ss_pred eccccccCCCEEEEEcceeCcHHHHHHHHHHHHhCCCCcEEEEEEChhcCchHHHHHhhCCCCEE
Confidence 45678999999999999999999999999999999999999999999999999999999999875
No 6
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.76 E-value=1.1e-18 Score=133.17 Aligned_cols=66 Identities=42% Similarity=0.649 Sum_probs=63.0
Q ss_pred CeeeeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCcC
Q psy15570 17 PISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 82 (84)
Q Consensus 17 ~~~i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i 82 (84)
.+.+.|+++||+|+|||||+|||+|+..+++.|++.||++|++++||++|+++|.++|.++++++|
T Consensus 326 ~~~lvgdV~Gk~vIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~I 391 (439)
T PTZ00145 326 KMDLVGNVYDSDVIIVDDMIDTSGTLCEAAKQLKKHGARRVFAFATHGLFSGPAIERIEASPLEEV 391 (439)
T ss_pred EEeccCCCCCCEEEEEcceeCcHHHHHHHHHHHHHcCCCEEEEEEEcccCChhHHHHHhcCCCCEE
Confidence 466789999999999999999999999999999999999999999999999999999999999875
No 7
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.74 E-value=5.8e-18 Score=123.85 Aligned_cols=61 Identities=28% Similarity=0.415 Sum_probs=58.4
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCcC
Q psy15570 22 GDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 82 (84)
Q Consensus 22 g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i 82 (84)
++++||+|+||||++|||+|+.++++.|+++||+++++++||++|++++.++|.+++++++
T Consensus 207 ~~v~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgvfs~~a~~~l~~~~i~~i 267 (301)
T PRK07199 207 APWAGRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDCVVVHALFAGDAYSALAAAGIARV 267 (301)
T ss_pred cccCCCEEEEEecccCcHHHHHHHHHHHHHCCCcEEEEEEEeeeCChHHHHHHHhCCCCEE
Confidence 4689999999999999999999999999999999999999999999999999999999875
No 8
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.73 E-value=8.5e-18 Score=124.51 Aligned_cols=68 Identities=40% Similarity=0.638 Sum_probs=62.3
Q ss_pred CCCeeeeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcC----CCCcC
Q psy15570 15 KPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEES----PIDEV 82 (84)
Q Consensus 15 ~~~~~i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~----~i~~i 82 (84)
...+.+.|+++||+|+||||+++||+|+..+++.|++.|++++++++|||+|+++|.++|.++ ++++|
T Consensus 207 ~~~~~~~gdv~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~atHglf~~~a~~~l~~~~~~~~i~~i 278 (332)
T PRK00553 207 AESINVLGEVKNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVMATHGLFNKNAIQLFDEAFKKKLIDKL 278 (332)
T ss_pred EeeEEeeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCcEEEEEEEeeecCchHHHHHHhccccCCCCEE
Confidence 345667889999999999999999999999999999999999999999999999999999765 78875
No 9
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.72 E-value=9.3e-18 Score=122.91 Aligned_cols=65 Identities=40% Similarity=0.590 Sum_probs=61.4
Q ss_pred eeeeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCcC
Q psy15570 18 ISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 82 (84)
Q Consensus 18 ~~i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i 82 (84)
+.+.|+++||+|+|||||++||+|+..+++.|++.|+++++++++|++|++++.++|.+++++++
T Consensus 193 ~~~~~dv~gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~tH~v~~~~a~~~l~~~~~~~i 257 (304)
T PRK03092 193 NRVVGDVEGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHGVLSGPAAERLKNCGAREV 257 (304)
T ss_pred EecCcCCCCCEEEEEccccCcHHHHHHHHHHHHhcCCCeEEEEEEcccCChHHHHHHHHCCCCEE
Confidence 44577899999999999999999999999999999999999999999999999999999999875
No 10
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=99.69 E-value=5.3e-17 Score=120.19 Aligned_cols=63 Identities=24% Similarity=0.394 Sum_probs=59.1
Q ss_pred eeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhc------CCCCcC
Q psy15570 20 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEE------SPIDEV 82 (84)
Q Consensus 20 i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~------~~i~~i 82 (84)
..++++||+|+|+|||+|||+|+..+++.|++.|++++++++||++|++++.++|.+ +++++|
T Consensus 224 ~~~dv~gr~vlIVDDIidTG~Tl~~aa~~L~~~Ga~~V~~~~THglfs~~a~~~l~~~~~~~~~~i~~i 292 (326)
T PLN02297 224 KEGNPAGRHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHGVFPNESWERFTHDNGGPEAGFAYF 292 (326)
T ss_pred cccccCCCeEEEEecccCcHHHHHHHHHHHHHCCCcEEEEEEECcccChhHHHHHHhcccccccCcCEE
Confidence 457899999999999999999999999999999999999999999999999999987 478775
No 11
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.69 E-value=5.5e-17 Score=120.14 Aligned_cols=66 Identities=36% Similarity=0.595 Sum_probs=61.8
Q ss_pred CeeeeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCcC
Q psy15570 17 PISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 82 (84)
Q Consensus 17 ~~~i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i 82 (84)
.+.+.|+++||+|+|+||+++||+|+..+++.|++.|++++++++|||+|++++.++|.++++++|
T Consensus 221 ~~~~~~~v~g~~viiVDDii~TG~T~~~a~~~L~~~Ga~~v~~~~tH~v~s~~a~~~l~~~~id~i 286 (330)
T PRK02812 221 VLNVIGDVKGKTAILVDDMIDTGGTICEGARLLRKEGAKQVYACATHAVFSPPAIERLSSGLFEEV 286 (330)
T ss_pred eEeccccCCCCEEEEEccccCcHHHHHHHHHHHhccCCCeEEEEEEcccCChHHHHHHhhCCCCEE
Confidence 455678899999999999999999999999999999999999999999999999999998888875
No 12
>KOG1448|consensus
Probab=99.68 E-value=8.3e-17 Score=117.81 Aligned_cols=70 Identities=43% Similarity=0.670 Sum_probs=64.3
Q ss_pred CCCCC-CeeeeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCc
Q psy15570 12 AKEKP-PISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDE 81 (84)
Q Consensus 12 ~~~~~-~~~i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~ 81 (84)
+++.. .+.+.||++||.++|||||++|++|+..+++.|.++||++|++++||++|++++.+++.++.+++
T Consensus 199 ~~~v~~~m~LVGDv~gkvailVDDm~dt~GTl~~aa~~L~~~GA~kV~a~~THgVfs~~a~er~~~s~~~~ 269 (316)
T KOG1448|consen 199 ANEVDIRMVLVGDVKGKVAILVDDMADTCGTLIKAADKLLEHGAKKVYAIVTHGVFSGPAIERLNESALDR 269 (316)
T ss_pred ccccceEEEEEeccCCcEEEEecccccccchHHHHHHHHHhcCCceEEEEEcceeccccHHHHhhhcccce
Confidence 34444 67889999999999999999999999999999999999999999999999999999999986654
No 13
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=99.68 E-value=8.7e-17 Score=117.72 Aligned_cols=66 Identities=38% Similarity=0.606 Sum_probs=61.4
Q ss_pred CeeeeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCcC
Q psy15570 17 PISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 82 (84)
Q Consensus 17 ~~~i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i 82 (84)
.+.+.|+++||+|+|+||+++||+|+..+++.|++.|++++++++||++|++++.++|.+++++++
T Consensus 193 ~~~~~~~v~g~~viivDDii~TG~Tl~~a~~~l~~~Ga~~v~~~~tH~v~~~~a~~~l~~~~~~~i 258 (302)
T PLN02369 193 VMNLIGDVKGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACATHAVFSPPAIERLSSGLFQEV 258 (302)
T ss_pred eEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHhCCCCEEEEEEEeeeeCHHHHHHHHhCCCCEE
Confidence 345678899999999999999999999999999999999999999999999999999999888764
No 14
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.66 E-value=2.1e-16 Score=114.66 Aligned_cols=61 Identities=34% Similarity=0.571 Sum_probs=58.4
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCcC
Q psy15570 22 GDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 82 (84)
Q Consensus 22 g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i 82 (84)
++++||+|+|+||++|||+|+..+++.|+++|+++++++++|++|++++.++|.+++++++
T Consensus 200 ~~v~Gk~VlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~~H~i~~~~a~~~l~~~~i~~i 260 (285)
T PRK00934 200 LDVKGKDVLIVDDIISTGGTMATAIKILKEQGAKKVYVACVHPVLVGDAILKLYNAGVDEI 260 (285)
T ss_pred cccCCCEEEEEcCccccHHHHHHHHHHHHHCCCCEEEEEEEeeccCcHHHHHHHhCCCCEE
Confidence 4789999999999999999999999999999999999999999999999999999998875
No 15
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.66 E-value=2.3e-16 Score=115.73 Aligned_cols=66 Identities=48% Similarity=0.711 Sum_probs=61.1
Q ss_pred CeeeeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCcC
Q psy15570 17 PISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 82 (84)
Q Consensus 17 ~~~i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i 82 (84)
.+.+.|+++||+|+|+||+++||+|+..+++.|+++|+++++++++|++|++++.+++.+++++++
T Consensus 199 ~~~~~~~~~g~~vliVDDii~TG~T~~~a~~~l~~~Ga~~v~~~~tH~i~~~~a~~~l~~~~~~~i 264 (309)
T PRK01259 199 VMNIIGDVEGRDCILVDDMIDTAGTLCKAAEALKERGAKSVYAYATHPVLSGGAIERIENSVIDEL 264 (309)
T ss_pred EEeecccCCCCEEEEEecccCcHHHHHHHHHHHHccCCCEEEEEEEeeeCChHHHHHHhcCCCCEE
Confidence 345667899999999999999999999999999999999999999999999999999998888764
No 16
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.65 E-value=3.7e-16 Score=117.72 Aligned_cols=63 Identities=37% Similarity=0.565 Sum_probs=57.3
Q ss_pred eeec-cCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcC----CCCcC
Q psy15570 19 SVVG-DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEES----PIDEV 82 (84)
Q Consensus 19 ~i~g-~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~----~i~~i 82 (84)
.+.| +++||+|+|+|||++||+|+..+++.|+++|+++++++++|++|+ +|.++|.++ ++++|
T Consensus 256 ~~~g~dV~gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~~~~~~g~i~~i 323 (382)
T PRK06827 256 EFLGRDVEGKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFDKAYEEGYFDRI 323 (382)
T ss_pred ecCCcccCCCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHHhhcccCCCCEE
Confidence 4567 899999999999999999999999999999999999999999999 999999754 47664
No 17
>KOG1503|consensus
Probab=99.65 E-value=4.5e-16 Score=112.54 Aligned_cols=82 Identities=74% Similarity=1.154 Sum_probs=79.7
Q ss_pred CCCCCCCCcccCCCCCCeeeeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCC
Q psy15570 1 MEMDVGVPQHPAKEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPID 80 (84)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~ 80 (84)
.|+++++|...+++++...+.||+.|+-.+++||+|+.-.++.++++.|+++||-++++++||+++|.+|..+|++|+++
T Consensus 222 ~~~~~~lp~~~~k~kppltvvgdvggriaimvddiiddvqsfvaaae~lkergaykiyv~athgllssdapr~lees~id 301 (354)
T KOG1503|consen 222 THPSLELPAQISKEKPPLTVVGDVGGRIAIMVDDIIDDVQSFVAAAEVLKERGAYKIYVMATHGLLSSDAPRLLEESPID 301 (354)
T ss_pred cCccccCchhhcccCCCeEEEeccCceEEEEehhhHHhHHHHHHHHHHHHhcCceEEEEEeecccccccchhhhhcCCCc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q psy15570 81 EV 82 (84)
Q Consensus 81 ~i 82 (84)
|+
T Consensus 302 ev 303 (354)
T KOG1503|consen 302 EV 303 (354)
T ss_pred eE
Confidence 85
No 18
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=99.57 E-value=6.3e-15 Score=107.86 Aligned_cols=63 Identities=40% Similarity=0.617 Sum_probs=59.3
Q ss_pred eeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCcC
Q psy15570 20 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 82 (84)
Q Consensus 20 i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i 82 (84)
+.++++||+|+|+||+++||+|+..+++.|++.|+++++++++|++|++++.++|.+++++++
T Consensus 204 ~~~~v~g~~vliVDDii~tG~Tl~~a~~~l~~~ga~~v~~~~th~v~~~~a~~~l~~~~~~~i 266 (308)
T TIGR01251 204 LVGDVEGKDVVIVDDIIDTGGTIAKAAEILKSAGAKRVIAAATHGVFSGPAIERIANAGVEEV 266 (308)
T ss_pred cccccCCCEEEEEccccCCHHHHHHHHHHHHhcCCCEEEEEEEeeecCcHHHHHHHhCCCCEE
Confidence 456789999999999999999999999999999999999999999999999999999988764
No 19
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.51 E-value=3.4e-14 Score=108.56 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=56.7
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCcC
Q psy15570 24 VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 82 (84)
Q Consensus 24 v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i 82 (84)
++||+|+||||+++||+|+.++++.|+++||++|+++++||+|..++...|..+++++|
T Consensus 338 v~gK~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~~~hp~~~~~~~~~i~~~~~~~l 396 (445)
T PRK08525 338 LEGKRIVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLRIACPEIKFPCYYGIDTPTFEEL 396 (445)
T ss_pred cCCCeEEEEecccCcHHHHHHHHHHHHhcCCCEEEEEEECCCcCCchhhhCcCCChhhE
Confidence 78999999999999999999999999999999999999999999999999988888765
No 20
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.38 E-value=9.4e-13 Score=101.29 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=56.3
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCcC
Q psy15570 22 GDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 82 (84)
Q Consensus 22 g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i 82 (84)
+.++||+|+||||+++||+|+.++++.|+++||++|+++++||.+..++...|..+..++|
T Consensus 349 ~~v~gk~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~~~p~~~~p~~~gid~~~~~el 409 (469)
T PRK05793 349 VNVEGKRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRVSSPPVKYPCYFGIDTPYRKEL 409 (469)
T ss_pred cccCCCEEEEEccccCchHHHHHHHHHHHHcCCCEEEEEEECCCcCcchhhhccCCChhhE
Confidence 4579999999999999999999999999999999999999999999999998877766654
No 21
>PLN02293 adenine phosphoribosyltransferase
Probab=99.33 E-value=5.4e-12 Score=87.14 Aligned_cols=59 Identities=22% Similarity=0.301 Sum_probs=53.9
Q ss_pred ccC-CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCC
Q psy15570 22 GDV-GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPID 80 (84)
Q Consensus 22 g~v-~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~ 80 (84)
+.+ +|++|+||||+++||+|+.++++.+++.|+..+.++++|.+...++.+++.+.++.
T Consensus 120 ~~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~v~~~~~~~~~~~~g~~~l~~~~~~ 179 (187)
T PLN02293 120 GAVEPGERALVIDDLIATGGTLCAAINLLERAGAEVVECACVIELPELKGREKLNGKPLF 179 (187)
T ss_pred CccCCCCEEEEEeccccchHHHHHHHHHHHHCCCEEEEEEEEEEcCCccHHHHhcCCceE
Confidence 556 69999999999999999999999999999999999999999888999999876643
No 22
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=99.27 E-value=2.9e-11 Score=82.11 Aligned_cols=75 Identities=27% Similarity=0.278 Sum_probs=58.6
Q ss_pred CCCCcc-cCCCC---C-CeeeeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCC
Q psy15570 5 VGVPQH-PAKEK---P-PISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPI 79 (84)
Q Consensus 5 ~~~~~~-~~~~~---~-~~~i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i 79 (84)
+|+|+. .+++. . ...+.|+++|++|+||||+++||+|+..+++.|++.|++.+.+++....- ..+.+++++.++
T Consensus 78 l~~p~~~~rK~~k~~g~~~~~~g~~~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~~vdr~-~g~~~~l~~~gv 156 (170)
T PRK13811 78 AGKPYAIIRKEAKDHGKAGLIIGDVKGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVTVVDRE-QGAEELLAELGI 156 (170)
T ss_pred HCCCEEEEecCCCCCCCcceEEcccCCCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEEEEECC-ccHHHHHHhcCC
Confidence 577866 44432 2 23456789999999999999999999999999999999998888866643 356788877766
Q ss_pred C
Q psy15570 80 D 80 (84)
Q Consensus 80 ~ 80 (84)
.
T Consensus 157 ~ 157 (170)
T PRK13811 157 T 157 (170)
T ss_pred c
Confidence 4
No 23
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=99.27 E-value=9.1e-12 Score=85.37 Aligned_cols=49 Identities=22% Similarity=0.321 Sum_probs=43.1
Q ss_pred CCCCeeeecc-CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEE
Q psy15570 14 EKPPISVVGD-VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 14 ~~~~~~i~g~-v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~ 62 (84)
-.+.|.+.++ ++|++|+|||||+|||.|+.++++.|++.|+.+|.+++.
T Consensus 139 ~~~~f~~~~~~~~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~~l 188 (190)
T TIGR00201 139 LENAFDLKNNSFQGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVWTL 188 (190)
T ss_pred HhCcEEccCCCCCCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEE
Confidence 3456777654 789999999999999999999999999999999998873
No 24
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=99.26 E-value=3.4e-11 Score=82.39 Aligned_cols=76 Identities=22% Similarity=0.333 Sum_probs=58.2
Q ss_pred CCCCCcc-cCCCCCCe----eeeccC-CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcC
Q psy15570 4 DVGVPQH-PAKEKPPI----SVVGDV-GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEES 77 (84)
Q Consensus 4 ~~~~~~~-~~~~~~~~----~i~g~v-~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~ 77 (84)
.+|+|+. .+++.+.+ .+.|.+ +|++|+||||+++||+|+.++++.+++.|++.+.+++.... ..++.+++++.
T Consensus 79 ~l~~p~~~~rk~~k~yg~~~~~~g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~vv~~~vlvdr-~~~~~~~l~~~ 157 (176)
T PRK13812 79 ETGVPYVIARKQAKEYGTGNRIEGRLDEGEEVVVLEDIATTGQSAVDAVEALREAGATVNRVLVVVDR-EEGARENLADH 157 (176)
T ss_pred HHCCCEEEEeccCCcCCCCCeEEecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeEEEEEEEEEC-CcchHHHHHhc
Confidence 3578866 55544332 345666 79999999999999999999999999999998888875443 24667888877
Q ss_pred CCC
Q psy15570 78 PID 80 (84)
Q Consensus 78 ~i~ 80 (84)
|+.
T Consensus 158 g~~ 160 (176)
T PRK13812 158 DVE 160 (176)
T ss_pred CCc
Confidence 753
No 25
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=99.24 E-value=5.1e-11 Score=83.47 Aligned_cols=74 Identities=23% Similarity=0.252 Sum_probs=57.1
Q ss_pred CCCCcc-cCCCCCC------eeeecc-CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhc
Q psy15570 5 VGVPQH-PAKEKPP------ISVVGD-VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEE 76 (84)
Q Consensus 5 ~~~~~~-~~~~~~~------~~i~g~-v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~ 76 (84)
+|+|+. .+++.+. +.+.|. .+|++|+||||++|||+|+.++++.|++.|+..+.+++.... ..++.+++.+
T Consensus 89 l~~p~~~~RK~~K~~G~~~~~~~~g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vlvdr-~~~~~~~l~~ 167 (206)
T PRK13809 89 YNIPMVLRRKELKNVDPSDAIKVEGLFTPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVFLDR-QKGACQPLGP 167 (206)
T ss_pred hCCCEEEEeCCCCCCCCcCEEEEccccCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEEC-cccHHHHHHh
Confidence 578877 5554433 334554 479999999999999999999999999999998888886553 2467888877
Q ss_pred CCC
Q psy15570 77 SPI 79 (84)
Q Consensus 77 ~~i 79 (84)
.|+
T Consensus 168 ~gi 170 (206)
T PRK13809 168 QGI 170 (206)
T ss_pred cCC
Confidence 665
No 26
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=99.24 E-value=2.3e-11 Score=84.83 Aligned_cols=57 Identities=33% Similarity=0.438 Sum_probs=51.7
Q ss_pred eeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCC
Q psy15570 20 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESP 78 (84)
Q Consensus 20 i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~ 78 (84)
+.++++|++|+|+|||++||+|+..+++.|+++|+++++++++ ++++++++++.++.
T Consensus 118 lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~~~~l--l~~~~gl~~l~~~~ 174 (209)
T PRK00129 118 LPEDIDERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIKVLCL--VAAPEGIKALEEAH 174 (209)
T ss_pred CCCcCCCCEEEEECCcccchHHHHHHHHHHHHcCCCEEEEEEE--ecCHHHHHHHHHHC
Confidence 4557899999999999999999999999999999999999997 77889999998753
No 27
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=99.23 E-value=3.1e-11 Score=76.15 Aligned_cols=42 Identities=31% Similarity=0.457 Sum_probs=39.0
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEe
Q psy15570 22 GDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATH 63 (84)
Q Consensus 22 g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h 63 (84)
..++||+|+||||+++||+|+..+++.|+++|++++.+++.|
T Consensus 84 ~~~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~~vl~ 125 (125)
T PF00156_consen 84 EDIKGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGVAVLV 125 (125)
T ss_dssp SSGTTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEEEEEE
T ss_pred ccccceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 357899999999999999999999999999999999998864
No 28
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=99.23 E-value=3.9e-11 Score=81.31 Aligned_cols=58 Identities=21% Similarity=0.211 Sum_probs=47.4
Q ss_pred eeeecc--CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhh
Q psy15570 18 ISVVGD--VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIE 75 (84)
Q Consensus 18 ~~i~g~--v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~ 75 (84)
+.+.++ .+|++|+||||+++||+|+.++++.|+++|++.+.+++.+......+.+++.
T Consensus 104 l~l~~~~~~~g~~VLIVDDivtTG~Tl~~~~~~l~~~Ga~~v~v~vl~~~~~~~g~~~l~ 163 (175)
T PRK02304 104 LEIHKDAIKPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFVIELPDLGGREKLE 163 (175)
T ss_pred EEEchhhcCCCCEEEEEeCCccccHHHHHHHHHHHHcCCEEEEEEEEEEcccccchhhcC
Confidence 334443 6899999999999999999999999999999999988876654344666665
No 29
>PRK11595 DNA utilization protein GntX; Provisional
Probab=99.22 E-value=1.7e-11 Score=86.22 Aligned_cols=48 Identities=25% Similarity=0.286 Sum_probs=43.2
Q ss_pred CCCeeeeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEE
Q psy15570 15 KPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 15 ~~~~~i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~ 62 (84)
...|.+.++++|++|+||||++|||.|+.++++.|++.|+++|++++.
T Consensus 176 ~~~f~~~~~~~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~~~V~~~~l 223 (227)
T PRK11595 176 KNAFRLELPVQGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASVQVWCL 223 (227)
T ss_pred hhhhccCCCCCCCEEEEEeeeecchHHHHHHHHHHHHcCCcEEEEEEE
Confidence 345666778899999999999999999999999999999999998873
No 30
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=99.19 E-value=4.3e-11 Score=83.42 Aligned_cols=56 Identities=30% Similarity=0.465 Sum_probs=50.2
Q ss_pred eeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcC
Q psy15570 20 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEES 77 (84)
Q Consensus 20 i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~ 77 (84)
+..+++|++|+|+|||++||+|+..+++.|+++|++++++++. ++++++++++.+.
T Consensus 116 lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~v~~l--l~~~~gl~~l~~~ 171 (207)
T TIGR01091 116 LPEDIDERTVIVLDPMLATGGTMIAALDLLKKRGAKKIKVLSI--VAAPEGIEAVEKA 171 (207)
T ss_pred CCCCCCCCEEEEECCCccchHHHHHHHHHHHHcCCCEEEEEEE--ecCHHHHHHHHHH
Confidence 3457899999999999999999999999999999999999987 7788999998763
No 31
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.17 E-value=6.9e-11 Score=80.87 Aligned_cols=41 Identities=27% Similarity=0.502 Sum_probs=38.7
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEE
Q psy15570 22 GDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 22 g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~ 62 (84)
++++||+|+||||++|||.|+.++++.|++.|++++++++.
T Consensus 93 ~~v~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga~~V~~avL 133 (181)
T PRK09162 93 ESLKGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSAVL 133 (181)
T ss_pred CCCCCCEEEEEccccCcHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 46889999999999999999999999999999999999984
No 32
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=99.16 E-value=1e-10 Score=78.90 Aligned_cols=53 Identities=17% Similarity=0.190 Sum_probs=46.7
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhc
Q psy15570 24 VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEE 76 (84)
Q Consensus 24 v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~ 76 (84)
.+||+|+||||++|||+|+.++++.|+++|++.+.+++....-+.++.+.+.+
T Consensus 107 ~~gk~VLIVDDIitTG~Tl~~a~~~L~~~Ga~~v~~~~l~~~~~~~g~~~i~~ 159 (169)
T TIGR01090 107 KPGQRVLIVDDLLATGGTAEATDELIRKLGGEVVEAAFLIELKDLNGRAKLEP 159 (169)
T ss_pred CCcCEEEEEeccccchHHHHHHHHHHHHcCCEEEEEEEEEEccccChHHHhcc
Confidence 48999999999999999999999999999999988888766555577888865
No 33
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=99.16 E-value=7.9e-11 Score=83.30 Aligned_cols=52 Identities=21% Similarity=0.374 Sum_probs=46.3
Q ss_pred cCCCCCCeeeeccCCC-CEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEE
Q psy15570 11 PAKEKPPISVVGDVGG-RVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 11 ~~~~~~~~~i~g~v~g-k~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~ 62 (84)
..|....|.+.+.... ++|+||||++|||.|+.++.+.|++.|+++|++++.
T Consensus 168 r~nl~~aF~~~~~~~~~~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~~l 220 (225)
T COG1040 168 RRNLKGAFRLKKGIEEPKNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVLTL 220 (225)
T ss_pred HHhccCCeecCCCCCCCCeEEEEecccccHHHHHHHHHHHHHcCCceEEEEEE
Confidence 4566678888887766 999999999999999999999999999999999884
No 34
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=99.15 E-value=2.4e-10 Score=79.00 Aligned_cols=75 Identities=25% Similarity=0.373 Sum_probs=58.8
Q ss_pred CCCCcc-cCCCCCCe----eeeccC-CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCC
Q psy15570 5 VGVPQH-PAKEKPPI----SVVGDV-GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESP 78 (84)
Q Consensus 5 ~~~~~~-~~~~~~~~----~i~g~v-~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~ 78 (84)
+|+|+. .+++.+.+ .+.|.+ +|++|+||||+++||+|+.++++.+++.|+..+.+++.... ..++.++|++.|
T Consensus 95 l~~p~v~vRK~~k~~g~~~~~~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vlvdr-~~g~~~~l~~~g 173 (187)
T PRK13810 95 TGLPLLIVRKSVKDYGTGSRFVGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVVDR-EEGAEENLKEAD 173 (187)
T ss_pred hCCCEEEEecCCCccCCCceEEccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEEEEC-CcChHHHHHHcC
Confidence 578877 55554332 345554 69999999999999999999999999999998888886664 357888998877
Q ss_pred CC
Q psy15570 79 ID 80 (84)
Q Consensus 79 i~ 80 (84)
++
T Consensus 174 i~ 175 (187)
T PRK13810 174 VE 175 (187)
T ss_pred Cc
Confidence 64
No 35
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=99.11 E-value=1.1e-10 Score=81.03 Aligned_cols=52 Identities=21% Similarity=0.359 Sum_probs=43.9
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhc
Q psy15570 22 GDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEE 76 (84)
Q Consensus 22 g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~ 76 (84)
+.++|++|+||||++|||+|+.++++.|+++|++.+.+++. +..++.+++..
T Consensus 136 ~~~~gk~VlIVDDVitTG~Tl~~ai~~l~~~Ga~~v~v~vl---vdk~g~~~~~~ 187 (200)
T PRK02277 136 ASVEGKRCVIVDDVITSGTTMKETIEYLKEHGGKPVAVVVL---IDKSGIDEIDG 187 (200)
T ss_pred ccCCcCEEEEEeeccCchHHHHHHHHHHHHcCCEEEEEEEE---EECcchhhhcC
Confidence 34689999999999999999999999999999999998884 44555655543
No 36
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.10 E-value=2.3e-10 Score=77.43 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=39.0
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEe
Q psy15570 22 GDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATH 63 (84)
Q Consensus 22 g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h 63 (84)
++++||+|+|+|||++||+|+.++++.|++.|++++++++.+
T Consensus 80 ~~~~gk~vlivDDii~TG~Tl~~~~~~l~~~g~~~i~~~~l~ 121 (166)
T TIGR01203 80 LSIKGKDVLIVEDIVDTGLTLQYLLDLLKARKPKSLKIVTLL 121 (166)
T ss_pred CCCCCCEEEEEeeeeCcHHHHHHHHHHHHHCCCCEEEEEEEE
Confidence 467899999999999999999999999999999999999853
No 37
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=99.10 E-value=2.8e-10 Score=77.34 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=39.2
Q ss_pred eeccCCCCEEEEEeccccchHHHHHHHHHHHHcC-CCeEEEEEE
Q psy15570 20 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRG-AYKIYVLAT 62 (84)
Q Consensus 20 i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~g-a~~v~~~~~ 62 (84)
+.++++||+|+||||++|||+|+..+++.|++.| ++++++++.
T Consensus 89 l~~~v~gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~~~v~~avL 132 (176)
T PRK05205 89 IPFDIEGKRVILVDDVLYTGRTIRAALDALFDYGRPARVQLAVL 132 (176)
T ss_pred CCCCCCCCEEEEEecccCcHHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 4457899999999999999999999999999999 788988885
No 38
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=99.08 E-value=8e-10 Score=76.17 Aligned_cols=57 Identities=12% Similarity=0.169 Sum_probs=46.4
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHh-hcCCC
Q psy15570 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLI-EESPI 79 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l-~~~~i 79 (84)
..+|++|+||||+++||+|+..+++.++++|+..+.+++.......++.+.+ ++.++
T Consensus 111 ~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~vvd~~~~~g~~~l~~~~gv 168 (187)
T PRK12560 111 IEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVICVIEKTQNNGRKKLFTQTGI 168 (187)
T ss_pred CCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEEecccchHHHHhhccCC
Confidence 4579999999999999999999999999999998888886554333567777 33454
No 39
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.08 E-value=1.9e-10 Score=89.08 Aligned_cols=58 Identities=26% Similarity=0.257 Sum_probs=50.4
Q ss_pred Ceee-eccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHh
Q psy15570 17 PISV-VGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLI 74 (84)
Q Consensus 17 ~~~i-~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l 74 (84)
.|+. ...++||+|+||||+++||+|+.++++.|+++|++++.++++||.+..++.=-|
T Consensus 340 ~f~~~~~~~~gk~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~~~p~~~~~c~ygi 398 (484)
T PRK07272 340 KLSAVSGVVKGKRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAIASPELKYPCFYGI 398 (484)
T ss_pred CccccccccCCCEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEEeCCccccChhhhc
Confidence 4543 456889999999999999999999999999999999999999998887765444
No 40
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=99.07 E-value=9.6e-10 Score=74.60 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=48.3
Q ss_pred eeccC-CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcC-CC
Q psy15570 20 VVGDV-GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEES-PI 79 (84)
Q Consensus 20 i~g~v-~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~-~i 79 (84)
+.|.+ +|++|+||||+++||+|+..+++.|+++|++.+.+++....-..++.+++.+. ++
T Consensus 101 ~~g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~~~~vlvdr~~~~~~~~l~~~~gv 162 (173)
T TIGR00336 101 IEGELLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQVAGVIIAVDRQERSAGQEFEKEYGL 162 (173)
T ss_pred eecCCCCCCEEEEEeccccChHHHHHHHHHHHHcCCeEEEEEEEEecCchhHHHHHHHhcCC
Confidence 44555 79999999999999999999999999999998888886553332577788654 54
No 41
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=99.03 E-value=1.7e-09 Score=74.83 Aligned_cols=74 Identities=20% Similarity=0.259 Sum_probs=54.0
Q ss_pred CCCCcc-cCCCCC----Ceeeecc-CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCC
Q psy15570 5 VGVPQH-PAKEKP----PISVVGD-VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESP 78 (84)
Q Consensus 5 ~~~~~~-~~~~~~----~~~i~g~-v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~ 78 (84)
+|+|+. .++... ...+.+. ..|++|+||||+++||+|+..+++.|++.|++.+.+++....- ..+.+++++.+
T Consensus 86 L~~~~~~~rk~~~~~g~~~~~~~~~~~g~~VliVDDvi~tG~Tl~~~~~~l~~~Ga~~v~~~vlv~~~-~~~~~~~~~~g 164 (202)
T PRK00455 86 LDLPAIFVRKEAKDHGEGGQIEGRRLFGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAVIVDRQ-SAAQEVFADAG 164 (202)
T ss_pred hCCCEEEEecccCCCCCCceEEccCCCCCEEEEEecccCCcHHHHHHHHHHHHcCCEEEEEEEEEECc-chHHHHHHhcC
Confidence 577755 333322 2234443 5799999999999999999999999999999999988865532 34556666656
Q ss_pred C
Q psy15570 79 I 79 (84)
Q Consensus 79 i 79 (84)
+
T Consensus 165 ~ 165 (202)
T PRK00455 165 V 165 (202)
T ss_pred C
Confidence 5
No 42
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=99.02 E-value=4.5e-10 Score=77.54 Aligned_cols=49 Identities=33% Similarity=0.424 Sum_probs=42.5
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHH
Q psy15570 22 GDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLL 73 (84)
Q Consensus 22 g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~ 73 (84)
.+++||+|+||||++|||.|+..+++.|++.|++++.+++ ++..+..+.
T Consensus 93 ~~v~gk~VliVDDIidTG~Tl~~~~~~l~~~g~~~v~~av---L~dK~~~r~ 141 (189)
T PLN02238 93 IDVKGKHVLLVEDIVDTGNTLSALVAHLEAKGAASVSVCA---LLDKRARRK 141 (189)
T ss_pred CCCCCCEEEEEecccchHHHHHHHHHHHHhCCCCEEEEEE---EEECCcccc
Confidence 3589999999999999999999999999999999999998 555554333
No 43
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.02 E-value=7e-10 Score=85.80 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=50.2
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE-----EeccCCC---CHHHHhhcCC
Q psy15570 24 VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA-----THGLLSS---DAPLLIEESP 78 (84)
Q Consensus 24 v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~-----~h~~~s~---~a~~~l~~~~ 78 (84)
++||+|+||||+++||+|+..+++.|+++||++|++++ +|+.|.+ ++.++|..+.
T Consensus 358 ~~gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v~~~~~~p~~~~~~~~gid~~~~~~l~~~~ 420 (479)
T PRK09123 358 IEGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRIASPPITHPCFYGIDTPERSKLLAAT 420 (479)
T ss_pred cCCCEEEEEeceeCchHHHHHHHHHHHHcCCCEEEEEEcCCCCccceeecCCCCCHHHHHHcC
Confidence 68999999999999999999999999999999999999 8999998 8888775543
No 44
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=99.00 E-value=6.1e-10 Score=75.99 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=37.2
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEE
Q psy15570 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~ 62 (84)
.++|++|+||||+++||+|+.++++.|++.|++.+.+++.
T Consensus 117 ~~~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~~~~v 156 (178)
T PRK07322 117 KLKGKRVAIVDDVVSTGGTLTALERLVERAGGQVVAKAAI 156 (178)
T ss_pred ccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEE
Confidence 3679999999999999999999999999999999888875
No 45
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=98.96 E-value=1.8e-09 Score=74.08 Aligned_cols=40 Identities=20% Similarity=0.419 Sum_probs=37.9
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEE
Q psy15570 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~ 62 (84)
+++||+|+||||+++||.|+..+.+.+++.|++++++++.
T Consensus 89 ~v~gk~VLlVDDIiDTG~TL~~l~~~l~~~~~~~v~~avL 128 (178)
T PRK15423 89 DIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTL 128 (178)
T ss_pred CCCCCEEEEEeeecCchHHHHHHHHHHHhCCCCEEEEEEE
Confidence 6889999999999999999999999999999999998883
No 46
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=98.95 E-value=2.7e-09 Score=73.56 Aligned_cols=60 Identities=15% Similarity=0.192 Sum_probs=45.6
Q ss_pred CCCCcc-cCCCCCCeeeec--c-CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEec
Q psy15570 5 VGVPQH-PAKEKPPISVVG--D-VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHG 64 (84)
Q Consensus 5 ~~~~~~-~~~~~~~~~i~g--~-v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~ 64 (84)
+|+|+. .+++.+...+.. . .+|++|+||||+++||+|+..+++.++++|++.+.+++...
T Consensus 80 L~~~~i~~~k~~~~~~~~~~~~l~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga~vv~~~vlid 143 (187)
T TIGR01367 80 LSVRSIFAEREGGGMKLRRGFAVKPGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVVGLACIID 143 (187)
T ss_pred hCCCeEEEEEeCCcEEEeecccCCCCCEEEEEEeeecchHHHHHHHHHHHHcCCeEEEEEEEEE
Confidence 456644 333334444432 2 37999999999999999999999999999999998888543
No 47
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=98.93 E-value=3.5e-09 Score=73.35 Aligned_cols=55 Identities=11% Similarity=0.050 Sum_probs=46.8
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCC
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPI 79 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i 79 (84)
+|++|+||||+++||+|+.++++.++++|+..+.+++....-..++.++|++.++
T Consensus 116 ~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~lvd~~~~~g~~~l~~~gv 170 (191)
T TIGR01744 116 DQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEKSFQNGRQELVELGY 170 (191)
T ss_pred CcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEEEEecCccHHHHHHhcCC
Confidence 6999999999999999999999999999999888888655433467888877654
No 48
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=98.93 E-value=1.9e-09 Score=75.87 Aligned_cols=46 Identities=17% Similarity=0.297 Sum_probs=41.0
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCH
Q psy15570 22 GDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDA 70 (84)
Q Consensus 22 g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a 70 (84)
.+++||+||||||+++||.|+..+.+.|+++++++++.++ ++..+.
T Consensus 114 ~~i~gk~VLIVDDIvDTG~TL~~v~~~l~~~~p~svk~av---L~dK~~ 159 (211)
T PTZ00271 114 DSVENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVV---LLDKPS 159 (211)
T ss_pred CCCCCCEEEEEecccCCHHHHHHHHHHHHhcCCCEEEEEE---EEEccc
Confidence 3688999999999999999999999999999999999998 455543
No 49
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=98.92 E-value=2.3e-09 Score=83.25 Aligned_cols=43 Identities=19% Similarity=0.348 Sum_probs=39.4
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEec
Q psy15570 22 GDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHG 64 (84)
Q Consensus 22 g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~ 64 (84)
..++||+|+||||++|||+|+.++++.|+++||++|+++++-+
T Consensus 354 ~~v~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~ap 396 (501)
T PRK09246 354 AEFKGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASAAP 396 (501)
T ss_pred ccccCCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEEcc
Confidence 4578999999999999999999999999999999999888644
No 50
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=98.90 E-value=2.6e-09 Score=76.61 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=38.0
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEE
Q psy15570 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~ 62 (84)
+++||+|+||||+++||.|+..+++.|++.|++++++++.
T Consensus 147 ~l~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~~~V~va~L 186 (241)
T PTZ00149 147 CLKDKHVLIVEDIIDTGNTLVKFCEYLKKFEPKTIRIATL 186 (241)
T ss_pred ccCCCEEEEEEeEeChHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 5789999999999999999999999999999999999984
No 51
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=98.89 E-value=5.7e-09 Score=72.25 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=45.4
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCC
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPI 79 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i 79 (84)
+|++|+||||+++||+|+.++++.+++.|+..+.+++.......++.+++.+.++
T Consensus 116 ~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvgv~~lvd~~~~~g~~~l~~~g~ 170 (189)
T PRK09219 116 EGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIGIVIEKSFQDGRKLLEEKGY 170 (189)
T ss_pred CCCEEEEEeehhhcChHHHHHHHHHHHCCCEEEEEEEEEEccCccHHHHHHhcCC
Confidence 6999999999999999999999999999999888777544323357788766554
No 52
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=98.89 E-value=1.9e-09 Score=74.72 Aligned_cols=55 Identities=25% Similarity=0.433 Sum_probs=46.3
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCC
Q psy15570 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPID 80 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~ 80 (84)
.+.||+|+|+||++|||+|+.++++.|++.|++.+.+.+ +.+..+...++.-+++
T Consensus 138 ~V~gK~cvIVDDvittG~Ti~E~Ie~lke~g~kpv~v~V---L~dK~G~dei~gvPi~ 192 (203)
T COG0856 138 SVEGKRCVIVDDVITTGSTIKETIEQLKEEGGKPVLVVV---LADKKGVDEIEGVPVE 192 (203)
T ss_pred cccCceEEEEecccccChhHHHHHHHHHHcCCCcEEEEE---EEccCCcccccCcchH
Confidence 478999999999999999999999999999999877776 5567777666655544
No 53
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.89 E-value=2.5e-09 Score=73.63 Aligned_cols=47 Identities=28% Similarity=0.530 Sum_probs=41.8
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHH
Q psy15570 22 GDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAP 71 (84)
Q Consensus 22 g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~ 71 (84)
.+++||+|+||||+++||.|+..+.+.|+.+||+++..++ ++.++..
T Consensus 89 ~di~grdVLiVeDIiDsG~TLs~i~~~l~~r~a~sv~i~t---LldK~~~ 135 (178)
T COG0634 89 EDIKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVRIAT---LLDKPER 135 (178)
T ss_pred cCCCCCeEEEEecccccChhHHHHHHHHHhCCCCeEEEEE---EeeCccc
Confidence 4689999999999999999999999999999999999888 5555533
No 54
>PRK06031 phosphoribosyltransferase; Provisional
Probab=98.87 E-value=7.8e-09 Score=73.69 Aligned_cols=54 Identities=20% Similarity=0.158 Sum_probs=44.0
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCC
Q psy15570 24 VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESP 78 (84)
Q Consensus 24 v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~ 78 (84)
++|++|+||||+++||+|+..+++.|+++|++.+.+++... ....+.++|.+.+
T Consensus 152 ~~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga~Vvgv~v~v~-~g~~~~~~l~~~~ 205 (233)
T PRK06031 152 LEGRRVALIDDVISSGASIVAGLRLLAACGIEPAGIGAAML-QSERWRESLAAAG 205 (233)
T ss_pred CCCCEEEEEEeEccccHHHHHHHHHHHHcCCeEEEEEEEEE-ccccHHHHHHhcC
Confidence 58999999999999999999999999999998777666422 2346677776654
No 55
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=98.86 E-value=5e-09 Score=80.47 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=40.0
Q ss_pred eccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEecc
Q psy15570 21 VGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGL 65 (84)
Q Consensus 21 ~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~ 65 (84)
.+.++||+|+||||+++||+|+.++++.|+++||++|++.+.-|.
T Consensus 329 ~~~v~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~~spp 373 (442)
T PRK08341 329 REVINGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRIASPP 373 (442)
T ss_pred ccccCCCEEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEEEcCCC
Confidence 345789999999999999999999999999999999988875553
No 56
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=98.86 E-value=1.3e-08 Score=78.94 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=59.1
Q ss_pred CCCCCcc-cCCCCCC----eeeeccC-CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcC
Q psy15570 4 DVGVPQH-PAKEKPP----ISVVGDV-GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEES 77 (84)
Q Consensus 4 ~~~~~~~-~~~~~~~----~~i~g~v-~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~ 77 (84)
.+|.|+. .+++.+. -.+.|.+ +|++|+||||++|||+|+.++++.|++.|++.+.+++....- ..+.++|++.
T Consensus 365 ~lg~p~v~vRKe~K~~G~~~~ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V~~v~vlVDR~-~g~~~~L~~~ 443 (477)
T PRK05500 365 HLHHPMIFPRKEVKAHGTRRLIEGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVFIDHE-QGVKDKLQSH 443 (477)
T ss_pred HhCCCEEEEecCcCccCCCceEecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECC-cchHHHHHhc
Confidence 3678876 6666432 2355665 699999999999999999999999999999988888865543 4678888776
Q ss_pred CCC
Q psy15570 78 PID 80 (84)
Q Consensus 78 ~i~ 80 (84)
++.
T Consensus 444 gv~ 446 (477)
T PRK05500 444 GYQ 446 (477)
T ss_pred CCC
Confidence 653
No 57
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=98.85 E-value=3.9e-09 Score=81.55 Aligned_cols=49 Identities=22% Similarity=0.298 Sum_probs=42.3
Q ss_pred Ceee-eccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEecc
Q psy15570 17 PISV-VGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGL 65 (84)
Q Consensus 17 ~~~i-~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~ 65 (84)
.|+. ...++||+|+||||+++||.|+.++++.|+++||++|++...-|.
T Consensus 338 ~f~~~~~~i~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~sPp 387 (471)
T PRK06781 338 KLSAVRGVVEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASPP 387 (471)
T ss_pred ceeccccccCCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEECCCC
Confidence 4553 345789999999999999999999999999999999998886553
No 58
>PLN02440 amidophosphoribosyltransferase
Probab=98.83 E-value=6.8e-09 Score=80.26 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=38.9
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEe
Q psy15570 22 GDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATH 63 (84)
Q Consensus 22 g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h 63 (84)
..++||+|+||||++|||.|+.++++.|+++||++|++++.-
T Consensus 336 ~~v~gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v~~ 377 (479)
T PLN02440 336 SVLEGKRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRIAS 377 (479)
T ss_pred ccccCceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEEEC
Confidence 457999999999999999999999999999999999988853
No 59
>KOG3367|consensus
Probab=98.81 E-value=7.5e-09 Score=71.77 Aligned_cols=59 Identities=19% Similarity=0.314 Sum_probs=48.5
Q ss_pred ccCCCCCCeeeec-----cCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHH
Q psy15570 10 HPAKEKPPISVVG-----DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAP 71 (84)
Q Consensus 10 ~~~~~~~~~~i~g-----~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~ 71 (84)
++..-...++++| ++.||+|+|+||+++||.||..+.+.+++.+++.+++++ +++....
T Consensus 104 ~n~~stg~iqiig~d~l~~ltgK~VliVeDIvdTGrTl~~Lls~~~~~k~~~v~vas---LL~Krt~ 167 (216)
T KOG3367|consen 104 CNDQSTGDIQIIGGDDLSTLTGKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVAS---LLVKRTR 167 (216)
T ss_pred cCCcccCCceeecCCCHHHhcCCcEEEEEeeccccchHHHHHHHHHhcCccceeeee---ecccccc
Confidence 3445555677766 378999999999999999999999999999999999988 5655443
No 60
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=98.81 E-value=9.7e-09 Score=79.52 Aligned_cols=44 Identities=25% Similarity=0.316 Sum_probs=40.0
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEecc
Q psy15570 22 GDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGL 65 (84)
Q Consensus 22 g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~ 65 (84)
+.++||+|+||||+++||+|+.++++.|+++||++|++...-|.
T Consensus 344 ~~v~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~~sPp 387 (475)
T PRK07631 344 GVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISSPP 387 (475)
T ss_pred cccCCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEeCCC
Confidence 45789999999999999999999999999999999998876553
No 61
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.78 E-value=1.7e-08 Score=70.75 Aligned_cols=71 Identities=25% Similarity=0.275 Sum_probs=53.0
Q ss_pred cCCCCCC----eeeecc-CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCcC
Q psy15570 11 PAKEKPP----ISVVGD-VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 82 (84)
Q Consensus 11 ~~~~~~~----~~i~g~-v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i 82 (84)
.|++.+. -.+.|. .+|++|++|||++|||+++.++++.+++.|+..+.+++...-- +.+.+.+.+.|+.-.
T Consensus 92 ~Rke~K~hG~~~~ieG~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~ivDR~-~~~~~~~~~~g~~~~ 167 (201)
T COG0461 92 VRKEAKDHGTGGLIEGGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAVIVDRQ-SGAKEVLKEYGVKLV 167 (201)
T ss_pred EeceeccCCCcceeEecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEEEEEEEEecc-hhHHHHHHhcCCceE
Confidence 4555442 234543 4799999999999999999999999999999988888853321 356677777776543
No 62
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=98.77 E-value=1.4e-08 Score=77.75 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=38.1
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEE
Q psy15570 22 GDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 22 g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~ 62 (84)
+.++||+|+||||+++||+|+.++++.|++.|++++++++.
T Consensus 334 ~~~~gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~~ 374 (442)
T TIGR01134 334 EVFRGKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRIA 374 (442)
T ss_pred ccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEEc
Confidence 45789999999999999999999999999999999998775
No 63
>KOG1712|consensus
Probab=98.75 E-value=1.8e-08 Score=69.06 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=51.7
Q ss_pred CCeeee-ccCC-CCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhc
Q psy15570 16 PPISVV-GDVG-GRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEE 76 (84)
Q Consensus 16 ~~~~i~-g~v~-gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~ 76 (84)
+.+.+. +-++ |.+|++|||+++||+|+.+|.+.+.+.|+..+-++|+..+-+-++.++|..
T Consensus 110 d~~Emq~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~~vieL~~LkGr~kL~~ 172 (183)
T KOG1712|consen 110 DRFEMQKGAIKPGQRVVVVDDLLATGGTLAAATELLERVGAEVVECACVIELPELKGREKLKG 172 (183)
T ss_pred cceeeeccccCCCCeEEEEechhhcCccHHHHHHHHHHhccEEEEEEEEEEccccCCccccCC
Confidence 344443 3354 899999999999999999999999999999999999888877788888865
No 64
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=98.75 E-value=1.8e-08 Score=78.06 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=38.3
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEec
Q psy15570 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHG 64 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~ 64 (84)
.++||+|+||||+++||+|+.++++.|+++||++|++...-|
T Consensus 353 ~i~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~sP 394 (474)
T PRK06388 353 VISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGSP 394 (474)
T ss_pred cccCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 467999999999999999999999999999999998877555
No 65
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=98.74 E-value=1.8e-08 Score=78.51 Aligned_cols=43 Identities=21% Similarity=0.276 Sum_probs=38.3
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEec
Q psy15570 22 GDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHG 64 (84)
Q Consensus 22 g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~ 64 (84)
..++||+|+||||+++||.|+.++++.|+++||++|++...-|
T Consensus 373 ~~~~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~i~sP 415 (500)
T PRK07349 373 DVLAGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRISSP 415 (500)
T ss_pred cccCCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEEeCCC
Confidence 3468999999999999999999999999999999998775433
No 66
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=98.71 E-value=3e-08 Score=68.00 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=46.0
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCC
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESP 78 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~ 78 (84)
+|++|+||||+++||+|+..+.+.++++|+..+.+++.-.....+..+++...+
T Consensus 115 ~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~~~~ie~~~~~gr~~l~~~~ 168 (179)
T COG0503 115 PGDRVLIVDDLLATGGTALALIELLEQAGAEVVGAAFVIELGELDGRKKLEDDG 168 (179)
T ss_pred CCCEEEEEecchhcChHHHHHHHHHHHCCCEEEEEEEEEEcCccccchhhccCC
Confidence 599999999999999999999999999999999888876655556666666644
No 67
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.70 E-value=2.5e-08 Score=70.33 Aligned_cols=56 Identities=27% Similarity=0.408 Sum_probs=49.8
Q ss_pred eeccCCCCEEEEEeccccchHHHHHHHHHHHHc-CCCeEEEEEEeccCCCCHHHHhhcC
Q psy15570 20 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDR-GAYKIYVLATHGLLSSDAPLLIEES 77 (84)
Q Consensus 20 i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~-ga~~v~~~~~h~~~s~~a~~~l~~~ 77 (84)
+..+.+++.++++|.|++||+|+..+++.|+++ |++++++++. +.+++++++++++
T Consensus 118 LP~~~~~~~viv~DPMLATG~s~i~ai~~L~~~G~~~~I~~v~~--vAapeGi~~v~~~ 174 (210)
T COG0035 118 LPEDIDERTVIVLDPMLATGGSAIAAIDLLKKRGGPKNIKVVSL--VAAPEGIKAVEKA 174 (210)
T ss_pred CCCcccCCeEEEECchhhccHhHHHHHHHHHHhCCCceEEEEEE--EecHHHHHHHHHh
Confidence 344688999999999999999999999999999 8999998887 5678999999873
No 68
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=98.66 E-value=5.6e-08 Score=68.79 Aligned_cols=55 Identities=25% Similarity=0.381 Sum_probs=49.1
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCC
Q psy15570 22 GDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESP 78 (84)
Q Consensus 22 g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~ 78 (84)
.+++||.|+|+||-+.||.||..+++.+++++++.+.+++ |++++++.+.|...+
T Consensus 120 ~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAV--PV~p~~a~~~l~s~~ 174 (220)
T COG1926 120 PSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAV--PVAPEDAAAELESEA 174 (220)
T ss_pred CCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEc--ccCCHHHHHHHHhhc
Confidence 3578999999999999999999999999999999998888 688889998886543
No 69
>PLN02541 uracil phosphoribosyltransferase
Probab=98.66 E-value=4.1e-08 Score=70.53 Aligned_cols=54 Identities=28% Similarity=0.346 Sum_probs=45.6
Q ss_pred ccCC-CCEEEEEeccccchHHHHHHHHHHHHcCCC--eEEEEEEeccCCCCHHHHhhcC
Q psy15570 22 GDVG-GRVAIMVDDMVDDVHSFVAAAEVLKDRGAY--KIYVLATHGLLSSDAPLLIEES 77 (84)
Q Consensus 22 g~v~-gk~vlivDDii~TG~Tl~~~~~~L~~~ga~--~v~~~~~h~~~s~~a~~~l~~~ 77 (84)
.++. +++|+|+|||++||+|+..+++.|+++|+. .+.+++. +.++.+++++.+.
T Consensus 152 ~~i~~~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~v~~--ias~~Gl~~i~~~ 208 (244)
T PLN02541 152 DKFPEGSRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRVVCA--VAAPPALKKLSEK 208 (244)
T ss_pred hhcCCCCEEEEECcchhhhHHHHHHHHHHHHcCCCcccEEEEEE--EECHHHHHHHHHH
Confidence 3454 679999999999999999999999999987 6666665 6678999998763
No 70
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=98.61 E-value=7.9e-08 Score=75.06 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=38.4
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEec
Q psy15570 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHG 64 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~ 64 (84)
.++||+|+||||+++||.|+..+++.|+++|+++|++...-|
T Consensus 364 ~~~gk~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~ri~sP 405 (510)
T PRK07847 364 VIRGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRISSP 405 (510)
T ss_pred ccCCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 368999999999999999999999999999999998877555
No 71
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=98.61 E-value=1.3e-07 Score=67.43 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=42.9
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhc
Q psy15570 24 VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEE 76 (84)
Q Consensus 24 v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~ 76 (84)
.+|++|+||||+++||+|+..+++.++++|+..+.+++....- ..+.+++.+
T Consensus 174 ~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~-~~~~~~l~~ 225 (238)
T PRK08558 174 KKGDRVLIVDDIIRSGETQRALLDLARQAGADVVGVFFLIAVG-EVGIDRARE 225 (238)
T ss_pred CCcCEEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEEEecC-chHHHHHhH
Confidence 4799999999999999999999999999999988888754432 344666654
No 72
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=98.56 E-value=1.2e-07 Score=66.15 Aligned_cols=55 Identities=25% Similarity=0.383 Sum_probs=46.2
Q ss_pred eeccCCCCEEEEEeccccchHHHHHHHHHHHHcCC--CeEEEEEEeccCCCCHHHHhhc
Q psy15570 20 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGA--YKIYVLATHGLLSSDAPLLIEE 76 (84)
Q Consensus 20 i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga--~~v~~~~~h~~~s~~a~~~l~~ 76 (84)
+..++++++|+|+|.|++||+|+..+++.|+++|+ +++.++++ +.++++++++.+
T Consensus 115 LP~~i~~~~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I~~v~~--ias~~Gl~~l~~ 171 (207)
T PF14681_consen 115 LPEDIENRKVILLDPMLATGGSAIAAIEILKEHGVPEENIIIVSV--IASPEGLERLLK 171 (207)
T ss_dssp --TTGTTSEEEEEESEESSSHHHHHHHHHHHHTTG-GGEEEEEEE--EEEHHHHHHHHH
T ss_pred CCCCccCCEEEEEeccccchhhHHHHHHHHHHcCCCcceEEEEEE--EecHHHHHHHHH
Confidence 44567899999999999999999999999999986 57777776 557889999875
No 73
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=98.35 E-value=9.4e-07 Score=64.32 Aligned_cols=48 Identities=10% Similarity=0.068 Sum_probs=39.6
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHh
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLI 74 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l 74 (84)
+|++|+||||+++||+|+..+++.++++|+..+.+++.... .+..+++
T Consensus 193 ~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vlve~--~~~~~~l 240 (268)
T TIGR01743 193 TGSKVLIIDDFMKAGGTINGMINLLDEFDAEVAGIGVLIDN--EGVDEKL 240 (268)
T ss_pred CcCEEEEEeeecccCHHHHHHHHHHHHCCCEEEEEEEEEEC--CCChHHc
Confidence 69999999999999999999999999999998887775443 2334444
No 74
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=98.30 E-value=9.2e-07 Score=59.41 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=26.1
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHH
Q psy15570 24 VGGRVAIMVDDMVDDVHSFVAAAEVLKD 51 (84)
Q Consensus 24 v~gk~vlivDDii~TG~Tl~~~~~~L~~ 51 (84)
.+||+|+||||+++||.|+..+.+.+++
T Consensus 82 ~~gk~VLIVDDIiDTG~Tl~~v~~~l~~ 109 (156)
T PRK09177 82 GDGEGFLVVDDLVDTGGTARAVREMYPK 109 (156)
T ss_pred cCcCEEEEEeeeeCCHHHHHHHHHHHhh
Confidence 5799999999999999999999999974
No 75
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=98.29 E-value=4.1e-07 Score=63.45 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=31.7
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEE
Q psy15570 24 VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIY 58 (84)
Q Consensus 24 v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~ 58 (84)
+.||+||||||+.|||.||..+.+.|++..+..++
T Consensus 85 l~GkkVLIVDDI~DTG~Tl~~a~~~l~~~~p~e~r 119 (192)
T COG2236 85 LSGKKVLIVDDIVDTGETLELALEELKKLAPAEVR 119 (192)
T ss_pred cCCCeEEEEecccCchHhHHHHHHHHHhhCchhhh
Confidence 78999999999999999999999999996666664
No 76
>PRK09213 pur operon repressor; Provisional
Probab=98.28 E-value=1.5e-06 Score=63.35 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=36.4
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEec
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHG 64 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~ 64 (84)
+|++|+||||+++||+|+..+++.++++|+..+.+++...
T Consensus 195 ~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vlVd 234 (271)
T PRK09213 195 EGSRVLIVDDFMKAGGTINGMISLLKEFDAEVVGIGVLVE 234 (271)
T ss_pred CcCEEEEEeeecccCHhHHHHHHHHHHCCCEEEEEEEEEE
Confidence 6999999999999999999999999999999888777544
No 77
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.25 E-value=1.8e-06 Score=59.27 Aligned_cols=46 Identities=28% Similarity=0.333 Sum_probs=40.0
Q ss_pred CeeeeccCCCCEEEEEeccccchHHHHHHHHHHHHcC-CCeEEEEEE
Q psy15570 17 PISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRG-AYKIYVLAT 62 (84)
Q Consensus 17 ~~~i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~g-a~~v~~~~~ 62 (84)
...+..++.||+|+||||++-||.|+.+|+++|..+| +..+..++.
T Consensus 87 ~t~~~~di~~k~VILVDDVLytGRTIRAAldal~d~GRPa~I~LavL 133 (179)
T COG2065 87 TTILPFDITGKRVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAVL 133 (179)
T ss_pred CccCcccccCCEEEEEeeecccCccHHHHHHHHHhcCCcceEEEEEE
Confidence 4455668999999999999999999999999999999 777777763
No 78
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=98.01 E-value=6.4e-06 Score=63.77 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=38.5
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEec
Q psy15570 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHG 64 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~ 64 (84)
.++||+|+||||-|-.|+|....++.||++||++|++...-|
T Consensus 345 ~v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvriasP 386 (470)
T COG0034 345 VVKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIASP 386 (470)
T ss_pred HhCCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEecCC
Confidence 478999999999999999999999999999999999876544
No 79
>KOG0572|consensus
Probab=97.76 E-value=3.6e-05 Score=59.05 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=39.2
Q ss_pred eccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEec
Q psy15570 21 VGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHG 64 (84)
Q Consensus 21 ~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~ 64 (84)
.+.++||+++||||-|--|.|+...++.||++||++|+....-|
T Consensus 351 ~~~~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~riAsP 394 (474)
T KOG0572|consen 351 RQNFEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIRIASP 394 (474)
T ss_pred hhhcCCceEEEEecceeccCchHHHHHHHHHcCCcEEEEEecCC
Confidence 34689999999999999999999999999999999998766444
No 80
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=97.41 E-value=0.00034 Score=48.89 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=31.9
Q ss_pred CCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEE
Q psy15570 26 GRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 26 gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~ 62 (84)
.+.+++|||-+|||.|+..+++.|++.-+.+-+++++
T Consensus 121 ~~~lVLVDDEiSTG~T~lnli~al~~~~p~~~yvvas 157 (191)
T PF15609_consen 121 ARTLVLVDDEISTGNTFLNLIRALHAKYPRKRYVVAS 157 (191)
T ss_pred CCCEEEEecCccchHHHHHHHHHHHHhCCCceEEEEE
Confidence 6799999999999999999999999998766555553
No 81
>KOG1017|consensus
Probab=96.30 E-value=0.01 Score=42.52 Aligned_cols=54 Identities=20% Similarity=0.304 Sum_probs=40.1
Q ss_pred eeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCe-EEEEEEeccCC-CCHHHHhh
Q psy15570 20 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYK-IYVLATHGLLS-SDAPLLIE 75 (84)
Q Consensus 20 i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~-v~~~~~h~~~s-~~a~~~l~ 75 (84)
+..|+.-|+|++.=++++||.|+..|++.|+++|+.. ...++. +|. +-+.+.+.
T Consensus 183 fppDI~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~s~IiL~s--LF~tP~gak~i~ 238 (267)
T KOG1017|consen 183 FPPDITSRRVLLMYPIISTGNTVCKAVEVLKEHGVPDSNIILVS--LFITPTGAKNIT 238 (267)
T ss_pred cCCcccceeEEEEeeeecCCccHHHHHHHHHHcCCCcccEEEEE--eeecchhhHHHH
Confidence 3457778999999999999999999999999999654 333332 444 44555543
No 82
>PF15610 PRTase_3: PRTase ComF-like
Probab=93.41 E-value=0.16 Score=37.36 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=34.2
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
.++||.||.+||+--||++=....+.+++.|++......
T Consensus 135 ~l~gk~lIflDDIkITGshE~~V~~~~~~~~~~~~~~yl 173 (274)
T PF15610_consen 135 FLSGKHLIFLDDIKITGSHEDKVRKILKEYGLENDFIYL 173 (274)
T ss_pred HhCCcEEEEeccEEecCcHHHHHHHHHHHcCccccEEEE
Confidence 378999999999999999999999999999998744443
No 83
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=86.59 E-value=2.5 Score=27.10 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=32.4
Q ss_pred eccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 21 VGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 21 ~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
.+++++++++|+ -+|++-..++..|.+.|++++.++.
T Consensus 7 ~~~l~~~~vlvi----GaGg~ar~v~~~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 7 FGDLKGKRVLVI----GAGGAARAVAAALAALGAKEITIVN 43 (135)
T ss_dssp HSTGTTSEEEEE----SSSHHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCCcCCCEEEEE----CCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 357899999984 6899999999999999999988765
No 84
>KOG0814|consensus
Probab=84.73 E-value=1.7 Score=30.87 Aligned_cols=52 Identities=29% Similarity=0.401 Sum_probs=42.1
Q ss_pred cCCCCCCee-eeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEecc
Q psy15570 11 PAKEKPPIS-VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGL 65 (84)
Q Consensus 11 ~~~~~~~~~-i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~ 65 (84)
.++++-.|. +.|+.+.+..+|||.++.|- .+-++.+++.|.+-++++-||--
T Consensus 15 fe~~SsTytYll~d~~~~~AviIDPV~et~---~RD~qlikdLgl~LiYa~NTH~H 67 (237)
T KOG0814|consen 15 FEFESSTYTYLLGDHKTGKAVIIDPVLETV---SRDAQLIKDLGLDLIYALNTHVH 67 (237)
T ss_pred hccccceEEEEeeeCCCCceEEecchhhcc---cchHHHHHhcCceeeeeecceee
Confidence 456666765 57899999999999999764 45668899999999999988863
No 85
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=82.40 E-value=7.4 Score=24.78 Aligned_cols=45 Identities=13% Similarity=0.299 Sum_probs=30.8
Q ss_pred eeeeccCCCCEEEEEeccccc--hH--HHHHHHHHHHHcCCCeEEEEEE
Q psy15570 18 ISVVGDVGGRVAIMVDDMVDD--VH--SFVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 18 ~~i~g~v~gk~vlivDDii~T--G~--Tl~~~~~~L~~~ga~~v~~~~~ 62 (84)
..+.+++.|++|+|+=++... -. .+..+++++++.|++++.++..
T Consensus 39 v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~i~~ViP 87 (116)
T PF13793_consen 39 VRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGAKRITLVIP 87 (116)
T ss_dssp EEESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTBSEEEEEES
T ss_pred EEecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 456678899999999999876 22 2344679999999999988874
No 86
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=81.71 E-value=4.4 Score=23.02 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=27.2
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEE
Q psy15570 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIY 58 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~ 58 (84)
.-+++.+++++ .+|.....++..|++.|...++
T Consensus 53 ~~~~~~iv~~c---~~g~~a~~~~~~l~~~G~~~v~ 85 (100)
T smart00450 53 LDKDKPVVVYC---RSGNRSAKAAWLLRELGFKNVY 85 (100)
T ss_pred CCCCCeEEEEe---CCCcHHHHHHHHHHHcCCCceE
Confidence 34678899998 5788888899999999998755
No 87
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=81.41 E-value=4 Score=27.21 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=33.2
Q ss_pred eccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhc
Q psy15570 33 DDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEE 76 (84)
Q Consensus 33 DDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~ 76 (84)
=|...+...+..+.+.|+.+|++.++.+. ..++.+++.|.+
T Consensus 99 ~Dl~~~~~~i~~a~~~L~~aG~~~if~vS---~~~~eGi~eL~~ 139 (143)
T PF10662_consen 99 IDLPSDDANIERAKKWLKNAGVKEIFEVS---AVTGEGIEELKD 139 (143)
T ss_pred ccCccchhhHHHHHHHHHHcCCCCeEEEE---CCCCcCHHHHHH
Confidence 46676788999999999999999997777 456787877753
No 88
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=78.86 E-value=6.4 Score=22.09 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=27.2
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEE
Q psy15570 24 VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVL 60 (84)
Q Consensus 24 v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~ 60 (84)
-+++.++++++- |.....++..|++.|...++.+
T Consensus 48 ~~~~~vv~~c~~---~~~a~~~~~~l~~~G~~~v~~l 81 (89)
T cd00158 48 DKDKPIVVYCRS---GNRSARAAKLLRKAGGTNVYNL 81 (89)
T ss_pred CCCCeEEEEeCC---CchHHHHHHHHHHhCcccEEEe
Confidence 457889998876 7777888999999998877643
No 89
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=78.20 E-value=6.6 Score=23.14 Aligned_cols=32 Identities=16% Similarity=0.024 Sum_probs=25.2
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEE
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYV 59 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~ 59 (84)
+++.++++++ +|.....++..|++.|...++.
T Consensus 55 ~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~~ 86 (96)
T cd01529 55 RATRYVLTCD---GSLLARFAAQELLALGGKPVAL 86 (96)
T ss_pred CCCCEEEEeC---ChHHHHHHHHHHHHcCCCCEEE
Confidence 5778999875 6777778888899999887654
No 90
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=76.95 E-value=5.6 Score=23.14 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=26.5
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEE
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIY 58 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~ 58 (84)
+++.++++.. +|.+...++..|++.|...++
T Consensus 55 ~~~~ivv~c~---~g~~s~~a~~~l~~~G~~~v~ 85 (96)
T cd01444 55 RDRPVVVYCY---HGNSSAQLAQALREAGFTDVR 85 (96)
T ss_pred CCCCEEEEeC---CCChHHHHHHHHHHcCCceEE
Confidence 5788888887 888888899999999988765
No 91
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=76.79 E-value=14 Score=27.25 Aligned_cols=59 Identities=20% Similarity=0.264 Sum_probs=39.3
Q ss_pred CCCCCcc---cCCCCC---CeeeeccCCCCEEEEEeccccchHH---HHHHHHHHHHcCCCeEEEEEE
Q psy15570 4 DVGVPQH---PAKEKP---PISVVGDVGGRVAIMVDDMVDDVHS---FVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 4 ~~~~~~~---~~~~~~---~~~i~g~v~gk~vlivDDii~TG~T---l~~~~~~L~~~ga~~v~~~~~ 62 (84)
.+|+|++ ....++ ..++..++.|+.|+|+-.+...-.. +.-++++++++|++++.++..
T Consensus 21 ~lg~~~~~~~~~~F~dGE~~v~i~~~v~g~~V~ivqs~~~~n~~l~elll~~~alr~~~a~~i~~ViP 88 (301)
T PRK07199 21 ALGVEVGRIELHRFPDGESYVRLDSPVAGRTVVLVCSLDRPDEKLLPLLFAAEAARELGARRVGLVAP 88 (301)
T ss_pred HhCCceeeeEEEECCCCCEEEEECCCCCCCEEEEECCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEee
Confidence 4577765 222222 3455678899999999887643232 334668899999999887764
No 92
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=73.16 E-value=9.8 Score=25.55 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=37.4
Q ss_pred EEEEEeccccchHHH-HHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCcC
Q psy15570 28 VAIMVDDMVDDVHSF-VAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 82 (84)
Q Consensus 28 ~vlivDDii~TG~Tl-~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i 82 (84)
+++.+-=...-..|+ ..+.+.|+++|+..+.+++ =+...++-++++++.|++++
T Consensus 65 ~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~-GGvip~~d~~~l~~~G~~~i 119 (143)
T COG2185 65 DVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVV-GGVIPPGDYQELKEMGVDRI 119 (143)
T ss_pred CEEEEEeccchHHHHHHHHHHHHHHhCCcceEEee-cCccCchhHHHHHHhCccee
Confidence 455554444444444 4578999999999888443 36666777889999988775
No 93
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=69.54 E-value=25 Score=25.88 Aligned_cols=45 Identities=11% Similarity=0.173 Sum_probs=32.9
Q ss_pred eeeeccCCCCEEEEEeccccc-hHH---HHHHHHHHHHcCCCeEEEEEE
Q psy15570 18 ISVVGDVGGRVAIMVDDMVDD-VHS---FVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 18 ~~i~g~v~gk~vlivDDii~T-G~T---l~~~~~~L~~~ga~~v~~~~~ 62 (84)
.++..++.|++|+|+=..... -.. +...+++++++|++++.++..
T Consensus 30 v~i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~a~~i~~ViP 78 (302)
T PLN02369 30 VQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKRITAVIP 78 (302)
T ss_pred EEECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcCCCeEEEEee
Confidence 455678899999999886532 222 344678999999998877764
No 94
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=69.28 E-value=20 Score=27.04 Aligned_cols=59 Identities=15% Similarity=0.291 Sum_probs=40.9
Q ss_pred CCCCCccc------CCCCCCeeeeccCCCCEEEEEeccccchH-HH---HHHHHHHHHcCCCeEEEEEE
Q psy15570 4 DVGVPQHP------AKEKPPISVVGDVGGRVAIMVDDMVDDVH-SF---VAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 4 ~~~~~~~~------~~~~~~~~i~g~v~gk~vlivDDii~TG~-Tl---~~~~~~L~~~ga~~v~~~~~ 62 (84)
.+|+|++. ++-....++...+.|+.|+|+........ .+ .-.+.++++++|+++.++..
T Consensus 23 ~l~~~l~~~~~~rF~DGE~~V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA~k~asA~~It~ViP 91 (314)
T COG0462 23 RLGIPLGKVEVKRFPDGEIYVRIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDALKRASAKRITAVIP 91 (314)
T ss_pred HhCCCcccceeEEcCCCcEEEEecccccCCeEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCceEEEEee
Confidence 46777662 22222356677899999999887776333 33 33568999999999998874
No 95
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=69.11 E-value=26 Score=25.48 Aligned_cols=45 Identities=16% Similarity=0.429 Sum_probs=32.7
Q ss_pred eeeeccCCCCEEEEEeccccchHH---HHHHHHHHHHcCCCeEEEEEE
Q psy15570 18 ISVVGDVGGRVAIMVDDMVDDVHS---FVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 18 ~~i~g~v~gk~vlivDDii~TG~T---l~~~~~~L~~~ga~~v~~~~~ 62 (84)
.++.+++.|++|+++-..-+-... +..+++++++.|++++.++..
T Consensus 38 v~i~~~v~g~~v~i~~~~~~~~d~l~ell~~~~alr~~ga~~i~~v~P 85 (285)
T PRK00934 38 VRILGEIDGEDVVIISTTYPQDENLVELLLLIDALRDEGAKSITLVIP 85 (285)
T ss_pred EEECCCcCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 455678899999998875433332 334678999999999887774
No 96
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=68.43 E-value=16 Score=21.69 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=24.4
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEE
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYV 59 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~ 59 (84)
+++.++++.. +|..-..++..|++.|.+.++.
T Consensus 60 ~~~~ivvyC~---~G~rs~~a~~~L~~~G~~~v~~ 91 (101)
T cd01518 60 KGKKVLMYCT---GGIRCEKASAYLKERGFKNVYQ 91 (101)
T ss_pred CCCEEEEECC---CchhHHHHHHHHHHhCCcceee
Confidence 5778888864 6777777888899999876653
No 97
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=67.98 E-value=29 Score=25.73 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=33.0
Q ss_pred eeeeccCCCCEEEEEeccccc-h---HHHHHHHHHHHHcCCCeEEEEEE
Q psy15570 18 ISVVGDVGGRVAIMVDDMVDD-V---HSFVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 18 ~~i~g~v~gk~vlivDDii~T-G---~Tl~~~~~~L~~~ga~~v~~~~~ 62 (84)
.++..++.|+.|+|+=.+... - -.+.-++++++++|++++.++..
T Consensus 44 v~i~~~vrg~dV~iv~s~~~~~nd~lmelll~~~alr~~~a~~i~~V~P 92 (320)
T PRK02269 44 VNIEESIRGHHVFILQSTSSPVNDNLMEILIMVDALKRASAESINVVMP 92 (320)
T ss_pred EEECCCCCCCEEEEEecCCCCccchHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 455678899999999775432 1 23445679999999999887774
No 98
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=67.85 E-value=30 Score=27.21 Aligned_cols=45 Identities=9% Similarity=0.174 Sum_probs=33.2
Q ss_pred eeeeccCCCCEEEEEeccccc-hH---HHHHHHHHHHHcCCCeEEEEEE
Q psy15570 18 ISVVGDVGGRVAIMVDDMVDD-VH---SFVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 18 ~~i~g~v~gk~vlivDDii~T-G~---Tl~~~~~~L~~~ga~~v~~~~~ 62 (84)
.++..++.|+.|+|+-+.... -. -+.-++++++++||++|.++..
T Consensus 158 Vri~e~VrG~dV~IVqS~~~pvNd~LmELLllidAlr~agAkrItlViP 206 (439)
T PTZ00145 158 MQFLESIRGKDVYIIQPTCPPVNENLIELLLMISTCRRASAKKITAVIP 206 (439)
T ss_pred EEECCCcCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHhccCeEEEEee
Confidence 455678999999999876543 22 2334678999999999888774
No 99
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=67.66 E-value=13 Score=25.05 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=40.3
Q ss_pred EEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEec--cCCCCHHHHhhcCCCC
Q psy15570 29 AIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHG--LLSSDAPLLIEESPID 80 (84)
Q Consensus 29 vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~--~~s~~a~~~l~~~~i~ 80 (84)
.+-+++.--.|.|-- |+++|-+.|.++|.+...=+ ..++++..+|+++|++
T Consensus 72 yVTLEPCsH~GrTPP-C~~ali~agi~rVvva~~DPnp~Vag~G~~~L~~aGi~ 124 (146)
T COG0117 72 YVTLEPCSHYGRTPP-CADALIKAGVARVVVAMLDPNPLVAGGGLARLRAAGIE 124 (146)
T ss_pred EEEecCcccCCCCcc-hHHHHHHhCCCEEEEEecCCCccccCchHHHHHHcCCe
Confidence 456889988999854 57899999999988877544 3567899999999964
No 100
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family. Sequences from Clostridium and Thermotoga fall between these last two clades and are uncharacterized with respect to substrate range and operon.
Probab=66.74 E-value=24 Score=24.96 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=33.8
Q ss_pred eeeccCCCCEEEEEeccc----c-chHHHHHHHHHHHHcCCCeEEEEEEeccCCC
Q psy15570 19 SVVGDVGGRVAIMVDDMV----D-DVHSFVAAAEVLKDRGAYKIYVLATHGLLSS 68 (84)
Q Consensus 19 ~i~g~v~gk~vlivDDii----~-TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~ 68 (84)
-..|.++|+.|+++---+ - .-..+...++.|++.|++.+..+.+-+-+.+
T Consensus 43 ~~~G~~~g~~Vv~~~~gih~~~Gk~~~a~~~~~~~l~~~Gv~~II~~GsaGsl~~ 97 (248)
T TIGR01697 43 LVFGRLGGKPVVCMQGRFHYYEGYDMATVTFPVRVMKLLGVEILVVTNAAGGLNP 97 (248)
T ss_pred EEEEEECCEEEEEEcCCCcccCCCCHHHHHHHHHHHHHcCCCEEEEecccccCCC
Confidence 456788999999887222 0 1123455578999999999887776564443
No 101
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=66.41 E-value=32 Score=25.80 Aligned_cols=45 Identities=7% Similarity=0.160 Sum_probs=33.6
Q ss_pred eeeeccCCCCEEEEEeccccc-hHH---HHHHHHHHHHcCCCeEEEEEE
Q psy15570 18 ISVVGDVGGRVAIMVDDMVDD-VHS---FVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 18 ~~i~g~v~gk~vlivDDii~T-G~T---l~~~~~~L~~~ga~~v~~~~~ 62 (84)
.++..++.|++|+|+-..... -.. +..+++++++.|++++.++..
T Consensus 60 v~i~~~vrg~~V~ivqs~~~p~nd~l~eLll~~~alr~~ga~ri~~ViP 108 (330)
T PRK02812 60 VQIQESIRGCDVYLIQPTCAPVNDHLMELLIMVDACRRASARQITAVIP 108 (330)
T ss_pred EEeCCCCCCCEEEEECCCCCCccHHHHHHHHHHHHHHHhCCceEEEEEe
Confidence 455678899999999986533 233 344678999999999887774
No 102
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=65.56 E-value=30 Score=25.42 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=32.1
Q ss_pred eeeeccCCCCEEEEE-eccccc-h---HHHHHHHHHHHHcCCCeEEEEEE
Q psy15570 18 ISVVGDVGGRVAIMV-DDMVDD-V---HSFVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 18 ~~i~g~v~gk~vliv-DDii~T-G---~Tl~~~~~~L~~~ga~~v~~~~~ 62 (84)
.++..++.|+.|+|+ -..... - --+..+++++++.|++++.++..
T Consensus 39 v~i~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~~a~r~~ga~~i~~v~P 88 (308)
T TIGR01251 39 VRINESVRGKDVFIIQQSTSAPVNDNLMELLIMIDALKRASAKSITAVIP 88 (308)
T ss_pred EEECCCCCCCeEEEEeCCCCCCccHHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 456678899999998 554321 2 23445678999999999877774
No 103
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=64.71 E-value=19 Score=27.19 Aligned_cols=36 Identities=11% Similarity=0.028 Sum_probs=31.2
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 22 GDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 22 g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
|++.+|++++ +-+|..-..+++.|.++|++.+.++-
T Consensus 170 ~~l~~k~vLv----IGaGem~~l~a~~L~~~g~~~i~v~n 205 (338)
T PRK00676 170 QKSKKASLLF----IGYSEINRKVAYYLQRQGYSRITFCS 205 (338)
T ss_pred CCccCCEEEE----EcccHHHHHHHHHHHHcCCCEEEEEc
Confidence 7789999998 47899999999999999998776654
No 104
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=64.14 E-value=21 Score=21.11 Aligned_cols=32 Identities=13% Similarity=0.118 Sum_probs=25.1
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEE
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYV 59 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~ 59 (84)
+++.++++.+ +|.....++..|++.|...++.
T Consensus 57 ~~~~vv~~c~---~g~rs~~~~~~l~~~G~~~v~~ 88 (101)
T cd01528 57 PDKDIVVLCH---HGGRSMQVAQWLLRQGFENVYN 88 (101)
T ss_pred CCCeEEEEeC---CCchHHHHHHHHHHcCCccEEE
Confidence 4788888865 5777788888999999887653
No 105
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=63.82 E-value=8.1 Score=26.21 Aligned_cols=45 Identities=11% Similarity=0.051 Sum_probs=31.8
Q ss_pred ccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCC
Q psy15570 36 VDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPID 80 (84)
Q Consensus 36 i~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~ 80 (84)
++|..--..++.++...|.++|.....+.-....+.+.|++.||+
T Consensus 105 YvTlePC~~Ca~aI~~~gI~rVvy~~~~~~~~~~~~~~L~~~Gi~ 149 (168)
T PHA02588 105 YVTASPCPDCAKAIAQSGIKKLVYCEKYDRNGPGWDDILRKSGIE 149 (168)
T ss_pred EEeCCCcHHHHHHHHHhCCCEEEEeeccCCCcHHHHHHHHHCCCE
Confidence 445555567889999999999877765332233467889898875
No 106
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=63.30 E-value=22 Score=24.64 Aligned_cols=58 Identities=16% Similarity=0.223 Sum_probs=35.2
Q ss_pred eccCCCCEE-EEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccC-CCCHHHHhhcCCC
Q psy15570 21 VGDVGGRVA-IMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLL-SSDAPLLIEESPI 79 (84)
Q Consensus 21 ~g~v~gk~v-livDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~-s~~a~~~l~~~~i 79 (84)
.++-..|.| |-+||--....| ..+++.|+++|++-.+.+....+- .++..+++.++|-
T Consensus 31 ~~~~~~k~VaLTFDDGp~~~~t-~~lL~~L~~~~vkATFFv~G~~~~~~p~~ir~i~~~Gh 90 (224)
T TIGR02884 31 LGDTSKKVIYLTFDNGYENGYT-PKILDVLKEKKVPAAFFVTGHYIKTQPDLIKRMVDEGH 90 (224)
T ss_pred ecCCCCCEEEEEEECCCCccch-HHHHHHHHHcCCCeEEEeechhhHHCHHHHHHHHHcCC
Confidence 344445554 449997765544 567899999999866655432221 1245566666653
No 107
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=63.23 E-value=46 Score=25.02 Aligned_cols=56 Identities=5% Similarity=-0.019 Sum_probs=37.9
Q ss_pred CCCcc---cCCCCCC---eee--eccCCCCEEEEEeccccchHHHHH---HHHHHHHcCCCeEEEEEE
Q psy15570 6 GVPQH---PAKEKPP---ISV--VGDVGGRVAIMVDDMVDDVHSFVA---AAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 6 ~~~~~---~~~~~~~---~~i--~g~v~gk~vlivDDii~TG~Tl~~---~~~~L~~~ga~~v~~~~~ 62 (84)
|+|++ .....++ ..+ .+++.|++|+|+=...+. ..+.+ ++.++++.|++++.++..
T Consensus 38 g~~l~~~~~~~FpDGE~~v~v~~~~~vrg~~V~ivqs~~~p-d~lmELLl~~dAlr~~ga~~i~~ViP 104 (326)
T PLN02297 38 AIELGSINWRKFPDGFPNLFINNAHGIRGQHVAFLASFSSP-AVIFEQLSVIYALPKLFVASFTLVLP 104 (326)
T ss_pred CCceeeeEEEECCCCCEEEEEcCCCCcCCCeEEEECCCCCC-hHHHHHHHHHHHHHHcCCCEEEEEee
Confidence 67755 3444444 233 367899999998775544 33433 568899999999988874
No 108
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=63.02 E-value=38 Score=25.24 Aligned_cols=45 Identities=9% Similarity=0.183 Sum_probs=31.5
Q ss_pred eeeeccCCCCEEEEEeccccc-hH---HHHHHHHHHHHcCCCeEEEEEE
Q psy15570 18 ISVVGDVGGRVAIMVDDMVDD-VH---SFVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 18 ~~i~g~v~gk~vlivDDii~T-G~---Tl~~~~~~L~~~ga~~v~~~~~ 62 (84)
.++..++.|++|+++=+.... -. -+..+++++++.|++++.++..
T Consensus 45 v~i~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~alr~~~a~~i~~ViP 93 (319)
T PRK04923 45 VEIEESVRRQEVFVIQPTCAPSAENLMELLVLIDALKRASAASVTAVIP 93 (319)
T ss_pred EEECCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 455667899999999654322 11 2344678999999999887764
No 109
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=62.29 E-value=22 Score=20.83 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=23.8
Q ss_pred EEEEEeccccchHHHHHHHHHHHHc-CCCeEEEEE
Q psy15570 28 VAIMVDDMVDDVHSFVAAAEVLKDR-GAYKIYVLA 61 (84)
Q Consensus 28 ~vlivDDii~TG~Tl~~~~~~L~~~-ga~~v~~~~ 61 (84)
.+.+++|-..+-.++.++++.+++. +..++.++.
T Consensus 13 ~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~ 47 (91)
T PF02875_consen 13 GPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVF 47 (91)
T ss_dssp TEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEE
Confidence 3566677999999999999999988 445554444
No 110
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=61.53 E-value=26 Score=25.29 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=29.6
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
++++++++|+ -+|++-..++..|.+.|++.+.++.
T Consensus 122 ~~~~k~vlvl----GaGGaarai~~aL~~~G~~~i~I~n 156 (282)
T TIGR01809 122 PLAGFRGLVI----GAGGTSRAAVYALASLGVTDITVIN 156 (282)
T ss_pred ccCCceEEEE----cCcHHHHHHHHHHHHcCCCeEEEEe
Confidence 3568888864 7999999999999999999888765
No 111
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=60.43 E-value=47 Score=24.48 Aligned_cols=45 Identities=18% Similarity=0.160 Sum_probs=33.3
Q ss_pred eeeeccCCCCEEEEEeccccc-hHH---HHHHHHHHHHcCCCeEEEEEE
Q psy15570 18 ISVVGDVGGRVAIMVDDMVDD-VHS---FVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 18 ~~i~g~v~gk~vlivDDii~T-G~T---l~~~~~~L~~~ga~~v~~~~~ 62 (84)
.++..++.|++|+|+-..... -.. +.-+++++++.|++++.++..
T Consensus 28 vri~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~a~~i~~ViP 76 (304)
T PRK03092 28 VRFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRASAKRITVVLP 76 (304)
T ss_pred EEECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 345678899999998876543 233 345678999999999887774
No 112
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=58.95 E-value=50 Score=22.24 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=31.1
Q ss_pred ccCCCCEEEEEeccccchHHHHH-HHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCC
Q psy15570 22 GDVGGRVAIMVDDMVDDVHSFVA-AAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESP 78 (84)
Q Consensus 22 g~v~gk~vlivDDii~TG~Tl~~-~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~ 78 (84)
++++|++++|+ -.|.+.-. +++.|.+.|++ +.++. - ...+..+.+.++.
T Consensus 40 ~~l~gk~vlVi----G~G~~~G~~~a~~L~~~g~~-V~v~~--r-~~~~l~~~l~~aD 89 (168)
T cd01080 40 IDLAGKKVVVV----GRSNIVGKPLAALLLNRNAT-VTVCH--S-KTKNLKEHTKQAD 89 (168)
T ss_pred CCCCCCEEEEE----CCcHHHHHHHHHHHhhCCCE-EEEEE--C-CchhHHHHHhhCC
Confidence 57899999985 46766555 78899999984 44333 1 2234444555543
No 113
>PLN02469 hydroxyacylglutathione hydrolase
Probab=58.59 E-value=27 Score=24.93 Aligned_cols=51 Identities=22% Similarity=0.184 Sum_probs=34.4
Q ss_pred eeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCC-CHHHHhh
Q psy15570 20 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSS-DAPLLIE 75 (84)
Q Consensus 20 i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~-~a~~~l~ 75 (84)
++.+-.++.+++||.. ....+.+.+++.|.....++.||.-..- .+...|.
T Consensus 16 li~d~~~~~~vlIDp~-----~~~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~ 67 (258)
T PLN02469 16 LIIDESTKDAAVVDPV-----DPEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIK 67 (258)
T ss_pred EEEeCCCCeEEEECCC-----ChHHHHHHHHHcCCcccEEEecCCCCccccCHHHHH
Confidence 3444445679999964 2456677888888877789999997653 3444443
No 114
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=58.34 E-value=26 Score=20.62 Aligned_cols=32 Identities=19% Similarity=0.022 Sum_probs=25.2
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEE
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYV 59 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~ 59 (84)
+++.++++++ +|.+...++..|+..|.+.++.
T Consensus 65 ~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~~ 96 (106)
T cd01519 65 KDKELIFYCK---AGVRSKAAAELARSLGYENVGN 96 (106)
T ss_pred CCCeEEEECC---CcHHHHHHHHHHHHcCCcccee
Confidence 4778888864 6777788889999999887653
No 115
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=58.02 E-value=24 Score=22.82 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=36.2
Q ss_pred CCEEEEEeccc-cchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCc
Q psy15570 26 GRVAIMVDDMV-DDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDE 81 (84)
Q Consensus 26 gk~vlivDDii-~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~ 81 (84)
+-+++.+=-+. ++-..+..+++.|++.|...+.+++ -|....+-.+.+.+.|+++
T Consensus 53 ~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~viv-GG~~~~~~~~~l~~~Gvd~ 108 (132)
T TIGR00640 53 DVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVV-GGVIPPQDFDELKEMGVAE 108 (132)
T ss_pred CCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEE-eCCCChHhHHHHHHCCCCE
Confidence 33566655555 4666778888999999876555444 3444445577788888875
No 116
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=57.98 E-value=45 Score=25.61 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=32.8
Q ss_pred eeeeccCCCCEEEEEecccc---------------chHHHHH---HHHHHHHcCCCeEEEEEEe
Q psy15570 18 ISVVGDVGGRVAIMVDDMVD---------------DVHSFVA---AAEVLKDRGAYKIYVLATH 63 (84)
Q Consensus 18 ~~i~g~v~gk~vlivDDii~---------------TG~Tl~~---~~~~L~~~ga~~v~~~~~h 63 (84)
.++..++.|+.|+|+-++.. .-..+.+ ++++++ +|++++.++..+
T Consensus 69 vri~~~Vrg~dV~ivqs~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~ViPY 131 (382)
T PRK06827 69 GEILESVRGKDIYILQDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVIMPF 131 (382)
T ss_pred EEECCCCCCCeEEEEecCCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEEEeec
Confidence 45567889999999998652 2233333 778999 999998877743
No 117
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=57.93 E-value=57 Score=24.06 Aligned_cols=56 Identities=21% Similarity=0.212 Sum_probs=41.1
Q ss_pred eeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEec-cCCCCHHHHhh
Q psy15570 20 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHG-LLSSDAPLLIE 75 (84)
Q Consensus 20 i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~-~~s~~a~~~l~ 75 (84)
+.|.+.||+|+||-.=-........+.+.|+++|+.....+..-. ++.++..+++.
T Consensus 77 v~g~L~g~~V~vV~~p~a~~~~~~~v~~~L~~AGA~v~g~i~lt~~~~d~~~~~~l~ 133 (308)
T PF11382_consen 77 VAGRLTGRSVAVVTLPGADDEDVDAVRELLEQAGATVTGRITLTDKFLDPEQADKLR 133 (308)
T ss_pred hcCccCCCEEEEEEcCCCChHHHHHHHHHHHHCCCeEEEEEEEchhhcChhhHHHHH
Confidence 457789999999986666788889999999999999876555333 33445444443
No 118
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=57.61 E-value=24 Score=20.71 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=22.1
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCC
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAY 55 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~ 55 (84)
+++.++++ ..+|..-..+++.|++.|..
T Consensus 60 ~~~~ivv~---C~~G~rs~~aa~~L~~~G~~ 87 (100)
T cd01523 60 DDQEVTVI---CAKEGSSQFVAELLAERGYD 87 (100)
T ss_pred CCCeEEEE---cCCCCcHHHHHHHHHHcCce
Confidence 46777775 56887778888999999986
No 119
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=56.71 E-value=16 Score=27.67 Aligned_cols=41 Identities=10% Similarity=0.048 Sum_probs=31.2
Q ss_pred chHHHHHHHHHHHHcCCCeEEEEE-EeccCCCCH-----HHHhhcCCCC
Q psy15570 38 DVHSFVAAAEVLKDRGAYKIYVLA-THGLLSSDA-----PLLIEESPID 80 (84)
Q Consensus 38 TG~Tl~~~~~~L~~~ga~~v~~~~-~h~~~s~~a-----~~~l~~~~i~ 80 (84)
|+..+..|++.+-++|.++|.+++ ..+ .+.. .+.|++.|++
T Consensus 51 s~~p~~~cad~ii~~gi~rVVi~~D~d~--~G~~~~~~~~~~L~~aGi~ 97 (360)
T PRK14719 51 SNTPVFQIADDLIAENISEVILLTDFDR--AGRVYAKNIMEEFQSRGIK 97 (360)
T ss_pred eCCchHHHHHHHHHcCCCEEEEEECCCC--CCCccchHHHHHHHHCCCE
Confidence 888888899999999989888777 222 3333 7888888874
No 120
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=56.36 E-value=30 Score=20.37 Aligned_cols=32 Identities=16% Similarity=0.300 Sum_probs=23.6
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEE
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYV 59 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~ 59 (84)
.++.+++++ .+|.....++..|+..|...++.
T Consensus 64 ~~~~vv~~c---~~g~~s~~~a~~L~~~G~~~v~~ 95 (105)
T cd01525 64 KGKIIVIVS---HSHKHAALFAAFLVKCGVPRVCI 95 (105)
T ss_pred cCCeEEEEe---CCCccHHHHHHHHHHcCCCCEEE
Confidence 367788876 45666667778999999987763
No 121
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=55.88 E-value=55 Score=24.50 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=33.1
Q ss_pred eeeeccCCCCEEEEEeccccc-hHH---HHHHHHHHHHcCCCeEEEEEE
Q psy15570 18 ISVVGDVGGRVAIMVDDMVDD-VHS---FVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 18 ~~i~g~v~gk~vlivDDii~T-G~T---l~~~~~~L~~~ga~~v~~~~~ 62 (84)
.++..++.|+.|+|+=++... -.. +..++.++++.||+++.++..
T Consensus 48 v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~alr~~~a~~i~~ViP 96 (332)
T PRK00553 48 IRFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDALKRGSAKSITAILP 96 (332)
T ss_pred EEECCCCCCCEEEEEcCCCCCCchHHHHHHHHHHHHHHcCCCeEEEEee
Confidence 455677899999999886543 222 344678999999999887774
No 122
>PLN02962 hydroxyacylglutathione hydrolase
Probab=55.82 E-value=34 Score=24.48 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=32.4
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCC-CHHHHhh
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSS-DAPLLIE 75 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~-~a~~~l~ 75 (84)
.++.++|||..-. ......+.+++.|.+...++.||.-+.- .+...|.
T Consensus 34 ~~~~avlIDP~~~---~~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~ 82 (251)
T PLN02962 34 PDKPALLIDPVDK---TVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLK 82 (251)
T ss_pred CCCEEEEECCCCC---cHHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHH
Confidence 3567889897422 2334457888889888899999997653 3444443
No 123
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=55.39 E-value=49 Score=24.41 Aligned_cols=45 Identities=13% Similarity=0.264 Sum_probs=32.0
Q ss_pred eeeeccCCCCEEEEEeccccc-hHH---HHHHHHHHHHcCCCeEEEEEE
Q psy15570 18 ISVVGDVGGRVAIMVDDMVDD-VHS---FVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 18 ~~i~g~v~gk~vlivDDii~T-G~T---l~~~~~~L~~~ga~~v~~~~~ 62 (84)
.++..++.|++|+|+=+.... -.. +..+++++++.|++++.++..
T Consensus 39 vri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~ga~~i~lViP 87 (309)
T PRK01259 39 VEINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRASAGRITAVIP 87 (309)
T ss_pred EEeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHHHHHHcCCceEEEEee
Confidence 445567899999999665322 222 445678999999998887774
No 124
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=55.19 E-value=33 Score=25.90 Aligned_cols=44 Identities=23% Similarity=0.380 Sum_probs=36.3
Q ss_pred eccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccC
Q psy15570 21 VGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLL 66 (84)
Q Consensus 21 ~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~ 66 (84)
.|.++|.++.|+=|+- -|.|..+.+..|...| .+++.++.-.+.
T Consensus 153 ~G~~~gl~iaivGDlk-hsRva~S~~~~L~~~g-a~v~lvsP~~L~ 196 (316)
T COG0540 153 FGRLDGLKIAIVGDLK-HSRVAHSNIQALKRFG-AEVYLVSPETLL 196 (316)
T ss_pred hCCcCCcEEEEEcccc-chHHHHHHHHHHHHcC-CEEEEECchHhC
Confidence 4678999999999987 8999999999999999 557766643343
No 125
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=53.16 E-value=29 Score=20.32 Aligned_cols=32 Identities=13% Similarity=0.076 Sum_probs=23.4
Q ss_pred CCCEEEEEeccccchHH--HHHHHHHHHHcCCCeEEE
Q psy15570 25 GGRVAIMVDDMVDDVHS--FVAAAEVLKDRGAYKIYV 59 (84)
Q Consensus 25 ~gk~vlivDDii~TG~T--l~~~~~~L~~~ga~~v~~ 59 (84)
+++.++++.+ +|.. ...++..|++.|.+.++.
T Consensus 49 ~~~~ivl~c~---~G~~~~s~~aa~~L~~~G~~~v~~ 82 (92)
T cd01532 49 RDTPIVVYGE---GGGEDLAPRAARRLSELGYTDVAL 82 (92)
T ss_pred CCCeEEEEeC---CCCchHHHHHHHHHHHcCccCEEE
Confidence 4678888865 5532 567788999999988763
No 126
>PRK08508 biotin synthase; Provisional
Probab=53.05 E-value=20 Score=25.77 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCcCC
Q psy15570 40 HSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEVP 83 (84)
Q Consensus 40 ~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i~ 83 (84)
..+..+++.+++.++. +.+.++.+..+.+.+++|.++|++.++
T Consensus 75 e~~~ei~~~ik~~~p~-l~i~~s~G~~~~e~l~~Lk~aGld~~~ 117 (279)
T PRK08508 75 EYVAEAAKAVKKEVPG-LHLIACNGTASVEQLKELKKAGIFSYN 117 (279)
T ss_pred HHHHHHHHHHHhhCCC-cEEEecCCCCCHHHHHHHHHcCCCEEc
Confidence 4556777888877653 444556688888999999999998765
No 127
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=52.65 E-value=40 Score=24.36 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=32.5
Q ss_pred eeeccCCCCEEEEEecccc--chHH---HHHHHHHHHHcCCCeEEEEEEeccCC
Q psy15570 19 SVVGDVGGRVAIMVDDMVD--DVHS---FVAAAEVLKDRGAYKIYVLATHGLLS 67 (84)
Q Consensus 19 ~i~g~v~gk~vlivDDii~--TG~T---l~~~~~~L~~~ga~~v~~~~~h~~~s 67 (84)
-+.|.+.|+.|+++---+= -|.+ +...++.|++.|++.+....+-+-+.
T Consensus 65 ~~~G~l~g~~Vv~~~g~~H~yeG~~~~~~~a~i~~l~~lGv~~II~tgaaGsL~ 118 (272)
T PRK08202 65 LVLGRLGGKPVLAMQGRFHYYEGYSMEAVTFPVRVMKALGVETLIVTNAAGGLN 118 (272)
T ss_pred EEEEEECCEEEEEEccCCcccCCCCHHHHHHHHHHHHHcCCCEEEEecccccCC
Confidence 4567889999999873330 0112 44456799999999888776555443
No 128
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=51.29 E-value=27 Score=22.90 Aligned_cols=39 Identities=10% Similarity=0.120 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCC-cCC
Q psy15570 43 VAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPID-EVP 83 (84)
Q Consensus 43 ~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~-~i~ 83 (84)
....+.|++..+. .++|||++.+.-+...+.+.+.. .+|
T Consensus 79 ~~l~~~l~~~~PD--~IIsThp~~~~~~l~~lk~~~~~~~~p 118 (169)
T PF06925_consen 79 RRLIRLLREFQPD--LIISTHPFPAQVPLSRLKRRGRLPNIP 118 (169)
T ss_pred HHHHHHHhhcCCC--EEEECCcchhhhHHHHHHHhhcccCCc
Confidence 4566778888887 67899996544336666665532 444
No 129
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=51.14 E-value=29 Score=25.97 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=23.8
Q ss_pred cccchHHHHHHHHHHHHcCCCeEEEEEEec
Q psy15570 35 MVDDVHSFVAAAEVLKDRGAYKIYVLATHG 64 (84)
Q Consensus 35 ii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~ 64 (84)
-+-||+|+.-+.+.||+..+. ++++++-|
T Consensus 176 gvGTGGTitGvar~Lk~~~p~-i~iv~vdP 204 (300)
T COG0031 176 GVGTGGTITGVARYLKERNPN-VRIVAVDP 204 (300)
T ss_pred eCCcchhHHHHHHHHHhhCCC-cEEEEECC
Confidence 357999999999999999887 66666544
No 130
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=51.13 E-value=44 Score=20.08 Aligned_cols=31 Identities=10% Similarity=-0.065 Sum_probs=23.8
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEE
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIY 58 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~ 58 (84)
+++.+++++ .+|.....++..|+..|.+.++
T Consensus 77 ~~~~iv~yc---~~g~~s~~~~~~l~~~G~~~v~ 107 (118)
T cd01449 77 PDKPVIVYC---GSGVTACVLLLALELLGYKNVR 107 (118)
T ss_pred CCCCEEEEC---CcHHHHHHHHHHHHHcCCCCee
Confidence 577888886 4577777788889999987654
No 131
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=50.74 E-value=45 Score=19.20 Aligned_cols=29 Identities=21% Similarity=0.092 Sum_probs=22.1
Q ss_pred CCEEEEEeccccchHHHHHHHHHHHHcCCCeEE
Q psy15570 26 GRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIY 58 (84)
Q Consensus 26 gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~ 58 (84)
+++++++.+ +|.....++..|++.|. .++
T Consensus 51 ~~~vvl~c~---~g~~a~~~a~~L~~~G~-~v~ 79 (90)
T cd01524 51 DKEIIVYCA---VGLRGYIAARILTQNGF-KVK 79 (90)
T ss_pred CCcEEEEcC---CChhHHHHHHHHHHCCC-CEE
Confidence 577888854 57777788889999998 554
No 132
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=50.46 E-value=12 Score=22.91 Aligned_cols=39 Identities=26% Similarity=0.442 Sum_probs=25.3
Q ss_pred eccccchHHHHHHHHHHHH-cCCCeEEEEEEeccCCCCHHHHhhcCCC
Q psy15570 33 DDMVDDVHSFVAAAEVLKD-RGAYKIYVLATHGLLSSDAPLLIEESPI 79 (84)
Q Consensus 33 DDii~TG~Tl~~~~~~L~~-~ga~~v~~~~~h~~~s~~a~~~l~~~~i 79 (84)
|+++++|.... +.|++ .+.++++++.. ++..+.+.+.|+
T Consensus 61 ~~i~ts~~~~~---~~l~~~~~~~~v~vlG~-----~~l~~~l~~~G~ 100 (101)
T PF13344_consen 61 DEIITSGMAAA---EYLKEHKGGKKVYVLGS-----DGLREELREAGF 100 (101)
T ss_dssp GGEEEHHHHHH---HHHHHHTTSSEEEEES------HHHHHHHHHTTE
T ss_pred CEEEChHHHHH---HHHHhcCCCCEEEEEcC-----HHHHHHHHHcCC
Confidence 78888886655 46666 56677776653 455666776665
No 133
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=49.74 E-value=22 Score=20.71 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=24.1
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEE
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIY 58 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~ 58 (84)
+++.++++++ +|.....++..|++.|...++
T Consensus 60 ~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~ 90 (103)
T cd01447 60 EDKPFVFYCA---SGWRSALAGKTLQDMGLKPVY 90 (103)
T ss_pred CCCeEEEEcC---CCCcHHHHHHHHHHcChHHhE
Confidence 4778888874 566667788999999987665
No 134
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=48.89 E-value=40 Score=20.76 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=24.7
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEE
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVL 60 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~ 60 (84)
+++.++++. .+|.+...++..|++.|...++.+
T Consensus 63 ~~~~ivv~C---~~G~rs~~aa~~L~~~G~~~v~~l 95 (117)
T cd01522 63 KDRPVLLLC---RSGNRSIAAAEAAAQAGFTNVYNV 95 (117)
T ss_pred CCCeEEEEc---CCCccHHHHHHHHHHCCCCeEEEC
Confidence 567787765 567777778889999998877543
No 135
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=48.75 E-value=12 Score=27.15 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEEeccCCCC
Q psy15570 40 HSFVAAAEVLKDRGAYKIYVLATHGLLSSD 69 (84)
Q Consensus 40 ~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~ 69 (84)
-++..++..|+..|..+++.+-.+++-..+
T Consensus 135 V~vetAiaml~dmG~~SiKffPM~Gl~~le 164 (236)
T TIGR03581 135 VPIETAIAMLKDMGGSSVKFFPMGGLKHLE 164 (236)
T ss_pred eeHHHHHHHHHHcCCCeeeEeecCCcccHH
Confidence 678889999999999999999888864433
No 136
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=47.85 E-value=23 Score=24.14 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=18.5
Q ss_pred CCEEEEEeccccchHHHHHHH-HHHHHcCCCeEEEEEEec
Q psy15570 26 GRVAIMVDDMVDDVHSFVAAA-EVLKDRGAYKIYVLATHG 64 (84)
Q Consensus 26 gk~vlivDDii~TG~Tl~~~~-~~L~~~ga~~v~~~~~h~ 64 (84)
|-+| |+||++..+..+.... +.|. |.. +..+.+|+
T Consensus 83 G~~V-IvD~v~~~~~~l~d~l~~~L~--~~~-vl~VgV~C 118 (174)
T PF07931_consen 83 GNNV-IVDDVFLGPRWLQDCLRRLLA--GLP-VLFVGVRC 118 (174)
T ss_dssp T-EE-EEEE--TTTHHHHHHHHHHHT--TS--EEEEEEE-
T ss_pred CCCE-EEecCccCcHHHHHHHHHHhC--CCc-eEEEEEEC
Confidence 4454 7799999998877766 4454 433 44444433
No 137
>PF14502 HTH_41: Helix-turn-helix domain
Probab=47.43 E-value=24 Score=19.48 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=18.3
Q ss_pred cchHHHHHHHHHHHHcCCCeEE
Q psy15570 37 DDVHSFVAAAEVLKDRGAYKIY 58 (84)
Q Consensus 37 ~TG~Tl~~~~~~L~~~ga~~v~ 58 (84)
-+-+|+..|++.|++.||-.+.
T Consensus 18 vs~GtiQ~Alk~Le~~gaI~Le 39 (48)
T PF14502_consen 18 VSRGTIQNALKFLEENGAIKLE 39 (48)
T ss_pred cchhHHHHHHHHHHHCCcEEee
Confidence 4678999999999999986543
No 138
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=47.18 E-value=83 Score=26.10 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=27.7
Q ss_pred CCCCEEEE-EeccccchHHHHHHHHHHHHcCCCeEEEEEE
Q psy15570 24 VGGRVAIM-VDDMVDDVHSFVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 24 v~gk~vli-vDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~ 62 (84)
+.+|.|+| +||-..+ ....+...|+++|..-++.+++
T Consensus 104 LP~KaV~LTFDDGy~s--ny~~AlPILKkyg~pATfFvVg 141 (672)
T PRK14581 104 LPDKAVLLTFDDGYSS--FYRRVYPLLKAYKWSAVLAPVG 141 (672)
T ss_pred CCCCeEEEEEEcCCcc--hHHHHHHHHHHcCCCEEEEEec
Confidence 34565555 9999985 5577899999999887665554
No 139
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=47.06 E-value=73 Score=22.73 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=29.2
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
++++++++|+ -+|+.-..++..|.+.|+..+.++.
T Consensus 120 ~~~~k~vlVl----GaGg~a~ai~~aL~~~g~~~V~v~~ 154 (278)
T PRK00258 120 DLKGKRILIL----GAGGAARAVILPLLDLGVAEITIVN 154 (278)
T ss_pred CCCCCEEEEE----cCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 4678888875 5799999999999999988877765
No 140
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=46.48 E-value=56 Score=25.18 Aligned_cols=37 Identities=3% Similarity=0.061 Sum_probs=31.4
Q ss_pred eccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 21 VGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 21 ~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
.+++.|+++++ +-+|+.-..+++.|.+.|+..+.++.
T Consensus 176 ~~~l~~kkvlv----iGaG~~a~~va~~L~~~g~~~I~V~n 212 (414)
T PRK13940 176 LDNISSKNVLI----IGAGQTGELLFRHVTALAPKQIMLAN 212 (414)
T ss_pred hcCccCCEEEE----EcCcHHHHHHHHHHHHcCCCEEEEEC
Confidence 35688999886 67899999999999999998877665
No 141
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=46.28 E-value=61 Score=19.12 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=17.7
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcC
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRG 53 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~g 53 (84)
.+.+++++|| .-.......+.|...|
T Consensus 4 ~~~~vLivdD---~~~~~~~~~~~l~~~g 29 (130)
T COG0784 4 SGLRVLVVDD---EPVNRRLLKRLLEDLG 29 (130)
T ss_pred CCcEEEEEcC---CHHHHHHHHHHHHHcC
Confidence 4678999999 3334444556777777
No 142
>KOG4203|consensus
Probab=46.06 E-value=20 Score=28.24 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=26.1
Q ss_pred EEEEeccccchHHHHHHHHHHHHcCCCe
Q psy15570 29 AIMVDDMVDDVHSFVAAAEVLKDRGAYK 56 (84)
Q Consensus 29 vlivDDii~TG~Tl~~~~~~L~~~ga~~ 56 (84)
|+++|.+++||++...+...|..+|...
T Consensus 389 V~ll~p~~~tg~~~~~a~~~ll~~gv~~ 416 (473)
T KOG4203|consen 389 VLLLDPVLATGNSAMMAIILLLDHGVPE 416 (473)
T ss_pred eeeecchhhcchhHHHHHHHHHhCCCcH
Confidence 9999999999999999999999999553
No 143
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=45.93 E-value=52 Score=21.83 Aligned_cols=52 Identities=12% Similarity=0.047 Sum_probs=31.8
Q ss_pred CEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEecc-CCCCHHHHhhcCCC
Q psy15570 27 RVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGL-LSSDAPLLIEESPI 79 (84)
Q Consensus 27 k~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~-~s~~a~~~l~~~~i 79 (84)
.-+|-+||.-....| ..+.+.|+++|++-.+.+....+ -.++..+++.+.|.
T Consensus 7 ~V~LTFDDgp~~~~t-~~~l~~L~~~~ikaTfFv~g~~~~~~~~~~~~i~~~Gh 59 (191)
T TIGR02764 7 KIALTFDISWGNDYT-EPILDTLKEYDVKATFFLSGSWAERHPELVKEIVKDGH 59 (191)
T ss_pred EEEEEEECCCCcccH-HHHHHHHHHcCCCEEEEeccHHHHHCHHHHHHHHhCCC
Confidence 456778998876554 56779999999985544442211 11245555655553
No 144
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=45.93 E-value=44 Score=22.56 Aligned_cols=49 Identities=22% Similarity=0.300 Sum_probs=31.1
Q ss_pred ccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCcC
Q psy15570 34 DMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 82 (84)
Q Consensus 34 Dii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i 82 (84)
-..|.=.-+..+++.|+++|++++.+.-.-.....+..+.++.+|++++
T Consensus 17 ~~~T~P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~ 65 (206)
T PF04015_consen 17 GATTHPEVVRAVVEMLKEAGAKEIIIAESPGSGAADTREVFKRSGYEEI 65 (206)
T ss_pred CccCCHHHHHHHHHHHHHcCCCceEEEeCCCcchHhHHHHHHHcchhhH
Confidence 3556667778889999999998766655322111355666666666543
No 145
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=45.07 E-value=49 Score=19.27 Aligned_cols=31 Identities=23% Similarity=0.146 Sum_probs=23.3
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEE
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIY 58 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~ 58 (84)
+++.++++ ..+|.....++..|++.|...++
T Consensus 53 ~~~~iv~~---c~~g~~s~~~~~~L~~~g~~~v~ 83 (99)
T cd01527 53 GANAIIFH---CRSGMRTQQNAERLAAISAGEAY 83 (99)
T ss_pred CCCcEEEE---eCCCchHHHHHHHHHHcCCccEE
Confidence 35667664 56888888889999999987554
No 146
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=44.93 E-value=32 Score=26.67 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHcCCCeEEEEEEecc-CCCCHHHHhhcCCCCcC
Q psy15570 41 SFVAAAEVLKDRGAYKIYVLATHGL-LSSDAPLLIEESPIDEV 82 (84)
Q Consensus 41 Tl~~~~~~L~~~ga~~v~~~~~h~~-~s~~a~~~l~~~~i~~i 82 (84)
-+...++.|++...-.+..+=||+. ++.+..+.|.++|++++
T Consensus 176 ~l~~lVqalk~~~~v~vVSmQTng~~L~~~lv~eLeeAGLdRi 218 (414)
T COG2100 176 HLVDLVQALKEHKGVEVVSMQTNGVLLSKKLVDELEEAGLDRI 218 (414)
T ss_pred hHHHHHHHHhcCCCceEEEEeeCceeccHHHHHHHHHhCCceE
Confidence 4667788888887777777777774 45678899999998875
No 147
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=44.91 E-value=23 Score=23.44 Aligned_cols=45 Identities=31% Similarity=0.385 Sum_probs=29.6
Q ss_pred CEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCC
Q psy15570 27 RVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPID 80 (84)
Q Consensus 27 k~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~ 80 (84)
+...+.|=++- .+|+..+-..|++.+++-+ .|.+|++.|++.||+
T Consensus 46 ~ga~vaDKvvG-----KAAA~lmv~ggv~~vyA~v----iS~~Al~~L~~~gI~ 90 (134)
T PF08973_consen 46 KGAVVADKVVG-----KAAAALMVLGGVKEVYADV----ISEPALDLLEEAGIK 90 (134)
T ss_dssp TT-EEEEEEE------HHHHHHHHHH--SEEEEEE----EEHHHHHHHHHTT--
T ss_pred hcccHHHHHHh-----HHHHHHHHHhcHHHHHHHH----HhHHHHHHHHHcCCc
Confidence 34567777774 3445667778999998776 478999999999874
No 148
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=44.84 E-value=16 Score=26.71 Aligned_cols=33 Identities=9% Similarity=0.087 Sum_probs=25.7
Q ss_pred cchHHHHHHHHHHHHcCCCeEEEEEEeccCCCC
Q psy15570 37 DDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSD 69 (84)
Q Consensus 37 ~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~ 69 (84)
|.|++-...++.+++..+..+.++..||+|-+.
T Consensus 96 Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~ 128 (279)
T COG0287 96 DVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPE 128 (279)
T ss_pred ecccccHHHHHHHHHhccCCCeeEecCCCCCCc
Confidence 466677777788888887766899999998663
No 149
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=44.36 E-value=63 Score=18.70 Aligned_cols=35 Identities=23% Similarity=0.143 Sum_probs=20.1
Q ss_pred CCCEEEEEeccccchHHHHHH--HHHHHHcCCCeEEE
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAA--AEVLKDRGAYKIYV 59 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~--~~~L~~~ga~~v~~ 59 (84)
.++.+++++.--..+.....+ ...|++.|...++.
T Consensus 66 ~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~ 102 (113)
T PF00581_consen 66 KDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYI 102 (113)
T ss_dssp TTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEE
T ss_pred ccccceeeeecccccchhHHHHHHHHHHHcCCCCEEE
Confidence 467888888333333333332 22378889886653
No 150
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=43.98 E-value=59 Score=21.53 Aligned_cols=44 Identities=14% Similarity=-0.056 Sum_probs=29.7
Q ss_pred CCCEEEEEeccccchH-HHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCC
Q psy15570 25 GGRVAIMVDDMVDDVH-SFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESP 78 (84)
Q Consensus 25 ~gk~vlivDDii~TG~-Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~ 78 (84)
+++.+++.+. +|. .-..++..|++.|.+.|+.+- ++.....++|
T Consensus 115 ~d~~IVvYC~---~G~~~S~~aa~~L~~~G~~~V~~l~-------GG~~aW~~aG 159 (162)
T TIGR03865 115 KDRPLVFYCL---ADCWMSWNAAKRALAYGYSNVYWYP-------DGTDGWQAAG 159 (162)
T ss_pred CCCEEEEEEC---CCCHHHHHHHHHHHhcCCcceEEec-------CCHHHHHHcC
Confidence 6788999876 453 445578888999998876442 3455555544
No 151
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=43.89 E-value=70 Score=23.53 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=29.4
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 24 VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 24 v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
.+|++++| +-.|++-..++-.|.+.|++++.++.
T Consensus 124 ~~~~~vli----lGAGGAarAv~~aL~~~g~~~i~V~N 157 (283)
T COG0169 124 VTGKRVLI----LGAGGAARAVAFALAEAGAKRITVVN 157 (283)
T ss_pred cCCCEEEE----ECCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 45788887 57999999999999999999888776
No 152
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=43.88 E-value=57 Score=18.96 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=22.6
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEE
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIY 58 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~ 58 (84)
+++.++++.+ +|.....++..|++.|.+ ++
T Consensus 55 ~~~~iv~~c~---~G~rs~~aa~~L~~~G~~-v~ 84 (95)
T cd01534 55 RGARIVLADD---DGVRADMTASWLAQMGWE-VY 84 (95)
T ss_pred CCCeEEEECC---CCChHHHHHHHHHHcCCE-EE
Confidence 4678888764 676667778889999987 53
No 153
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=43.73 E-value=36 Score=24.08 Aligned_cols=41 Identities=22% Similarity=0.148 Sum_probs=24.8
Q ss_pred ccchHHHHHHHHHHHHcCC---CeEEEEEEeccCCCCHHHHhhcCCCC
Q psy15570 36 VDDVHSFVAAAEVLKDRGA---YKIYVLATHGLLSSDAPLLIEESPID 80 (84)
Q Consensus 36 i~TG~Tl~~~~~~L~~~ga---~~v~~~~~h~~~s~~a~~~l~~~~i~ 80 (84)
++||+|...+++.|.+... -.+.++++ |-.....+.+.+++
T Consensus 21 ldsGST~~~~~~~L~~~~~~~~l~itvVt~----S~~~a~~l~~~gi~ 64 (218)
T TIGR00021 21 LGTGSTVAYFIEALGERVKQEGLDIVGVPT----SKQTAELARELGIP 64 (218)
T ss_pred ECCcHHHHHHHHHHHHhhhccCCCEEEEeC----CHHHHHHHHHCCCC
Confidence 5799999999999987532 13444442 33444555555543
No 154
>PRK05320 rhodanese superfamily protein; Provisional
Probab=43.41 E-value=64 Score=23.17 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=27.4
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEE
Q psy15570 24 VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIY 58 (84)
Q Consensus 24 v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~ 58 (84)
+++|.++++ .++|.....+++.|++.|.+.++
T Consensus 173 ~kdk~Ivvy---C~~G~Rs~~Aa~~L~~~Gf~~V~ 204 (257)
T PRK05320 173 LAGKTVVSF---CTGGIRCEKAAIHMQEVGIDNVY 204 (257)
T ss_pred cCCCeEEEE---CCCCHHHHHHHHHHHHcCCcceE
Confidence 468888887 78899999999999999998775
No 155
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=43.37 E-value=22 Score=23.44 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=15.9
Q ss_pred CCEEEEEeccccchHHHHHHHHH
Q psy15570 26 GRVAIMVDDMVDDVHSFVAAAEV 48 (84)
Q Consensus 26 gk~vlivDDii~TG~Tl~~~~~~ 48 (84)
.+.=+++|...-||+|+.+|.+.
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l 212 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEEL 212 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHT
T ss_pred ccceeeehhhhccChHHHHHHHc
Confidence 34456899999999999977543
No 156
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=43.25 E-value=1.3e+02 Score=24.26 Aligned_cols=53 Identities=9% Similarity=0.043 Sum_probs=35.3
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccC----CCCHHHHhhcCCCC
Q psy15570 24 VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLL----SSDAPLLIEESPID 80 (84)
Q Consensus 24 v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~----s~~a~~~l~~~~i~ 80 (84)
..||+++||- .|.+-..++..+.+.|+++|..+.-..-. +..-.+.+.+.|++
T Consensus 466 ~~gk~VvVIG----gG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~~~~~~~Gv~ 522 (654)
T PRK12769 466 TAGLNVVVLG----GGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGAN 522 (654)
T ss_pred CCCCeEEEEC----CcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHHHHHHHcCCe
Confidence 4688999885 78888888888889999888766543221 11224445566654
No 157
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=42.74 E-value=15 Score=23.79 Aligned_cols=36 Identities=25% Similarity=0.127 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhc
Q psy15570 39 VHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEE 76 (84)
Q Consensus 39 G~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~ 76 (84)
+-++..+++.|.+.|++.+.++.. -|..+..+-+.+
T Consensus 76 ~P~~~~~l~~l~~~G~~~i~v~p~--gF~~D~~Etl~d 111 (135)
T cd00419 76 EPSTDDALEELAKEGVKNVVVVPI--GFVSDHLETLYE 111 (135)
T ss_pred CCCHHHHHHHHHHcCCCeEEEECC--ccccccHHHHHH
Confidence 445778888898889988776663 255666666654
No 158
>COG0726 CDA1 Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]
Probab=42.38 E-value=39 Score=22.67 Aligned_cols=50 Identities=22% Similarity=0.137 Sum_probs=33.5
Q ss_pred EEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCC-CCHHHHhhcCC
Q psy15570 28 VAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLS-SDAPLLIEESP 78 (84)
Q Consensus 28 ~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s-~~a~~~l~~~~ 78 (84)
-++-+||.-.++ ....+...|+++|.+-.+.++..-+-. ++..+++.+.|
T Consensus 67 v~lTFDDg~~~~-~~~~il~iL~k~~i~ATfFv~g~~i~~~p~~~~~~~~~G 117 (267)
T COG0726 67 VALTFDDGPLDG-NTPRILPLLKKYGIKATFFVVGSWIERNPDLVKRIAEAG 117 (267)
T ss_pred EEEEeecCCCCC-CcHHHHHHHHHcCCceEEEEehHhhHHCHHHHHHHHhcc
Confidence 357899999997 667889999999999666665433322 23444444433
No 159
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=42.37 E-value=71 Score=21.40 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=23.5
Q ss_pred CEEEEEeccccch-HHHHHHHHHHHHcCCCeEEEEEE
Q psy15570 27 RVAIMVDDMVDDV-HSFVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 27 k~vlivDDii~TG-~Tl~~~~~~L~~~ga~~v~~~~~ 62 (84)
+.+++++|.-+.. ..+..+++.+++.|.+ ++++..
T Consensus 109 ~iiil~sd~~~~~~~~~~~~~~~l~~~~I~-v~~Igi 144 (183)
T cd01453 109 EVLIIFSSLSTCDPGNIYETIDKLKKENIR-VSVIGL 144 (183)
T ss_pred EEEEEEcCCCcCChhhHHHHHHHHHHcCcE-EEEEEe
Confidence 4577778765442 3456788899998864 666664
No 160
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=42.24 E-value=72 Score=19.04 Aligned_cols=29 Identities=10% Similarity=0.049 Sum_probs=21.4
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCe
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYK 56 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~ 56 (84)
+++.++++ ..+|..-..++..|++.|.+.
T Consensus 65 ~~~~ivv~---C~~G~rs~~a~~~L~~~G~~~ 93 (109)
T cd01533 65 PRTPIVVN---CAGRTRSIIGAQSLINAGLPN 93 (109)
T ss_pred CCCeEEEE---CCCCchHHHHHHHHHHCCCCc
Confidence 45678887 456766666788999999865
No 161
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=42.14 E-value=1e+02 Score=24.52 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=33.9
Q ss_pred CCCCCCeeeeccCCCCEEEEEeccccchHHHHHHHHHHHHcCC
Q psy15570 12 AKEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGA 54 (84)
Q Consensus 12 ~~~~~~~~i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga 54 (84)
.+.++.|.+.|...+ ++++||-.=-=.-+.+.++.+|+.-.
T Consensus 310 ~GvkRRfe~~g~~~~--~~viDDYaHHPtEI~aTL~aaR~~~~ 350 (459)
T COG0773 310 QGVKRRFELKGEVNG--VTVIDDYAHHPTEIKATLAAARQKVP 350 (459)
T ss_pred CCcceeeEEeeeECC--EEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 455667888998877 99999988888888888899998865
No 162
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=41.45 E-value=74 Score=19.83 Aligned_cols=44 Identities=25% Similarity=0.421 Sum_probs=28.4
Q ss_pred cchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCc
Q psy15570 37 DDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDE 81 (84)
Q Consensus 37 ~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~ 81 (84)
++-..+...++.|++.|...+.+++- +-....-.+++.+.|++.
T Consensus 62 ~~~~~~~~~~~~L~~~~~~~i~i~~G-G~~~~~~~~~~~~~G~d~ 105 (122)
T cd02071 62 GHMTLFPEVIELLRELGAGDILVVGG-GIIPPEDYELLKEMGVAE 105 (122)
T ss_pred hhHHHHHHHHHHHHhcCCCCCEEEEE-CCCCHHHHHHHHHCCCCE
Confidence 44556677788999998865554442 322234467788888865
No 163
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=41.38 E-value=93 Score=20.54 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=32.5
Q ss_pred CCEEEEEeccccch---HHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCC
Q psy15570 26 GRVAIMVDDMVDDV---HSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESP 78 (84)
Q Consensus 26 gk~vlivDDii~TG---~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~ 78 (84)
.|.++++=|-.+++ ..+..+++.+++.|.. ++++.+ +-.....++.|...+
T Consensus 110 ~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~-i~~vgi-g~~~~~~L~~IA~~~ 163 (186)
T cd01480 110 NKFLLVITDGHSDGSPDGGIEKAVNEADHLGIK-IFFVAV-GSQNEEPLSRIACDG 163 (186)
T ss_pred ceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCE-EEEEec-CccchHHHHHHHcCC
Confidence 46777777776543 3567788889988877 666653 323345566665554
No 164
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=40.77 E-value=50 Score=20.72 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=22.1
Q ss_pred CEEEEEeccccchHHHHHHHHHHHHcCCCeE-EEEEEeccCC
Q psy15570 27 RVAIMVDDMVDDVHSFVAAAEVLKDRGAYKI-YVLATHGLLS 67 (84)
Q Consensus 27 k~vlivDDii~TG~Tl~~~~~~L~~~ga~~v-~~~~~h~~~s 67 (84)
...+|+|--.... ....+.+++.|.+.+ .++.+|.-..
T Consensus 15 ~~~iliD~g~~~~---~~~~~~l~~~~~~~i~~i~iTH~H~D 53 (183)
T smart00849 15 GGAILIDTGPGEA---EDLLAELKKLGPKDIDAIILTHGHPD 53 (183)
T ss_pred CceEEEeCCCChh---HHHHHHHHHcCchhhcEEEecccCcc
Confidence 3466777442222 244555777776666 5667887543
No 165
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=40.75 E-value=65 Score=17.85 Aligned_cols=31 Identities=6% Similarity=0.015 Sum_probs=24.2
Q ss_pred EEEEEeccccchHHHHHHHHHHHHcCCCeEEEE
Q psy15570 28 VAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVL 60 (84)
Q Consensus 28 ~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~ 60 (84)
+++++.++ |+.-+...++.+|+.|.....-+
T Consensus 2 ~~ll~~g~--~~~el~~~l~~~r~~~~~~~~kA 32 (58)
T PF12646_consen 2 EFLLFSGF--SGEELDKFLDALRKAGIPIPLKA 32 (58)
T ss_pred CEEEECCC--CHHHHHHHHHHHHHcCCCcceEE
Confidence 46777777 88999999999999998544333
No 166
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=40.18 E-value=1.5e+02 Score=22.00 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=32.1
Q ss_pred eeeeccCCCCEEEEEeccccc-hHH---HHHHHHHHHHcCCCeEEEEEE
Q psy15570 18 ISVVGDVGGRVAIMVDDMVDD-VHS---FVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 18 ~~i~g~v~gk~vlivDDii~T-G~T---l~~~~~~L~~~ga~~v~~~~~ 62 (84)
.++..++.|+.|+|+-..... -.. +...++++++.|++++.++..
T Consensus 48 v~i~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~alr~~~a~~i~lViP 96 (323)
T PRK02458 48 INIEESVRGDDIYIIQSTSFPVNDHLWELLIMIDACKRASANTVNVVLP 96 (323)
T ss_pred EEecCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcCCceEEEEEe
Confidence 445567899999999876432 223 334568999999999887774
No 167
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=40.17 E-value=76 Score=20.60 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=26.4
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
+++||+|+| +-+|.|-..++..|.+.| ++|..+.
T Consensus 164 ~~~~k~V~V----VG~G~SA~d~a~~l~~~g-~~V~~~~ 197 (203)
T PF13738_consen 164 DFKGKRVVV----VGGGNSAVDIAYALAKAG-KSVTLVT 197 (203)
T ss_dssp GCTTSEEEE----E--SHHHHHHHHHHTTTC-SEEEEEE
T ss_pred hcCCCcEEE----EcChHHHHHHHHHHHhhC-CEEEEEe
Confidence 467899986 689999999999999998 6777654
No 168
>PLN02389 biotin synthase
Probab=40.17 E-value=29 Score=26.42 Aligned_cols=40 Identities=15% Similarity=0.294 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCcCC
Q psy15570 41 SFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEVP 83 (84)
Q Consensus 41 Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i~ 83 (84)
.+..+++.+++.+ +.+.++.++++.+.+++|.++|++.++
T Consensus 154 ~i~eiir~ik~~~---l~i~~s~G~l~~E~l~~LkeAGld~~~ 193 (379)
T PLN02389 154 QILEYVKEIRGMG---MEVCCTLGMLEKEQAAQLKEAGLTAYN 193 (379)
T ss_pred HHHHHHHHHhcCC---cEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 4555666666554 345677888888999999999998654
No 169
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=39.52 E-value=49 Score=21.04 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=23.7
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 24 VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 24 v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
+....+++-+---+|-.++..+.+.+++.|.+++.+++
T Consensus 68 vp~~~I~~e~~s~~T~ena~~~~~~~~~~~~~~iilVT 105 (155)
T PF02698_consen 68 VPEERIILEPKSTNTYENARFSKRLLKERGWQSIILVT 105 (155)
T ss_dssp --GGGEEEE----SHHHHHHHHHHHHHT-SSS-EEEE-
T ss_pred cchheeEccCCCCCHHHHHHHHHHHHHhhcCCeEEEEC
Confidence 34456777777788888999999999999998777555
No 170
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=39.46 E-value=67 Score=22.04 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=30.4
Q ss_pred EEEecc--ccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHh
Q psy15570 30 IMVDDM--VDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLI 74 (84)
Q Consensus 30 livDDi--i~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l 74 (84)
.++=|+ -+-|.|....++.+.+.|+. .+++|+......++..
T Consensus 51 ~v~lD~K~~Dig~t~~~~~~~~~~~gad---~vTvh~~~g~~~l~~~ 94 (213)
T TIGR01740 51 LIFLDLKFADIPNTVKLQYESKIKQGAD---MVNVHGVAGSESVEAA 94 (213)
T ss_pred CEEEEEeecchHHHHHHHHHHHHhcCCC---EEEEcCCCCHHHHHHH
Confidence 566788 99999999999988888866 5667775444444443
No 171
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=39.08 E-value=94 Score=22.60 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=28.4
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
++++|+++| +-+|++-.+++-.|.+.|++++.++.
T Consensus 121 ~~~~k~vlv----lGaGGaarAi~~~l~~~g~~~i~i~n 155 (288)
T PRK12749 121 DIKGKTMVL----LGAGGASTAIGAQGAIEGLKEIKLFN 155 (288)
T ss_pred CcCCCEEEE----ECCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 356788876 56899988888889999999888776
No 172
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=38.87 E-value=56 Score=20.10 Aligned_cols=32 Identities=16% Similarity=-0.008 Sum_probs=24.4
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCC-CeEEE
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGA-YKIYV 59 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga-~~v~~ 59 (84)
+++.++++. .+|.....+++.|++.|. ..++.
T Consensus 71 ~~~~ivv~C---~~G~rs~~aa~~L~~~G~~~~v~~ 103 (122)
T cd01526 71 KDSPIYVVC---RRGNDSQTAVRKLKELGLERFVRD 103 (122)
T ss_pred CCCcEEEEC---CCCCcHHHHHHHHHHcCCccceee
Confidence 467888875 477777788899999999 55653
No 173
>PRK04194 hypothetical protein; Provisional
Probab=38.80 E-value=40 Score=26.04 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.5
Q ss_pred EeccccchHHHHHHHHHHHHcCCCeEEEE
Q psy15570 32 VDDMVDDVHSFVAAAEVLKDRGAYKIYVL 60 (84)
Q Consensus 32 vDDii~TG~Tl~~~~~~L~~~ga~~v~~~ 60 (84)
|||| ||.-+-.+.+.|.+.||..|+..
T Consensus 255 iDD~--t~E~lg~~~e~L~~~GAlDV~~t 281 (392)
T PRK04194 255 IDDL--SPEVLGYLFERLLEAGALDVFIT 281 (392)
T ss_pred CcCC--CHHHHHHHHHHHHHCCCceeeec
Confidence 5787 89999999999999999988743
No 174
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=38.59 E-value=1e+02 Score=19.34 Aligned_cols=13 Identities=23% Similarity=0.437 Sum_probs=7.6
Q ss_pred HHHHhhcCCCCcC
Q psy15570 70 APLLIEESPIDEV 82 (84)
Q Consensus 70 a~~~l~~~~i~~i 82 (84)
..+.++++|++++
T Consensus 112 vmd~~~~~G~~~v 124 (129)
T TIGR02801 112 VMALLKQAGIEKV 124 (129)
T ss_pred HHHHHHHcCCCeE
Confidence 4555566666554
No 175
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=38.41 E-value=9.7 Score=20.05 Aligned_cols=20 Identities=15% Similarity=0.084 Sum_probs=16.7
Q ss_pred eccccchHHHHHHHHHHHHc
Q psy15570 33 DDMVDDVHSFVAAAEVLKDR 52 (84)
Q Consensus 33 DDii~TG~Tl~~~~~~L~~~ 52 (84)
..+.+.|.|+..+.+.+++.
T Consensus 22 pg~~t~G~t~eea~~~~~ea 41 (48)
T PF03681_consen 22 PGCFTQGDTLEEALENAKEA 41 (48)
T ss_dssp CTCEEEESSHHHHHHHHHHH
T ss_pred cChhhcCCCHHHHHHHHHHH
Confidence 36689999999999988864
No 176
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=38.28 E-value=82 Score=22.12 Aligned_cols=36 Identities=25% Similarity=0.227 Sum_probs=25.7
Q ss_pred CEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCC
Q psy15570 27 RVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLS 67 (84)
Q Consensus 27 k~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s 67 (84)
+.+++||. |.. ....+.|++.|.+...++.||.-..
T Consensus 20 ~~~ilID~----g~~-~~i~~~l~~~g~~l~~Il~TH~H~D 55 (248)
T TIGR03413 20 GQAAVVDP----GEA-EPVLDALEARGLTLTAILLTHHHHD 55 (248)
T ss_pred CCEEEEcC----CCh-HHHHHHHHHcCCeeeEEEeCCCCcc
Confidence 46788884 332 4566788888877778889997554
No 177
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=38.13 E-value=47 Score=23.11 Aligned_cols=17 Identities=18% Similarity=0.175 Sum_probs=14.6
Q ss_pred ccchHHHHHHHHHHHHc
Q psy15570 36 VDDVHSFVAAAEVLKDR 52 (84)
Q Consensus 36 i~TG~Tl~~~~~~L~~~ 52 (84)
++||+|...+++.|.+.
T Consensus 21 ldsGST~~~l~~~L~~~ 37 (213)
T cd01398 21 LGTGSTVAYFIEALGER 37 (213)
T ss_pred ECchHHHHHHHHHHHHh
Confidence 46999999999999765
No 178
>TIGR00299 conserved hypothetical protein TIGR00299. Members of this family are found in the Archaea and in several different bacteria lineages. The function in unknown and the genomic context is not well conserved.
Probab=37.88 E-value=43 Score=25.83 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=23.4
Q ss_pred EeccccchHHHHHHHHHHHHcCCCeEEEE
Q psy15570 32 VDDMVDDVHSFVAAAEVLKDRGAYKIYVL 60 (84)
Q Consensus 32 vDDii~TG~Tl~~~~~~L~~~ga~~v~~~ 60 (84)
|||| ||.-+-.+.+.|.+.||..++..
T Consensus 254 iDD~--t~E~lg~~~e~L~~~GAlDV~~t 280 (382)
T TIGR00299 254 VDDI--SGEALGYLLESLLEQGALDVFTI 280 (382)
T ss_pred CcCC--CHHHHHHHHHHHHHCCCceeeec
Confidence 5787 89999999999999999988743
No 179
>PF03192 DUF257: Pyrococcus protein of unknown function, DUF257; InterPro: IPR005489 This family of proteins is of unknown function.; PDB: 2EKD_C.
Probab=37.67 E-value=21 Score=25.13 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=17.3
Q ss_pred EEEEEeccccchHHHHHHHHHHHHcCCC
Q psy15570 28 VAIMVDDMVDDVHSFVAAAEVLKDRGAY 55 (84)
Q Consensus 28 ~vlivDDii~TG~Tl~~~~~~L~~~ga~ 55 (84)
.-++|||+.||+..+. ..|+-.|..
T Consensus 40 ~~vlI~DilDtl~i~~---~~l~~~Gi~ 64 (210)
T PF03192_consen 40 YPVLIDDILDTLHIYK---KHLELMGID 64 (210)
T ss_dssp S-BEEEEETTHHHHHH---HHHHHTT--
T ss_pred CCEEEEEcCCCHHHHH---HHHHHcCCC
Confidence 3568899999999988 456655643
No 180
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=37.67 E-value=94 Score=19.30 Aligned_cols=29 Identities=10% Similarity=-0.078 Sum_probs=22.0
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCC
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAY 55 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~ 55 (84)
+++.+++.++ .+|.+-..++..|+..|.+
T Consensus 85 ~~~~vvvyC~--~~G~rs~~a~~~L~~~G~~ 113 (128)
T cd01520 85 RDPKLLIYCA--RGGMRSQSLAWLLESLGID 113 (128)
T ss_pred CCCeEEEEeC--CCCccHHHHHHHHHHcCCc
Confidence 5788999987 4455556677889999984
No 181
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=37.52 E-value=1e+02 Score=22.45 Aligned_cols=34 Identities=21% Similarity=0.022 Sum_probs=28.4
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 24 VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 24 v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
+++|+++| +-+|++-..++-.|.+.|++++.++-
T Consensus 125 ~~~k~vli----lGaGGaarAi~~aL~~~g~~~i~i~n 158 (283)
T PRK14027 125 AKLDSVVQ----VGAGGVGNAVAYALVTHGVQKLQVAD 158 (283)
T ss_pred cCCCeEEE----ECCcHHHHHHHHHHHHCCCCEEEEEc
Confidence 45777765 67999999999999999999887765
No 182
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=36.63 E-value=1.1e+02 Score=20.22 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=27.1
Q ss_pred cCCCCEEEEEeccccch--------HHHHHHHHHHHHcCCCeEEEEE
Q psy15570 23 DVGGRVAIMVDDMVDDV--------HSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG--------~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
+++||-|++....-+.. ++...-.+..+++||.-+.++.
T Consensus 47 DVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~ 93 (137)
T cd04820 47 DVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLT 93 (137)
T ss_pred CCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEe
Confidence 68899887776553211 2456667899999999776665
No 183
>PLN02160 thiosulfate sulfurtransferase
Probab=36.29 E-value=87 Score=20.00 Aligned_cols=44 Identities=11% Similarity=-0.024 Sum_probs=31.6
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCC
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESP 78 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~ 78 (84)
++++++++ ..+|..-..++..|++.|.+.++.+ .++...+.+.|
T Consensus 80 ~~~~Iivy---C~sG~RS~~Aa~~L~~~G~~~v~~l-------~GG~~~W~~~g 123 (136)
T PLN02160 80 PADDILVG---CQSGARSLKATTELVAAGYKKVRNK-------GGGYLAWVDHS 123 (136)
T ss_pred CCCcEEEE---CCCcHHHHHHHHHHHHcCCCCeeec-------CCcHHHHhhCC
Confidence 46777776 5799999999999999998876532 24455565554
No 184
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=36.18 E-value=66 Score=24.78 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=30.2
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEec
Q psy15570 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHG 64 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~ 64 (84)
+++||+|++ |-+|.|-...+..|.+.| ++|..+.=++
T Consensus 172 ~~~GKrV~V----IG~GaSA~di~~~l~~~g-a~vt~~qRs~ 208 (443)
T COG2072 172 DLRGKRVLV----IGAGASAVDIAPELAEVG-ASVTLSQRSP 208 (443)
T ss_pred ccCCCeEEE----ECCCccHHHHHHHHHhcC-CeeEEEecCC
Confidence 578999997 579999999999999999 6676665333
No 185
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=36.13 E-value=1.3e+02 Score=22.84 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=34.1
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCcCC
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEVP 83 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i~ 83 (84)
+++.++++.+ +|.....++..|++.|.+.++.+ ..+...+....-...|
T Consensus 342 ~d~~iVvyC~---~G~rS~~aa~~L~~~G~~~V~~L-------~GG~~~W~~~~~~~~p 390 (392)
T PRK07878 342 QDRTIVLYCK---TGVRSAEALAALKKAGFSDAVHL-------QGGVVAWAKQVDPSLP 390 (392)
T ss_pred CCCcEEEEcC---CChHHHHHHHHHHHcCCCcEEEe-------cCcHHHHHHhcCCCCC
Confidence 5778888864 78888889999999998877532 2345555554444555
No 186
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=35.39 E-value=99 Score=24.16 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=31.5
Q ss_pred eeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 20 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 20 i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
+.|+++++++++ +-.|.+..-+++.|.+.|+..+.++-
T Consensus 172 ~~~~L~~~~vlv----IGAGem~~lva~~L~~~g~~~i~IaN 209 (414)
T COG0373 172 IFGSLKDKKVLV----IGAGEMGELVAKHLAEKGVKKITIAN 209 (414)
T ss_pred HhcccccCeEEE----EcccHHHHHHHHHHHhCCCCEEEEEc
Confidence 345688999998 46899999999999999998887654
No 187
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=35.37 E-value=16 Score=25.94 Aligned_cols=30 Identities=7% Similarity=-0.013 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHcCCCeEEEEEEeccCCC
Q psy15570 39 VHSFVAAAEVLKDRGAYKIYVLATHGLLSS 68 (84)
Q Consensus 39 G~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~ 68 (84)
|++=....+.+++..+..+.++.+||+|-+
T Consensus 79 ~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~ 108 (258)
T PF02153_consen 79 GSVKAPIVEAMERLLPEGVRFVGGHPMAGP 108 (258)
T ss_dssp -S-CHHHHHHHHHHHTSSGEEEEEEESCST
T ss_pred CCCCHHHHHHHHHhcCcccceeecCCCCCC
Confidence 333334445555665667889999999865
No 188
>PRK15108 biotin synthase; Provisional
Probab=34.96 E-value=51 Score=24.60 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCc
Q psy15570 38 DVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDE 81 (84)
Q Consensus 38 TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~ 81 (84)
+-.-+..+++.+++.+.. .+++.+.++.+.+++|.++|++.
T Consensus 109 ~~e~i~~~i~~ik~~~i~---v~~s~G~ls~e~l~~LkeAGld~ 149 (345)
T PRK15108 109 DMPYLEQMVQGVKAMGLE---TCMTLGTLSESQAQRLANAGLDY 149 (345)
T ss_pred hHHHHHHHHHHHHhCCCE---EEEeCCcCCHHHHHHHHHcCCCE
Confidence 344566777778876643 33556778889999999999884
No 189
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=34.76 E-value=48 Score=23.43 Aligned_cols=18 Identities=11% Similarity=0.039 Sum_probs=15.0
Q ss_pred cccchHHHHHHHHHHHHc
Q psy15570 35 MVDDVHSFVAAAEVLKDR 52 (84)
Q Consensus 35 ii~TG~Tl~~~~~~L~~~ 52 (84)
.++||+|...+++.|.+.
T Consensus 25 gLgsGST~~~l~~~L~~~ 42 (220)
T PRK00702 25 GLGTGSTAAYFIDALGER 42 (220)
T ss_pred EECCcHHHHHHHHHHHhh
Confidence 357999999999999765
No 190
>PLN02428 lipoic acid synthase
Probab=34.75 E-value=1.3e+02 Score=22.89 Aligned_cols=56 Identities=21% Similarity=0.139 Sum_probs=35.2
Q ss_pred CEEEEE----eccccchH-HHHHHHHHHHHcCCCeEEEEEEecc--CCCCHHHHhhcCCCCcCC
Q psy15570 27 RVAIMV----DDMVDDVH-SFVAAAEVLKDRGAYKIYVLATHGL--LSSDAPLLIEESPIDEVP 83 (84)
Q Consensus 27 k~vliv----DDii~TG~-Tl~~~~~~L~~~ga~~v~~~~~h~~--~s~~a~~~l~~~~i~~i~ 83 (84)
+.++|+ ||.-+-|. .+..+++.+++..+. +.+-+..+- ...+.+++|.++|++.++
T Consensus 148 k~vvltSg~rddl~D~ga~~~~elir~Ir~~~P~-i~Ie~L~pdf~~d~elL~~L~eAG~d~i~ 210 (349)
T PLN02428 148 DYVVLTSVDRDDLPDGGSGHFAETVRRLKQLKPE-ILVEALVPDFRGDLGAVETVATSGLDVFA 210 (349)
T ss_pred CEEEEEEcCCCCCCcccHHHHHHHHHHHHHhCCC-cEEEEeCccccCCHHHHHHHHHcCCCEEc
Confidence 466665 55544444 677788999987654 333332222 245689999999987654
No 191
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=34.54 E-value=34 Score=22.76 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=26.4
Q ss_pred cchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCC
Q psy15570 37 DDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPID 80 (84)
Q Consensus 37 ~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~ 80 (84)
+|-.--..++.++...|.++|+.... ......+.+.|+++||+
T Consensus 92 vT~ePC~~Ca~ai~~agI~~Vvy~~~-~~~~~~~~~~l~~~gi~ 134 (151)
T TIGR02571 92 VTHFPCLQCTKSIIQAGIKKIYYAQD-YHNHPYAIELFEQAGVE 134 (151)
T ss_pred EeCCCcHHHHHHHHHhCCCEEEEccC-CCCcHHHHHHHHHCCCE
Confidence 34444456778888888888765532 11123467778888764
No 192
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=34.43 E-value=58 Score=22.97 Aligned_cols=36 Identities=11% Similarity=0.056 Sum_probs=25.4
Q ss_pred CEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCC
Q psy15570 27 RVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLS 67 (84)
Q Consensus 27 k~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s 67 (84)
+.+++||.- . .....+.+++.|.+...++.||.-..
T Consensus 22 ~~~ilIDpg----~-~~~vl~~l~~~g~~l~~IllTH~H~D 57 (251)
T PRK10241 22 GRCLIVDPG----E-AEPVLNAIAENNWQPEAIFLTHHHHD 57 (251)
T ss_pred CcEEEECCC----C-hHHHHHHHHHcCCccCEEEeCCCCch
Confidence 457788853 2 24567788888877668889997653
No 193
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=34.40 E-value=1e+02 Score=22.26 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=13.1
Q ss_pred EEEEEeccccchHHHHHHHHHHHHcC
Q psy15570 28 VAIMVDDMVDDVHSFVAAAEVLKDRG 53 (84)
Q Consensus 28 ~vlivDDii~TG~Tl~~~~~~L~~~g 53 (84)
.++|+|=-+.-|.-+. .+..+++..
T Consensus 48 DLILLDiYmPd~~Gi~-lL~~ir~~~ 72 (224)
T COG4565 48 DLILLDIYMPDGNGIE-LLPELRSQH 72 (224)
T ss_pred CEEEEeeccCCCccHH-HHHHHHhcC
Confidence 5666666665555543 334444443
No 194
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=34.16 E-value=96 Score=18.72 Aligned_cols=34 Identities=21% Similarity=0.054 Sum_probs=24.3
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEE
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVL 60 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~ 60 (84)
+++.+++++.-- |.....++..|+..|.+.++.+
T Consensus 78 ~~~~vv~~c~~g--~~~a~~~~~~l~~~G~~~v~~l 111 (122)
T cd01448 78 NDDTVVVYDDGG--GFFAARAWWTLRYFGHENVRVL 111 (122)
T ss_pred CCCEEEEECCCC--CccHHHHHHHHHHcCCCCEEEe
Confidence 477888886432 4666667788999998877633
No 195
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=33.80 E-value=1.3e+02 Score=22.28 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=34.0
Q ss_pred CEEEEE----eccccch-HHHHHHHHHHHHcCC-CeEEEEEEeccCCCCHHHHhhcCCCCc
Q psy15570 27 RVAIMV----DDMVDDV-HSFVAAAEVLKDRGA-YKIYVLATHGLLSSDAPLLIEESPIDE 81 (84)
Q Consensus 27 k~vliv----DDii~TG-~Tl~~~~~~L~~~ga-~~v~~~~~h~~~s~~a~~~l~~~~i~~ 81 (84)
+.++|. ||.-+.| ..+..+++.+++..+ ..+.+++..+.-..+.++.+.++|.+.
T Consensus 109 kevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~l~~aG~dv 169 (302)
T TIGR00510 109 KYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDILLDAPPDV 169 (302)
T ss_pred CEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHHHHHcCchh
Confidence 567776 6765544 378888999988643 345554432211345777788877653
No 196
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=33.65 E-value=1.1e+02 Score=18.55 Aligned_cols=32 Identities=13% Similarity=0.017 Sum_probs=24.2
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEE
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYV 59 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~ 59 (84)
+++.++++ ..+|.....++..|++.|...+..
T Consensus 57 ~~~~vvly---C~~G~rS~~aa~~L~~~G~~~v~~ 88 (101)
T TIGR02981 57 KNDTVKLY---CNAGRQSGMAKDILLDMGYTHAEN 88 (101)
T ss_pred CCCeEEEE---eCCCHHHHHHHHHHHHcCCCeEEe
Confidence 35567665 467888888889999999887653
No 197
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=33.49 E-value=83 Score=21.23 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=27.8
Q ss_pred ccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhh
Q psy15570 34 DMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIE 75 (84)
Q Consensus 34 Dii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~ 75 (84)
|+.. -.-+..+.+.|+++|+..|+....|. +++++.|.
T Consensus 101 DLae-d~dI~~~~~~L~eaGa~~IF~~s~~d---~~gv~~l~ 138 (148)
T COG4917 101 DLAE-DADISLVKRWLREAGAEPIFETSAVD---NQGVEELV 138 (148)
T ss_pred cccc-hHhHHHHHHHHHHcCCcceEEEeccC---cccHHHHH
Confidence 5543 45677788999999999999988654 56665553
No 198
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=33.45 E-value=1.2e+02 Score=20.01 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=27.6
Q ss_pred cCCCCEEEEEecccc-------chH-------HHHHHHHHHHHcCCCeEEEEEE
Q psy15570 23 DVGGRVAIMVDDMVD-------DVH-------SFVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 23 ~v~gk~vlivDDii~-------TG~-------Tl~~~~~~L~~~ga~~v~~~~~ 62 (84)
|++||-|++..+--. +|+ ++..=.+..+++||.-+.++..
T Consensus 45 DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~ 98 (142)
T cd04814 45 DVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHE 98 (142)
T ss_pred CCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeC
Confidence 789998888755321 111 4666678999999997776653
No 199
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=33.40 E-value=1.3e+02 Score=20.23 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=25.3
Q ss_pred cCCCCEEEEEeccc--cc-------h------HHHHHHHHHHHHcCCCeEEEEE
Q psy15570 23 DVGGRVAIMVDDMV--DD-------V------HSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 23 ~v~gk~vlivDDii--~T-------G------~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
|++||-|+++.+-- .+ | ++...=.+..+++||.-+..+.
T Consensus 47 DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~ 100 (157)
T cd04821 47 DVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVH 100 (157)
T ss_pred CcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEe
Confidence 78999998883321 11 1 2334456889999998666553
No 200
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=33.09 E-value=74 Score=21.66 Aligned_cols=34 Identities=29% Similarity=0.327 Sum_probs=21.3
Q ss_pred CEEEEE-eccccch-HHHHHHHHHHHHcCCCeEEEEE
Q psy15570 27 RVAIMV-DDMVDDV-HSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 27 k~vliv-DDii~TG-~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
|.+||+ ||--..+ .....+++.|++.|.. ++++.
T Consensus 133 kvvIllTDg~~~~~~~~~~~~a~~l~~~GI~-i~tVG 168 (193)
T cd01477 133 KVVIVFASDYNDEGSNDPRPIAARLKSTGIA-IITVA 168 (193)
T ss_pred eEEEEEecCccCCCCCCHHHHHHHHHHCCCE-EEEEE
Confidence 434444 7655444 3466778889999866 55554
No 201
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=32.81 E-value=1.6e+02 Score=21.15 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=26.9
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 24 VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 24 v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
+++|+++|+ -+|+.-.+++..|.+.|++++.++.
T Consensus 124 ~~~k~vlI~----GAGGagrAia~~La~~G~~~V~I~~ 157 (289)
T PRK12548 124 VKGKKLTVI----GAGGAATAIQVQCALDGAKEITIFN 157 (289)
T ss_pred cCCCEEEEE----CCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 467888764 5688888888999999999877665
No 202
>PRK11024 colicin uptake protein TolR; Provisional
Probab=32.65 E-value=1.4e+02 Score=19.21 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=6.7
Q ss_pred HHHHhhcCCCCcC
Q psy15570 70 APLLIEESPIDEV 82 (84)
Q Consensus 70 a~~~l~~~~i~~i 82 (84)
..+.+++.|+.++
T Consensus 122 vmd~~k~aG~~~v 134 (141)
T PRK11024 122 ALNLLHSAGVKSV 134 (141)
T ss_pred HHHHHHHcCCCeE
Confidence 4445555665543
No 203
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=32.27 E-value=69 Score=19.07 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=20.3
Q ss_pred CCEEEEEeccccchHHHHHHHHHHHHcCCCeEE
Q psy15570 26 GRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIY 58 (84)
Q Consensus 26 gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~ 58 (84)
++.++++- .+|.+...++..|++.|...++
T Consensus 58 ~~~ivv~c---~~g~~s~~a~~~L~~~G~~~v~ 87 (108)
T PRK00162 58 DTPVMVMC---YHGNSSQGAAQYLLQQGFDVVY 87 (108)
T ss_pred CCCEEEEe---CCCCCHHHHHHHHHHCCchheE
Confidence 55566553 3566666677889999988665
No 204
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=32.17 E-value=1.4e+02 Score=19.20 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=8.1
Q ss_pred chHHHHHHHHHHHHcCCCeE
Q psy15570 38 DVHSFVAAAEVLKDRGAYKI 57 (84)
Q Consensus 38 TG~Tl~~~~~~L~~~ga~~v 57 (84)
+-+++..+.+.+++.|..++
T Consensus 111 ~~~~vv~vmd~l~~aG~~~v 130 (141)
T PRK11267 111 DYETLMKVMDTLHQAGYLKI 130 (141)
T ss_pred CHHHHHHHHHHHHHcCCCeE
Confidence 33334444444444444433
No 205
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=32.15 E-value=1.4e+02 Score=22.23 Aligned_cols=41 Identities=17% Similarity=0.361 Sum_probs=30.8
Q ss_pred CCCCEEEEEecccc-chHHHHHHHHHHHHcCCCeEEEEEEec
Q psy15570 24 VGGRVAIMVDDMVD-DVHSFVAAAEVLKDRGAYKIYVLATHG 64 (84)
Q Consensus 24 v~gk~vlivDDii~-TG~Tl~~~~~~L~~~ga~~v~~~~~h~ 64 (84)
..+++|+|||+.=. |.....+..+.|.+-....++.+++|.
T Consensus 104 ~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~ 145 (328)
T PRK05707 104 LGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQ 145 (328)
T ss_pred cCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECC
Confidence 35788999988755 556677788888887667777777765
No 206
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=31.98 E-value=45 Score=24.69 Aligned_cols=39 Identities=23% Similarity=0.141 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCC
Q psy15570 39 VHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPI 79 (84)
Q Consensus 39 G~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i 79 (84)
|-++...++.|.+.|.+.|.+++. -|..+..+.|.+.++
T Consensus 240 ~P~~~~~l~~l~~~G~~~V~v~p~--gFv~D~lETl~eidi 278 (316)
T PF00762_consen 240 GPSTEDVLEELAKEGVKRVVVVPP--GFVSDCLETLYEIDI 278 (316)
T ss_dssp SSBHHHHHHHHHHCT-SEEEEEET--T-SSSSHHHHCCCCC
T ss_pred cccHHHHHHHHHhcCCCeEEEECC--ccccccHhHHHHHHH
Confidence 334667788999999998888774 466777888877654
No 207
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=31.84 E-value=2.2e+02 Score=23.67 Aligned_cols=37 Identities=8% Similarity=0.087 Sum_probs=26.1
Q ss_pred CCCCEEEE-EeccccchHHHHHHHHHHHHcCCCeEEEEEE
Q psy15570 24 VGGRVAIM-VDDMVDDVHSFVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 24 v~gk~vli-vDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~ 62 (84)
+.+|.|+| +||-..+=. ..+...|+++|..-++++++
T Consensus 104 LP~K~VaLTFDDGy~s~y--t~A~PILkkygvpATfFlvg 141 (671)
T PRK14582 104 LPEKAVLLTFDDGYSSFY--TRVFPILQAFQWPAVWAPVG 141 (671)
T ss_pred CCCCeEEEEEEcCCCchH--HHHHHHHHHcCCCEEEEEec
Confidence 34555555 999887644 46889999999886655443
No 208
>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff.
Probab=31.83 E-value=29 Score=24.20 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=38.2
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCH
Q psy15570 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDA 70 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a 70 (84)
.+++.++|+...=.-+|+|=..|.-+|+.+|.+.|.+-..-.+|..++
T Consensus 66 ~~~~~~IlVaG~NFGcGSSREhA~~aL~~~Gi~aVIA~SFa~IF~rN~ 113 (188)
T TIGR00171 66 QYQGASILLARENFGCGSSREHAPWALDDYGFKVIIAPSFADIFYNNS 113 (188)
T ss_pred ccCCCcEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHH
Confidence 467788999999999999999999999999999776555434444333
No 209
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=31.80 E-value=35 Score=23.98 Aligned_cols=45 Identities=16% Similarity=0.064 Sum_probs=36.3
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCC
Q psy15570 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLS 67 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s 67 (84)
.+++-++|+...=.-+|+|=..|+..|+.+|.+-|.+-+.-.+|.
T Consensus 64 ~~~~~~IlVaG~NFGcGSSRE~A~~al~~~Gi~aVIA~SFa~IF~ 108 (200)
T PRK01641 64 RYQGASILLAGDNFGCGSSREHAPWALADYGFRAVIAPSFADIFY 108 (200)
T ss_pred ccCCCeEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHH
Confidence 356778999999999999999999999999998776544333333
No 210
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=31.77 E-value=2e+02 Score=20.88 Aligned_cols=52 Identities=17% Similarity=0.097 Sum_probs=32.2
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCC----CCHHHHhhcCCCC
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLS----SDAPLLIEESPID 80 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s----~~a~~~l~~~~i~ 80 (84)
+|++++|+. .|.+-.+++..|.+.|+++|.++.-..... ....+++.+.+++
T Consensus 171 ~g~~vvViG----~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~ 226 (352)
T PRK12770 171 EGKKVVVVG----AGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVE 226 (352)
T ss_pred CCCEEEEEC----CCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCE
Confidence 478888875 466777778888888988777664322211 2234455555554
No 211
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=31.76 E-value=85 Score=21.16 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEEeccCCC
Q psy15570 40 HSFVAAAEVLKDRGAYKIYVLATHGLLSS 68 (84)
Q Consensus 40 ~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~ 68 (84)
.-+.++++.+++.|+..+-++..|....+
T Consensus 134 ~~v~~~~~~l~~~gv~avAV~~~fS~~np 162 (176)
T PF05378_consen 134 DEVREALRELKDKGVEAVAVSLLFSYRNP 162 (176)
T ss_pred HHHHHHHHHHHhCCCCEEEEECccCCCCH
Confidence 34788899999999988888876665543
No 212
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=31.72 E-value=97 Score=23.19 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=26.0
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEE
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYV 59 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~ 59 (84)
+++.++++++ +|..-..+++.|++.|.+.++.
T Consensus 56 ~~~~IvvyC~---~G~rs~~aa~~L~~~G~~~v~~ 87 (376)
T PRK08762 56 RDREIVLICA---SGTRSAHAAATLRELGYTRVAS 87 (376)
T ss_pred CCCeEEEEcC---CCcHHHHHHHHHHHcCCCceEe
Confidence 5788999886 6777677889999999987764
No 213
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=31.49 E-value=1.3e+02 Score=23.31 Aligned_cols=52 Identities=19% Similarity=0.207 Sum_probs=37.1
Q ss_pred CCEEEEEe-ccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCC
Q psy15570 26 GRVAIMVD-DMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESP 78 (84)
Q Consensus 26 gk~vlivD-Dii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~ 78 (84)
+|.|+.+= --=||.-+...++...++.+.+..++++.|-+ .+++++.|.+++
T Consensus 130 ~k~vVF~avGFETTaP~~A~~i~~A~~~~~~Nfsvl~~hkl-~PPa~~~ll~~~ 182 (364)
T PRK15062 130 DKEVVFFAIGFETTAPATAATLLQAKAEGLKNFSVLSSHKL-VPPAMRALLEDP 182 (364)
T ss_pred CCeEEEEecCchhccHHHHHHHHHHHHcCCCCEEEEEeccc-cHHHHHHHHcCC
Confidence 45554442 22356666666667777889999999999985 588999887765
No 214
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=31.42 E-value=2.3e+02 Score=21.58 Aligned_cols=30 Identities=33% Similarity=0.521 Sum_probs=22.8
Q ss_pred EEEEEecc-ccchHHHHHHHHHHHHcCCCeE
Q psy15570 28 VAIMVDDM-VDDVHSFVAAAEVLKDRGAYKI 57 (84)
Q Consensus 28 ~vlivDDi-i~TG~Tl~~~~~~L~~~ga~~v 57 (84)
.+.++||- -.+=.++.++++.|++...+++
T Consensus 326 g~~iIDDsYn~nP~s~~aaL~~l~~~~~r~i 356 (453)
T PRK10773 326 GQLLLDDSYNANVGSMTAAAQVLAEMPGYRV 356 (453)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 37889994 5567899999999998743444
No 215
>PRK09989 hypothetical protein; Provisional
Probab=31.27 E-value=39 Score=23.52 Aligned_cols=16 Identities=13% Similarity=0.003 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHcCCC
Q psy15570 40 HSFVAAAEVLKDRGAY 55 (84)
Q Consensus 40 ~Tl~~~~~~L~~~ga~ 55 (84)
.+...+.+.+++.|.+
T Consensus 40 ~~~~~~~~~l~~~Gl~ 55 (258)
T PRK09989 40 YSTLQIQKQLEQNHLT 55 (258)
T ss_pred CCHHHHHHHHHHcCCc
Confidence 3455666667777755
No 216
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=30.94 E-value=1.9e+02 Score=20.59 Aligned_cols=40 Identities=10% Similarity=0.227 Sum_probs=26.6
Q ss_pred CeeeeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 17 PISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 17 ~~~i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
-|.+.-+++|++|++| --|.--..=++.|.+.|+. |.+++
T Consensus 16 ~~pi~l~~~~~~VLVV----GGG~VA~RK~~~Ll~~gA~-VtVVa 55 (223)
T PRK05562 16 YMFISLLSNKIKVLII----GGGKAAFIKGKTFLKKGCY-VYILS 55 (223)
T ss_pred EeeeEEECCCCEEEEE----CCCHHHHHHHHHHHhCCCE-EEEEc
Confidence 3444446789999986 3444444457888889876 66666
No 217
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=30.86 E-value=1.5e+02 Score=21.38 Aligned_cols=34 Identities=12% Similarity=0.072 Sum_probs=27.7
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 24 VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 24 v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
+++++++| +-+|+.-..++..|.+.|++++.++-
T Consensus 125 ~~~k~vlI----lGaGGaaraia~aL~~~G~~~I~I~n 158 (284)
T PRK12549 125 ASLERVVQ----LGAGGAGAAVAHALLTLGVERLTIFD 158 (284)
T ss_pred ccCCEEEE----ECCcHHHHHHHHHHHHcCCCEEEEEC
Confidence 56777775 68999999999999999998876554
No 218
>TIGR00070 hisG ATP phosphoribosyltransferase. Members of this family from B. subtilis, Aquifex aeolicus, and Synechocystis PCC6803 (and related taxa) lack the C-terminal third of the sequence. The sole homolog from Archaeoglobus fulgidus lacks the N-terminal 50 residues (as reported) and is otherwise atypical of the rest of the family. This model excludes the C-terminal extension.
Probab=30.64 E-value=26 Score=24.20 Aligned_cols=14 Identities=14% Similarity=0.204 Sum_probs=11.2
Q ss_pred EEeccccchHHHHH
Q psy15570 31 MVDDMVDDVHSFVA 44 (84)
Q Consensus 31 ivDDii~TG~Tl~~ 44 (84)
.|=|++.||+|+.+
T Consensus 151 ~IvDiv~TG~TL~~ 164 (182)
T TIGR00070 151 AIVDIVSTGTTLRE 164 (182)
T ss_pred EEEEEeCCHHHHHH
Confidence 44589999999875
No 219
>TIGR01699 XAPA xanthosine phosphorylase. (TIGR01698, TIGR01700).
Probab=30.59 E-value=2e+02 Score=20.71 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=30.3
Q ss_pred eeeccCCCCEEEEEecccc--chH--HH-HHHHHHHHHcCCCeEEEEEEeccC
Q psy15570 19 SVVGDVGGRVAIMVDDMVD--DVH--SF-VAAAEVLKDRGAYKIYVLATHGLL 66 (84)
Q Consensus 19 ~i~g~v~gk~vlivDDii~--TG~--Tl-~~~~~~L~~~ga~~v~~~~~h~~~ 66 (84)
.+.|.+.|+.|+++--..= .|. +. ..-+..|++.|++.+....+-+-+
T Consensus 43 l~~G~l~g~~Vv~~~Gr~h~y~g~~~~~~~~~i~~l~~lGv~~iI~t~aaG~l 95 (248)
T TIGR01699 43 LVLGHLQGVPVVCMKGRGHFYEGRGMTIMTDAIRTFKLLGCELLFCTNAAGSL 95 (248)
T ss_pred EEEEEECCEEEEEEeCCCcccCCcchhhhcchHHHHHHcCCCEEEEecceecc
Confidence 4578899999988631110 111 22 224688999999988777654533
No 220
>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation
Probab=30.58 E-value=2.3e+02 Score=21.08 Aligned_cols=48 Identities=27% Similarity=0.265 Sum_probs=26.7
Q ss_pred ccCC-CCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhh
Q psy15570 22 GDVG-GRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIE 75 (84)
Q Consensus 22 g~v~-gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~ 75 (84)
+++. |.+++++|| ||+=+..+ .+.+.|..--.+...|+ -+++....+.
T Consensus 197 aNV~~g~r~Lv~D~---~~GLv~aa--v~eRmgg~G~i~~~~~~-~~~p~~~~l~ 245 (299)
T PF04189_consen 197 ANVHAGGRVLVVDD---CGGLVVAA--VAERMGGSGNIITLHHG-NSPPNLDILK 245 (299)
T ss_pred cCCCCCCeEEEEeC---CCChHHHH--HHHHhCCCceEEEEeeC-CCCCCHHHHH
Confidence 3443 889999999 66655543 56666655333333334 2334444343
No 221
>TIGR01573 cas2 CRISPR-associated endoribonuclease Cas2. This model describes most members of the family of Cas2, one of the first four protein families found to mark prokaryotic genomes that contain multiple CRISPR elements. It is an endoribonuclease, capable of cleaving single-stranded RNA. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats. The cas genes are found near the repeats. A distinct branch of the Cas2 family shows a very low level of sequence identity and is modeled by TIGR01873 instead.
Probab=30.45 E-value=1.3e+02 Score=18.17 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=23.2
Q ss_pred EEEEEeccccch--HHHHHHHHHHHHcCCCeE
Q psy15570 28 VAIMVDDMVDDV--HSFVAAAEVLKDRGAYKI 57 (84)
Q Consensus 28 ~vlivDDii~TG--~Tl~~~~~~L~~~ga~~v 57 (84)
.++++=|+-+.+ .......+.|++.|...+
T Consensus 2 ~~lV~YDI~~~~~~k~r~kv~k~L~~~G~~rv 33 (95)
T TIGR01573 2 LVLVVYDIPTDGERKRRRKLRKLLEKYGLQRV 33 (95)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHcchhhe
Confidence 367888888776 677888999999994443
No 222
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=30.42 E-value=64 Score=21.08 Aligned_cols=44 Identities=25% Similarity=0.265 Sum_probs=29.7
Q ss_pred CCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCC
Q psy15570 26 GRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPI 79 (84)
Q Consensus 26 gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i 79 (84)
++.++| +..|-|+...++.|++..-+.+..++ ..+.+.+.+.|+
T Consensus 24 ~~~~~I----vgaGPSL~~~i~~lk~~~~~~~iia~------~sa~~~L~~~gI 67 (170)
T PF01973_consen 24 GKPAII----VGAGPSLDKNIELLKENRNKAIIIAV------NSALKALLKNGI 67 (170)
T ss_pred CCeEEE----EecCCCHHHHHHHHHhcccCcEEEEe------cHHHHHHHHcCc
Confidence 488887 58999999999999887644333333 345555555544
No 223
>PF09861 DUF2088: Domain of unknown function (DUF2088); InterPro: IPR018657 This domain, found in various hypothetical proteins, has no known function. ; PDB: 2YJG_B.
Probab=30.38 E-value=1.9e+02 Score=20.11 Aligned_cols=36 Identities=33% Similarity=0.432 Sum_probs=20.8
Q ss_pred CCEEEEEeccccch---HHHHHHHHHHHHcCC--CeEEEEE
Q psy15570 26 GRVAIMVDDMVDDV---HSFVAAAEVLKDRGA--YKIYVLA 61 (84)
Q Consensus 26 gk~vlivDDii~TG---~Tl~~~~~~L~~~ga--~~v~~~~ 61 (84)
.+-++++||.-... .-+..+.+.|+++|. ..+.+++
T Consensus 55 ~~V~Ivv~D~TRp~p~~~il~~ll~~L~~~Gv~~~~i~ii~ 95 (204)
T PF09861_consen 55 KRVAIVVDDITRPTPSDLILPALLEELEEAGVKDEDITIII 95 (204)
T ss_dssp SEEEEEEE-TTS---HHHHHHHHHHHHHT-T-TT-EEEEEE
T ss_pred CeEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCccCEEEEE
Confidence 45677888987653 345667899999887 3455554
No 224
>PRK06256 biotin synthase; Validated
Probab=30.34 E-value=1.2e+02 Score=22.12 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=34.7
Q ss_pred CEEEEEeccc-cchH---HHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCcC
Q psy15570 27 RVAIMVDDMV-DDVH---SFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 82 (84)
Q Consensus 27 k~vlivDDii-~TG~---Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i 82 (84)
+.+.++...- .++. .+..+++.+++. . .+.+.+..+.++.+..++|.++|++.+
T Consensus 109 ~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~-~-~i~~~~~~g~l~~e~l~~LkeaG~~~v 166 (336)
T PRK06256 109 GTFCIVASGRGPSGKEVDQVVEAVKAIKEE-T-DLEICACLGLLTEEQAERLKEAGVDRY 166 (336)
T ss_pred CEEEEEecCCCCCchHHHHHHHHHHHHHhc-C-CCcEEecCCcCCHHHHHHHHHhCCCEE
Confidence 4566654332 1222 566667777765 2 345556667888888999999998765
No 225
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=30.30 E-value=1.3e+02 Score=21.76 Aligned_cols=57 Identities=12% Similarity=0.208 Sum_probs=37.0
Q ss_pred CEEEEEecccc--chHHHHHHHHHHHHcCCC-eEEEEE---------EeccCCCCHHHHhhcCCCCcCC
Q psy15570 27 RVAIMVDDMVD--DVHSFVAAAEVLKDRGAY-KIYVLA---------THGLLSSDAPLLIEESPIDEVP 83 (84)
Q Consensus 27 k~vlivDDii~--TG~Tl~~~~~~L~~~ga~-~v~~~~---------~h~~~s~~a~~~l~~~~i~~i~ 83 (84)
+.+.|+++--. .-..+..+++.+++.+.. .+.+++ ..++...+.+++|.++|++.++
T Consensus 54 ~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~ 122 (309)
T TIGR00423 54 TEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMP 122 (309)
T ss_pred CEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCC
Confidence 67888754333 345678888999988753 233222 2333456788999999988775
No 226
>PRK05569 flavodoxin; Provisional
Probab=30.08 E-value=1.4e+02 Score=18.54 Aligned_cols=40 Identities=20% Similarity=0.072 Sum_probs=20.8
Q ss_pred CCCEEEEEeccccc-hHHHHHHHHHHHHcCCCeEEEEEEec
Q psy15570 25 GGRVAIMVDDMVDD-VHSFVAAAEVLKDRGAYKIYVLATHG 64 (84)
Q Consensus 25 ~gk~vlivDDii~T-G~Tl~~~~~~L~~~ga~~v~~~~~h~ 64 (84)
+||.+.++----.+ |..+....+.|++.|.+.+-.+.+++
T Consensus 82 ~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 122 (141)
T PRK05569 82 ENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGDLAVNE 122 (141)
T ss_pred CCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeeeEEEcc
Confidence 56666666432211 23344455666666766555544444
No 227
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=30.03 E-value=37 Score=20.61 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=15.4
Q ss_pred cCCCCEEEEEeccccchHH
Q psy15570 23 DVGGRVAIMVDDMVDDVHS 41 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG~T 41 (84)
...|+.++++||+-..-..
T Consensus 46 gY~~q~vvi~DD~~~~~~~ 64 (107)
T PF00910_consen 46 GYQGQPVVIIDDFGQDNDG 64 (107)
T ss_pred ccCCCcEEEEeecCccccc
Confidence 4679999999999877644
No 228
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=29.52 E-value=65 Score=20.34 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=27.6
Q ss_pred CEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 27 RVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 27 k~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
+.+++-+.-.+|..++..+.+.+++.|.+++.+++
T Consensus 68 ~~I~~e~~s~~T~ena~~~~~~~~~~~~~~i~lVT 102 (150)
T cd06259 68 EAILLEDRSTNTYENARFSAELLRERGIRSVLLVT 102 (150)
T ss_pred HHeeecCCCCCHHHHHHHHHHHHHhcCCCeEEEEC
Confidence 46777777788888999999999999887666554
No 229
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=29.23 E-value=47 Score=19.78 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=13.8
Q ss_pred cccchHHHHHHHHHHHHcCCCeEEEE
Q psy15570 35 MVDDVHSFVAAAEVLKDRGAYKIYVL 60 (84)
Q Consensus 35 ii~TG~Tl~~~~~~L~~~ga~~v~~~ 60 (84)
+++|++|- +.|+++|.....+.
T Consensus 16 i~AT~gTa----~~L~~~Gi~~~~v~ 37 (95)
T PF02142_consen 16 IYATEGTA----KFLKEHGIEVTEVV 37 (95)
T ss_dssp EEEEHHHH----HHHHHTT--EEECC
T ss_pred EEEChHHH----HHHHHcCCCceeee
Confidence 57788885 47888887744443
No 230
>PRK13583 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=29.21 E-value=27 Score=25.06 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=12.9
Q ss_pred EeccccchHHHHHHHHHHHHc
Q psy15570 32 VDDMVDDVHSFVAAAEVLKDR 52 (84)
Q Consensus 32 vDDii~TG~Tl~~~~~~L~~~ 52 (84)
|=|+++||+|+.+ +-|+..
T Consensus 175 IvDivsTG~TLr~--NgL~~i 193 (228)
T PRK13583 175 IVDITSTGETLRA--NHLKIL 193 (228)
T ss_pred hhhhhchhHHHHH--CCCEEe
Confidence 3489999999874 344444
No 231
>PRK13584 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=29.17 E-value=34 Score=24.18 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=10.5
Q ss_pred EeccccchHHHHH
Q psy15570 32 VDDMVDDVHSFVA 44 (84)
Q Consensus 32 vDDii~TG~Tl~~ 44 (84)
|=|+++||+|+.+
T Consensus 148 IvDiv~TG~TLr~ 160 (204)
T PRK13584 148 IVDIVQTGTTLKA 160 (204)
T ss_pred EEEEECccHHHHH
Confidence 4489999999764
No 232
>KOG1481|consensus
Probab=29.10 E-value=71 Score=24.44 Aligned_cols=29 Identities=10% Similarity=0.182 Sum_probs=23.9
Q ss_pred ccchHHHHHHHHHHHHcCCCeEEEEEEec
Q psy15570 36 VDDVHSFVAAAEVLKDRGAYKIYVLATHG 64 (84)
Q Consensus 36 i~TG~Tl~~~~~~L~~~ga~~v~~~~~h~ 64 (84)
.-||+|+.-..+.|++.....+.++..-|
T Consensus 221 ~GTGGTiaGVskyLkek~~~~v~~~laDP 249 (391)
T KOG1481|consen 221 TGTGGTIAGVSKYLKEKSDGRVAVFLADP 249 (391)
T ss_pred cCCCcchHHHHHHHhhcCCCceEEEEeCC
Confidence 46899999999999999888777776544
No 233
>PF01969 DUF111: Protein of unknown function DUF111; InterPro: IPR002822 The proteins in this family have no known function.; PDB: 3C19_A.
Probab=29.09 E-value=59 Score=25.01 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=24.9
Q ss_pred EeccccchHHHHHHHHHHHHcCCCeEEEEEE
Q psy15570 32 VDDMVDDVHSFVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 32 vDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~ 62 (84)
|||| ||..+-.+++.|.+.||..|++.-+
T Consensus 257 iDD~--s~E~lg~~~e~L~~~GAlDV~~~Pi 285 (382)
T PF01969_consen 257 IDDM--SPEELGYLIERLLEAGALDVFFTPI 285 (382)
T ss_dssp EETT--STTHHHHHHHHHTTSTEEEEEEEEE
T ss_pred ccCC--CHHHHHHHHHHHHHcCCceeEEccc
Confidence 6887 7999999999999999998876553
No 234
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=28.89 E-value=47 Score=24.53 Aligned_cols=37 Identities=19% Similarity=0.085 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcC
Q psy15570 39 VHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEES 77 (84)
Q Consensus 39 G~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~ 77 (84)
|-++...++.|.+.|.+.|.+++. -|..+..+.+.+.
T Consensus 245 ~P~~~~~l~~l~~~G~k~V~vvP~--gFv~D~lETl~ei 281 (322)
T TIGR00109 245 GPYTEELLEKLGEQGVQHIVVVPI--GFTADHLETLYEI 281 (322)
T ss_pred CCCHHHHHHHHHHcCCceEEEECC--cccccchhHHHhh
Confidence 455666677787788877776664 3455666666543
No 235
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=28.77 E-value=1.3e+02 Score=25.61 Aligned_cols=52 Identities=19% Similarity=0.182 Sum_probs=35.6
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCC
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPID 80 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~ 80 (84)
.|++++|+ .+|......+..|.+.|.+.+.++-..+-+.....+++.+.+++
T Consensus 316 ~gk~VvVi----G~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~~~l~~~L~~~GV~ 367 (985)
T TIGR01372 316 PGKRIVVA----TNNDSAYRAAADLLAAGIAVVAIIDARADVSPEARAEARELGIE 367 (985)
T ss_pred CCCeEEEE----CCCHHHHHHHHHHHHcCCceEEEEccCcchhHHHHHHHHHcCCE
Confidence 57888875 67888888899999999887766654333333445556666654
No 236
>PRK06620 hypothetical protein; Validated
Probab=28.75 E-value=99 Score=21.33 Aligned_cols=35 Identities=9% Similarity=0.297 Sum_probs=24.7
Q ss_pred CCEEEEEecccc-chHHHHHHHHHHHHcCCCeEEEE
Q psy15570 26 GRVAIMVDDMVD-DVHSFVAAAEVLKDRGAYKIYVL 60 (84)
Q Consensus 26 gk~vlivDDii~-TG~Tl~~~~~~L~~~ga~~v~~~ 60 (84)
...+++|||+=. ++..+..+.+.+++.|-.-+.+.
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits 120 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIINEKQKYLLLTS 120 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHHhcCCEEEEEc
Confidence 346899999832 45678888899999985433333
No 237
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=28.65 E-value=39 Score=20.87 Aligned_cols=34 Identities=21% Similarity=0.046 Sum_probs=29.8
Q ss_pred EEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 28 VAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 28 ~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
.+++.++=..+|++=..++..|+.+|.+-+.+-.
T Consensus 19 ~ilVaG~nfG~GSSRE~A~~al~~~Gi~avia~s 52 (91)
T cd01577 19 DIIVAGKNFGCGSSREHAPWALKDAGIRAVIAES 52 (91)
T ss_pred CEEEecCcccCCCcHHHHHHHHHHhCCCEEEEch
Confidence 5889999999999999999999999998665544
No 238
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=28.57 E-value=97 Score=23.42 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=29.2
Q ss_pred EeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCC-CHHHHhhcCCC
Q psy15570 32 VDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSS-DAPLLIEESPI 79 (84)
Q Consensus 32 vDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~-~a~~~l~~~~i 79 (84)
+|.+.+ .....+=+..|++.|+..+++.++.+-... .+.+.+.++||
T Consensus 46 ~DPLad-~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGI 93 (314)
T PF03198_consen 46 IDPLAD-PEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGI 93 (314)
T ss_dssp --GGG--HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-
T ss_pred cCcccC-HHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCC
Confidence 355554 457777789999999999999998775543 47777888775
No 239
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=28.43 E-value=2.2e+02 Score=20.84 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=30.1
Q ss_pred ccCCCC--EEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 22 GDVGGR--VAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 22 g~v~gk--~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
|.+.|+ .+++.||-.+.......+-+++.+.|+.-+....
T Consensus 45 Ggi~G~~velv~~D~~~dp~~a~~~A~~li~~~~V~~vvG~~ 86 (366)
T COG0683 45 GGILGRKVELVVEDDASDPATAAAVARKLITQDGVDAVVGPT 86 (366)
T ss_pred CCcCCceEEEEEecCCCChHHHHHHHHHHHhhcCceEEEEec
Confidence 445666 5777788888888888888888888887665554
No 240
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=28.35 E-value=1.4e+02 Score=17.77 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=21.5
Q ss_pred CEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 27 RVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 27 k~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
--++-+||.... ....+++.|+++|.+-.+.++
T Consensus 7 ~v~ltfDdg~~~--~~~~~~~~l~~~~i~at~fv~ 39 (123)
T PF01522_consen 7 SVALTFDDGYRD--NYDRLLPLLKKYGIPATFFVI 39 (123)
T ss_dssp EEEEEEESHCHT--HHHHHHHHHHHTT--EEEEE-
T ss_pred EEEEEEecCchh--hHHHHHHHHHhcccceeeeec
Confidence 356778998833 446788999999987555444
No 241
>PRK01686 hisG ATP phosphoribosyltransferase catalytic subunit; Reviewed
Probab=28.30 E-value=39 Score=23.93 Aligned_cols=13 Identities=23% Similarity=0.394 Sum_probs=10.5
Q ss_pred EeccccchHHHHH
Q psy15570 32 VDDMVDDVHSFVA 44 (84)
Q Consensus 32 vDDii~TG~Tl~~ 44 (84)
|=|+++||+|+.+
T Consensus 158 IvDivsTG~TLr~ 170 (215)
T PRK01686 158 IVDIVETGNTLRA 170 (215)
T ss_pred EEEeecChHHHHH
Confidence 3489999999874
No 242
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=28.29 E-value=1.1e+02 Score=20.10 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=30.0
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEec
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHG 64 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~ 64 (84)
+|+++.++=| ..+.+..+.+..+.+.|.. +..++..+
T Consensus 1 ~gl~i~~vGD--~~~rv~~Sl~~~~~~~g~~-~~~~~P~~ 37 (158)
T PF00185_consen 1 KGLKIAYVGD--GHNRVAHSLIELLAKFGME-VVLIAPEG 37 (158)
T ss_dssp TTEEEEEESS--TTSHHHHHHHHHHHHTTSE-EEEESSGG
T ss_pred CCCEEEEECC--CCChHHHHHHHHHHHcCCE-EEEECCCc
Confidence 4778888888 5689999999999999988 77666544
No 243
>COG2604 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.21 E-value=45 Score=27.34 Aligned_cols=42 Identities=21% Similarity=0.142 Sum_probs=29.3
Q ss_pred EEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCC
Q psy15570 28 VAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPI 79 (84)
Q Consensus 28 ~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i 79 (84)
.++| ++||-|+..-+..|++..-+.+..++ +.+..-|.+.||
T Consensus 226 ~aiI----VSaGPSL~Kql~lLK~y~~k~~IFca------dsal~~L~k~GI 267 (594)
T COG2604 226 PAII----VSAGPSLEKQLPLLKKYQDKATIFCA------DSALPILAKHGI 267 (594)
T ss_pred ceEE----EcCCcChhhccHHHHhcccceEEEEC------CCcchHHHhcCC
Confidence 5665 58999999999999999655333222 456666666665
No 244
>PHA00673 acetyltransferase domain containing protein
Probab=28.21 E-value=1.5e+02 Score=19.85 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=40.4
Q ss_pred CCCEEEEEeccccc--------hHHHHH-HHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCcC
Q psy15570 25 GGRVAIMVDDMVDD--------VHSFVA-AAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 82 (84)
Q Consensus 25 ~gk~vlivDDii~T--------G~Tl~~-~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i 82 (84)
.+..-..||++.-. |..|.. +.+..++.|+..+++-+ .-+.+..+.....|.+|-
T Consensus 81 ~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~---~p~~~tv~fy~~~g~~~~ 144 (154)
T PHA00673 81 KGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSG---PTEGRLVQLLPAAGYRET 144 (154)
T ss_pred CCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEec---CCCccchHHHHhCCchhh
Confidence 45555577888754 667665 66888999999888777 457888888877777654
No 245
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=28.11 E-value=1.2e+02 Score=18.84 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=20.9
Q ss_pred ccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 36 VDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 36 i~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
+-.|..-.++++.+++.|.+.+.+.+
T Consensus 8 anrGeia~r~~ra~r~~Gi~tv~v~s 33 (110)
T PF00289_consen 8 ANRGEIAVRIIRALRELGIETVAVNS 33 (110)
T ss_dssp SS-HHHHHHHHHHHHHTTSEEEEEEE
T ss_pred ECCCHHHHHHHHHHHHhCCcceeccC
Confidence 56888899999999999988766555
No 246
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=28.09 E-value=1.2e+02 Score=22.36 Aligned_cols=37 Identities=16% Similarity=0.021 Sum_probs=29.0
Q ss_pred eccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 21 VGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 21 ~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
.|.++|.++.++=| .+.++...+..+...|+. +..++
T Consensus 147 ~g~l~gl~i~~vGd---~~~v~~Sl~~~l~~~g~~-v~~~~ 183 (304)
T PRK00779 147 RGSLKGLKVAWVGD---GNNVANSLLLAAALLGFD-LRVAT 183 (304)
T ss_pred hCCcCCcEEEEEeC---CCccHHHHHHHHHHcCCE-EEEEC
Confidence 47789999999988 467888889999999964 44444
No 247
>PF01634 HisG: ATP phosphoribosyltransferase; InterPro: IPR013820 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. ATP phosphoribosyltransferase is found in two distinct forms: a long form containing two catalytic domains and a C-terminal regulatory domain, and a short form in which the regulatory domain is missing. The long form is catalytically competent, but in organisms with the short form, a histidyl-tRNA synthetase paralogue, HisZ, is required for enzyme activity []. This entry represents the catalytic region of this enzyme. The structures of the long form enzymes from Escherichia coli (P60757 from SWISSPROT) and Mycobacterium tuberculosis (P60759 from SWISSPROT) have been determined [, ]. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. The two catalytic domains are linked by a two-stranded beta-sheet and togther form a "periplasmic binding protein fold". A crevice between these domains contains the active site. The C-terminal domain is not directly involved in catalysis but appears to be involved the formation of hexamers, induced by the binding of inhibitors such as histidine to the enzyme, thus regulating activity.; GO: 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1VE4_A 2VD3_B 1NH7_A 1NH8_A 1Z7N_G 1Z7M_E 1O64_A 1O63_A 1USY_F 1Q1K_A ....
Probab=27.94 E-value=38 Score=22.96 Aligned_cols=12 Identities=25% Similarity=0.299 Sum_probs=9.9
Q ss_pred eccccchHHHHH
Q psy15570 33 DDMVDDVHSFVA 44 (84)
Q Consensus 33 DDii~TG~Tl~~ 44 (84)
=|++.||+|+.+
T Consensus 111 vDiv~TG~TLr~ 122 (163)
T PF01634_consen 111 VDIVETGTTLRA 122 (163)
T ss_dssp EEEESSSHHHHH
T ss_pred EEeccCcHHHHH
Confidence 489999999763
No 248
>COG1434 Uncharacterized conserved protein [Function unknown]
Probab=27.90 E-value=1.5e+02 Score=19.91 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=37.8
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCcCC
Q psy15570 24 VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEVP 83 (84)
Q Consensus 24 v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i~ 83 (84)
+....++..|--.+|-.....+.+.+++.+++++.+++ ++.=...+...++..+.+.+|
T Consensus 120 v~~~~i~~e~~s~~T~eNa~~s~~~l~~~~~~~~ilVT-s~~Hm~Ra~~~~~~~g~~~~p 178 (223)
T COG1434 120 VPAERIILEDRSRNTVENARFSRRLLRTQGPESVILVT-SPYHMPRALLLFRKLGISVIP 178 (223)
T ss_pred CCcccEEecCCCccHHHHHHHHHHHHHHcCCceEEEEC-CHHHHHHHHHHHHHCCCcccc
Confidence 44445555444488888888899999999888776555 332234455555555555443
No 249
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=27.83 E-value=2.7e+02 Score=21.10 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=34.7
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEec--cCCC--CHHHHhhcCCCC
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHG--LLSS--DAPLLIEESPID 80 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~--~~s~--~a~~~l~~~~i~ 80 (84)
.|++++|+. .|.+-..++..+.+.|++.|..+.-.+ .+.. ...+.+.+.|++
T Consensus 272 ~g~~VvViG----gG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~ 327 (457)
T PRK11749 272 VGKRVVVIG----GGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVE 327 (457)
T ss_pred CCCeEEEEC----CCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCE
Confidence 588999876 678888888999999998777765322 1211 223455566654
No 250
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=27.80 E-value=1.8e+02 Score=20.47 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=25.6
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeE
Q psy15570 24 VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKI 57 (84)
Q Consensus 24 v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v 57 (84)
++|+.+++++.--+.-..+..+.+.++..|++.+
T Consensus 121 f~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~ 154 (258)
T PF02153_consen 121 FEGRNWILCPGEDTDPEALELVEELWEALGARVV 154 (258)
T ss_dssp TTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEE
T ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEE
Confidence 5799999987766666788888899999998644
No 251
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=27.80 E-value=1.8e+02 Score=19.02 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=23.6
Q ss_pred CCCEEEEEecccc-chHHHHHHHHHHHHcCCCeEEEEEE
Q psy15570 25 GGRVAIMVDDMVD-DVHSFVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 25 ~gk~vlivDDii~-TG~Tl~~~~~~L~~~ga~~v~~~~~ 62 (84)
.+++++|||++=. +........+.+.+.....+.++++
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 4678999998533 3444556667776654444555544
No 252
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=27.38 E-value=50 Score=23.52 Aligned_cols=43 Identities=19% Similarity=0.082 Sum_probs=27.4
Q ss_pred chHHHHHHHHHHHHcCCCeEEEEEEeccC-CCCHHHHhhcCCCC
Q psy15570 38 DVHSFVAAAEVLKDRGAYKIYVLATHGLL-SSDAPLLIEESPID 80 (84)
Q Consensus 38 TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~-s~~a~~~l~~~~i~ 80 (84)
.-.|..++.+.|+..|++++.+++.+.-- +....+.+++.|++
T Consensus 104 ~tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~e 147 (239)
T TIGR02990 104 VVTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFE 147 (239)
T ss_pred eeCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcE
Confidence 33466777889999999999888843311 11244446667764
No 253
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=27.38 E-value=92 Score=23.90 Aligned_cols=62 Identities=13% Similarity=0.269 Sum_probs=40.1
Q ss_pred CCCC-cc-cCCCCCCeeeeccC--CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCC
Q psy15570 5 VGVP-QH-PAKEKPPISVVGDV--GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSD 69 (84)
Q Consensus 5 ~~~~-~~-~~~~~~~~~i~g~v--~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~ 69 (84)
+|+| |. .|.+...+.++.-+ ++| -+|+---++|=+.+..+++.+++.|... .+..|+.-+.+
T Consensus 122 ~~~~ayKIaS~E~~~~plik~iA~~~k-PiIlSTGma~~~ei~~av~~~r~~g~~~--i~LLhC~s~YP 187 (347)
T COG2089 122 LNPPAYKIASGEINDLPLIKYIAKKGK-PIILSTGMATIEEIEEAVAILRENGNPD--IALLHCTSAYP 187 (347)
T ss_pred cCCCeEEecCccccChHHHHHHHhcCC-CEEEEcccccHHHHHHHHHHHHhcCCCC--eEEEEecCCCC
Confidence 4555 33 55565555555543 366 5566777778888999999999999883 33344444444
No 254
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=27.31 E-value=1.3e+02 Score=22.46 Aligned_cols=38 Identities=11% Similarity=-0.108 Sum_probs=29.4
Q ss_pred eccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 21 VGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 21 ~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
.|.++|+++.++=|. .+ .+..+.+..+...|+. +..++
T Consensus 150 ~g~l~g~kia~vGD~-~~-~v~~Sl~~~~~~~g~~-v~~~~ 187 (332)
T PRK04284 150 KKPYKDIKFTYVGDG-RN-NVANALMQGAAIMGMD-FHLVC 187 (332)
T ss_pred cCCcCCcEEEEecCC-Cc-chHHHHHHHHHHcCCE-EEEEC
Confidence 477899999999997 33 6888888889999875 44444
No 255
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=27.29 E-value=1.3e+02 Score=23.02 Aligned_cols=51 Identities=10% Similarity=0.042 Sum_probs=35.7
Q ss_pred EEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEecc--CCCCHHHHhhcCCCC
Q psy15570 29 AIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGL--LSSDAPLLIEESPID 80 (84)
Q Consensus 29 vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~--~s~~a~~~l~~~~i~ 80 (84)
.+-+++..-.|.|. .|+.++.++|.++|.+.+..+- ..+.+.+.|.+.|++
T Consensus 98 yvTLEPC~h~Gktp-~C~~aii~agI~rVv~g~~dp~~~~~g~g~~~l~~~gi~ 150 (380)
T PLN02807 98 YVSLEPCNHYGRTP-PCTEALIKAKVKRVVVGMVDPNPIVASKGIERLRDAGIE 150 (380)
T ss_pred EEEcCCCcCCCCCh-HHHHHHHHhCCCEEEEEecCCCccccchHHHHHHhCCCE
Confidence 34467777778876 6778888889998887775432 234567778777764
No 256
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.26 E-value=2e+02 Score=21.16 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=39.0
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCC-eEEEEEEeccCCCCHHHHhhcCCCCcC
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAY-KIYVLATHGLLSSDAPLLIEESPIDEV 82 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~-~v~~~~~h~~~s~~a~~~l~~~~i~~i 82 (84)
.|-+++++|-+ +-.++.++++.+++.|.+ .+...++=++ ..+-++.+.+.|+|-|
T Consensus 201 agaDiI~LDn~--~~e~l~~~v~~l~~~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~I 256 (278)
T PRK08385 201 AGADIIMLDNM--TPEEIREVIEALKREGLRERVKIEVSGGI-TPENIEEYAKLDVDVI 256 (278)
T ss_pred cCcCEEEECCC--CHHHHHHHHHHHHhcCcCCCEEEEEECCC-CHHHHHHHHHcCCCEE
Confidence 36689999999 788999999999988733 4555554444 3455666667777654
No 257
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=27.16 E-value=2.1e+02 Score=21.25 Aligned_cols=41 Identities=17% Similarity=0.360 Sum_probs=27.2
Q ss_pred CCCCEEEEEecccc-chHHHHHHHHHHHHcCCCeEEEEEEec
Q psy15570 24 VGGRVAIMVDDMVD-DVHSFVAAAEVLKDRGAYKIYVLATHG 64 (84)
Q Consensus 24 v~gk~vlivDDii~-TG~Tl~~~~~~L~~~ga~~v~~~~~h~ 64 (84)
..+++|+|+|+.-. +-.......+.|++......+++++|-
T Consensus 111 ~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~ 152 (325)
T PRK08699 111 RGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHA 152 (325)
T ss_pred cCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 35678888887654 334555667777776545567778876
No 258
>PRK06756 flavodoxin; Provisional
Probab=27.15 E-value=1.7e+02 Score=18.48 Aligned_cols=42 Identities=21% Similarity=0.163 Sum_probs=27.2
Q ss_pred cCCCCEEEEEecccc----chHHHHHHHHHHHHcCCCeEE-EEEEec
Q psy15570 23 DVGGRVAIMVDDMVD----DVHSFVAAAEVLKDRGAYKIY-VLATHG 64 (84)
Q Consensus 23 ~v~gk~vlivDDii~----TG~Tl~~~~~~L~~~ga~~v~-~~~~h~ 64 (84)
+++||.+.++-=--. .|..+....+.|++.|++.+. .+.++.
T Consensus 80 ~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~ 126 (148)
T PRK06756 80 DLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVEL 126 (148)
T ss_pred CCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEec
Confidence 457888888643221 357778888888888887654 334444
No 259
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=26.98 E-value=78 Score=22.28 Aligned_cols=39 Identities=23% Similarity=0.171 Sum_probs=28.8
Q ss_pred CCEEEEE----ecc-ccchHHHHHHHHHHHHcCCCeEEEEEEeccCCC
Q psy15570 26 GRVAIMV----DDM-VDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSS 68 (84)
Q Consensus 26 gk~vliv----DDi-i~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~ 68 (84)
..++++| ||. +.-|+|+. .+.+.|.....+++|+|=...
T Consensus 10 ~~~vL~v~aHPDDe~~g~ggtla----~~~~~G~~V~v~~lT~Ge~g~ 53 (237)
T COG2120 10 PLRVLVVFAHPDDEEIGCGGTLA----KLAARGVEVTVVCLTLGEAGE 53 (237)
T ss_pred CCcEEEEecCCcchhhccHHHHH----HHHHCCCeEEEEEccCCcccc
Confidence 4455555 776 88999987 458889998888888875443
No 260
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=26.81 E-value=2.7e+02 Score=21.07 Aligned_cols=43 Identities=19% Similarity=0.394 Sum_probs=29.4
Q ss_pred CeeeeccCCCCEEEEEeccccchHHHHHHHHHHHHcC-CCeEEEEE
Q psy15570 17 PISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRG-AYKIYVLA 61 (84)
Q Consensus 17 ~~~i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~g-a~~v~~~~ 61 (84)
.+++.+...| +.++||-.-...++.++.+.|++.. .+++.+++
T Consensus 308 R~e~~~~~~g--v~~i~D~ahn~~~~~a~~~al~~~~~~~~ii~i~ 351 (448)
T TIGR01082 308 RFEILGEFGG--VLLIDDYAHHPTEIKATLKAARQGYPDKRIVVVF 351 (448)
T ss_pred cceEEEEeCC--eEEEEcCCCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 4666554333 6788996668999999999999863 33444443
No 261
>PF01924 HypD: Hydrogenase formation hypA family; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes []. This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas [].; GO: 0046872 metal ion binding; PDB: 2Z1D_A.
Probab=26.75 E-value=81 Score=24.25 Aligned_cols=52 Identities=21% Similarity=0.256 Sum_probs=35.0
Q ss_pred CCEEEEEe-ccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCC
Q psy15570 26 GRVAIMVD-DMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESP 78 (84)
Q Consensus 26 gk~vlivD-Dii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~ 78 (84)
+|.|+.+= --=||.-+...++..-++.|.+...+++.|-+ .+++++.|.+++
T Consensus 125 ~k~vVF~avGFETTaP~~A~~i~~a~~~~~~Nfsvl~~hk~-~ppal~~ll~~~ 177 (355)
T PF01924_consen 125 DKEVVFFAVGFETTAPATAAAILQAKEEGIKNFSVLSSHKL-TPPALEALLEDP 177 (355)
T ss_dssp TSEEEEEEEE-HHHHHHHHHHHHHHHHHT-SSEEEEEEEE--CHHHHHHHHHTT
T ss_pred CCceEEEEeCcccCcHHHHHHHHHHHHcCCCCEEEEEeccc-cHHHHHHHHcCC
Confidence 45544432 22255666666777777889999999999985 488898887765
No 262
>PLN02384 ribose-5-phosphate isomerase
Probab=26.52 E-value=93 Score=22.89 Aligned_cols=42 Identities=12% Similarity=-0.063 Sum_probs=25.0
Q ss_pred cccchHHHHHHHHHHHHcCCC----eEEEEEEeccCCCCHHHHhhcCCCC
Q psy15570 35 MVDDVHSFVAAAEVLKDRGAY----KIYVLATHGLLSSDAPLLIEESPID 80 (84)
Q Consensus 35 ii~TG~Tl~~~~~~L~~~ga~----~v~~~~~h~~~s~~a~~~l~~~~i~ 80 (84)
-+-||+|...+++.|.++... .+.++.| |....+...+.|+.
T Consensus 54 GLGTGSTv~~~I~~La~r~~~~~l~~I~~VpT----S~~T~~~a~~~GIp 99 (264)
T PLN02384 54 GLGTGSTAKHAVDRIGELLRQGKLKNIIGIPT----SKKTHEQAVSLGIP 99 (264)
T ss_pred EecchHHHHHHHHHHHHhhhhccccceEEEcC----cHHHHHHHHHcCCc
Confidence 357999999888877766432 2444432 34445555555543
No 263
>PLN02398 hydroxyacylglutathione hydrolase
Probab=26.51 E-value=1.7e+02 Score=21.94 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=26.1
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCC
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLS 67 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s 67 (84)
+++.+++||. | ......+.+++.|..-..++.||.-..
T Consensus 96 ~t~~~~vVDP----~-~a~~vl~~l~~~g~~L~~ILlTH~H~D 133 (329)
T PLN02398 96 DTGTVGVVDP----S-EAVPVIDALSRKNRNLTYILNTHHHYD 133 (329)
T ss_pred CCCEEEEEcC----C-CHHHHHHHHHhcCCCceEEEECCCCch
Confidence 3456666664 3 235566778888887778999997554
No 264
>PRK09087 hypothetical protein; Validated
Probab=26.46 E-value=2.2e+02 Score=19.80 Aligned_cols=49 Identities=8% Similarity=0.118 Sum_probs=29.5
Q ss_pred EEEEEecc--c-cchHHHHHHHHHHHHcCCCeEEEEEEe----ccCCCCHHHHhhc
Q psy15570 28 VAIMVDDM--V-DDVHSFVAAAEVLKDRGAYKIYVLATH----GLLSSDAPLLIEE 76 (84)
Q Consensus 28 ~vlivDDi--i-~TG~Tl~~~~~~L~~~ga~~v~~~~~h----~~~s~~a~~~l~~ 76 (84)
.++++||+ + .+-..+....+.+.+.|...+....+. +...++...|+..
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~ 144 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKA 144 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhC
Confidence 57899998 3 245668888888898885533333321 1233455555543
No 265
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=26.44 E-value=1.6e+02 Score=18.02 Aligned_cols=31 Identities=13% Similarity=0.024 Sum_probs=24.1
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEE
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIY 58 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~ 58 (84)
+++.++++. ++|.....++..|.+.|...+.
T Consensus 59 ~~~~IVlyC---~~G~rS~~aa~~L~~~G~~~v~ 89 (104)
T PRK10287 59 KNDTVKLYC---NAGRQSGQAKEILSEMGYTHAE 89 (104)
T ss_pred CCCeEEEEe---CCChHHHHHHHHHHHcCCCeEE
Confidence 356677774 4788888889999999988764
No 266
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=26.34 E-value=1e+02 Score=22.14 Aligned_cols=41 Identities=15% Similarity=0.060 Sum_probs=24.2
Q ss_pred ccchHHHHHHHHHHHHcCCC---eEEEEEEeccCCCCHHHHhhcCCCC
Q psy15570 36 VDDVHSFVAAAEVLKDRGAY---KIYVLATHGLLSSDAPLLIEESPID 80 (84)
Q Consensus 36 i~TG~Tl~~~~~~L~~~ga~---~v~~~~~h~~~s~~a~~~l~~~~i~ 80 (84)
+-||+|...+++.|.++... .+.++.| |........+.|+.
T Consensus 27 LGTGSTv~~~i~~L~~~~~~~~l~i~~Vpt----S~~t~~~a~~~Gip 70 (228)
T PRK13978 27 IGTGSTMELLLPQMAQLIKERGYNITGVCT----SNKIAFLAKELGIK 70 (228)
T ss_pred eCchHHHHHHHHHHHHHhhccCccEEEEeC----cHHHHHHHHHcCCc
Confidence 57999999888888766432 2444332 33445555454543
No 267
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=26.23 E-value=1.7e+02 Score=20.03 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=23.3
Q ss_pred CEEEEEeccccchHHHHHHHHHHHHcC
Q psy15570 27 RVAIMVDDMVDDVHSFVAAAEVLKDRG 53 (84)
Q Consensus 27 k~vlivDDii~TG~Tl~~~~~~L~~~g 53 (84)
..++++=|+++-|.--.++++.+++.+
T Consensus 46 D~li~lGDlvDrGp~s~~vl~~l~~~~ 72 (218)
T PRK11439 46 DLLISVGDLIDRGPQSLRCLQLLEEHW 72 (218)
T ss_pred CEEEEcCcccCCCcCHHHHHHHHHcCC
Confidence 368899999999999999999998754
No 268
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=25.97 E-value=2.5e+02 Score=20.10 Aligned_cols=60 Identities=12% Similarity=0.101 Sum_probs=38.2
Q ss_pred CCCCcc-cCCCCC-------CeeeeccCCCCEEEEEecc--ccchHHH---HHHHHHHHHcCCCeEEEEEEec
Q psy15570 5 VGVPQH-PAKEKP-------PISVVGDVGGRVAIMVDDM--VDDVHSF---VAAAEVLKDRGAYKIYVLATHG 64 (84)
Q Consensus 5 ~~~~~~-~~~~~~-------~~~i~g~v~gk~vlivDDi--i~TG~Tl---~~~~~~L~~~ga~~v~~~~~h~ 64 (84)
..+||. +++... .--+.|.+.|+.|+.+--- .-.|.++ ..-+..|+..|++.+.+....+
T Consensus 21 ~~ipY~~ip~fp~~tv~gH~g~l~~G~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~tna~G 93 (237)
T TIGR01698 21 VELPYAEIPGFPAPTVSGHAGELIRVRIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLILTNAAG 93 (237)
T ss_pred eEeecccCCCCCCCcccCccceEEEEEECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEEEEcccc
Confidence 456666 444332 2345688899998887621 1134444 4567899999999887766544
No 269
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=25.96 E-value=54 Score=22.16 Aligned_cols=44 Identities=16% Similarity=0.029 Sum_probs=35.1
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccC
Q psy15570 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLL 66 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~ 66 (84)
.+++.++|+..+=.-+|+|=..|+..++.+|.+-|.+-+.-.+|
T Consensus 45 ~~~~g~IiVaG~NfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If 88 (163)
T PRK00439 45 KVKPGDIIVAGKNFGCGSSREHAPIALKAAGVSAVIAKSFARIF 88 (163)
T ss_pred hcCCceEEEeCCcccCCccHHHHHHHHHHHCCCeEEEehHHHHH
Confidence 35566899999999999999999999999999877654433333
No 270
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=25.80 E-value=1.4e+02 Score=23.03 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=37.4
Q ss_pred CCEEEEEe-ccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCC
Q psy15570 26 GRVAIMVD-DMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESP 78 (84)
Q Consensus 26 gk~vlivD-Dii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~ 78 (84)
+|.|+.+= -.=||.-+...++...++.|.+..++++.|-+ .+++++.|.+++
T Consensus 136 dk~VVF~avGFETTaP~~A~~i~~a~~~~~~Nfsvl~~hkl-~PPa~~~ll~~~ 188 (369)
T TIGR00075 136 DRKVVFFAIGFETTAPTTASTLLSAKAEDINNFFFLSAHRL-VPPAVEALLENP 188 (369)
T ss_pred CCeEEEEecCchhccHHHHHHHHHHHHcCCCcEEEEEeccc-cHHHHHHHHcCC
Confidence 45554442 22356666677777778889999999999985 588888887765
No 271
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=25.78 E-value=1.7e+02 Score=18.09 Aligned_cols=26 Identities=19% Similarity=0.034 Sum_probs=17.1
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHc
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDR 52 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ 52 (84)
+++.+++... .+|..-..++..|++.
T Consensus 67 ~~~~vv~yC~--~sg~rs~~aa~~L~~~ 92 (121)
T cd01530 67 KRRVLIFHCE--FSSKRGPRMARHLRNL 92 (121)
T ss_pred CCCEEEEECC--CccccHHHHHHHHHHH
Confidence 4667777754 3666666677777774
No 272
>COG3680 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.78 E-value=73 Score=23.23 Aligned_cols=71 Identities=24% Similarity=0.300 Sum_probs=43.1
Q ss_pred CCCCCeeeeccCCCCEEEEEe----ccccchHHH---HHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCcCC
Q psy15570 13 KEKPPISVVGDVGGRVAIMVD----DMVDDVHSF---VAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEVP 83 (84)
Q Consensus 13 ~~~~~~~i~g~v~gk~vlivD----Dii~TG~Tl---~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i~ 83 (84)
-+.+...++|.-+|.+|+==. ---++|.-+ ..+++.++++|-..+..+-.|++......-+++..-++..|
T Consensus 24 pr~~~ifYVGKG~GnRVf~H~~~~sa~~d~~~~~srKlk~i~e~r~agl~iih~i~~hgl~dEktay~~eaa~id~~p 101 (259)
T COG3680 24 PRKDKIFYVGKGCGNRVFEHEWVASASQDSGEIISRKLKAISECRKAGLYIIHLIEVHGLADEKTAYKLEAAIIDHGP 101 (259)
T ss_pred CCCCcEEEEecCCccchHHhhhhhhcccccchHHHHHHHHHHHHHHcCCeeeeeehhhcCcchhHHHHHHHHHhhcCC
Confidence 344455566655555543211 001233333 34677888899888999999999887655577776665554
No 273
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=25.65 E-value=2e+02 Score=21.15 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=37.4
Q ss_pred CCEEEEEecccc--chHHHHHHHHHHHHcCCC-eEEEE---------EEeccCCCCHHHHhhcCCCCcCC
Q psy15570 26 GRVAIMVDDMVD--DVHSFVAAAEVLKDRGAY-KIYVL---------ATHGLLSSDAPLLIEESPIDEVP 83 (84)
Q Consensus 26 gk~vlivDDii~--TG~Tl~~~~~~L~~~ga~-~v~~~---------~~h~~~s~~a~~~l~~~~i~~i~ 83 (84)
-+.+.++++--. .-.-+..+++.+++.++. .+.+. ++.+..+.+.+++|.++|++.++
T Consensus 87 ~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~ 156 (343)
T TIGR03551 87 ATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMP 156 (343)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCccccc
Confidence 356777754222 344567888899988653 23322 13456667888999999998765
No 274
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=25.38 E-value=2.3e+02 Score=19.44 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=25.7
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
+++||+|++| -.|..-...++.|.+.|+. |.+++
T Consensus 6 ~l~gk~vlVv----GgG~va~rk~~~Ll~~ga~-VtVvs 39 (205)
T TIGR01470 6 NLEGRAVLVV----GGGDVALRKARLLLKAGAQ-LRVIA 39 (205)
T ss_pred EcCCCeEEEE----CcCHHHHHHHHHHHHCCCE-EEEEc
Confidence 5788999874 5677777778999999975 55555
No 275
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=25.27 E-value=1e+02 Score=19.60 Aligned_cols=25 Identities=20% Similarity=0.108 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEEec
Q psy15570 40 HSFVAAAEVLKDRGAYKIYVLATHG 64 (84)
Q Consensus 40 ~Tl~~~~~~L~~~ga~~v~~~~~h~ 64 (84)
-|+..+++.|.+.|.+.|.+..+|=
T Consensus 56 p~~~eaL~~l~~~G~~~V~V~Pl~l 80 (127)
T cd03412 56 DTPEEALAKLAADGYTEVIVQSLHI 80 (127)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCee
Confidence 4678899999999999998888754
No 276
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=25.22 E-value=1.6e+02 Score=17.65 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=25.2
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEE
Q psy15570 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~ 62 (84)
+++|++|+++ -.|..-..-++.|.+.|+ .+.+++.
T Consensus 4 ~l~~~~vlVv----GgG~va~~k~~~Ll~~gA-~v~vis~ 38 (103)
T PF13241_consen 4 DLKGKRVLVV----GGGPVAARKARLLLEAGA-KVTVISP 38 (103)
T ss_dssp --TT-EEEEE----EESHHHHHHHHHHCCCTB-EEEEEES
T ss_pred EcCCCEEEEE----CCCHHHHHHHHHHHhCCC-EEEEECC
Confidence 5789999985 468888888999999996 4666663
No 277
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=25.10 E-value=2e+02 Score=18.59 Aligned_cols=60 Identities=20% Similarity=0.160 Sum_probs=38.1
Q ss_pred CeeeeccCCCCEEEEEeccccchHHHHH-----HHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCc
Q psy15570 17 PISVVGDVGGRVAIMVDDMVDDVHSFVA-----AAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDE 81 (84)
Q Consensus 17 ~~~i~g~v~gk~vlivDDii~TG~Tl~~-----~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~ 81 (84)
.|.+. ++++-.+..++=+-..+.+... +++.|+++|+..+.+- =..+++++.|++.||+-
T Consensus 25 ~F~Iv-d~e~g~i~~vev~~np~~~~~~g~G~~~a~~l~~~gvdvvi~~----~iG~~a~~~l~~~GIkv 89 (121)
T COG1433 25 YFTIV-DVEDGEIKNVEVIENPAASAEKGAGIRIAELLVDEGVDVVIAS----NIGPNAYNALKAAGIKV 89 (121)
T ss_pred eEEEE-EecCCcEEEEEEeecccccccCcchHHHHHHHHHcCCCEEEEC----ccCHHHHHHHHHcCcEE
Confidence 34444 4455556666666655333332 4789999998854432 24578999999988764
No 278
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=25.06 E-value=1.6e+02 Score=22.08 Aligned_cols=54 Identities=13% Similarity=-0.088 Sum_probs=35.5
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEE-EEEEeccCCCCHHHHhhc
Q psy15570 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIY-VLATHGLLSSDAPLLIEE 76 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~-~~~~h~~~s~~a~~~l~~ 76 (84)
+++||.+.++-----+|..+....+.|++.|++.+. .+.+....+.+..+++.+
T Consensus 330 ~~~~K~~a~FGsygw~g~a~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~ 384 (394)
T PRK11921 330 GFKNKKAAAFGSYGWSGESVKIITERLKKAGFEIVNDGIRELWNPDDEALDRCRS 384 (394)
T ss_pred CcCCCEEEEEecCCCccHHHHHHHHHHHHCCCEEccCcEEEEeCCCHHHHHHHHH
Confidence 367888888887655678888888889989988763 344433333344444443
No 279
>PF13329 ATG2_CAD: Autophagy-related protein 2 CAD motif
Probab=25.00 E-value=1.2e+02 Score=20.13 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=29.3
Q ss_pred CCCeeeeccCCCCEEEEEeccccch---------------HHHHHHHHHHHHcCCCeEE
Q psy15570 15 KPPISVVGDVGGRVAIMVDDMVDDV---------------HSFVAAAEVLKDRGAYKIY 58 (84)
Q Consensus 15 ~~~~~i~g~v~gk~vlivDDii~TG---------------~Tl~~~~~~L~~~ga~~v~ 58 (84)
...+.+...++.-.++|+||+-.-+ .........+.+.|...|.
T Consensus 35 ~~~~~~~~~~~~~sllLIDDv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gyv~i~ 93 (157)
T PF13329_consen 35 SPQFSIKLSLRKASLLLIDDVSNLGSSSSSSRRRSSDKQSPQVQSLLDYLLKRGYVSIG 93 (157)
T ss_pred CCCEEEEEEeeccEEEEEcccccccccccccccccccccCCccchhhhhhhhCCcEEEE
Confidence 3456667777888999999998722 2233344557788876654
No 280
>cd01576 AcnB_Swivel Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.
Probab=25.00 E-value=54 Score=21.64 Aligned_cols=47 Identities=17% Similarity=0.084 Sum_probs=33.8
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHH------------HcCCCeEEEEEEeccCCCCHH
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLK------------DRGAYKIYVLATHGLLSSDAP 71 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~------------~~ga~~v~~~~~h~~~s~~a~ 71 (84)
+|..+++..+-.-+|+|=..+...|+ ++|...|.+-..+.+|..++.
T Consensus 49 ~g~~ilvaG~nFG~GSSRe~A~~aL~w~~g~~~~~~~~~~g~~aVia~sfa~IF~rNa~ 107 (131)
T cd01576 49 KGHPVAYVGDVVGTGSSRKSATNSVLWHTGKDIPFVPNKRAGGVVLGGKIAPIFFNTAE 107 (131)
T ss_pred CCCeEEEECCceeeccchHHHHHHHHHHhccccccccccceEEEEEeCchhHHHHhhHH
Confidence 36679999999999999999999998 445444444445556555544
No 281
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=24.99 E-value=1.8e+02 Score=18.10 Aligned_cols=13 Identities=8% Similarity=0.169 Sum_probs=7.0
Q ss_pred HHHHhhcCCCCcC
Q psy15570 70 APLLIEESPIDEV 82 (84)
Q Consensus 70 a~~~l~~~~i~~i 82 (84)
..+.+++.|+.++
T Consensus 103 v~d~~~~~G~~~v 115 (121)
T TIGR02804 103 ITDMLKAKEHENV 115 (121)
T ss_pred HHHHHHHcCCCeE
Confidence 4455555666543
No 282
>PRK01415 hypothetical protein; Validated
Probab=24.92 E-value=1.9e+02 Score=20.82 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=27.0
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEE
Q psy15570 24 VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVL 60 (84)
Q Consensus 24 v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~ 60 (84)
.+++.+++. .++|..-..++..|++.|.+.|+.+
T Consensus 169 ~k~k~Iv~y---CtgGiRs~kAa~~L~~~Gf~~Vy~L 202 (247)
T PRK01415 169 LKGKKIAMV---CTGGIRCEKSTSLLKSIGYDEVYHL 202 (247)
T ss_pred cCCCeEEEE---CCCChHHHHHHHHHHHcCCCcEEEe
Confidence 367888875 4888888889999999999877643
No 283
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=24.85 E-value=30 Score=24.79 Aligned_cols=39 Identities=26% Similarity=0.198 Sum_probs=27.6
Q ss_pred CCCCeeeeccCCCCEEEEEeccccchHHHHHHHHHHH-HcCCC
Q psy15570 14 EKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLK-DRGAY 55 (84)
Q Consensus 14 ~~~~~~i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~-~~ga~ 55 (84)
...-|...+.+.||.+ |=++|||.|....-+... +.|..
T Consensus 102 ~~GHF~a~~~VNGk~v---~fLVDTGATsVal~~~dA~RlGid 141 (215)
T COG3577 102 RDGHFEANGRVNGKKV---DFLVDTGATSVALNEEDARRLGID 141 (215)
T ss_pred CCCcEEEEEEECCEEE---EEEEecCcceeecCHHHHHHhCCC
Confidence 3445778888999986 778899999887655443 34543
No 284
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=24.72 E-value=1.7e+02 Score=17.91 Aligned_cols=38 Identities=21% Similarity=0.045 Sum_probs=19.7
Q ss_pred cccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhc
Q psy15570 35 MVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEE 76 (84)
Q Consensus 35 ii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~ 76 (84)
+++|++|-. .|++.|.....+.-.+.--.++..+.|.+
T Consensus 28 i~AT~gTa~----~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~ 65 (112)
T cd00532 28 LFATGGTSR----VLADAGIPVRAVSKRHEDGEPTVDAAIAE 65 (112)
T ss_pred EEECcHHHH----HHHHcCCceEEEEecCCCCCcHHHHHHhC
Confidence 356777744 56777766433333211012446666665
No 285
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=24.65 E-value=1.9e+02 Score=20.99 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=37.6
Q ss_pred CCCCcccCCCCCCeeeeccCCCCEEEEE--e---ccccchHHHH--HHHHHHHHcCCCeEEEEEEeccCCC
Q psy15570 5 VGVPQHPAKEKPPISVVGDVGGRVAIMV--D---DMVDDVHSFV--AAAEVLKDRGAYKIYVLATHGLLSS 68 (84)
Q Consensus 5 ~~~~~~~~~~~~~~~i~g~v~gk~vliv--D---Dii~TG~Tl~--~~~~~L~~~ga~~v~~~~~h~~~s~ 68 (84)
..+||... ..--+.|.+.|+.|+.+ . -.+ .|.++. .-+..|++.|++.+....+.+-+.+
T Consensus 32 ~~tpyg~p---~~~l~~g~l~g~~v~~l~RhGr~H~y-~~~~i~~~a~i~aLk~LGvk~iI~tnavGsl~~ 98 (267)
T PRK08564 32 VYTPYGEP---SDNIIIGEIEGVEVAFLPRHGRGHRI-PPHKINYRANIWALKELGVEWVIAVSAVGSLRE 98 (267)
T ss_pred EEcCCCCC---ccCEEEEEECCEEEEEEeCCCCCccc-CCccCcchHHHHHHHHCCCcEEEEeccccccCC
Confidence 35666631 12234577889999888 2 222 355543 3468999999999887766554433
No 286
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=24.54 E-value=69 Score=18.64 Aligned_cols=30 Identities=20% Similarity=0.103 Sum_probs=20.9
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeE
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKI 57 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v 57 (84)
+++.++++ ..+|..-..+++.|+++|...+
T Consensus 60 ~~~~ivv~---C~~G~rS~~aa~~L~~~G~~~~ 89 (110)
T COG0607 60 DDDPIVVY---CASGVRSAAAAAALKLAGFTNV 89 (110)
T ss_pred CCCeEEEE---eCCCCChHHHHHHHHHcCCccc
Confidence 45666663 5677777778888888886655
No 287
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=24.51 E-value=1.4e+02 Score=20.55 Aligned_cols=37 Identities=30% Similarity=0.192 Sum_probs=24.7
Q ss_pred cccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHh
Q psy15570 35 MVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLI 74 (84)
Q Consensus 35 ii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l 74 (84)
..|-|.|+...++.+.+.|+. .+++|+....+.++..
T Consensus 58 ~~DIg~tv~~~~~~~~~~gad---~~Tvh~~~G~~~l~~~ 94 (216)
T cd04725 58 LGDIPNTVAAAAEALLGLGAD---AVTVHPYGGSDMLKAA 94 (216)
T ss_pred cCchHHHHHHHHHHHHhcCCC---EEEECCcCCHHHHHHH
Confidence 367889999888888877655 5666775444444433
No 288
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=24.48 E-value=1.8e+02 Score=17.83 Aligned_cols=41 Identities=24% Similarity=0.157 Sum_probs=25.4
Q ss_pred CCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccC
Q psy15570 26 GRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLL 66 (84)
Q Consensus 26 gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~ 66 (84)
+...+|||--.................+.+.-.++.||.-.
T Consensus 14 ~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~ 54 (194)
T PF00753_consen 14 GDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHP 54 (194)
T ss_dssp TTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSH
T ss_pred CCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccc
Confidence 56777888766666555544334444455555778899843
No 289
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=24.47 E-value=1.1e+02 Score=22.01 Aligned_cols=40 Identities=23% Similarity=0.057 Sum_probs=25.5
Q ss_pred ccchHHHHHHHHHHHHcCC--CeEEEEEEeccCCCCHHHHhhcCCC
Q psy15570 36 VDDVHSFVAAAEVLKDRGA--YKIYVLATHGLLSSDAPLLIEESPI 79 (84)
Q Consensus 36 i~TG~Tl~~~~~~L~~~ga--~~v~~~~~h~~~s~~a~~~l~~~~i 79 (84)
+-||+|....++.|-+.-. ..+.+++| |......+.+.|+
T Consensus 26 lGTGST~~~fI~~Lg~~~~~e~~i~~V~T----S~~t~~l~~~~GI 67 (227)
T COG0120 26 LGTGSTAAYFIEALGRRVKGELDIGGVPT----SFQTEELARELGI 67 (227)
T ss_pred EcCcHHHHHHHHHHHHhhccCccEEEEeC----CHHHHHHHHHcCC
Confidence 5799999999999963111 23444443 4455666666655
No 290
>PRK10997 yieM hypothetical protein; Provisional
Probab=24.42 E-value=2.5e+02 Score=22.47 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=34.6
Q ss_pred CCCEEEEEeccccch--HHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHh
Q psy15570 25 GGRVAIMVDDMVDDV--HSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLI 74 (84)
Q Consensus 25 ~gk~vlivDDii~TG--~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l 74 (84)
++-.+++|-|.++.+ ..+.+.++.|++.+..++++++.-. ...+.+.++
T Consensus 416 r~adIVVISDF~~~~~~eel~~~L~~Lk~~~~~rf~~l~i~~-~~~p~l~~i 466 (487)
T PRK10997 416 FDADAVVISDFIAQRLPDELVAKVKELQRQHQHRFHAVAMSA-HGKPGIMRI 466 (487)
T ss_pred CCceEEEECCCCCCCChHHHHHHHHHHHHhcCcEEEEEEeCC-CCCchHHHh
Confidence 345799999998865 5678888999997778888887522 223445444
No 291
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=24.32 E-value=1.8e+02 Score=21.46 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=26.7
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEE
Q psy15570 24 VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYV 59 (84)
Q Consensus 24 v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~ 59 (84)
.+++.+++.. ++|..-..++..|++.|.+.|+.
T Consensus 169 ~kdk~IvvyC---~~G~Rs~~aa~~L~~~Gf~~V~~ 201 (314)
T PRK00142 169 LKDKKVVMYC---TGGIRCEKASAWMKHEGFKEVYQ 201 (314)
T ss_pred CCcCeEEEEC---CCCcHHHHHHHHHHHcCCCcEEE
Confidence 4678888876 68888888899999999987664
No 292
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=24.31 E-value=2e+02 Score=18.55 Aligned_cols=32 Identities=16% Similarity=0.017 Sum_probs=21.6
Q ss_pred CCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEE
Q psy15570 26 GRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVL 60 (84)
Q Consensus 26 gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~ 60 (84)
++.++++-+- |..-..++..|++.|.+.++.+
T Consensus 49 ~~~vVv~c~~---g~~a~~aa~~L~~~G~~~v~~L 80 (145)
T cd01535 49 AERYVLTCGS---SLLARFAAADLAALTVKPVFVL 80 (145)
T ss_pred CCCEEEEeCC---ChHHHHHHHHHHHcCCcCeEEe
Confidence 4456665543 6666677788999998776644
No 293
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=24.18 E-value=1.6e+02 Score=21.57 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=28.7
Q ss_pred eccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 21 VGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 21 ~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
.|.++|.++.++=|. +.++.+.+..+...|+. +..++
T Consensus 143 ~g~l~g~~v~~vGd~---~~v~~Sl~~~l~~~g~~-v~~~~ 179 (304)
T TIGR00658 143 FGKLKGVKVVYVGDG---NNVCNSLMLAGAKLGMD-VVVAT 179 (304)
T ss_pred hCCCCCcEEEEEeCC---CchHHHHHHHHHHcCCE-EEEEC
Confidence 467889999999887 46888888999999963 44444
No 294
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=24.09 E-value=73 Score=19.55 Aligned_cols=36 Identities=19% Similarity=0.084 Sum_probs=30.3
Q ss_pred CCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 26 GRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 26 gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
+..+++.+.-.-+|++=..++..++.+|.+-|.+-.
T Consensus 15 ~~~iiVaG~nfG~GSSRE~A~~al~~~Gi~aVia~s 50 (88)
T cd00404 15 GPGVVIGDENYGTGSSREHAALELRLLGGRAVIAKS 50 (88)
T ss_pred CCEEEEecCCeecCCCHHHHHHHHHHhCCCEEEEeC
Confidence 357888899999999999999999999998655444
No 295
>PRK11524 putative methyltransferase; Provisional
Probab=24.03 E-value=69 Score=22.98 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=17.4
Q ss_pred CEEEEEeccccchHHHHHHHHH
Q psy15570 27 RVAIMVDDMVDDVHSFVAAAEV 48 (84)
Q Consensus 27 k~vlivDDii~TG~Tl~~~~~~ 48 (84)
..=+++|.-.-||+|..+|.+.
T Consensus 208 ~GD~VLDPF~GSGTT~~AA~~l 229 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAVAKAS 229 (284)
T ss_pred CCCEEEECCCCCcHHHHHHHHc
Confidence 3445889999999999987554
No 296
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=23.95 E-value=2.2e+02 Score=21.99 Aligned_cols=41 Identities=17% Similarity=0.124 Sum_probs=28.7
Q ss_pred CCCCEEEEEeccccc--hHHHHHHHHHHHHcCCCeEEEEEEec
Q psy15570 24 VGGRVAIMVDDMVDD--VHSFVAAAEVLKDRGAYKIYVLATHG 64 (84)
Q Consensus 24 v~gk~vlivDDii~T--G~Tl~~~~~~L~~~ga~~v~~~~~h~ 64 (84)
+++..++|+|+-.+. -.|-....+.+++....+...+++|-
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 467789999998764 34555566777776555667777774
No 297
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=23.86 E-value=1.7e+02 Score=22.44 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=28.7
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeE
Q psy15570 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKI 57 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v 57 (84)
+++||+|+|+-|--.--.-+...-..++++.+-.+
T Consensus 177 ~~~gR~VlIva~~~~~~~dLk~lk~fi~ey~pvlI 211 (395)
T COG4825 177 DLRGRHVLIVADEPSFEDDLKSLKPFIKEYQPVLI 211 (395)
T ss_pred hhcccEEEEEeCCCChHhHHHHHHHHHHhhCCEEE
Confidence 47899999999988888888888888888876543
No 298
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=23.83 E-value=2.4e+02 Score=19.14 Aligned_cols=48 Identities=15% Similarity=0.183 Sum_probs=33.3
Q ss_pred eeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCC
Q psy15570 20 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLS 67 (84)
Q Consensus 20 i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s 67 (84)
+.|.++|+.|.++---+-.-.+-..+...+.+.+++.+..+-+-+-+.
T Consensus 34 ~~g~~~g~~v~v~~tG~G~~~aa~~~~~li~~~~~~~ii~~G~aG~l~ 81 (230)
T PRK05584 34 YTGTLHGHEVVLVLSGIGKVAAALTATILIEHFKVDAVINTGVAGGLA 81 (230)
T ss_pred EEEEECCEEEEEEECCcCHHHHHHHHHHHHHhcCCCEEEEEEecCCCC
Confidence 457888999999876664444444455677788999877666655443
No 299
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=23.65 E-value=2.6e+02 Score=19.48 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=26.1
Q ss_pred CCCCEEEEEeccc--c---chHHH-HHHHHHHHHcCCCeEEEEEEecc
Q psy15570 24 VGGRVAIMVDDMV--D---DVHSF-VAAAEVLKDRGAYKIYVLATHGL 65 (84)
Q Consensus 24 v~gk~vlivDDii--~---TG~Tl-~~~~~~L~~~ga~~v~~~~~h~~ 65 (84)
..++.++|+|..- + .|.++ ...++.|.+. .....+++||..
T Consensus 108 ~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~ 154 (222)
T cd03287 108 CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYP 154 (222)
T ss_pred CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccH
Confidence 3467899999873 2 25554 4566777776 233466788873
No 300
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=23.64 E-value=1.4e+02 Score=23.17 Aligned_cols=31 Identities=16% Similarity=0.301 Sum_probs=26.6
Q ss_pred CCEEEEEeccccchHHHHHHHHHHHHcCCCeEE
Q psy15570 26 GRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIY 58 (84)
Q Consensus 26 gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~ 58 (84)
|.++++.+|+ .|+|..-+-+.+++.|....+
T Consensus 102 GD~vl~~~~~--YG~t~~~~~~~l~~~gi~~~~ 132 (396)
T COG0626 102 GDHVLLPDDL--YGGTYRLFEKILQKFGVEVTF 132 (396)
T ss_pred CCEEEecCCc--cchHHHHHHHHHHhcCeEEEE
Confidence 8899999994 899999999999998876444
No 301
>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase. In between the trusted and noise cutoffs are: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). In any case, these residues are not conserved. 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilize the MTA/SAH nucleotidase enzyme and a kinase to do this reaction, these have been excluded pending stronger evidence of their function, and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbor-joining trees) and lacks some of the conserved active site residues.
Probab=23.46 E-value=1.7e+02 Score=20.47 Aligned_cols=47 Identities=23% Similarity=0.245 Sum_probs=30.4
Q ss_pred eeeccCCCCEEEEEeccccchH---------HHHHHHHHHHHcCCCeEEEEEEeccCCC
Q psy15570 19 SVVGDVGGRVAIMVDDMVDDVH---------SFVAAAEVLKDRGAYKIYVLATHGLLSS 68 (84)
Q Consensus 19 ~i~g~v~gk~vlivDDii~TG~---------Tl~~~~~~L~~~ga~~v~~~~~h~~~s~ 68 (84)
-+.|.++|++|+++ ..+|. +....++.|.+.|++.+..+.+-+-+.+
T Consensus 35 ~~~G~~~g~~vv~~---~~~G~g~~~~~~~vn~~a~~~~L~~~Gv~~iI~~GsaG~l~~ 90 (241)
T TIGR01694 35 IVVGRVAGVDVAFL---PRHGRGHDIPPHEVNYRANIWALKSLGVKYVISVNAVGSLRE 90 (241)
T ss_pred EEEEEECCEEEEEE---eCCCCCCccChHHCCcHHHHHHHHHcCCCEEEEeccccccCC
Confidence 34667889888876 22222 1223567889999999887766554443
No 302
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=23.45 E-value=2e+02 Score=20.57 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=19.8
Q ss_pred chHHHHH--HHHHHHHcCCCeEEEEE-EeccCCCCHHHHhhcCCCCcCCC
Q psy15570 38 DVHSFVA--AAEVLKDRGAYKIYVLA-THGLLSSDAPLLIEESPIDEVPR 84 (84)
Q Consensus 38 TG~Tl~~--~~~~L~~~ga~~v~~~~-~h~~~s~~a~~~l~~~~i~~i~~ 84 (84)
.|.|... .+..+++.|...|..+. +|+- +...+ .-.|++.||+
T Consensus 16 VGKTy~ML~ea~~l~~~G~DVViG~vethgR--~et~~--l~~gLe~iP~ 61 (211)
T PF02702_consen 16 VGKTYAMLQEAHRLKEQGVDVVIGYVETHGR--PETEA--LLEGLEVIPR 61 (211)
T ss_dssp SSHHHHHHHHHHHHHHTT--EEEEE---TT---HHHHH--HHCTS-B---
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEecCCCc--HHHHH--HHcCCCcCCC
Confidence 5666554 45669999999876655 5652 11111 1256777764
No 303
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=23.30 E-value=1.5e+02 Score=18.30 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 38 DVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 38 TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
.-..+..++..|++.||..+.+.-
T Consensus 72 ~~~~v~~~~~~Lk~~GA~~Ilv~~ 95 (100)
T TIGR03455 72 DEKVVNELIDKLKAAGARDILVLP 95 (100)
T ss_pred cHHHHHHHHHHHHHcCCCeEEEec
Confidence 456778899999999999887654
No 304
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=23.28 E-value=2.7e+02 Score=21.23 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=28.4
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 22 GDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 22 g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
++..|++++++ -+|..=..++..|...|+..+.++.
T Consensus 178 ~~~~~~~vlVi----GaG~iG~~~a~~L~~~G~~~V~v~~ 213 (423)
T PRK00045 178 GDLSGKKVLVI----GAGEMGELVAKHLAEKGVRKITVAN 213 (423)
T ss_pred CCccCCEEEEE----CchHHHHHHHHHHHHCCCCeEEEEe
Confidence 35778888875 6788888888999999988776655
No 305
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=23.26 E-value=1.2e+02 Score=19.86 Aligned_cols=30 Identities=33% Similarity=0.243 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHcCCCeEEEEEEeccCCC
Q psy15570 39 VHSFVAAAEVLKDRGAYKIYVLATHGLLSS 68 (84)
Q Consensus 39 G~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~ 68 (84)
--++..+++.+.+.|++++.++...+.+|.
T Consensus 98 ~P~i~~~l~~l~~~g~~~iivlPl~P~~S~ 127 (159)
T cd03411 98 PPSIEEALEELKADGVDRIVVLPLYPQYSA 127 (159)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEECCccccc
Confidence 345778889999999999888887776655
No 306
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=23.09 E-value=1.9e+02 Score=21.12 Aligned_cols=32 Identities=16% Similarity=0.106 Sum_probs=23.1
Q ss_pred CCCEEEEEeccccch-HHHHHHHHHHHHcCCCeEEE
Q psy15570 25 GGRVAIMVDDMVDDV-HSFVAAAEVLKDRGAYKIYV 59 (84)
Q Consensus 25 ~gk~vlivDDii~TG-~Tl~~~~~~L~~~ga~~v~~ 59 (84)
.++.|++.|+ +| ....++.-.|+..|.+.|++
T Consensus 102 ~~~~VVvY~~---~g~~~a~r~~~~L~~~G~~~V~~ 134 (320)
T PLN02723 102 NKDGVVVYDG---KGIFSAARVWWMFRVFGHEKVWV 134 (320)
T ss_pred CCCEEEEEcC---CCcchHHHHHHHHHHcCCCceEE
Confidence 4678999976 34 33345667899999988774
No 307
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=23.06 E-value=1.4e+02 Score=16.29 Aligned_cols=44 Identities=18% Similarity=0.121 Sum_probs=25.7
Q ss_pred cchHHHHHHHHHHHHcCCCeEEEEEEeccCCC--CHHHHhhcCCCCc
Q psy15570 37 DDVHSFVAAAEVLKDRGAYKIYVLATHGLLSS--DAPLLIEESPIDE 81 (84)
Q Consensus 37 ~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~--~a~~~l~~~~i~~ 81 (84)
++..++...++..++.|.. ..+++=|.-+.+ ...+...+.++.-
T Consensus 12 ~~~~~~~~~~~~a~~~g~~-~v~iTDh~~~~~~~~~~~~~~~~gi~~ 57 (67)
T smart00481 12 DGALSPEELVKRAKELGLK-AIAITDHGNLFGAVEFYKAAKKAGIKP 57 (67)
T ss_pred cccCCHHHHHHHHHHcCCC-EEEEeeCCcccCHHHHHHHHHHcCCeE
Confidence 3445677888888888876 455666764332 2333334445443
No 308
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=23.00 E-value=2.3e+02 Score=18.50 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=27.3
Q ss_pred CCCEEEEEecccc-chHHHHHHHHHHHHcCCCeEEEEEEec
Q psy15570 25 GGRVAIMVDDMVD-DVHSFVAAAEVLKDRGAYKIYVLATHG 64 (84)
Q Consensus 25 ~gk~vlivDDii~-TG~Tl~~~~~~L~~~ga~~v~~~~~h~ 64 (84)
.+.+++|+||.=. |-....++.+.|.+-....++++++.-
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 3689999999876 444555566777777667777777643
No 309
>PTZ00413 lipoate synthase; Provisional
Probab=22.78 E-value=1.3e+02 Score=23.53 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=31.4
Q ss_pred eccccch-HHHHHHHHHHHHcCCCeEEEEEEeccC--CCCHHHHhhcCCCCcC
Q psy15570 33 DDMVDDV-HSFVAAAEVLKDRGAYKIYVLATHGLL--SSDAPLLIEESPIDEV 82 (84)
Q Consensus 33 DDii~TG-~Tl~~~~~~L~~~ga~~v~~~~~h~~~--s~~a~~~l~~~~i~~i 82 (84)
||+-+-| .-+.++++.+++..+. +.+.+..|.| ..+++++|.++|++.+
T Consensus 205 DDL~D~ga~~~a~~I~~Ir~~~p~-~~IevligDf~g~~e~l~~L~eAG~dvy 256 (398)
T PTZ00413 205 DDLPDGGASHVARCVELIKESNPE-LLLEALVGDFHGDLKSVEKLANSPLSVY 256 (398)
T ss_pred CCCChhhHHHHHHHHHHHHccCCC-CeEEEcCCccccCHHHHHHHHhcCCCEE
Confidence 5665543 4456678888876542 4444444666 5578888988887653
No 310
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=22.77 E-value=1.7e+02 Score=19.80 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=22.1
Q ss_pred CCCCEEEEEecccc-chHHHHHHHHHHHHcCCCeEEEE
Q psy15570 24 VGGRVAIMVDDMVD-DVHSFVAAAEVLKDRGAYKIYVL 60 (84)
Q Consensus 24 v~gk~vlivDDii~-TG~Tl~~~~~~L~~~ga~~v~~~ 60 (84)
++||+++|+-|-=- .|-.+. +.++..|+..++..
T Consensus 3 l~gkKviiiGdRDGiPgpAie---~c~~~~gaevvfs~ 37 (150)
T PF04723_consen 3 LEGKKVIIIGDRDGIPGPAIE---ECVKTAGAEVVFSS 37 (150)
T ss_pred cCCcEEEEEecCCCCCcHHHH---HHHHhcCceEEEEe
Confidence 67999999976421 344444 45677788776644
No 311
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=22.59 E-value=96 Score=25.49 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=27.6
Q ss_pred CCCEEEEE-----eccccchHHHHHHHHHHHHcCCCeEEEEEEec
Q psy15570 25 GGRVAIMV-----DDMVDDVHSFVAAAEVLKDRGAYKIYVLATHG 64 (84)
Q Consensus 25 ~gk~vliv-----DDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~ 64 (84)
..+++|++ ||++.-|+|+. .|.+.|.....++.|-|
T Consensus 368 ~~~rvLv~spHPDDevi~~GGTla----rl~~~G~~V~vv~~TsG 408 (652)
T PRK02122 368 YPKRVIIFSPHPDDDVISMGGTFR----RLVEQGHDVHVAYQTSG 408 (652)
T ss_pred CCceEEEEEeCCCchHhhhHHHHH----HHHHCCCcEEEEEecCC
Confidence 45778877 78999999996 56778988666666655
No 312
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=22.49 E-value=1.9e+02 Score=23.16 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=23.9
Q ss_pred CCEEEEEe--ccccchHHHHHHHHHHHHcCCCeEEEEEE
Q psy15570 26 GRVAIMVD--DMVDDVHSFVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 26 gk~vlivD--Dii~TG~Tl~~~~~~L~~~ga~~v~~~~~ 62 (84)
.++|+||| |+++++ ....+.+.|.+-....++++++
T Consensus 119 ~~kViIIDE~~~Lt~~-a~naLLKtLEepp~~~ifIlat 156 (559)
T PRK05563 119 KYKVYIIDEVHMLSTG-AFNALLKTLEEPPAHVIFILAT 156 (559)
T ss_pred CeEEEEEECcccCCHH-HHHHHHHHhcCCCCCeEEEEEe
Confidence 56899999 566554 4667777777655555555554
No 313
>KOG0628|consensus
Probab=22.44 E-value=1.6e+02 Score=23.81 Aligned_cols=50 Identities=30% Similarity=0.152 Sum_probs=40.5
Q ss_pred EEEEEe-ccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcC
Q psy15570 28 VAIMVD-DMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEES 77 (84)
Q Consensus 28 ~vlivD-Dii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~ 77 (84)
+.+.-| +-.=+|.|+..|++.=.++|-...+++++.|..+.=+.+.|.+-
T Consensus 207 R~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~el 257 (511)
T KOG0628|consen 207 RALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEEL 257 (511)
T ss_pred EEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHHHh
Confidence 444545 77779999999999999999999999999997776666666554
No 314
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=22.44 E-value=3e+02 Score=21.11 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=34.5
Q ss_pred CEEEEEeccccc-hHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCc
Q psy15570 27 RVAIMVDDMVDD-VHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDE 81 (84)
Q Consensus 27 k~vlivDDii~T-G~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~ 81 (84)
+.+.+.||.... ...+.+.++.+++.|.. +.+.+..-++.+.++.+.++|+..
T Consensus 247 ~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~--~~~~~~~~~~~e~l~~l~~aG~~~ 300 (472)
T TIGR03471 247 REFFFDDDTFTDDKPRAEEIARKLGPLGVT--WSCNARANVDYETLKVMKENGLRL 300 (472)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHhhcCce--EEEEecCCCCHHHHHHHHHcCCCE
Confidence 678888887653 34566777888877642 222223335667788888888764
No 315
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=22.39 E-value=2.1e+02 Score=22.34 Aligned_cols=51 Identities=16% Similarity=-0.055 Sum_probs=36.4
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHh
Q psy15570 24 VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLI 74 (84)
Q Consensus 24 v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l 74 (84)
++||.+.++---=-+|+.+....+.|++.|++.+..+.+....+.+..+++
T Consensus 335 l~gK~~~vFGSygw~g~a~~~~~~~l~~~g~~~~~~l~~~~~P~ee~~~~~ 385 (479)
T PRK05452 335 FRNKRASAFGSHGWSGGAVDRLSTRLQDAGFEMSLSLKAKWRPDQDALELC 385 (479)
T ss_pred cCCCEEEEEECCCcCcHHHHHHHHHHHHCCCEEeccEEEEecCCHHHHHHH
Confidence 678888888866666778888888899999988766665554333444444
No 316
>COG0040 HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=22.30 E-value=51 Score=24.60 Aligned_cols=13 Identities=23% Similarity=0.307 Sum_probs=10.4
Q ss_pred EeccccchHHHHH
Q psy15570 32 VDDMVDDVHSFVA 44 (84)
Q Consensus 32 vDDii~TG~Tl~~ 44 (84)
|=|+++||+|+.+
T Consensus 159 IvDivsTG~TLka 171 (290)
T COG0040 159 IVDIVSTGTTLKA 171 (290)
T ss_pred EEEeecCCHhHHH
Confidence 4489999999763
No 317
>cd01644 RT_pepA17 RT_pepA17: Reverse transcriptase (RTs) in retrotransposons. This subfamily represents the RT domain of a multifunctional enzyme. C-terminal to the RT domain is a domain homologous to aspartic proteinases (corresponding to Merops family A17) encoded by retrotransposons and retroviruses. RT catalyzes DNA replication from an RNA template and is responsible for the replication of retroelements.
Probab=22.22 E-value=48 Score=23.03 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=20.9
Q ss_pred EEEEEeccccchHHHHH-------HHHHHHHcCCCeE
Q psy15570 28 VAIMVDDMVDDVHSFVA-------AAEVLKDRGAYKI 57 (84)
Q Consensus 28 ~vlivDDii~TG~Tl~~-------~~~~L~~~ga~~v 57 (84)
..+=+||++..+.|..+ +.+.|++.|-..-
T Consensus 137 ~~~YvDDili~~~s~~e~~~~~~~v~~~L~~~Gf~l~ 173 (213)
T cd01644 137 RNFYVDDILVSTDTLNEAVNVAKRLIALLKKGGFNLR 173 (213)
T ss_pred HeeecccceecCCCHHHHHHHHHHHHHHHHhCCccch
Confidence 45779999999988654 4455666676543
No 318
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=22.19 E-value=71 Score=26.68 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=25.6
Q ss_pred CCCCCcccCCCCCCeeeeccC-----CCCEEEEEecccc
Q psy15570 4 DVGVPQHPAKEKPPISVVGDV-----GGRVAIMVDDMVD 37 (84)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~g~v-----~gk~vlivDDii~ 37 (84)
+.+++|+..++...+++..-. .+-.|+.+||+-+
T Consensus 438 ~~ev~~~r~g~~rtl~Vq~t~~~~d~~~gyVvt~DDITd 476 (712)
T COG5000 438 RVEVKLAREGEERTLNVQATREPEDNGNGYVVTFDDITD 476 (712)
T ss_pred cceeecccCCCceeeeeeeeecccccCCceEEEecchHH
Confidence 357889999999988886532 2347999999864
No 319
>PF13166 AAA_13: AAA domain
Probab=22.10 E-value=2.3e+02 Score=22.71 Aligned_cols=41 Identities=22% Similarity=0.369 Sum_probs=25.6
Q ss_pred CCCEEEEEeccccch--HHHHHHHHHHHHc---C-CCeEEEEEEeccC
Q psy15570 25 GGRVAIMVDDMVDDV--HSFVAAAEVLKDR---G-AYKIYVLATHGLL 66 (84)
Q Consensus 25 ~gk~vlivDDii~TG--~Tl~~~~~~L~~~---g-a~~v~~~~~h~~~ 66 (84)
..+.+|++||=|+|= .-...+++.|++. . .+.|+ +.||-+.
T Consensus 526 ~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~Qvi-IlTHn~~ 572 (712)
T PF13166_consen 526 NKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVI-ILTHNLY 572 (712)
T ss_pred CcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEE-EEeCcHH
Confidence 367899999998873 3344455666665 3 34444 5578753
No 320
>PRK07823 5'-methylthioadenosine phosphorylase; Validated
Probab=22.09 E-value=2.6e+02 Score=20.39 Aligned_cols=57 Identities=25% Similarity=0.405 Sum_probs=36.1
Q ss_pred CCCCcccCCCCCCeeeeccCCCCEEEEE--e--ccccchHHH--HHHHHHHHHcCCCeEEEEEEec
Q psy15570 5 VGVPQHPAKEKPPISVVGDVGGRVAIMV--D--DMVDDVHSF--VAAAEVLKDRGAYKIYVLATHG 64 (84)
Q Consensus 5 ~~~~~~~~~~~~~~~i~g~v~gk~vliv--D--Dii~TG~Tl--~~~~~~L~~~ga~~v~~~~~h~ 64 (84)
..+||... ..-.+.|.+.|+.|+.+ . .=.-.|.++ ..-+..|++.|++.+.+....+
T Consensus 29 ~~tpyg~~---sg~l~~G~l~g~~v~~l~RhGr~H~ye~~~i~~rani~alk~lGv~~ii~tnA~G 91 (264)
T PRK07823 29 VDTPYGPP---SAPITIGEVGGRRVAFLPRHGRDHEFSPHTVPYRANMWALRALGVRRVFAPCAVG 91 (264)
T ss_pred EeccCCCC---CCCEEEEEECCEEEEEEeCCCCCCCcCCCCccchHHHHHHHHcCCCEEEEecccc
Confidence 46677641 12244678899999888 2 112245554 4445689999999887766544
No 321
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=21.88 E-value=2.2e+02 Score=17.91 Aligned_cols=33 Identities=6% Similarity=0.086 Sum_probs=18.5
Q ss_pred HHHHHHHHcCCCeEEEEEEeccC--CCCHHHHhhc
Q psy15570 44 AAAEVLKDRGAYKIYVLATHGLL--SSDAPLLIEE 76 (84)
Q Consensus 44 ~~~~~L~~~ga~~v~~~~~h~~~--s~~a~~~l~~ 76 (84)
.++.++.+.|.++|+..+.++-. .+++.+.|++
T Consensus 79 mC~~ai~~~gi~~Vv~g~~~~~~~~~~~g~~~l~~ 113 (115)
T cd01284 79 PCVDAIIEAGIKRVVVGVRDPNPLVAGKGAERLRA 113 (115)
T ss_pred HHHHHHHHHCcCEEEEEecCCCcccccHHHHHHHH
Confidence 56667777777776666655532 1234444444
No 322
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=21.68 E-value=1.9e+02 Score=17.20 Aligned_cols=44 Identities=11% Similarity=-0.020 Sum_probs=27.7
Q ss_pred CCCEEEEEeccccchH--HHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCC
Q psy15570 25 GGRVAIMVDDMVDDVH--SFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPI 79 (84)
Q Consensus 25 ~gk~vlivDDii~TG~--Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i 79 (84)
+++.++++++ +|. ....++..|++.|.. ++. + ..+.....+.|.
T Consensus 63 ~~~~vvvyc~---~g~~~~s~~~a~~l~~~G~~-v~~------l-~GG~~~W~~~g~ 108 (110)
T cd01521 63 KEKLFVVYCD---GPGCNGATKAALKLAELGFP-VKE------M-IGGLDWWKREGY 108 (110)
T ss_pred CCCeEEEEEC---CCCCchHHHHHHHHHHcCCe-EEE------e-cCCHHHHHHCCC
Confidence 5788888875 442 556677899999985 432 2 234555555543
No 323
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional
Probab=21.68 E-value=2.5e+02 Score=20.78 Aligned_cols=56 Identities=21% Similarity=0.319 Sum_probs=36.5
Q ss_pred CCCCcccCCCCCCeeeeccCCCCEEEEEe-----ccccchHHH--HHHHHHHHHcCCCeEEEEEEec
Q psy15570 5 VGVPQHPAKEKPPISVVGDVGGRVAIMVD-----DMVDDVHSF--VAAAEVLKDRGAYKIYVLATHG 64 (84)
Q Consensus 5 ~~~~~~~~~~~~~~~i~g~v~gk~vlivD-----Dii~TG~Tl--~~~~~~L~~~ga~~v~~~~~h~ 64 (84)
..+||... ..--+.|.+.|+.|+.+- -.+ +-..+ .+-+..|+..|++.+.+....|
T Consensus 28 ~~tpyg~p---sg~l~~G~l~G~~V~~l~RhGr~H~y-~p~~i~~rAni~alk~lGv~~ii~tnA~G 90 (289)
T PRK08931 28 VESPWGEP---SDALLFGRLGGVPMVFLPRHGRGHRL-SPSDINYRANIDALKRAGVTDIVSLSACG 90 (289)
T ss_pred eEcCCCCC---cCcEEEEEECCEEEEEEeCCCCCCcc-ChHHcccHHHHHHHHHcCCCEEEEecccc
Confidence 35666642 233456788899998884 222 33443 3377899999999887766544
No 324
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=21.60 E-value=1.4e+02 Score=21.90 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=28.1
Q ss_pred EEEEEeccccchHHH--HHHHHHHHHc-CCCeEEEEEEec
Q psy15570 28 VAIMVDDMVDDVHSF--VAAAEVLKDR-GAYKIYVLATHG 64 (84)
Q Consensus 28 ~vlivDDii~TG~Tl--~~~~~~L~~~-ga~~v~~~~~h~ 64 (84)
.++|+|-+++-|-.- ..|.+.+.+. .-....++++|.
T Consensus 167 dILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd 206 (249)
T COG1134 167 DILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHD 206 (249)
T ss_pred CEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 699999999999653 4477777766 444677888887
No 325
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.47 E-value=1.3e+02 Score=23.07 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=33.0
Q ss_pred CCCCCCC-cccCCCCCCeeeeccCCCCEEEEEe--cc----ccchHHHHHHHHHHHHcCCC
Q psy15570 2 EMDVGVP-QHPAKEKPPISVVGDVGGRVAIMVD--DM----VDDVHSFVAAAEVLKDRGAY 55 (84)
Q Consensus 2 ~~~~~~~-~~~~~~~~~~~i~g~v~gk~vlivD--Di----i~TG~Tl~~~~~~L~~~ga~ 55 (84)
++..|+| |++=.+.+. --...++|=+++++| |+ .|.=+||..++++..++|..
T Consensus 54 D~~tglpVySLYG~~~~-Pt~~mL~~vDvlvfDiQDvG~R~YTYi~Tl~~~MeAaa~~g~~ 113 (365)
T PF07075_consen 54 DPRTGLPVYSLYGKTRK-PTPEMLKGVDVLVFDIQDVGVRFYTYISTLYYVMEAAAENGKP 113 (365)
T ss_pred CCCCCCeEEECCCCCCC-CCHHHHhCCCEEEEeCccCCchHHHHHHHHHHHHHHHHHhCCe
Confidence 4567888 443333211 011235567888887 33 56668889999999988865
No 326
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=21.44 E-value=2.6e+02 Score=19.53 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=27.4
Q ss_pred eccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEE
Q psy15570 21 VGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 21 ~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~ 62 (84)
--+++||+|+++ -.|..-..=++.|.+.|+. +.+++.
T Consensus 7 ~~~l~~k~Vlvv----GgG~va~rKa~~ll~~ga~-v~Vvs~ 43 (210)
T COG1648 7 FLDLEGKKVLVV----GGGSVALRKARLLLKAGAD-VTVVSP 43 (210)
T ss_pred EEEcCCCEEEEE----CCCHHHHHHHHHHHhcCCE-EEEEcC
Confidence 336789999874 5777777778999999877 555553
No 327
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=21.27 E-value=1.7e+02 Score=20.63 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=25.7
Q ss_pred EEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEecc
Q psy15570 29 AIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGL 65 (84)
Q Consensus 29 vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~ 65 (84)
=+|.||++-+-+.+..|++.|... .+..+-+|..
T Consensus 116 ~~i~Ddv~~~r~~L~Dc~r~l~g~---~v~~VGV~~p 149 (205)
T COG3896 116 NVIADDVIWTREWLVDCLRVLEGC---RVWMVGVHVP 149 (205)
T ss_pred ceeehhcccchhhHHHHHHHHhCC---ceEEEEeecc
Confidence 358899999999999999888744 3555566553
No 328
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=21.27 E-value=1.6e+02 Score=21.32 Aligned_cols=32 Identities=22% Similarity=0.122 Sum_probs=26.6
Q ss_pred CCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 26 GRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 26 gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
+++++| +-+|++-.+++-.|.+.|++++.++.
T Consensus 122 ~~~vli----lGaGGaarAi~~aL~~~g~~~i~i~n 153 (272)
T PRK12550 122 DLVVAL----RGSGGMAKAVAAALRDAGFTDGTIVA 153 (272)
T ss_pred CCeEEE----ECCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 456664 57999999999999999999888765
No 329
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=21.24 E-value=2.6e+02 Score=18.65 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=26.2
Q ss_pred cCCCCEEEEEeccc-------cch-------HHHHHHHHHHHHcCCCeEEEEE
Q psy15570 23 DVGGRVAIMVDDMV-------DDV-------HSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 23 ~v~gk~vlivDDii-------~TG-------~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
+++||-||+....- .++ .++..-++..+++|+.-+.++.
T Consensus 45 DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~ 97 (151)
T cd04822 45 DVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVN 97 (151)
T ss_pred CCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEe
Confidence 68999887766531 111 3455667888999998776654
No 330
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional
Probab=21.23 E-value=3.1e+02 Score=21.11 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=26.1
Q ss_pred CCeeeeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCCe
Q psy15570 16 PPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYK 56 (84)
Q Consensus 16 ~~~~i~g~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~ 56 (84)
..++++... ..+.++||-..+-.++.++++.+++....+
T Consensus 329 gR~e~i~~~--~g~~vi~DyahNP~s~~aal~~l~~~~~~r 367 (481)
T PRK14022 329 GRMEVLTQS--NGAKVFIDYAHNGDSLNKLIDVVEEHQKGK 367 (481)
T ss_pred CCeEEEECC--CCCEEEEECCCCHHHHHHHHHHHhhhCCCC
Confidence 345555432 234456778899999999999998764333
No 331
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=21.16 E-value=86 Score=16.06 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=18.4
Q ss_pred cchHHHHHHHHHHHHcCCCeEEEE
Q psy15570 37 DDVHSFVAAAEVLKDRGAYKIYVL 60 (84)
Q Consensus 37 ~TG~Tl~~~~~~L~~~ga~~v~~~ 60 (84)
....|+..+.+.+++.+...+.++
T Consensus 13 ~~~~~l~~~~~~~~~~~~~~~~V~ 36 (57)
T PF00571_consen 13 SPDDSLEEALEIMRKNGISRLPVV 36 (57)
T ss_dssp ETTSBHHHHHHHHHHHTSSEEEEE
T ss_pred cCcCcHHHHHHHHHHcCCcEEEEE
Confidence 455788999999999997765543
No 332
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=21.09 E-value=2.2e+02 Score=17.65 Aligned_cols=23 Identities=9% Similarity=0.006 Sum_probs=10.7
Q ss_pred eccccchHHHHHHHHHHHHcCCC
Q psy15570 33 DDMVDDVHSFVAAAEVLKDRGAY 55 (84)
Q Consensus 33 DDii~TG~Tl~~~~~~L~~~ga~ 55 (84)
|+---+-..+....+.+.+..+.
T Consensus 63 ~~~~v~~~~L~~~l~~~~~~~~~ 85 (122)
T TIGR02803 63 GNDPVARETLGTALDALTEGDKD 85 (122)
T ss_pred CCccCCHHHHHHHHHHHHhcCCC
Confidence 44333445555555554444433
No 333
>PF11181 YflT: Heat induced stress protein YflT
Probab=20.86 E-value=2.1e+02 Score=17.33 Aligned_cols=27 Identities=37% Similarity=0.513 Sum_probs=21.5
Q ss_pred cccchHHHHHHHHHHHHcCCCe--EEEEE
Q psy15570 35 MVDDVHSFVAAAEVLKDRGAYK--IYVLA 61 (84)
Q Consensus 35 ii~TG~Tl~~~~~~L~~~ga~~--v~~~~ 61 (84)
++.|...+..+++.|+..|... +++++
T Consensus 5 v~~~~~E~~~~I~~L~~~Gy~~ddI~Vva 33 (103)
T PF11181_consen 5 VYDNEEEALSAIEELKAQGYSEDDIYVVA 33 (103)
T ss_pred EECCHHHHHHHHHHHHHcCCCcccEEEEE
Confidence 4578888999999999999664 66555
No 334
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=20.84 E-value=3.9e+02 Score=20.45 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=26.0
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEE
Q psy15570 24 VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVL 60 (84)
Q Consensus 24 v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~ 60 (84)
..||+++|| -.|.+-..++..+...|+++|...
T Consensus 279 ~~gk~VvVI----GgG~~g~e~A~~~~~~ga~~Vt~~ 311 (471)
T PRK12810 279 AKGKHVVVI----GGGDTGMDCVGTAIRQGAKSVTQR 311 (471)
T ss_pred CCCCEEEEE----CCcHHHHHHHHHHHHcCCCeEEEc
Confidence 358899886 577888888888889999877744
No 335
>PF13730 HTH_36: Helix-turn-helix domain
Probab=20.79 E-value=1.1e+02 Score=15.99 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=15.6
Q ss_pred ccccchHHHHHHHHHHHHcCC
Q psy15570 34 DMVDDVHSFVAAAEVLKDRGA 54 (84)
Q Consensus 34 Dii~TG~Tl~~~~~~L~~~ga 54 (84)
++=-+=.|+.++++.|++.|-
T Consensus 34 ~~g~s~~Tv~~~i~~L~~~G~ 54 (55)
T PF13730_consen 34 DLGVSRRTVQRAIKELEEKGL 54 (55)
T ss_pred HHCcCHHHHHHHHHHHHHCcC
Confidence 334456788999999998873
No 336
>PRK05642 DNA replication initiation factor; Validated
Probab=20.75 E-value=1.2e+02 Score=21.16 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=20.6
Q ss_pred CCCCEEEEEeccc------cchHHHHHHHHHHHHcCCC
Q psy15570 24 VGGRVAIMVDDMV------DDVHSFVAAAEVLKDRGAY 55 (84)
Q Consensus 24 v~gk~vlivDDii------~TG~Tl~~~~~~L~~~ga~ 55 (84)
+..-.++++||+= .+-..+..+.+.+.+.|-.
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ 132 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRR 132 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCE
Confidence 3444789999993 1123466777777777744
No 337
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=20.74 E-value=97 Score=19.29 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=27.2
Q ss_pred cccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCcC
Q psy15570 35 MVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 82 (84)
Q Consensus 35 ii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i 82 (84)
++..-.....+++.+.+.|++.+.+.. +..+..+.+..++.+++-+
T Consensus 61 v~~~~~~~~~~v~~~~~~g~~~v~~~~--g~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 61 VCVPPDKVPEIVDEAAALGVKAVWLQP--GAESEELIEAAREAGIRVI 106 (116)
T ss_dssp E-S-HHHHHHHHHHHHHHT-SEEEE-T--TS--HHHHHHHHHTT-EEE
T ss_pred EEcCHHHHHHHHHHHHHcCCCEEEEEc--chHHHHHHHHHHHcCCEEE
Confidence 456667777788888888988666544 3445567777777777544
No 338
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=20.56 E-value=95 Score=20.92 Aligned_cols=44 Identities=14% Similarity=0.021 Sum_probs=35.5
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccC
Q psy15570 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLL 66 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~ 66 (84)
.+++-.+|+..+=.-+|+|=..|+..|+.+|.+-|.+-+.-.+|
T Consensus 44 ~~~~g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFarIf 87 (156)
T TIGR02084 44 KVKEGDIIVAGENFGCGSSREHAPIAIKASGISCVIAKSFARIF 87 (156)
T ss_pred hcCCCCEEEccCcccCCCcHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 45666899999999999999999999999999977654433333
No 339
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=20.49 E-value=1.9e+02 Score=16.70 Aligned_cols=27 Identities=11% Similarity=0.119 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHcCCCeEEEEEEecc
Q psy15570 39 VHSFVAAAEVLKDRGAYKIYVLATHGL 65 (84)
Q Consensus 39 G~Tl~~~~~~L~~~ga~~v~~~~~h~~ 65 (84)
.-++..+++.|++.|.+.+.++-.+..
T Consensus 44 ~P~i~~~l~~l~~~g~~~vvvvPl~~~ 70 (101)
T cd03409 44 GPDTEEAIRELAEEGYQRVVIVPLAPV 70 (101)
T ss_pred CCCHHHHHHHHHHcCCCeEEEEeCccc
Confidence 456677777787778777776665443
No 340
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=20.48 E-value=2.6e+02 Score=18.17 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=34.3
Q ss_pred CEEEEEeccccchH-HHHHHHHHHHHcCCCeEEEEEEeccC-CCC----HHHHhhcCCCCcC
Q psy15570 27 RVAIMVDDMVDDVH-SFVAAAEVLKDRGAYKIYVLATHGLL-SSD----APLLIEESPIDEV 82 (84)
Q Consensus 27 k~vlivDDii~TG~-Tl~~~~~~L~~~ga~~v~~~~~h~~~-s~~----a~~~l~~~~i~~i 82 (84)
-.++-+--+.+|.- .+..+.+.|+++|...+.+++==++. .++ -.++|.+.|++++
T Consensus 51 adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~v 112 (128)
T cd02072 51 ADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRV 112 (128)
T ss_pred CCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEE
Confidence 35666666665554 45778899999998666555421121 111 2356888888753
No 341
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=20.47 E-value=1.9e+02 Score=16.63 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=23.1
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
+++||-||+-..-. ++..-++..+++||.-+.++.
T Consensus 31 ~~~gkIvlv~rg~~----~~~~k~~~a~~~GA~gvIi~~ 65 (101)
T PF02225_consen 31 DVKGKIVLVERGSC----SFDDKVRNAQKAGAKGVIIYN 65 (101)
T ss_dssp TCTTSEEEEESTSS----CHHHHHHHHHHTTESEEEEE-
T ss_pred cccceEEEEecCCC----CHHHHHHHHHHcCCEEEEEEe
Confidence 46788766622222 567777899999999766655
No 342
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=20.38 E-value=2.4e+02 Score=23.14 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=24.6
Q ss_pred CEEEEEeccccch-HHHHHHHHHHHHcCCCeEEEEE
Q psy15570 27 RVAIMVDDMVDDV-HSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 27 k~vlivDDii~TG-~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
+.+||+-|..++. .....+++.|++.|.. ++++.
T Consensus 151 KVVILLTDG~sns~~dvleaAq~LR~~GVe-I~vIG 185 (576)
T PTZ00441 151 QLVILMTDGIPNSKYRALEESRKLKDRNVK-LAVIG 185 (576)
T ss_pred eEEEEEecCCCCCcccHHHHHHHHHHCCCE-EEEEE
Confidence 6799999999864 3444567889988875 55555
No 343
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=20.36 E-value=2.9e+02 Score=20.84 Aligned_cols=40 Identities=25% Similarity=0.417 Sum_probs=26.5
Q ss_pred CCCEEEEEeccccc-hHHHHHHHHHHHHcCCCeEEEEEEec
Q psy15570 25 GGRVAIMVDDMVDD-VHSFVAAAEVLKDRGAYKIYVLATHG 64 (84)
Q Consensus 25 ~gk~vlivDDii~T-G~Tl~~~~~~L~~~ga~~v~~~~~h~ 64 (84)
.+.+|+||||.=.- -.+...+.+.|++--...++++++|.
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECC
Confidence 46789999985332 24445666777766556677777765
No 344
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=20.30 E-value=1.1e+02 Score=20.02 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=19.2
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHcC
Q psy15570 24 VGGRVAIMVDDMVDDVHSFVAAAEVLKDRG 53 (84)
Q Consensus 24 v~gk~vlivDDii~TG~Tl~~~~~~L~~~g 53 (84)
+++..++.+ ++|+|...+++.|.+..
T Consensus 17 I~~~~~Ifl----d~GtT~~~la~~L~~~~ 42 (161)
T PF00455_consen 17 IEDGDTIFL----DSGTTTLELAKYLPDKK 42 (161)
T ss_pred CCCCCEEEE----ECchHHHHHHHHhhcCC
Confidence 344445554 58999999999999885
No 345
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=20.29 E-value=2.6e+02 Score=18.22 Aligned_cols=35 Identities=20% Similarity=0.133 Sum_probs=23.7
Q ss_pred CEEEEEeccccc---hHHHHHHHHHHHHcCCCeEEEEEE
Q psy15570 27 RVAIMVDDMVDD---VHSFVAAAEVLKDRGAYKIYVLAT 62 (84)
Q Consensus 27 k~vlivDDii~T---G~Tl~~~~~~L~~~ga~~v~~~~~ 62 (84)
+.++++=|--++ +.....+++.+++.|. .++++.+
T Consensus 105 ~~villTDG~~~~~~~~~~~~~a~~l~~~gv-~i~~vgv 142 (185)
T cd01474 105 SVIIALTDGQLLLNGHKYPEHEAKLSRKLGA-IVYCVGV 142 (185)
T ss_pred eEEEEEcCCCcCCCCCcchHHHHHHHHHcCC-EEEEEee
Confidence 567888777763 2344556788998887 4666664
No 346
>PRK05481 lipoyl synthase; Provisional
Probab=20.25 E-value=3.5e+02 Score=19.61 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=34.2
Q ss_pred CEEEEE----eccccch-HHHHHHHHHHHHc-CCCeEEEEEEeccCCCCHHHHhhcCCCCcC
Q psy15570 27 RVAIMV----DDMVDDV-HSFVAAAEVLKDR-GAYKIYVLATHGLLSSDAPLLIEESPIDEV 82 (84)
Q Consensus 27 k~vliv----DDii~TG-~Tl~~~~~~L~~~-ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i 82 (84)
+.++|+ ||.-+.| ..+..+++.+++. ....+.++..|+....+.+..+.++|.+-+
T Consensus 98 kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~ag~~i~ 159 (289)
T PRK05481 98 KYVVITSVDRDDLPDGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPDVF 159 (289)
T ss_pred CEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHhcCccee
Confidence 566666 5443323 4788888888874 223577777666544456666767765543
No 347
>PRK05319 rplD 50S ribosomal protein L4; Provisional
Probab=20.21 E-value=1.7e+02 Score=20.45 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=22.4
Q ss_pred EEEEEeccccchHHHHHHHHHHHHcCCCeEEE
Q psy15570 28 VAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYV 59 (84)
Q Consensus 28 ~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~ 59 (84)
.++||||..-+-..-..+.+.|++.|..++.+
T Consensus 121 ~l~Vvd~~~~~~~KTk~~~~~l~~lg~~~~Li 152 (205)
T PRK05319 121 RLVVVDDLSLEAPKTKELAAKLKNLGLKKVLI 152 (205)
T ss_pred CeEEEeccccCCCCHHHHHHHHHHcCCCceEE
Confidence 57888998534444577889999998754433
No 348
>PRK00035 hemH ferrochelatase; Reviewed
Probab=20.20 E-value=1.3e+02 Score=21.97 Aligned_cols=29 Identities=34% Similarity=0.260 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEEeccCCC
Q psy15570 40 HSFVAAAEVLKDRGAYKIYVLATHGLLSS 68 (84)
Q Consensus 40 ~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~ 68 (84)
-++..+++.|.+.|++.+.++-.|+.++.
T Consensus 105 P~i~eal~~l~~~G~~~IivlPL~p~~s~ 133 (333)
T PRK00035 105 PSIEEALEALKADGVDRIVVLPLYPQYSY 133 (333)
T ss_pred CCHHHHHHHHHhcCCCEEEEEECCCcccc
Confidence 56788899999999999999988876653
No 349
>KOG2836|consensus
Probab=20.13 E-value=3e+02 Score=18.81 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=28.6
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 24 VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 24 v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
.++.+.+|-|. .|-.|+..-++.|+++|+..+--+|
T Consensus 14 y~~MrFLIThn--PtnaTln~fieELkKygvttvVRVC 49 (173)
T KOG2836|consen 14 YKNMRFLITHN--PTNATLNKFIEELKKYGVTTVVRVC 49 (173)
T ss_pred ccceEEEEecC--CCchhHHHHHHHHHhcCCeEEEEec
Confidence 56778877765 5788999999999999998755444
No 350
>KOG2977|consensus
Probab=20.11 E-value=2.4e+02 Score=21.47 Aligned_cols=33 Identities=24% Similarity=0.220 Sum_probs=27.5
Q ss_pred EEEEEeccccchHHHHHHHHHHHHcCCCeEEEEE
Q psy15570 28 VAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61 (84)
Q Consensus 28 ~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~ 61 (84)
-++++||-- +-+|...|.+..++.|...++++.
T Consensus 106 eiiVvddgs-~d~T~~~a~k~s~K~~~d~irV~~ 138 (323)
T KOG2977|consen 106 EIIVVDDGS-TDSTVEVALKFSRKLGDDNIRVIK 138 (323)
T ss_pred eEEEeCCCC-chhHHHHHHHHHHHcCcceEEEee
Confidence 478888875 667889999999999999998876
No 351
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.02 E-value=3.2e+02 Score=20.13 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=24.2
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHcCCC
Q psy15570 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAY 55 (84)
Q Consensus 23 ~v~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~ 55 (84)
+++|++|++++--..-|..+.. .|.+.|+.
T Consensus 149 ~l~Gk~V~ViGrs~~vGrpla~---lL~~~~at 178 (279)
T PRK14178 149 SIAGKRAVVVGRSIDVGRPMAA---LLLNADAT 178 (279)
T ss_pred CCCCCEEEEECCCccccHHHHH---HHHhCCCe
Confidence 5789999999999999998875 45567754
No 352
>KOG1198|consensus
Probab=20.01 E-value=3.9e+02 Score=20.05 Aligned_cols=50 Identities=24% Similarity=0.279 Sum_probs=34.9
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCCeEEEEEEeccCCCCHHHHhhcCCCCcC
Q psy15570 25 GGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 82 (84)
Q Consensus 25 ~gk~vlivDDii~TG~Tl~~~~~~L~~~ga~~v~~~~~h~~~s~~a~~~l~~~~i~~i 82 (84)
+|+.+|++. .+|+=-..+++..+.+|+..+.+++ +.+..+.+.+-|.+++
T Consensus 157 ~g~~vLv~g---gsggVG~~aiQlAk~~~~~~v~t~~-----s~e~~~l~k~lGAd~v 206 (347)
T KOG1198|consen 157 KGKSVLVLG---GSGGVGTAAIQLAKHAGAIKVVTAC-----SKEKLELVKKLGADEV 206 (347)
T ss_pred CCCeEEEEe---CCcHHHHHHHHHHHhcCCcEEEEEc-----ccchHHHHHHcCCcEe
Confidence 477787753 5677777888999999954444333 5777888887776654
Done!